Skip to content

Instantly share code, notes, and snippets.

@arq5x

arq5x/workflow.sh

Last active August 29, 2015 14:12
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save arq5x/78d7de65d3b464268844 to your computer and use it in GitHub Desktop.
Save arq5x/78d7de65d3b464268844 to your computer and use it in GitHub Desktop.
Download ZIP
big multi-file intersect examples
Raw
workflow.sh
# 1. Download BED files of 349 DHS experiments from Science, 337, no. 6099, pp. 1190-1195, 7 Sep. 2012
# http://www.uwencode.org/proj/Science_Maurano_Humbert_et_al/
wget http://www.uwencode.org/proj/Science_Maurano_Humbert_et_al/data/all_fdr0.05_hot.tgz
# 2. Unpack.
tar -zxvf all_fdr0.05_hot.tgz
# 3. Make sure all of the files are sorted lexicographically by chrom, then numerically by start.
# This is required for the sweep allgorithm.
# Hint: they are sorted correctly, this is just a sanity check.
for file in `ls *.bed`; do; sort -c -k1,1 -k2,2n $file; done
# 4. How many total intervals are there? (61,200,087)
wc -l *.bed
117992 A549-DS14289.hotspot.twopass.fdr0.05.merge.bed
174802 AG04449-DS12319.hotspot.twopass.fdr0.05.merge.bed
150114 AG04450-DS12270.hotspot.twopass.fdr0.05.merge.bed
197301 AG09309-DS12352.hotspot.twopass.fdr0.05.merge.bed
137192 AG09319-DS12291.hotspot.twopass.fdr0.05.merge.bed
171903 AG10803-DS12384.hotspot.twopass.fdr0.05.merge.bed
169477 AoAF-DS13523.hotspot.twopass.fdr0.05.merge.bed
168003 BE2_C-DS14625.hotspot.twopass.fdr0.05.merge.bed
162671 BJ-DS10081.hotspot.twopass.fdr0.05.merge.bed
117293 CACO2-DS8235.hotspot.twopass.fdr0.05.merge.bed
117181 CD14-DS18065.hg19.hotspot.twopass.fdr0.05.merge.bed
75086 CD19-DS17281.hg19.hotspot.twopass.fdr0.05.merge.bed
170412 CD20-DS17371.hg19.hotspot.twopass.fdr0.05.merge.bed
86908 CD20-DS17541.hg19.hotspot.twopass.fdr0.05.merge.bed
77933 CD3-DS17198.hotspot.twopass.fdr0.05.merge.bed
134718 CD34-DS12274.hotspot.twopass.fdr0.05.merge.bed
74992 CD3_CordBlood-DS17706.hg19.hotspot.twopass.fdr0.05.merge.bed
94881 CD4-DS15947.hotspot.twopass.fdr0.05.merge.bed
105724 CD56-DS16376.hotspot.twopass.fdr0.05.merge.bed
75382 CD8-DS17203.hotspot.twopass.fdr0.05.merge.bed
123561 CMK-DS12393.hotspot.twopass.fdr0.05.merge.bed
86958 GM06990-DS7748.hotspot.twopass.fdr0.05.merge.bed
132370 GM12864-DS12431.hotspot.twopass.fdr0.05.merge.bed
133962 GM12865-DS12436.hotspot.twopass.fdr0.05.merge.bed
109419 GM12878-DS10671.hotspot.twopass.fdr0.05.merge.bed
178572 H1_P18-DS18873.hg19.hotspot.twopass.fdr0.05.merge.bed
140166 H9_P42-DS18522.hg19.hotspot.twopass.fdr0.05.merge.bed
200771 HAEpiC-DS12663.hotspot.twopass.fdr0.05.merge.bed
183752 HAc-DS14765.hotspot.twopass.fdr0.05.merge.bed
215151 HAh-DS15192.hotspot.twopass.fdr0.05.merge.bed
215720 HAsp-DS14790.hotspot.twopass.fdr0.05.merge.bed
196870 HBMEC-DS13817.hotspot.twopass.fdr0.05.merge.bed
171858 HCF-DS12501.hotspot.twopass.fdr0.05.merge.bed
184810 HCFaa-DS13480.hotspot.twopass.fdr0.05.merge.bed
191262 HCM-DS12599.hotspot.twopass.fdr0.05.merge.bed
209492 HCPEpiC-DS12447.hotspot.twopass.fdr0.05.merge.bed
104196 HCT116-DS13551.hotspot.twopass.fdr0.05.merge.bed
150877 HConF-DS11642.hotspot.twopass.fdr0.05.merge.bed
213954 HEEpiC-DS12763.hotspot.twopass.fdr0.05.merge.bed
81159 HEPG2-DS7764.hotspot.twopass.fdr0.05.merge.bed
163880 HESC-DS10167.hotspot.twopass.fdr0.05.merge.bed
189148 HFF-DS15115.hotspot.twopass.fdr0.05.merge.bed
215171 HFF_MyC-DS15079.hotspot.twopass.fdr0.05.merge.bed
148852 HGF-DS11752.hotspot.twopass.fdr0.05.merge.bed
231963 HIPEpiC-DS12684.hotspot.twopass.fdr0.05.merge.bed
153865 HL60-DS11809.hotspot.twopass.fdr0.05.merge.bed
139620 HMEC-DS8680.hotspot.twopass.fdr0.05.merge.bed
176102 HMF-DS13363.hotspot.twopass.fdr0.05.merge.bed
161548 HMVEC_LBl-DS13372.hotspot.twopass.fdr0.05.merge.bed
130544 HMVEC_LLy-DS13185.hotspot.twopass.fdr0.05.merge.bed
115973 HMVEC_dAd-DS12957.hg19.hotspot.twopass.fdr0.05.merge.bed
149796 HMVEC_dBlAd-DS13337.hotspot.twopass.fdr0.05.merge.bed
154291 HMVEC_dBlNeo-DS13242.hotspot.twopass.fdr0.05.merge.bed
115834 HMVEC_dLyAd-DS13261.hotspot.twopass.fdr0.05.merge.bed
139708 HMVEC_dLyNeo-DS13150.hotspot.twopass.fdr0.05.merge.bed
132325 HMVEC_dNeo-DS12937.hotspot.twopass.fdr0.05.merge.bed
217558 HNPCEpiC-DS12467.hotspot.twopass.fdr0.05.merge.bed
125462 HPAEC-DS12916.hg19.hotspot.twopass.fdr0.05.merge.bed
181244 HPAF-DS13411.hotspot.twopass.fdr0.05.merge.bed
147153 HPF-DS13390.hotspot.twopass.fdr0.05.merge.bed
169679 HPdLF-DS13573.hotspot.twopass.fdr0.05.merge.bed
193462 HRCE-DS10666.hotspot.twopass.fdr0.05.merge.bed
197779 HRE-DS10641.hotspot.twopass.fdr0.05.merge.bed
143319 HRGEC-DS13705.hotspot.twopass.fdr0.05.merge.bed
229606 HRPEpiC-DS12583.hotspot.twopass.fdr0.05.merge.bed
234182 HSMM-DS14426.hotspot.twopass.fdr0.05.merge.bed
233756 HSMM_D-DS15542.hotspot.twopass.fdr0.05.merge.bed
115081 HUVEC-DS10060.hotspot.twopass.fdr0.05.merge.bed
170308 HVMF-DS13981.hotspot.twopass.fdr0.05.merge.bed
119081 Hela-DS10011.hotspot.twopass.fdr0.05.merge.bed
196940 IMR90-DS13219.hotspot.twopass.fdr0.05.merge.bed
152487 Jurkat-DS12659.hotspot.twopass.fdr0.05.merge.bed
142920 K562-DS9767.hotspot.twopass.fdr0.05.merge.bed
184899 LNCap-DS14684.hotspot.twopass.fdr0.05.merge.bed
133229 MCF7-DS9445.hotspot.twopass.fdr0.05.merge.bed
214950 Mesendoderm-DS19310.hg19.hotspot.twopass.fdr0.05.merge.bed
131948 NB4-DS12543.hotspot.twopass.fdr0.05.merge.bed
189150 NHA-DS12800.hotspot.twopass.fdr0.05.merge.bed
226683 NHDF_Ad-DS12863.hotspot.twopass.fdr0.05.merge.bed
184888 NHDF_Neo-DS11923.hotspot.twopass.fdr0.05.merge.bed
145886 NHEK-DS11474.hotspot.twopass.fdr0.05.merge.bed
204839 NHLF-DS12829.hotspot.twopass.fdr0.05.merge.bed
93396 NPC-DS18739.hg19.hotspot.twopass.fdr0.05.merge.bed
187959 NT2_D1-DS14575.hg19.hotspot.twopass.fdr0.05.merge.bed
117169 PANC1-DS9955.hotspot.twopass.fdr0.05.merge.bed
176183 PrEC-DS12098.hg19.hotspot.twopass.fdr0.05.merge.bed
171601 RPTEC-DS14061.hotspot.twopass.fdr0.05.merge.bed
195662 SAEC-DS10518.hotspot.twopass.fdr0.05.merge.bed
78279 SKNSH-DS8482.hotspot.twopass.fdr0.05.merge.bed
154275 SK_N_MC-DS14408.hotspot.twopass.fdr0.05.merge.bed
208844 SkMC-DS11949.hotspot.twopass.fdr0.05.merge.bed
247173 Skin_Fibroblasts-DS18224.hg19.hotspot.twopass.fdr0.05.merge.bed
223211 Skin_Fibroblasts-DS18229.hg19.hotspot.twopass.fdr0.05.merge.bed
213125 Skin_Fibroblasts-DS18252.hg19.hotspot.twopass.fdr0.05.merge.bed
201056 Skin_Fibroblasts-DS18256.hg19.hotspot.twopass.fdr0.05.merge.bed
202528 Skin_Keratinocytes-DS18692.hg19.hotspot.twopass.fdr0.05.merge.bed
195706 Skin_Keratinocytes-DS18695.hg19.hotspot.twopass.fdr0.05.merge.bed
178856 Skin_Keratinocytes-DS18714.hg19.hotspot.twopass.fdr0.05.merge.bed
185334 Skin_Keratinocytes-DS18718.hg19.hotspot.twopass.fdr0.05.merge.bed
176447 Skin_Melanocytes-DS18590.hg19.hotspot.twopass.fdr0.05.merge.bed
184177 Skin_Melanocytes-DS18601.hg19.hotspot.twopass.fdr0.05.merge.bed
145534 Trophoblast-DS19317.hg19.hotspot.twopass.fdr0.05.merge.bed
190883 WERI_Rb1-DS13681.hotspot.twopass.fdr0.05.merge.bed
164321 WI_38-DS14315.hotspot.twopass.fdr0.05.merge.bed
206929 WI_38_TAM-DS14323.hotspot.twopass.fdr0.05.merge.bed
193835 fAdrenal-DS12528.hotspot.twopass.fdr0.05.merge.bed
188966 fAdrenal-DS15123.hotspot.twopass.fdr0.05.merge.bed
137386 fAdrenal-DS17319.hg19.hotspot.twopass.fdr0.05.merge.bed
132500 fAdrenal-DS17677.hg19.hotspot.twopass.fdr0.05.merge.bed
195098 fAdrenal-DS20343.hg19.hotspot.twopass.fdr0.05.merge.bed
180502 fBrain-DS11872.hotspot.twopass.fdr0.05.merge.bed
194726 fBrain-DS11877.hotspot.twopass.fdr0.05.merge.bed
194825 fBrain-DS14464.hotspot.twopass.fdr0.05.merge.bed
212166 fBrain-DS14717.hotspot.twopass.fdr0.05.merge.bed
198621 fBrain-DS14718.hotspot.twopass.fdr0.05.merge.bed
172006 fBrain-DS14803.hotspot.twopass.fdr0.05.merge.bed
176230 fBrain-DS14815.hotspot.twopass.fdr0.05.merge.bed
198199 fBrain-DS15453.hotspot.twopass.fdr0.05.merge.bed
168322 fBrain-DS16302.hotspot.twopass.fdr0.05.merge.bed
224498 fBrain-DS20221.hg19.hotspot.twopass.fdr0.05.merge.bed
184031 fBrain-DS20226.hg19.hotspot.twopass.fdr0.05.merge.bed
176864 fBrain-DS20231.hg19.hotspot.twopass.fdr0.05.merge.bed
165873 fHeart-DS12531.hotspot.twopass.fdr0.05.merge.bed
219755 fHeart-DS12810.hotspot.twopass.fdr0.05.merge.bed
155202 fHeart-DS15643.hotspot.twopass.fdr0.05.merge.bed
229496 fHeart-DS15839.hotspot.twopass.fdr0.05.merge.bed
172150 fHeart-DS16018.hotspot.twopass.fdr0.05.merge.bed
177259 fHeart-DS16146.hotspot.twopass.fdr0.05.merge.bed
184750 fHeart-DS16500.hotspot.twopass.fdr0.05.merge.bed
185868 fHeart-DS16582.hotspot.twopass.fdr0.05.merge.bed
172723 fHeart-DS16621.hotspot.twopass.fdr0.05.merge.bed
213120 fHeart-DS16819.hg19.hotspot.twopass.fdr0.05.merge.bed
208883 fHeart-DS19427.hg19.hotspot.twopass.fdr0.05.merge.bed
191453 fHeart-DS19431.hg19.hotspot.twopass.fdr0.05.merge.bed
150373 fIntestine_Lg-DS16027.hotspot.twopass.fdr0.05.merge.bed
162008 fIntestine_Lg-DS16164.hotspot.twopass.fdr0.05.merge.bed
174248 fIntestine_Lg-DS16563.hotspot.twopass.fdr0.05.merge.bed
166730 fIntestine_Lg-DS17094.hg19.hotspot.twopass.fdr0.05.merge.bed
171658 fIntestine_Lg-DS17157.hg19.hotspot.twopass.fdr0.05.merge.bed
93631 fIntestine_Lg-DS17313.hg19.hotspot.twopass.fdr0.05.merge.bed
144512 fIntestine_Lg-DS17422.hg19.hotspot.twopass.fdr0.05.merge.bed
163240 fIntestine_Lg-DS17462.hg19.hotspot.twopass.fdr0.05.merge.bed
74439 fIntestine_Lg-DS17502.hg19.hotspot.twopass.fdr0.05.merge.bed
178922 fIntestine_Lg-DS17647.hg19.hotspot.twopass.fdr0.05.merge.bed
142524 fIntestine_Lg-DS17748.hg19.hotspot.twopass.fdr0.05.merge.bed
166346 fIntestine_Lg-DS17785.hg19.hotspot.twopass.fdr0.05.merge.bed
302521 fIntestine_Lg-DS17841.hg19.hotspot.twopass.fdr0.05.merge.bed
177874 fIntestine_Lg-DS17990.hg19.hotspot.twopass.fdr0.05.merge.bed
160699 fIntestine_Lg-DS18499.hg19.hotspot.twopass.fdr0.05.merge.bed
186603 fIntestine_Sm-DS16559.hotspot.twopass.fdr0.05.merge.bed
131946 fIntestine_Sm-DS16712.hg19.hotspot.twopass.fdr0.05.merge.bed
191311 fIntestine_Sm-DS16822.hotspot.twopass.fdr0.05.merge.bed
163314 fIntestine_Sm-DS16975.hg19.hotspot.twopass.fdr0.05.merge.bed
161283 fIntestine_Sm-DS17092.hg19.hotspot.twopass.fdr0.05.merge.bed
156809 fIntestine_Sm-DS17150.hg19.hotspot.twopass.fdr0.05.merge.bed
149074 fIntestine_Sm-DS17317.hg19.hotspot.twopass.fdr0.05.merge.bed
81058 fIntestine_Sm-DS17425.hg19.hotspot.twopass.fdr0.05.merge.bed
176176 fIntestine_Sm-DS17643.hg19.hotspot.twopass.fdr0.05.merge.bed
177626 fIntestine_Sm-DS17763.hg19.hotspot.twopass.fdr0.05.merge.bed
183224 fIntestine_Sm-DS17808.hg19.hotspot.twopass.fdr0.05.merge.bed
180219 fIntestine_Sm-DS17844.hg19.hotspot.twopass.fdr0.05.merge.bed
161171 fIntestine_Sm-DS18495.hg19.hotspot.twopass.fdr0.05.merge.bed
206515 fKidney-DS10986.hotspot.twopass.fdr0.05.merge.bed
171098 fKidney-DS12635.hotspot.twopass.fdr0.05.merge.bed
257888 fKidney-DS16139.hotspot.twopass.fdr0.05.merge.bed
176366 fKidney-DS16837.hg19.hotspot.twopass.fdr0.05.merge.bed
234944 fKidney-DS17522.hg19.hotspot.twopass.fdr0.05.merge.bed
159386 fKidney-DS17753.hg19.hotspot.twopass.fdr0.05.merge.bed
186294 fKidney-DS20564.hg19.hotspot.twopass.fdr0.05.merge.bed
180009 fKidney_L-DS16446.hotspot.twopass.fdr0.05.merge.bed
193333 fKidney_L-DS16579.hotspot.twopass.fdr0.05.merge.bed
218582 fKidney_L-DS16805.hotspot.twopass.fdr0.05.merge.bed
164582 fKidney_L-DS17140.hg19.hotspot.twopass.fdr0.05.merge.bed
181584 fKidney_L-DS18466.hg19.hotspot.twopass.fdr0.05.merge.bed
195883 fKidney_R-DS15651.hotspot.twopass.fdr0.05.merge.bed
195412 fKidney_R-DS16441.hotspot.twopass.fdr0.05.merge.bed
219783 fKidney_R-DS16801.hotspot.twopass.fdr0.05.merge.bed
173585 fKidney_R-DS17144.hg19.hotspot.twopass.fdr0.05.merge.bed
177948 fKidney_R-DS18463.hg19.hotspot.twopass.fdr0.05.merge.bed
131522 fKidney_renal_cortex-DS17307.hg19.hotspot.twopass.fdr0.05.merge.bed
200589 fKidney_renal_cortex-DS17387.hg19.hotspot.twopass.fdr0.05.merge.bed
240577 fKidney_renal_cortex-DS17455.hg19.hotspot.twopass.fdr0.05.merge.bed
168981 fKidney_renal_cortex-DS17756.hg19.hotspot.twopass.fdr0.05.merge.bed
207143 fKidney_renal_cortex-DS17804.hg19.hotspot.twopass.fdr0.05.merge.bed
182403 fKidney_renal_cortex-DS18428.hg19.hotspot.twopass.fdr0.05.merge.bed
174454 fKidney_renal_cortex-DS19388.hg19.hotspot.twopass.fdr0.05.merge.bed
222263 fKidney_renal_cortex-DS20568.hg19.hotspot.twopass.fdr0.05.merge.bed
208569 fKidney_renal_cortex_L-DS17550.hg19.hotspot.twopass.fdr0.05.merge.bed
195604 fKidney_renal_cortex_L-DS18542.hg19.hotspot.twopass.fdr0.05.merge.bed
158980 fKidney_renal_cortex_L-DS18931.hg19.hotspot.twopass.fdr0.05.merge.bed
228276 fKidney_renal_cortex_L-DS19257.hg19.hotspot.twopass.fdr0.05.merge.bed
201071 fKidney_renal_cortex_R-DS17545.hg19.hotspot.twopass.fdr0.05.merge.bed
178244 fKidney_renal_cortex_R-DS18928.hg19.hotspot.twopass.fdr0.05.merge.bed
210192 fKidney_renal_cortex_R-DS19254.hg19.hotspot.twopass.fdr0.05.merge.bed
218296 fKidney_renal_pelvis-DS17381.hg19.hotspot.twopass.fdr0.05.merge.bed
195827 fKidney_renal_pelvis-DS17451.hg19.hotspot.twopass.fdr0.05.merge.bed
198043 fKidney_renal_pelvis-DS17760.hg19.hotspot.twopass.fdr0.05.merge.bed
121550 fKidney_renal_pelvis-DS18088.hg19.hotspot.twopass.fdr0.05.merge.bed
180063 fKidney_renal_pelvis-DS18431.hg19.hotspot.twopass.fdr0.05.merge.bed
192889 fKidney_renal_pelvis-DS19386.hg19.hotspot.twopass.fdr0.05.merge.bed
240643 fKidney_renal_pelvis-DS20448.hg19.hotspot.twopass.fdr0.05.merge.bed
188106 fKidney_renal_pelvis_L-DS17553.hg19.hotspot.twopass.fdr0.05.merge.bed
174744 fKidney_renal_pelvis_L-DS18666.hg19.hotspot.twopass.fdr0.05.merge.bed
170965 fKidney_renal_pelvis_L-DS18964.hg19.hotspot.twopass.fdr0.05.merge.bed
205707 fKidney_renal_pelvis_L-DS19238.hg19.hotspot.twopass.fdr0.05.merge.bed
180484 fKidney_renal_pelvis_R-DS17548.hg19.hotspot.twopass.fdr0.05.merge.bed
212542 fKidney_renal_pelvis_R-DS18663.hg19.hotspot.twopass.fdr0.05.merge.bed
176160 fKidney_renal_pelvis_R-DS18961.hg19.hotspot.twopass.fdr0.05.merge.bed
185592 fKidney_renal_pelvis_R-DS19235.hg19.hotspot.twopass.fdr0.05.merge.bed
157209 fLung-DS12646.hotspot.twopass.fdr0.05.merge.bed
222817 fLung-DS12817.hotspot.twopass.fdr0.05.merge.bed
195230 fLung-DS13507.hotspot.twopass.fdr0.05.merge.bed
204383 fLung-DS13985.hotspot.twopass.fdr0.05.merge.bed
169079 fLung-DS14666.hotspot.twopass.fdr0.05.merge.bed
205036 fLung-DS14724.hotspot.twopass.fdr0.05.merge.bed
208065 fLung-DS14751.hotspot.twopass.fdr0.05.merge.bed
166865 fLung-DS14809.hotspot.twopass.fdr0.05.merge.bed
193199 fLung-DS14820.hotspot.twopass.fdr0.05.merge.bed
175678 fLung-DS15227.hotspot.twopass.fdr0.05.merge.bed
205166 fLung-DS15461.hotspot.twopass.fdr0.05.merge.bed
184070 fLung-DS15573.hotspot.twopass.fdr0.05.merge.bed
193139 fLung_L-DS15637.hotspot.twopass.fdr0.05.merge.bed
190172 fLung_L-DS16570.hotspot.twopass.fdr0.05.merge.bed
185393 fLung_L-DS17105.hg19.hotspot.twopass.fdr0.05.merge.bed
204719 fLung_L-DS17154.hg19.hotspot.twopass.fdr0.05.merge.bed
189912 fLung_L-DS17464.hg19.hotspot.twopass.fdr0.05.merge.bed
199057 fLung_L-DS17674.hg19.hotspot.twopass.fdr0.05.merge.bed
177772 fLung_L-DS17739.hg19.hotspot.twopass.fdr0.05.merge.bed
156793 fLung_L-DS17835.hg19.hotspot.twopass.fdr0.05.merge.bed
179530 fLung_L-DS17959.hg19.hotspot.twopass.fdr0.05.merge.bed
225490 fLung_L-DS18170.hg19.hotspot.twopass.fdr0.05.merge.bed
195287 fLung_L-DS18421.hg19.hotspot.twopass.fdr0.05.merge.bed
213801 fLung_L-DS18487.hg19.hotspot.twopass.fdr0.05.merge.bed
169546 fLung_R-DS15632.hotspot.twopass.fdr0.05.merge.bed
183292 fLung_R-DS16566.hotspot.twopass.fdr0.05.merge.bed
210352 fLung_R-DS16790.hotspot.twopass.fdr0.05.merge.bed
185040 fLung_R-DS17101.hg19.hotspot.twopass.fdr0.05.merge.bed
174081 fLung_R-DS17162.hg19.hotspot.twopass.fdr0.05.merge.bed
232980 fLung_R-DS17670.hg19.hotspot.twopass.fdr0.05.merge.bed
213279 fLung_R-DS17831.hg19.hotspot.twopass.fdr0.05.merge.bed
191605 fLung_R-DS17954.hg19.hotspot.twopass.fdr0.05.merge.bed
203067 fLung_R-DS18418.hg19.hotspot.twopass.fdr0.05.merge.bed
208159 fLung_R-DS18492.hg19.hotspot.twopass.fdr0.05.merge.bed
203069 fMuscle_arm-DS17432.hg19.hotspot.twopass.fdr0.05.merge.bed
337456 fMuscle_arm-DS17765.hg19.hotspot.twopass.fdr0.05.merge.bed
205495 fMuscle_arm-DS17825.hg19.hotspot.twopass.fdr0.05.merge.bed
197917 fMuscle_arm-DS17848.hg19.hotspot.twopass.fdr0.05.merge.bed
226306 fMuscle_arm-DS18080.hg19.hotspot.twopass.fdr0.05.merge.bed
174345 fMuscle_arm-DS18176.hg19.hotspot.twopass.fdr0.05.merge.bed
146436 fMuscle_arm-DS18379.hg19.hotspot.twopass.fdr0.05.merge.bed
176984 fMuscle_arm-DS18452.hg19.hotspot.twopass.fdr0.05.merge.bed
168344 fMuscle_arm-DS18473.hg19.hotspot.twopass.fdr0.05.merge.bed
172956 fMuscle_arm-DS18559.hg19.hotspot.twopass.fdr0.05.merge.bed
146187 fMuscle_arm-DS18992.hg19.hotspot.twopass.fdr0.05.merge.bed
142759 fMuscle_arm-DS19051.hg19.hotspot.twopass.fdr0.05.merge.bed
178524 fMuscle_arm-DS19053.hg19.hotspot.twopass.fdr0.05.merge.bed
189416 fMuscle_arm-DS19270.hg19.hotspot.twopass.fdr0.05.merge.bed
198837 fMuscle_arm-DS19295.hg19.hotspot.twopass.fdr0.05.merge.bed
201776 fMuscle_arm-DS19380.hg19.hotspot.twopass.fdr0.05.merge.bed
162325 fMuscle_arm-DS19646.hg19.hotspot.twopass.fdr0.05.merge.bed
224371 fMuscle_back-DS17767.hg19.hotspot.twopass.fdr0.05.merge.bed
217609 fMuscle_back-DS17850.hg19.hotspot.twopass.fdr0.05.merge.bed
236932 fMuscle_back-DS18083.hg19.hotspot.twopass.fdr0.05.merge.bed
158551 fMuscle_back-DS18377.hg19.hotspot.twopass.fdr0.05.merge.bed
190043 fMuscle_back-DS18454.hg19.hotspot.twopass.fdr0.05.merge.bed
183776 fMuscle_back-DS18468.hg19.hotspot.twopass.fdr0.05.merge.bed
177363 fMuscle_back-DS18842.hg19.hotspot.twopass.fdr0.05.merge.bed
158179 fMuscle_back-DS19117.hg19.hotspot.twopass.fdr0.05.merge.bed
201975 fMuscle_back-DS19384.hg19.hotspot.twopass.fdr0.05.merge.bed
184249 fMuscle_back-DS19441.hg19.hotspot.twopass.fdr0.05.merge.bed
243174 fMuscle_back-DS19648.hg19.hotspot.twopass.fdr0.05.merge.bed
181358 fMuscle_back-DS20244.hg19.hotspot.twopass.fdr0.05.merge.bed
195397 fMuscle_leg-DS17429.hg19.hotspot.twopass.fdr0.05.merge.bed
188610 fMuscle_leg-DS18386.hg19.hotspot.twopass.fdr0.05.merge.bed
170767 fMuscle_leg-DS18456.hg19.hotspot.twopass.fdr0.05.merge.bed
183441 fMuscle_leg-DS18471.hg19.hotspot.twopass.fdr0.05.merge.bed
140643 fMuscle_leg-DS18844.hg19.hotspot.twopass.fdr0.05.merge.bed
175699 fMuscle_leg-DS19115.hg19.hotspot.twopass.fdr0.05.merge.bed
193611 fMuscle_leg-DS19158.hg19.hotspot.twopass.fdr0.05.merge.bed
209706 fMuscle_leg-DS19272.hg19.hotspot.twopass.fdr0.05.merge.bed
206424 fMuscle_leg-DS19291.hg19.hotspot.twopass.fdr0.05.merge.bed
198293 fMuscle_leg-DS19436.hg19.hotspot.twopass.fdr0.05.merge.bed
202639 fMuscle_leg-DS19643.hg19.hotspot.twopass.fdr0.05.merge.bed
219841 fMuscle_leg-DS20239.hg19.hotspot.twopass.fdr0.05.merge.bed
260925 fMuscle_lower_limb-DS18174.hg19.hotspot.twopass.fdr0.05.merge.bed
205332 fMuscle_trunk-DS17827.hg19.hotspot.twopass.fdr0.05.merge.bed
193464 fMuscle_trunk-DS20242.hg19.hotspot.twopass.fdr0.05.merge.bed
175462 fMuscle_trunk-DS20544.hg19.hotspot.twopass.fdr0.05.merge.bed
160488 fMuscle_upper_back-DS19283.hg19.hotspot.twopass.fdr0.05.merge.bed
185806 fMuscle_upper_limb_sk-DS17661.hg19.hotspot.twopass.fdr0.05.merge.bed
207042 fMuscle_upper_trunk-DS17664.hg19.hotspot.twopass.fdr0.05.merge.bed
238341 fPlacenta-DS17639.hg19.hotspot.twopass.fdr0.05.merge.bed
177081 fPlacenta-DS17744.hg19.hotspot.twopass.fdr0.05.merge.bed
190571 fPlacenta-DS19391.hg19.hotspot.twopass.fdr0.05.merge.bed
175809 fPlacenta-DS20346.hg19.hotspot.twopass.fdr0.05.merge.bed
180651 fSkin-DS10987.hg19.hotspot.twopass.fdr0.05.merge.bed
173713 fSkin_fibro_abdomen-DS19558.hg19.hotspot.twopass.fdr0.05.merge.bed
189289 fSkin_fibro_abdomen-DS19561.hg19.hotspot.twopass.fdr0.05.merge.bed
175776 fSkin_fibro_back-DS19174.hg19.hotspot.twopass.fdr0.05.merge.bed
179055 fSkin_fibro_back-DS19233.hg19.hotspot.twopass.fdr0.05.merge.bed
173109 fSkin_fibro_bicep_L-DS19857.hg19.hotspot.twopass.fdr0.05.merge.bed
172406 fSkin_fibro_bicep_L-DS19867.hg19.hotspot.twopass.fdr0.05.merge.bed
169025 fSkin_fibro_bicep_R-DS19745.hg19.hotspot.twopass.fdr0.05.merge.bed
177366 fSkin_fibro_bicep_R-DS19761.hg19.hotspot.twopass.fdr0.05.merge.bed
198165 fSkin_fibro_leg_L_quad-DS20046.hg19.hotspot.twopass.fdr0.05.merge.bed
191290 fSkin_fibro_leg_L_quad-DS20056.hg19.hotspot.twopass.fdr0.05.merge.bed
165806 fSkin_fibro_leg_R_quad-DS19943.hg19.hotspot.twopass.fdr0.05.merge.bed
182983 fSkin_fibro_leg_R_quad-DS19948.hg19.hotspot.twopass.fdr0.05.merge.bed
166171 fSkin_fibro_scalp-DS19444.hg19.hotspot.twopass.fdr0.05.merge.bed
175729 fSkin_fibro_scalp-DS19449.hg19.hotspot.twopass.fdr0.05.merge.bed
179437 fSkin_fibro_upper_back-DS19696.hg19.hotspot.twopass.fdr0.05.merge.bed
208210 fSkin_fibro_upper_back-DS19706.hg19.hotspot.twopass.fdr0.05.merge.bed
228482 fSpinal_cord-DS18501.hg19.hotspot.twopass.fdr0.05.merge.bed
201241 fSpinal_cord-DS20351.hg19.hotspot.twopass.fdr0.05.merge.bed
188396 fSpinal_cord-DS20530.hg19.hotspot.twopass.fdr0.05.merge.bed
175572 fSpleen-DS17448.hg19.hotspot.twopass.fdr0.05.merge.bed
143685 fStomach-DS16530.hg19.hotspot.twopass.fdr0.05.merge.bed
155745 fStomach-DS17172.hg19.hotspot.twopass.fdr0.05.merge.bed
109170 fStomach-DS17325.hg19.hotspot.twopass.fdr0.05.merge.bed
174705 fStomach-DS17659.hg19.hotspot.twopass.fdr0.05.merge.bed
147927 fStomach-DS17750.hg19.hotspot.twopass.fdr0.05.merge.bed
203854 fStomach-DS17878.hg19.hotspot.twopass.fdr0.05.merge.bed
153781 fStomach-DS17963.hg19.hotspot.twopass.fdr0.05.merge.bed
145667 fStomach-DS18389.hg19.hotspot.twopass.fdr0.05.merge.bed
151574 fStomach-DS18821.hg19.hotspot.twopass.fdr0.05.merge.bed
171791 fStomach-DS20349.hg19.hotspot.twopass.fdr0.05.merge.bed
173094 fStomach-DS20546.hg19.hotspot.twopass.fdr0.05.merge.bed
170843 fTestes-DS18942.hg19.hotspot.twopass.fdr0.05.merge.bed
124748 fThymus-DS16490.hotspot.twopass.fdr0.05.merge.bed
103879 fThymus-DS16841.hg19.hotspot.twopass.fdr0.05.merge.bed
106312 fThymus-DS17323.hg19.hotspot.twopass.fdr0.05.merge.bed
107042 fThymus-DS17474.hg19.hotspot.twopass.fdr0.05.merge.bed
105835 fThymus-DS17875.hg19.hotspot.twopass.fdr0.05.merge.bed
142787 fThymus-DS17876.hg19.hotspot.twopass.fdr0.05.merge.bed
166112 fThymus-DS18382.hg19.hotspot.twopass.fdr0.05.merge.bed
156178 fThymus-DS19287.hg19.hotspot.twopass.fdr0.05.merge.bed
98653 fThymus-DS20335.hg19.hotspot.twopass.fdr0.05.merge.bed
100187 fThymus-DS20341.hg19.hotspot.twopass.fdr0.05.merge.bed
284627 hESCT0-DS11909.hotspot.twopass.fdr0.05.merge.bed
70474 hTH1-DS17592.hg19.hotspot.twopass.fdr0.05.merge.bed
73754 hTH1-DS7840.hotspot.twopass.fdr0.05.merge.bed
78543 hTH17-DS11039.hg19.hotspot.twopass.fdr0.05.merge.bed
111450 hTH2-DS17597.hg19.hotspot.twopass.fdr0.05.merge.bed
80196 hTH2-DS7842.hotspot.twopass.fdr0.05.merge.bed
204668 iPS_19_11-DS15153.hotspot.twopass.fdr0.05.merge.bed
185193 iPS_19_7-DS15148.hotspot.twopass.fdr0.05.merge.bed
193671 iPS_4_7-DS15169.hotspot.twopass.fdr0.05.merge.bed
191788 iPS_6_9-DS15164.hotspot.twopass.fdr0.05.merge.bed
161796 vHMEC-DS18438.hg19.hotspot.twopass.fdr0.05.merge.bed
61200087 total
# 5. Use the intersect tool to do a "full join" of intersections between 1 file versus all other 348.
# Example output (reports each interval from A with each overlap from the 348 other files (filename in column 5):
bedtools intersect -a A549-DS14289.hotspot.twopass.fdr0.05.merge.bed \
-b `ls *.bed grep -v A549-DS14289` \
-sorted \
-wa \
-wb \
-filenames \
| head -250
chr1 10240 10349 6.67949 AG04450-DS12270.hotspot.twopass.fdr0.05.merge.bed chr1 10234 10274 6.49068
chr1 10240 10349 6.67949 BE2_C-DS14625.hotspot.twopass.fdr0.05.merge.bed chr1 10154 10464 12.7743
chr1 10240 10349 6.67949 CD14-DS18065.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10352 14.599
chr1 10240 10349 6.67949 CD19-DS17281.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10184 10352 9.63078
chr1 10240 10349 6.67949 CD20-DS17371.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10185 10283 7.68882
chr1 10240 10349 6.67949 CD20-DS17541.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10144 10436 21.4828
chr1 10240 10349 6.67949 CD3-DS17198.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10283 20.6003
chr1 10240 10349 6.67949 CD34-DS12274.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10354 24.3631
chr1 10240 10349 6.67949 CD3_CordBlood-DS17706.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10316 9.71568
chr1 10240 10349 6.67949 CD4-DS15947.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10348 21.0076
chr1 10240 10349 6.67949 CD56-DS16376.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10348 25.4727
chr1 10240 10349 6.67949 CD8-DS17203.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10350 19.8901
chr1 10240 10349 6.67949 CMK-DS12393.hotspot.twopass.fdr0.05.merge.bed chr1 10185 10366 10.1091
chr1 10240 10349 6.67949 GM12864-DS12431.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10274 8.09201
chr1 10240 10349 6.67949 GM12865-DS12436.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10364 15.618
chr1 10240 10349 6.67949 H1_P18-DS18873.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10277 10.3231
chr1 10240 10349 6.67949 H9_P42-DS18522.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10144 10467 12.2267
chr1 10240 10349 6.67949 HAEpiC-DS12663.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10278 7.27988
chr1 10240 10349 6.67949 HAc-DS14765.hotspot.twopass.fdr0.05.merge.bed chr1 10237 10354 8.51953
chr1 10240 10349 6.67949 HBMEC-DS13817.hotspot.twopass.fdr0.05.merge.bed chr1 10185 10354 10.0367
chr1 10240 10349 6.67949 HCF-DS12501.hotspot.twopass.fdr0.05.merge.bed chr1 10154 10241 7.63969
chr1 10240 10349 6.67949 HCFaa-DS13480.hotspot.twopass.fdr0.05.merge.bed chr1 10223 10354 10.7788
chr1 10240 10349 6.67949 HEPG2-DS7764.hotspot.twopass.fdr0.05.merge.bed chr1 10157 10321 14.048
chr1 10240 10349 6.67949 HESC-DS10167.hotspot.twopass.fdr0.05.merge.bed chr1 10154 10283 8.00927
chr1 10240 10349 6.67949 HL60-DS11809.hotspot.twopass.fdr0.05.merge.bed chr1 10137 10350 20.1214
chr1 10240 10349 6.67949 HMEC-DS8680.hotspot.twopass.fdr0.05.merge.bed chr1 10237 10254 5.25092
chr1 10240 10349 6.67949 HMVEC_LBl-DS13372.hotspot.twopass.fdr0.05.merge.bed chr1 10152 10272 8.35334
chr1 10240 10349 6.67949 HMVEC_LLy-DS13185.hotspot.twopass.fdr0.05.merge.bed chr1 10137 10316 14.1777
chr1 10240 10349 6.67949 HMVEC_dBlAd-DS13337.hotspot.twopass.fdr0.05.merge.bed chr1 10191 10284 8.25012
chr1 10240 10349 6.67949 HMVEC_dBlNeo-DS13242.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10341 10.9783
chr1 10240 10349 6.67949 HMVEC_dLyAd-DS13261.hotspot.twopass.fdr0.05.merge.bed chr1 10136 10315 12.0877
chr1 10240 10349 6.67949 HMVEC_dLyNeo-DS13150.hotspot.twopass.fdr0.05.merge.bed chr1 10159 10333 9.18178
chr1 10240 10349 6.67949 HMVEC_dNeo-DS12937.hotspot.twopass.fdr0.05.merge.bed chr1 10141 10318 6.48693
chr1 10240 10349 6.67949 HPAEC-DS12916.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10283 9.30452
chr1 10240 10349 6.67949 HRPEpiC-DS12583.hotspot.twopass.fdr0.05.merge.bed chr1 10185 10310 8.14065
chr1 10240 10349 6.67949 HUVEC-DS10060.hotspot.twopass.fdr0.05.merge.bed chr1 10139 10354 9.70617
chr1 10240 10349 6.67949 HVMF-DS13981.hotspot.twopass.fdr0.05.merge.bed chr1 10141 10314 12.1775
chr1 10240 10349 6.67949 Hela-DS10011.hotspot.twopass.fdr0.05.merge.bed chr1 10141 10332 13.1898
chr1 10240 10349 6.67949 Jurkat-DS12659.hotspot.twopass.fdr0.05.merge.bed chr1 10132 10463 36.3695
chr1 10240 10349 6.67949 LNCap-DS14684.hotspot.twopass.fdr0.05.merge.bed chr1 10153 10353 12.0462
chr1 10240 10349 6.67949 NB4-DS12543.hotspot.twopass.fdr0.05.merge.bed chr1 10135 10452 23.4394
chr1 10240 10349 6.67949 NPC-DS18739.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10152 10314 12.7949
chr1 10240 10349 6.67949 PANC1-DS9955.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10284 9.48297
chr1 10240 10349 6.67949 SK_N_MC-DS14408.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10243 7.49315
chr1 10240 10349 6.67949 Skin_Keratinocytes-DS18714.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10283 11.1003
chr1 10240 10349 6.67949 Skin_Melanocytes-DS18601.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10351 9.02199
chr1 10240 10349 6.67949 WERI_Rb1-DS13681.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10248 8.70077
chr1 10240 10349 6.67949 fAdrenal-DS12528.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10351 17.946
chr1 10240 10349 6.67949 fAdrenal-DS15123.hotspot.twopass.fdr0.05.merge.bed chr1 10153 10354 15.7978
chr1 10240 10349 6.67949 fBrain-DS11872.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10354 14.7396
chr1 10240 10349 6.67949 fBrain-DS11877.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10353 17.3301
chr1 10240 10349 6.67949 fBrain-DS14464.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10317 19.3572
chr1 10240 10349 6.67949 fBrain-DS14717.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10319 15.0472
chr1 10240 10349 6.67949 fBrain-DS14718.hotspot.twopass.fdr0.05.merge.bed chr1 10152 10318 15.5324
chr1 10240 10349 6.67949 fBrain-DS14803.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10353 11.4338
chr1 10240 10349 6.67949 fBrain-DS14815.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10279 8.58945
chr1 10240 10349 6.67949 fBrain-DS15453.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10348 15.0462
chr1 10240 10349 6.67949 fBrain-DS16302.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10317 17.5645
chr1 10240 10349 6.67949 fBrain-DS20221.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10156 10353 10.2589
chr1 10240 10349 6.67949 fBrain-DS20226.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10153 10350 16.3679
chr1 10240 10349 6.67949 fBrain-DS20231.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10317 8.30034
chr1 10240 10349 6.67949 fHeart-DS12531.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10245 11.1631
chr1 10240 10349 6.67949 fHeart-DS15839.hotspot.twopass.fdr0.05.merge.bed chr1 10159 10283 7.37873
chr1 10240 10349 6.67949 fHeart-DS16500.hotspot.twopass.fdr0.05.merge.bed chr1 10268 10284 8.75879
chr1 10240 10349 6.67949 fHeart-DS16582.hotspot.twopass.fdr0.05.merge.bed chr1 10185 10281 8.34126
chr1 10240 10349 6.67949 fHeart-DS16621.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10354 15.5358
chr1 10240 10349 6.67949 fHeart-DS16819.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10318 16.0325
chr1 10240 10349 6.67949 fHeart-DS19427.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10184 10248 6.17255
chr1 10240 10349 6.67949 fHeart-DS19431.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10159 10280 8.65929
chr1 10240 10349 6.67949 fIntestine_Lg-DS16027.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10313 10.5064
chr1 10240 10349 6.67949 fIntestine_Lg-DS16164.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10356 17.2282
chr1 10240 10349 6.67949 fIntestine_Lg-DS16563.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10354 15.2057
chr1 10240 10349 6.67949 fIntestine_Lg-DS17094.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10157 10353 7.15321
chr1 10240 10349 6.67949 fIntestine_Lg-DS17422.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10317 12.8024
chr1 10240 10349 6.67949 fIntestine_Lg-DS17462.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10244 7.08612
chr1 10240 10349 6.67949 fIntestine_Lg-DS17502.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10354 15.1272
chr1 10240 10349 6.67949 fIntestine_Lg-DS17647.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10353 14.5498
chr1 10240 10349 6.67949 fIntestine_Lg-DS17748.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10154 10317 7.35024
chr1 10240 10349 6.67949 fIntestine_Lg-DS17785.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10271 10318 6.43129
chr1 10240 10349 6.67949 fIntestine_Lg-DS17841.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10152 10347 14.8836
chr1 10240 10349 6.67949 fIntestine_Lg-DS17990.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10247 10317 7.46297
chr1 10240 10349 6.67949 fIntestine_Lg-DS18499.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10273 8.11835
chr1 10240 10349 6.67949 fIntestine_Sm-DS16559.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10315 9.71568
chr1 10240 10349 6.67949 fIntestine_Sm-DS16712.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10353 7.76326
chr1 10240 10349 6.67949 fIntestine_Sm-DS16822.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10284 9.704
chr1 10240 10349 6.67949 fIntestine_Sm-DS16975.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10154 10453 11.1586
chr1 10240 10349 6.67949 fIntestine_Sm-DS17092.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10353 8.13432
chr1 10240 10349 6.67949 fIntestine_Sm-DS17150.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10316 10.9954
chr1 10240 10349 6.67949 fIntestine_Sm-DS17425.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10283 17.8935
chr1 10240 10349 6.67949 fIntestine_Sm-DS17643.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10312 10.6141
chr1 10240 10349 6.67949 fIntestine_Sm-DS17808.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10353 12.6573
chr1 10240 10349 6.67949 fIntestine_Sm-DS17844.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10155 10318 9.09273
chr1 10240 10349 6.67949 fKidney-DS10986.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10436 19.9068
chr1 10240 10349 6.67949 fKidney-DS12635.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10353 19.4873
chr1 10240 10349 6.67949 fKidney-DS16139.hotspot.twopass.fdr0.05.merge.bed chr1 10153 10353 14.1384
chr1 10240 10349 6.67949 fKidney-DS16837.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10156 10351 16.9424
chr1 10240 10349 6.67949 fKidney-DS17522.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10184 10351 10.7858
chr1 10240 10349 6.67949 fKidney-DS17753.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10315 13.4059
chr1 10240 10349 6.67949 fKidney-DS20564.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10182 10276 5.92948
chr1 10240 10349 6.67949 fKidney_L-DS16579.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10313 14.1777
chr1 10240 10349 6.67949 fKidney_L-DS16805.hotspot.twopass.fdr0.05.merge.bed chr1 10184 10256 6.53359
chr1 10240 10349 6.67949 fKidney_L-DS17140.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10352 9.15485
chr1 10240 10349 6.67949 fKidney_L-DS18466.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10154 10317 18.4102
chr1 10240 10349 6.67949 fKidney_R-DS15651.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10465 18.3148
chr1 10240 10349 6.67949 fKidney_R-DS16441.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10317 14.3547
chr1 10240 10349 6.67949 fKidney_R-DS16801.hotspot.twopass.fdr0.05.merge.bed chr1 10185 10318 10.0327
chr1 10240 10349 6.67949 fKidney_R-DS18463.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10351 16.5145
chr1 10240 10349 6.67949 fKidney_renal_cortex-DS17307.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10243 10283 8.42146
chr1 10240 10349 6.67949 fKidney_renal_cortex-DS17387.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10154 10349 12.0395
chr1 10240 10349 6.67949 fKidney_renal_cortex-DS17455.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10145 10283 11.0592
chr1 10240 10349 6.67949 fKidney_renal_cortex-DS17756.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10241 10317 6.62828
chr1 10240 10349 6.67949 fKidney_renal_cortex-DS17804.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10152 10318 10.3683
chr1 10240 10349 6.67949 fKidney_renal_cortex-DS18428.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10218 10314 7.55417
chr1 10240 10349 6.67949 fKidney_renal_cortex-DS19388.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10185 10283 7.16707
chr1 10240 10349 6.67949 fKidney_renal_cortex-DS20568.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10158 10353 9.26191
chr1 10240 10349 6.67949 fKidney_renal_cortex_L-DS17550.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10353 14.4598
chr1 10240 10349 6.67949 fKidney_renal_cortex_L-DS18542.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10281 9.6503
chr1 10240 10349 6.67949 fKidney_renal_cortex_L-DS19257.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10318 17.1893
chr1 10240 10349 6.67949 fKidney_renal_cortex_R-DS18928.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10231 10277 8.00945
chr1 10240 10349 6.67949 fKidney_renal_cortex_R-DS19254.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10353 19.7079
chr1 10240 10349 6.67949 fKidney_renal_pelvis-DS17381.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10315 9.3329
chr1 10240 10349 6.67949 fKidney_renal_pelvis-DS17451.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10157 10353 11.3435
chr1 10240 10349 6.67949 fKidney_renal_pelvis-DS17760.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10312 11.1703
chr1 10240 10349 6.67949 fKidney_renal_pelvis-DS18088.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10183 10317 5.60345
chr1 10240 10349 6.67949 fKidney_renal_pelvis-DS18431.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10313 9.65532
chr1 10240 10349 6.67949 fKidney_renal_pelvis-DS19386.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10314 11.8992
chr1 10240 10349 6.67949 fKidney_renal_pelvis-DS20448.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10153 10352 11.3435
chr1 10240 10349 6.67949 fKidney_renal_pelvis_L-DS17553.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10153 10312 14.4522
chr1 10240 10349 6.67949 fKidney_renal_pelvis_L-DS18964.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10153 10283 10.7675
chr1 10240 10349 6.67949 fKidney_renal_pelvis_L-DS19238.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10270 7.42828
chr1 10240 10349 6.67949 fKidney_renal_pelvis_R-DS17548.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10318 18.2104
chr1 10240 10349 6.67949 fKidney_renal_pelvis_R-DS18663.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10314 10.0238
chr1 10240 10349 6.67949 fKidney_renal_pelvis_R-DS18961.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10346 14.4598
chr1 10240 10349 6.67949 fKidney_renal_pelvis_R-DS19235.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10317 9.1792
chr1 10240 10349 6.67949 fLung-DS12646.hotspot.twopass.fdr0.05.merge.bed chr1 10152 10352 18.2999
chr1 10240 10349 6.67949 fLung-DS12817.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10316 8.02952
chr1 10240 10349 6.67949 fLung-DS13507.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10313 15.6183
chr1 10240 10349 6.67949 fLung-DS13985.hotspot.twopass.fdr0.05.merge.bed chr1 10152 10354 15.3187
chr1 10240 10349 6.67949 fLung-DS14666.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10284 10.5323
chr1 10240 10349 6.67949 fLung-DS14724.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10279 8.01123
chr1 10240 10349 6.67949 fLung-DS14751.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10275 7.71596
chr1 10240 10349 6.67949 fLung-DS14820.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10350 9.94189
chr1 10240 10349 6.67949 fLung-DS15227.hotspot.twopass.fdr0.05.merge.bed chr1 10153 10280 11.3367
chr1 10240 10349 6.67949 fLung-DS15461.hotspot.twopass.fdr0.05.merge.bed chr1 10156 10347 11.6548
chr1 10240 10349 6.67949 fLung-DS15573.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10316 15.7728
chr1 10240 10349 6.67949 fLung_L-DS15637.hotspot.twopass.fdr0.05.merge.bed chr1 10153 10350 14.0035
chr1 10240 10349 6.67949 fLung_L-DS16570.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10354 10.4104
chr1 10240 10349 6.67949 fLung_L-DS17105.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10349 18.7627
chr1 10240 10349 6.67949 fLung_L-DS17154.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10144 10354 19.4213
chr1 10240 10349 6.67949 fLung_L-DS17464.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10317 12.1521
chr1 10240 10349 6.67949 fLung_L-DS17674.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10160 10244 8.3405
chr1 10240 10349 6.67949 fLung_L-DS17739.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10321 11.3367
chr1 10240 10349 6.67949 fLung_L-DS18170.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10465 23.3848
chr1 10240 10349 6.67949 fLung_L-DS18421.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10146 10317 18.0522
chr1 10240 10349 6.67949 fLung_L-DS18487.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10314 14.5337
chr1 10240 10349 6.67949 fLung_R-DS15632.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10319 13.3625
chr1 10240 10349 6.67949 fLung_R-DS16566.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10354 12.7403
chr1 10240 10349 6.67949 fLung_R-DS16790.hotspot.twopass.fdr0.05.merge.bed chr1 10240 10354 8.14938
chr1 10240 10349 6.67949 fLung_R-DS17101.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10146 10454 16.169
chr1 10240 10349 6.67949 fLung_R-DS17162.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10435 15.3087
chr1 10240 10349 6.67949 fLung_R-DS17670.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10318 10.7471
chr1 10240 10349 6.67949 fLung_R-DS17831.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10317 26.7344
chr1 10240 10349 6.67949 fLung_R-DS17954.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10356 14.6461
chr1 10240 10349 6.67949 fLung_R-DS18418.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10351 21.5803
chr1 10240 10349 6.67949 fLung_R-DS18492.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10317 14.2445
chr1 10240 10349 6.67949 fMuscle_arm-DS17432.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10153 10354 14.7848
chr1 10240 10349 6.67949 fMuscle_arm-DS17765.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10346 23.0804
chr1 10240 10349 6.67949 fMuscle_arm-DS17825.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10350 17.2515
chr1 10240 10349 6.67949 fMuscle_arm-DS17848.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10318 9.26191
chr1 10240 10349 6.67949 fMuscle_arm-DS18080.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10318 25.4652
chr1 10240 10349 6.67949 fMuscle_arm-DS18176.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10349 20.1197
chr1 10240 10349 6.67949 fMuscle_arm-DS18379.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10316 13.2369
chr1 10240 10349 6.67949 fMuscle_arm-DS18452.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10283 20.5433
chr1 10240 10349 6.67949 fMuscle_arm-DS18473.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10146 10349 18.0583
chr1 10240 10349 6.67949 fMuscle_arm-DS18559.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10346 19.5568
chr1 10240 10349 6.67949 fMuscle_arm-DS18992.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10353 13.6633
chr1 10240 10349 6.67949 fMuscle_arm-DS19051.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10353 18.9041
chr1 10240 10349 6.67949 fMuscle_arm-DS19053.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10346 20.7502
chr1 10240 10349 6.67949 fMuscle_arm-DS19270.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10316 17.946
chr1 10240 10349 6.67949 fMuscle_arm-DS19295.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10350 13.4338
chr1 10240 10349 6.67949 fMuscle_arm-DS19380.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10353 13.6295
chr1 10240 10349 6.67949 fMuscle_arm-DS19646.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10352 16.8563
chr1 10240 10349 6.67949 fMuscle_back-DS17767.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10468 28.184
chr1 10240 10349 6.67949 fMuscle_back-DS17850.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10281 12.3104
chr1 10240 10349 6.67949 fMuscle_back-DS18083.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10351 21.8464
chr1 10240 10349 6.67949 fMuscle_back-DS18377.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10144 10346 14.06
chr1 10240 10349 6.67949 fMuscle_back-DS18454.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10283 14.6707
chr1 10240 10349 6.67949 fMuscle_back-DS18468.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10347 12.5877
chr1 10240 10349 6.67949 fMuscle_back-DS18842.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10352 12.2799
chr1 10240 10349 6.67949 fMuscle_back-DS19117.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10314 9.32582
chr1 10240 10349 6.67949 fMuscle_back-DS19384.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10350 17.0807
chr1 10240 10349 6.67949 fMuscle_back-DS19441.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10316 16.3679
chr1 10240 10349 6.67949 fMuscle_back-DS19648.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10351 16.1786
chr1 10240 10349 6.67949 fMuscle_back-DS20244.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10318 13.3625
chr1 10240 10349 6.67949 fMuscle_leg-DS17429.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10236 10464 10.7547
chr1 10240 10349 6.67949 fMuscle_leg-DS18386.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10152 10267 9.65532
chr1 10240 10349 6.67949 fMuscle_leg-DS18456.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10311 18.9559
chr1 10240 10349 6.67949 fMuscle_leg-DS18471.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10317 13.6547
chr1 10240 10349 6.67949 fMuscle_leg-DS18844.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10283 9.65532
chr1 10240 10349 6.67949 fMuscle_leg-DS19115.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10352 20.3928
chr1 10240 10349 6.67949 fMuscle_leg-DS19158.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10318 16.9424
chr1 10240 10349 6.67949 fMuscle_leg-DS19272.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10144 10314 14.6574
chr1 10240 10349 6.67949 fMuscle_leg-DS19291.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10318 16.734
chr1 10240 10349 6.67949 fMuscle_leg-DS19436.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10348 15.2572
chr1 10240 10349 6.67949 fMuscle_leg-DS19643.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10317 14.8593
chr1 10240 10349 6.67949 fMuscle_leg-DS20239.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10317 10.8976
chr1 10240 10349 6.67949 fMuscle_lower_limb-DS18174.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10352 26.4774
chr1 10240 10349 6.67949 fMuscle_trunk-DS17827.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10316 12.5448
chr1 10240 10349 6.67949 fMuscle_trunk-DS20242.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10457 16.2643
chr1 10240 10349 6.67949 fMuscle_trunk-DS20544.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10316 13.5274
chr1 10240 10349 6.67949 fMuscle_upper_back-DS19283.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10351 16.022
chr1 10240 10349 6.67949 fMuscle_upper_trunk-DS17664.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10349 17.4448
chr1 10240 10349 6.67949 fPlacenta-DS17639.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10146 10463 27.4619
chr1 10240 10349 6.67949 fPlacenta-DS17744.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10462 16.465
chr1 10240 10349 6.67949 fPlacenta-DS19391.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10464 16.4524
chr1 10240 10349 6.67949 fPlacenta-DS20346.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10467 17.4679
chr1 10240 10349 6.67949 fSkin-DS10987.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10453 19.9909
chr1 10240 10349 6.67949 fSkin_fibro_bicep_R-DS19761.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10182 10280 6.32032
chr1 10240 10349 6.67949 fSkin_fibro_scalp-DS19449.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10244 8.18684
chr1 10240 10349 6.67949 fSpinal_cord-DS18501.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10351 10.2632
chr1 10240 10349 6.67949 fSpinal_cord-DS20351.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10349 13.1904
chr1 10240 10349 6.67949 fSpinal_cord-DS20530.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10352 20.8556
chr1 10240 10349 6.67949 fSpleen-DS17448.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10354 14.1384
chr1 10240 10349 6.67949 fStomach-DS16530.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10353 13.6547
chr1 10240 10349 6.67949 fStomach-DS17172.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10153 10350 13.1898
chr1 10240 10349 6.67949 fStomach-DS17325.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10352 9.05152
chr1 10240 10349 6.67949 fStomach-DS17659.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10187 10283 6.92622
chr1 10240 10349 6.67949 fStomach-DS17750.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10184 10280 7.16707
chr1 10240 10349 6.67949 fStomach-DS17878.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10354 14.041
chr1 10240 10349 6.67949 fStomach-DS17963.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10183 10244 7.62534
chr1 10240 10349 6.67949 fStomach-DS18389.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10312 12.2182
chr1 10240 10349 6.67949 fStomach-DS18821.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10149 10352 13.836
chr1 10240 10349 6.67949 fStomach-DS20349.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10156 10351 12.2804
chr1 10240 10349 6.67949 fStomach-DS20546.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10152 10317 8.26576
chr1 10240 10349 6.67949 fTestes-DS18942.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10353 18.0522
chr1 10240 10349 6.67949 fThymus-DS16490.hotspot.twopass.fdr0.05.merge.bed chr1 10247 10348 7.00076
chr1 10240 10349 6.67949 fThymus-DS16841.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10353 12.3039
chr1 10240 10349 6.67949 fThymus-DS17474.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10317 10.8976
chr1 10240 10349 6.67949 fThymus-DS17876.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10150 10353 15.0569
chr1 10240 10349 6.67949 fThymus-DS18382.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10353 21.9792
chr1 10240 10349 6.67949 fThymus-DS19287.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10147 10347 13.2132
chr1 10240 10349 6.67949 fThymus-DS20335.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10231 10317 7.72489
chr1 10240 10349 6.67949 fThymus-DS20341.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10151 10273 9.26191
chr1 10240 10349 6.67949 hESCT0-DS11909.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10365 14.06
chr1 10240 10349 6.67949 hTH1-DS7840.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10320 39.2328
chr1 10240 10349 6.67949 hTH17-DS11039.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10152 10272 8.77437
chr1 10240 10349 6.67949 hTH2-DS17597.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10148 10314 14.8923
chr1 10240 10349 6.67949 hTH2-DS7842.hotspot.twopass.fdr0.05.merge.bed chr1 10152 10321 21.3007
chr1 10240 10349 6.67949 iPS_4_7-DS15169.hotspot.twopass.fdr0.05.merge.bed chr1 10159 10284 7.00135
chr1 10240 10349 6.67949 vHMEC-DS18438.hg19.hotspot.twopass.fdr0.05.merge.bed chr1 10152 10283 8.52307
# Now run it for reals.
time bedtools intersect -a A549-DS14289.hotspot.twopass.fdr0.05.merge.bed \
-b `ls *.bed grep -v A549-DS14289` \
-sorted \
-wa \
-wb \
-filenames > /dev/null
49.89s user 1.64s system 99% cpu 51.601 total
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment