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@arq5x
Created December 4, 2014 23:42
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multline
attributes:
name: cpg
version: 0.1
recipe:
full:
recipe_type: bash
recipe_cmds:
- >
mysql --user=genome --host=genome-mysql.cse.ucsc.edu \
-A -N -B -D hg19 \
-e "SELECT chrom, chromStart, chromEnd, perGc, name from cpgIslandExt" \
| awk '{print $0"\thi"}'
recipe_outfiles:
- ucsc.human.b37.cpg
@sjackman
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sjackman commented Dec 5, 2014

Very much bike-shed painting comments, but perhaps change
recipe_type -> type b/c recipe is redundant
recipe_cmds -> commands b/c ditto and real word better than abbreviation
recipe_outfiles -> output b/c ditto

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