Created
October 8, 2015 09:37
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Making sure the data I'm using for the tutorial and paper are the same as the example data.
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| adurvasu@farm:~/rilab/aw-tutorial/data$ md5sum ?.sub.bam | |
| b78c7735c1325782553e6b59b52cfc84 0.sub.bam | |
| 1759a99e93a08fff73bf47f5ef6ba576 1.sub.bam | |
| dbae3c832c94618a8281f7ec18154237 2.sub.bam | |
| c29c78c8a073498b59d54180d833697b 3.sub.bam | |
| eefa22f9dfb92f9d44aeb9acfb016e54 4.sub.bam | |
| 87b364a444edc5fa837fc337d661c537 5.sub.bam | |
| 6567145497fda85bea95b9da0fa301a0 6.sub.bam | |
| 393e90693dc84d45316651afd03d9026 7.sub.bam | |
| 6a662054b4ee9bd7314a8ceeb490fbe8 8.sub.bam | |
| dc82b3a5b35ef8e34b2899e439a71cd1 9.sub.bam | |
| adurvasu@farm:~/rilab/aw-tutorial/data$ wget http://de.iplantcollaborative.org/dl/d/3A541C91-A66A-4651-949D-4E65028C4A2F/iplant.zip | |
| --2015-10-08 02:34:13-- http://de.iplantcollaborative.org/dl/d/3A541C91-A66A-4651-949D-4E65028C4A2F/iplant.zip | |
| Resolving de.iplantcollaborative.org (de.iplantcollaborative.org)... 128.196.254.62 | |
| Connecting to de.iplantcollaborative.org (de.iplantcollaborative.org)|128.196.254.62|:80... connected. | |
| HTTP request sent, awaiting response... 301 Moved Permanently | |
| Location: https://de.iplantcollaborative.org/dl/d/3A541C91-A66A-4651-949D-4E65028C4A2F/iplant.zip [following] | |
| --2015-10-08 02:34:14-- https://de.iplantcollaborative.org/dl/d/3A541C91-A66A-4651-949D-4E65028C4A2F/iplant.zip | |
| Connecting to de.iplantcollaborative.org (de.iplantcollaborative.org)|128.196.254.62|:443... connected. | |
| HTTP request sent, awaiting response... 200 OK | |
| Length: unspecified | |
| Saving to: ‘iplant.zip.1’ | |
| [ <=> ] 364,836,981 14.3MB/s in 34s | |
| 2015-10-08 02:34:55 (10.1 MB/s) - ‘iplant.zip.1’ saved [364836981] | |
| adurvasu@farm:~/rilab/aw-tutorial/data$ unzip iplant.zip | |
| Archive: iplant.zip | |
| creating: iplant/ | |
| inflating: iplant/0.sub.bam | |
| inflating: iplant/1.sub.bam | |
| inflating: iplant/10.sub.bam | |
| inflating: iplant/11.sub.bam | |
| inflating: iplant/2.sub.bam | |
| inflating: iplant/3.sub.bam | |
| inflating: iplant/4.sub.bam | |
| inflating: iplant/5.sub.bam | |
| inflating: iplant/6.sub.bam | |
| inflating: iplant/7.sub.bam | |
| inflating: iplant/8.sub.bam | |
| inflating: iplant/9.sub.bam | |
| inflating: iplant/ancestral.merid_japonica_chr.fa.gz | |
| inflating: iplant/reference.Oryza_sativa.IRGSP-1.0.23.dna.genome_chr.fa.gz | |
| inflating: iplant/test_F.txt | |
| inflating: iplant/test_samples.txt | |
| adurvasu@farm:~/rilab/aw-tutorial/data$ cd iplant/ | |
| adurvasu@farm:~/rilab/aw-tutorial/data/iplant$ md5sum ?.sub.bam | |
| b78c7735c1325782553e6b59b52cfc84 0.sub.bam | |
| 1759a99e93a08fff73bf47f5ef6ba576 1.sub.bam | |
| dbae3c832c94618a8281f7ec18154237 2.sub.bam | |
| c29c78c8a073498b59d54180d833697b 3.sub.bam | |
| eefa22f9dfb92f9d44aeb9acfb016e54 4.sub.bam | |
| 87b364a444edc5fa837fc337d661c537 5.sub.bam | |
| 6567145497fda85bea95b9da0fa301a0 6.sub.bam | |
| 393e90693dc84d45316651afd03d9026 7.sub.bam | |
| 6a662054b4ee9bd7314a8ceeb490fbe8 8.sub.bam | |
| dc82b3a5b35ef8e34b2899e439a71cd1 9.sub.bam |
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