ashkanpakzad

import nibabel as nib
import numpy as np

# set paths and params
in_path = 'case.nii.gz'
out_path = 'case_out.nii.gz'
interspace = 2

# load data
img = nib.load(in_path)

ashkanpakzad

# By Ashkan Pakzad (ashkanpakzad.github.io) 2021 

# This is a python script to batch rip several CD/DVD optical disks.
# It should only require you to change the disk when ejected and the rest is automated.
# Only works on mac as it uses mac's drutil commands to trigger the systems optical 
# disk tray.

# Only runs on mac, dependent on pypi package progress, 
# pip install progress

ashkanpakzad

import nibabel as nib
import dicom_numpy
import os
import numpy as np

pathtodicom = '/path/to/dicom/'
# get list of dicom images from directory that make up the 3D image
dicomlist = [pathtodicom + f for f in os.listdir(pathtodicom)]

# load dicom volume

ashkanpakzad

import os
import pydicom

# paths to data and save location
filepath = './data/' # directory containing the dicom series
dcmprefix = 'Image_' # Individual dicom file prefix before number
firstdcm = dcmprefix + '%04d.DICOM' %1 # first dicom image to inspect metadata fields
newdir = './data-edited/' # directory to save new metadata fields

# Find total number of dicom files in series

ashkanpakzad

import os
import pydicom

# paths to data and save location
filepath = './data/' # directory containing the dicom series
dcmprefix = 'Image_' # Individual dicom file prefix before number
firstdcm = dcmprefix + '%04d.DICOM' %1 # first dicom image to inspect metadata fields
newdir = './data-edited/' # directory to save new metadata fields

# Find total number of dicom files in series

ashkanpakzad

import os
import pydicom

# paths to data and save location
filepath = './data/' # directory containing the dicom series
dcmprefix = 'Image_' # Individual dicom file prefix before number
firstdcm = dcmprefix + '%04d.DICOM' %1 # first dicom image to inspect metadata fields
newdir = './data-edited/' # directory to save new metadata fields

# Find total number of dicom files in series