Created
March 20, 2012 14:49
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Querying CIFStore with Python
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for res in db.structures.find({"entry.id": "2P33"}, {'pdbx_entity_nonpoly.comp_id': 1}): | |
print res | |
{u'pdbx_entity_nonpoly': [{u'comp_id': u'J07'}, {u'comp_id': u'HOH'}], u'_id': u'2P33'} |
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from pymongo import Connection | |
connection = Connection('localhost', 27017) | |
db = connection.cifstore | |
db.structures.count() | |
79177 |
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for res in db.structures.find({"pdbx_entity_nonpoly.comp_id":"STI"}, fields=["struct_ref.pdbx_db_accession"]): | |
print res | |
{u'_id': u'2OIQ', u'struct_ref': {}} | |
{u'_id': u'3HEC', u'struct_ref': {}} | |
{u'_id': u'1XBB', u'struct_ref': {}} | |
{u'_id': u'3FW1', u'struct_ref': {}} | |
{u'_id': u'2PL0', u'struct_ref': {}} | |
{u'_id': u'1OPJ', u'struct_ref': {}} | |
{u'_id': u'1T46', u'struct_ref': [{u'pdbx_db_accession': u'P10721'}, {u'pdbx_db_accession': u'4557695'}]} | |
{u'_id': u'1IEP', u'struct_ref': {u'pdbx_db_accession': u'P00520'}} | |
{u'_id': u'2HYY', u'struct_ref': {}} | |
{u'_id': u'3GVU', u'struct_ref': {}} | |
{u'_id': u'3K5V', u'struct_ref': {u'pdbx_db_accession': u'P00520'}} | |
{u'_id': u'3MS9', u'struct_ref': {u'pdbx_db_accession': u'P00520'}} | |
{u'_id': u'3MSS', u'struct_ref': {u'pdbx_db_accession': u'P00520'}} | |
{u'_id': u'3OEZ', u'struct_ref': {}} | |
{u'_id': u'3PYY', u'struct_ref': {}} |
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