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February 27, 2015 11:37
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coam on stampede - 0.1.3-beta-5-g83107c8
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| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] radical.pilot version: 0.23 (v0.23) | |
| 2015:02:27 11:35:09 6042 MainThread saga : [INFO ] saga-python version: v0.26 | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.myproxy | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.myproxy for saga.Context API with URL scheme(s) ['myproxy://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.x509 | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.x509 for saga.Context API with URL scheme(s) ['x509://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.ssh | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.ssh for saga.Context API with URL scheme(s) ['ssh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.userpass | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.userpass for saga.Context API with URL scheme(s) ['userpass://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.shell.shell_job | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_job for saga.job.Service API with URL scheme(s) ['fork://', 'local://', 'ssh://', 'gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_job for saga.job.Job API with URL scheme(s) ['fork://', 'local://', 'ssh://', 'gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.shell.shell_file | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_file for saga.namespace.Directory API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_file for saga.namespace.Entry API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_file for saga.filesystem.Directory API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_file for saga.filesystem.File API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.shell.shell_resource | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [WARNING ] Skipping adaptor saga.adaptors.shell.shell_resource: beta versions are disabled (v0.1.beta) | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.redis.redis_advert | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [WARNING ] Skipping adaptor saga.adaptors.redis.redis_advert 1: module loading failed: No module named redis | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.sge.sgejob | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.sge.sgejob for saga.job.Service API with URL scheme(s) ['sge://', 'sge+ssh://', 'sge+gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.sge.sgejob for saga.job.Job API with URL scheme(s) ['sge://', 'sge+ssh://', 'sge+gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.pbs.pbsjob | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.pbs.pbsjob for saga.job.Service API with URL scheme(s) ['pbs://', 'pbs+ssh://', 'pbs+gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.pbs.pbsjob for saga.job.Job API with URL scheme(s) ['pbs://', 'pbs+ssh://', 'pbs+gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.lsf.lsfjob | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.lsf.lsfjob for saga.job.Service API with URL scheme(s) ['lsf://', 'lsf+ssh://', 'lsf+gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.lsf.lsfjob for saga.job.Job API with URL scheme(s) ['lsf://', 'lsf+ssh://', 'lsf+gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.condor.condorjob | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.condor.condorjob for saga.job.Service API with URL scheme(s) ['condor://', 'condor+ssh://', 'condor+gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.condor.condorjob for saga.job.Job API with URL scheme(s) ['condor://', 'condor+ssh://', 'condor+gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.slurm.slurm_job | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.slurm.slurm_job for saga.job.Service API with URL scheme(s) ['slurm://', 'slurm+ssh://', 'slurm+gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.slurm.slurm_job for saga.job.Job API with URL scheme(s) ['slurm://', 'slurm+ssh://', 'slurm+gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.http.http_file | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.http.http_file for saga.namespace.Entry API with URL scheme(s) ['http://', 'https://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.http.http_file for saga.filesystem.File API with URL scheme(s) ['http://', 'https://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.aws.ec2_resource | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.aws.ec2_resource for saga.Context API with URL scheme(s) ['ec2://', 'ec2_keypair://', 'openstack://', 'eucalyptus://', 'euca://', 'aws://', 'amazon://', 'http://', 'https://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.aws.ec2_resource for saga.resource.Manager API with URL scheme(s) ['ec2://', 'ec2_keypair://', 'openstack://', 'eucalyptus://', 'euca://', 'aws://', 'amazon://', 'http://', 'https://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.aws.ec2_resource for saga.resource.Compute API with URL scheme(s) ['ec2://', 'ec2_keypair://', 'openstack://', 'eucalyptus://', 'euca://', 'aws://', 'amazon://', 'http://', 'https://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.loadl.loadljob | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.loadl.loadljob for saga.job.Service API with URL scheme(s) ['loadl://', 'loadl+ssh://', 'loadl+gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.loadl.loadljob for saga.job.Job API with URL scheme(s) ['loadl://', 'loadl+ssh://', 'loadl+gsissh://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.globus_online.go_file | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.globus_online.go_file for saga.namespace.Directory API with URL scheme(s) ['go://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.globus_online.go_file for saga.namespace.Entry API with URL scheme(s) ['go://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.globus_online.go_file for saga.filesystem.Directory API with URL scheme(s) ['go://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.globus_online.go_file for saga.filesystem.File API with URL scheme(s) ['go://'] | |
| 2015:02:27 11:35:09 6042 MainThread saga.saga.adaptor.ssh : [INFO ] ignore ssh key at /users/ardita/.ssh/known_hosts.old (no public key: /users/ardita/.ssh/known_hosts.old.pub) | |
| 2015:02:27 11:35:09 6042 MainThread saga.saga.adaptor.ssh : [INFO ] ignore ssh key at /users/ardita/.ssh/k.dat (no public key: /users/ardita/.ssh/k.dat.pub) | |
| 2015:02:27 11:35:09 6042 MainThread saga.saga.adaptor.ssh : [INFO ] default ssh key at /users/ardita/.ssh/id_rsa | |
| 2015:02:27 11:35:09 6042 MainThread saga.saga.adaptor.ssh : [INFO ] ignore ssh key at /users/ardita/.ssh/environment (no public key: /users/ardita/.ssh/environment.pub) | |
| 2015:02:27 11:35:09 6042 MainThread saga.saga.adaptor.ssh : [INFO ] ignore ssh key at /users/ardita/.ssh/known_hosts (no public key: /users/ardita/.ssh/known_hosts.pub) | |
| 2015:02:27 11:35:09 6042 MainThread saga.saga.adaptor.ssh : [INFO ] ignore ssh key at /users/ardita/.ssh/authorized_keys (no public key: /users/ardita/.ssh/authorized_keys.pub) | |
| 2015:02:27 11:35:09 6042 MainThread saga.saga.adaptor.ssh : [INFO ] ignore ssh key at /users/ardita/.ssh/config (no public key: /users/ardita/.ssh/config.pub) | |
| 2015:02:27 11:35:09 6042 MainThread saga.ContextSSH : [INFO ] init SSH context for key at '/users/ardita/.ssh/id_rsa' done | |
| 2015:02:27 11:35:09 6042 MainThread saga.DefaultSession : [DEBUG ] default context [saga.adaptor.ssh ] : {'LifeTime' : '-1', 'Type' : 'ssh', 'UserCert' : '/users/ardita/.ssh/id_rsa.pub', 'UserKey' : '/users/ardita/.ssh/id_rsa'} | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] using database url mongodb://extasy:extasyproject@extasy-db.epcc.ed.ac.uk/radicalpilot | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] using database path radicalpilot | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for nersc.hopper | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for futuregrid.sierra | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for futuregrid.alamo | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for futuregrid.hotel | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for futuregrid.india | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for lrz.supermuc | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for epsrc.archer | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for rice.biou | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for rice.davinci | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for local.localhost | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for radical.tutorial | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for das4.fs2 | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for ncar.yellowstone | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for iu.bigred2 | |
| 2015:02:27 11:35:09 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for iu.quarry | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.stampede | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.trestles | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.gordon | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.blacklight | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.lonestar | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [INFO ] New Session created{'uid': '54f0566ef8cdba179a61a561', 'created': datetime.datetime(2015, 2, 27, 11, 35, 10, 27612), 'database_auth': 'extasy:extasyproject', 'database_name': 'radicalpilot', 'database_url': 'mongodb://extasy:extasyproject@extasy-db.epcc.ed.ac.uk/radicalpilot', 'last_reconnect': None}. | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [DEBUG ] Worker thread (ID: Thread-1[140133508577024]) for PilotManager 54f0566ef8cdba179a61a562 started. | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [WARNING ] using alias 'xsede.stampede' for deprecated resource key 'stampede.tacc.utexas.edu' | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [DEBUG ] saga.utils.PTYShell ('sftp://stampede.tacc.utexas.edu/') | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7f7365385410> | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [DEBUG ] open master pty for [ssh] [ardi@stampede.tacc.utexas.edu] ardi: /usr/bin/env TERM=vt100 "/usr/bin/ssh" -t -o IdentityFile=/users/ardita/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_ardita_%h_%p.ardi.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ardi@stampede.tacc.utexas.edu' | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365afc890> | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/users/ardita/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_ardita_%h_%p.ardi.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ardi@stampede.tacc.utexas.edu | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:10 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for PilotManager 54f0566ef8cdba179a61a562. | |
| 2015:02:27 11:35:11 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2015:02:27 11:35:11 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 28] ( printf 'HELLO_%d_SAGA\n' 1\n) | |
| 2015:02:27 11:35:12 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2015:02:27 11:35:12 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 28] ( printf 'HELLO_%d_SAGA\n' 2\n) | |
| 2015:02:27 11:35:13 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2015:02:27 11:35:13 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 28] ( printf 'HELLO_%d_SAGA\n' 3\n) | |
| 2015:02:27 11:35:14 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2015:02:27 11:35:14 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 28] ( printf 'HELLO_%d_SAGA\n' 4\n) | |
| 2015:02:27 11:35:14 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 2396] (Last login: Thu Feb 26 08:09:2 ... __________________________\n\n) | |
| 2015:02:27 11:35:14 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Thu Feb 26 08:09:22 2015 from poirot.pharm.nottingham.ac.uk | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2015:02:27 11:35:14 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_4_SAGA: (5) (Last login: Thu Feb 26 08:09:22 2015 from poirot.pharm.nottingham.ac.uk | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 244] (----------------------- Project balances for user ardi ------------------------\n| Name Avail SUs Expires | Name Avail SUs Expires |\n| TG-MCB090174 138702 2015-09-30 | TG-TRA140016 -81080 2015-05-06 | \n) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 28] ( printf 'HELLO_%d_SAGA\n' 4\n) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 405] (-------------------------- Disk quotas for user ardi --------------------------\n| Disk Usage (GB) Limit %Used File Usage Limit %Used |\n| /home1 0.1 5.0 2.36 4967 150000 3.31 |\n| /work 9.3 1024.0 0.91 619831 3000000 20.66 |\n-------------------------------------------------------------------------------\n) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 212] (\nTip 87 (See "module help tacc_tips" for features or how to disable)\n\n C-shell users: did you know that C-shell sources your ~/.cshrc on EVERY kind of shell: login, interactive, non-interactive shells?\n\n) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 69] (login3.stampede(1)$ $$HELLO_1_SAGA\n$$HELLO_2_SAGA\n$$HELLO_3_SAGA\n$) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) ( | |
| See "man slurm" or the Stampede user guide for more detailed information. | |
| --> To see all the software that is available across all compilers and | |
| mpi stacks, issue: "module spider" | |
| --> To see which software packages are available with your currently loaded | |
| compiler and mpi stack, issue: "module avail" | |
| --> Stampede has three parallel file systems: $HOME (permanent, | |
| quota'd, backed-up) $WORK (permanent, quota'd, not backed-up) and | |
| $SCRATCH (high-speed purged storage). The "cdw" and "cds" aliases | |
| are provided as a convenience to change to your $WORK and $SCRATCH | |
| directories, respectively. | |
| ______________________________________________________________________________ | |
| ----------------------- Project balances for user ardi ------------------------ | |
| | Name Avail SUs Expires | Name Avail SUs Expires | | |
| | TG-MCB090174 138702 2015-09-30 | TG-TRA140016 -81080 2015-05-06 | | |
| -------------------------- Disk quotas for user ardi -------------------------- | |
| | Disk Usage (GB) Limit %Used File Usage Limit %Used | | |
| | /home1 0.1 5.0 2.36 4967 150000 3.31 | | |
| | /work 9.3 1024.0 0.91 619831 3000000 20.66 | | |
| ------------------------------------------------------------------------------- | |
| Tip 87 (See "module help tacc_tips" for features or how to disable) | |
| C-shell users: did you know that C-shell sources your ~/.cshrc on EVERY kind of shell: login, interactive, non-interactive shells? | |
| login3.stampede(1)$ $$HELLO_1_SAGA | |
| $$HELLO_2_SAGA | |
| $$HELLO_3_SAGA) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ( | |
| $) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_4_SAGA: (5) ( | |
| $) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 31] ($HELLO_4_SAGA\n$HELLO_4_SAGA\n$) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) ($HELLO_4_SAGA | |
| $HELLO_4_SAGA) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ( | |
| $) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) ( | |
| $) | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365385810> | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/users/ardita/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_ardita_%h_%p.ardi.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ardi@stampede.tacc.utexas.edu | |
| 2015:02:27 11:35:15 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:16 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2015:02:27 11:35:16 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 28] ( printf 'HELLO_%d_SAGA\n' 1\n) | |
| 2015:02:27 11:35:17 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2015:02:27 11:35:17 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 28] ( printf 'HELLO_%d_SAGA\n' 2\n) | |
| 2015:02:27 11:35:18 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 2396] (Last login: Thu Feb 26 08:00:3 ... __________________________\n\n) | |
| 2015:02:27 11:35:18 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Thu Feb 26 08:00:35 2015 from poirot.pharm.nottingham.ac.uk | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2015:02:27 11:35:18 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_2_SAGA: (5) (Last login: Thu Feb 26 08:00:35 2015 from poirot.pharm.nottingham.ac.uk | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 244] (----------------------- Project balances for user ardi ------------------------\n| Name Avail SUs Expires | Name Avail SUs Expires |\n| TG-MCB090174 138702 2015-09-30 | TG-TRA140016 -81080 2015-05-06 | \n) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 405] (-------------------------- Disk quotas for user ardi --------------------------\n| Disk Usage (GB) Limit %Used File Usage Limit %Used |\n| /home1 0.1 5.0 2.36 4967 150000 3.31 |\n| /work 9.3 1024.0 0.91 619831 3000000 20.66 |\n-------------------------------------------------------------------------------\n) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 128] (\nTip 124 (See "module help tacc_tips" for features or how to disable)\n\n Use Ctrl+E to go the end of the command line.\n\n) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 53] (login2.stampede(1)$ $$HELLO_1_SAGA\n$$HELLO_2_SAGA\n$) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) ( | |
| See "man slurm" or the Stampede user guide for more detailed information. | |
| --> To see all the software that is available across all compilers and | |
| mpi stacks, issue: "module spider" | |
| --> To see which software packages are available with your currently loaded | |
| compiler and mpi stack, issue: "module avail" | |
| --> Stampede has three parallel file systems: $HOME (permanent, | |
| quota'd, backed-up) $WORK (permanent, quota'd, not backed-up) and | |
| $SCRATCH (high-speed purged storage). The "cdw" and "cds" aliases | |
| are provided as a convenience to change to your $WORK and $SCRATCH | |
| directories, respectively. | |
| ______________________________________________________________________________ | |
| ----------------------- Project balances for user ardi ------------------------ | |
| | Name Avail SUs Expires | Name Avail SUs Expires | | |
| | TG-MCB090174 138702 2015-09-30 | TG-TRA140016 -81080 2015-05-06 | | |
| -------------------------- Disk quotas for user ardi -------------------------- | |
| | Disk Usage (GB) Limit %Used File Usage Limit %Used | | |
| | /home1 0.1 5.0 2.36 4967 150000 3.31 | | |
| | /work 9.3 1024.0 0.91 619831 3000000 20.66 | | |
| ------------------------------------------------------------------------------- | |
| Tip 124 (See "module help tacc_tips" for features or how to disable) | |
| Use Ctrl+E to go the end of the command line. | |
| login2.stampede(1)$ $$HELLO_1_SAGA | |
| $$HELLO_2_SAGA) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ( | |
| $) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) ( | |
| $) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] running command shell: exec /bin/sh -i | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 1] ($) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] flush: [ 6] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] got new shell prompt | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] flush: [ 6] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] flush: [ 6] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] run_sync: echo "WORKDIR: $WORK" | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 22] (echo "WORKDIR: $WORK"\n) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 37] (WORKDIR: /work/02998/ardi\nPROMPT-0->) | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] Determined remote working directory for sftp://stampede.tacc.utexas.edu/: '/work/02998/ardi' | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] PTYShell del <saga.utils.pty_shell.PTYShell object at 0x7f7365385410> | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [INFO ] Launching ComputePilot {u'state': u'PendingLaunch', u'commands': [], u'description': {u'project': u'TG-MCB090174', u'resource': u'stampede.tacc.utexas.edu', u'queue': u'normal', u'sandbox': None, u'cleanup': None, u'pilot_agent_priv': None, u'access_schema': None, u'memory': None, u'cores': 16, u'runtime': 60}, u'sagajobid': None, u'started': None, u'cores_per_node': None, u'output_transfer_started': None, u'finished': None, u'submitted': datetime.datetime(2015, 2, 27, 11, 35, 19, 931000), u'output_transfer_finished': None, u'sandbox': u'sftp://stampede.tacc.utexas.edu/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/', u'pilotmanager': u'54f0566ef8cdba179a61a562', u'unitmanager': None, u'heartbeat': None, u'statehistory': [{u'timestamp': datetime.datetime(2015, 2, 27, 11, 35, 19, 930000), u'state': u'PendingLaunch'}], u'input_transfer_started': None, u'_id': ObjectId('54f0566ef8cdba179a61a563'), u'input_transfer_finished': None, u'nodes': None, u'log': []} | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [WARNING ] using alias 'xsede.stampede' for deprecated resource key 'stampede.tacc.utexas.edu' | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [INFO ] Using pilot agent /users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [INFO ] Using bootstrapper /users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh | |
| 2015:02:27 11:35:19 radical.pilot.MainProcess: [DEBUG ] Copying bootstrapper 'file://localhost//users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh' to agent sandbox (sftp://stampede.tacc.utexas.edu/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563//default_bootstrapper.sh). | |
| 2015:02:27 11:35:19 6042 PilotLauncherWorker-1 saga.ShellFile : [INFO ] init_instance file://localhost//users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh | |
| 2015:02:27 11:35:19 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7f736403e090> | |
| 2015:02:27 11:35:19 6042 PilotLauncherWorker-1 saga.ShellFile : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] open master pty for [sh] [localhost] ardita: /usr/bin/env TERM=vt100 "/bin/tcsh" -i' | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365f16950> | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/tcsh -i | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 7] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [DEBUG ] PTYProcess del <saga.utils.pty_process.PTYProcess object at 0x7f7365385810> | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [INFO ] Starting InputFileTransferWorker | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [INFO ] Starting InputFileTransferWorker | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [DEBUG ] Worker thread (ID: Thread-3[140133456127744]) for UnitManager 54f05678f8cdba179a61a564 started. | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [INFO ] Loaded scheduler: DirectSubmissionScheduler. | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///users/ardita/coam-on-stampede_27Feb/penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///penta.crd', 'priority': 0}' | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///users/ardita/coam-on-stampede_27Feb/mdshort.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///mdshort.in', 'priority': 0}' | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///users/ardita/coam-on-stampede_27Feb/min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///min.in', 'priority': 0}' | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///users/ardita/coam-on-stampede_27Feb/penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///penta.top', 'priority': 0}' | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Preprocessor/Amber/../../Analyzer/CoCo/postexec.py', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///postexec.py', 'priority': 0}' | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///users/ardita/coam-on-stampede_27Feb/penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter0/penta.crd', 'priority': 0}' | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [INFO ] Operating from staging | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for UnitManager 54f05678f8cdba179a61a564. | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for UnitManager 54f05678f8cdba179a61a564. | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for UnitManager 54f05678f8cdba179a61a564. | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for UnitManager 54f05678f8cdba179a61a564. | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 3] ( \n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 45] (Welcome to poirot.pharm.nottingham.ac.uk\n \n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 46] (Operating System: CentOS release 6.6 (Final)\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 94] (CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz\n 8 3601 MHz x86_64 Processors\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 63] (Main memory size: 15874 Mbytes\nSwap memory size: 8007 Mbytes\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 18] (Removable media:\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 29] ( /dev/sr0: CDDVDW SH-222BB\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 3] ( \n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 244] (Disk quotas for user ardita (uid 1285): \n Filesystem blocks quota limit grace files quota limit grace\nlund.pharm.nottingham.ac.uk:/users/\n 394G 400G 1809G 115k 0 0 \n \n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 31] (Currently Loaded Modulefiles:\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 73] ( 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 3] ( \n) | |
| 2015:02:27 11:35:20 radical.pilot.MainProcess: [INFO ] ComputePilot '54f0566ef8cdba179a61a563' state changed from 'PendingLaunch' to 'Launching'. | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 41] (Condor queue: 0 jobs currently in queue\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 131] ( \nFor information about this machine and software available on it go to:\n http://holmes.cancres.nottingham.ac.uk/facilities/\n \n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 7] [ 82] (ardita@poirot 101% export PS1='$' ; set prompt='$'\nexport: Command not found.\n$) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f736413b490> | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/tcsh -i | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 12] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 3] ( \n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 45] (Welcome to poirot.pharm.nottingham.ac.uk\n \n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 46] (Operating System: CentOS release 6.6 (Final)\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 94] (CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz\n 8 3601 MHz x86_64 Processors\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 63] (Main memory size: 15874 Mbytes\nSwap memory size: 8007 Mbytes\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 18] (Removable media:\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 29] ( /dev/sr0: CDDVDW SH-222BB\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 3] ( \n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 244] (Disk quotas for user ardita (uid 1285): \n Filesystem blocks quota limit grace files quota limit grace\nlund.pharm.nottingham.ac.uk:/users/\n 394G 400G 1809G 115k 0 0 \n \n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 31] (Currently Loaded Modulefiles:\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 73] ( 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 3] ( \n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 41] (Condor queue: 0 jobs currently in queue\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 131] ( \nFor information about this machine and software available on it go to:\n http://holmes.cancres.nottingham.ac.uk/facilities/\n \n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 53] (ardita@poirot 101% export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 29] (export: Command not found.\n$) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 12] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 48] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 8] (sh-4.1$ ) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 12] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 12] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got new shell prompt | |
| 2015:02:27 11:35:20 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 12] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:21 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: cd /users/ardita/coam-on-stampede_27Feb | |
| 2015:02:27 11:35:21 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 12] [ 40] (cd /users/ardita/coam-on-stampede_27Feb\n) | |
| 2015:02:27 11:35:21 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:21 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 12] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:21 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 12] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:21 6042 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7f736413b610> | |
| 2015:02:27 11:35:21 6042 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2015:02:27 11:35:21 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365ed7e10> | |
| 2015:02:27 11:35:21 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/users/ardita/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_ardita_%h_%p.ardi.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ardi@stampede.tacc.utexas.edu | |
| 2015:02:27 11:35:21 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:21 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: true; test -r '//users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh' | |
| 2015:02:27 11:35:21 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 12] [ 123] (true; test -r '//users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh'\n) | |
| 2015:02:27 11:35:21 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:21 6042 PilotLauncherWorker-1 saga.ShellFile : [INFO ] file initialized (0)() | |
| 2015:02:27 11:35:22 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2015:02:27 11:35:22 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 28] ( printf 'HELLO_%d_SAGA\n' 1\n) | |
| 2015:02:27 11:35:23 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2015:02:27 11:35:23 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 28] ( printf 'HELLO_%d_SAGA\n' 2\n) | |
| 2015:02:27 11:35:23 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 2396] (Last login: Thu Feb 26 08:09:3 ... __________________________\n\n) | |
| 2015:02:27 11:35:23 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Thu Feb 26 08:09:32 2015 from poirot.pharm.nottingham.ac.uk | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2015:02:27 11:35:23 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_2_SAGA: (5) (Last login: Thu Feb 26 08:09:32 2015 from poirot.pharm.nottingham.ac.uk | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 244] (----------------------- Project balances for user ardi ------------------------\n| Name Avail SUs Expires | Name Avail SUs Expires |\n| TG-MCB090174 138702 2015-09-30 | TG-TRA140016 -81080 2015-05-06 | \n) | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 405] (-------------------------- Disk quotas for user ardi --------------------------\n| Disk Usage (GB) Limit %Used File Usage Limit %Used |\n| /home1 0.1 5.0 2.36 4967 150000 3.31 |\n| /work 9.3 1024.0 0.91 619831 3000000 20.66 |\n-------------------------------------------------------------------------------\n) | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 212] (\nTip 136 (See "module help tacc_tips" for features or how to disable)\n\n To restrict the memory that a JVM can use on a Stampede login node, try the following: "export JAVA_TOOL_OPTIONS="-Xms2G -Xmx2G".\n\n) | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 21] (login1.stampede(1)$ $) | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ( | |
| See "man slurm" or the Stampede user guide for more detailed information. | |
| --> To see all the software that is available across all compilers and | |
| mpi stacks, issue: "module spider" | |
| --> To see which software packages are available with your currently loaded | |
| compiler and mpi stack, issue: "module avail" | |
| --> Stampede has three parallel file systems: $HOME (permanent, | |
| quota'd, backed-up) $WORK (permanent, quota'd, not backed-up) and | |
| $SCRATCH (high-speed purged storage). The "cdw" and "cds" aliases | |
| are provided as a convenience to change to your $WORK and $SCRATCH | |
| directories, respectively. | |
| ______________________________________________________________________________ | |
| ----------------------- Project balances for user ardi ------------------------ | |
| | Name Avail SUs Expires | Name Avail SUs Expires | | |
| | TG-MCB090174 138702 2015-09-30 | TG-TRA140016 -81080 2015-05-06 | | |
| -------------------------- Disk quotas for user ardi -------------------------- | |
| | Disk Usage (GB) Limit %Used File Usage Limit %Used | | |
| | /home1 0.1 5.0 2.36 4967 150000 3.31 | | |
| | /work 9.3 1024.0 0.91 619831 3000000 20.66 | | |
| ------------------------------------------------------------------------------- | |
| Tip 136 (See "module help tacc_tips" for features or how to disable) | |
| To restrict the memory that a JVM can use on a Stampede login node, try the following: "export JAVA_TOOL_OPTIONS="-Xms2G -Xmx2G". | |
| login1.stampede(1)$ $) | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_2_SAGA: (5) ( | |
| See "man slurm" or the Stampede user guide for more detailed information. | |
| --> To see all the software that is available across all compilers and | |
| mpi stacks, issue: "module spider" | |
| --> To see which software packages are available with your currently loaded | |
| compiler and mpi stack, issue: "module avail" | |
| --> Stampede has three parallel file systems: $HOME (permanent, | |
| quota'd, backed-up) $WORK (permanent, quota'd, not backed-up) and | |
| $SCRATCH (high-speed purged storage). The "cdw" and "cds" aliases | |
| are provided as a convenience to change to your $WORK and $SCRATCH | |
| directories, respectively. | |
| ______________________________________________________________________________ | |
| ----------------------- Project balances for user ardi ------------------------ | |
| | Name Avail SUs Expires | Name Avail SUs Expires | | |
| | TG-MCB090174 138702 2015-09-30 | TG-TRA140016 -81080 2015-05-06 | | |
| -------------------------- Disk quotas for user ardi -------------------------- | |
| | Disk Usage (GB) Limit %Used File Usage Limit %Used | | |
| | /home1 0.1 5.0 2.36 4967 150000 3.31 | | |
| | /work 9.3 1024.0 0.91 619831 3000000 20.66 | | |
| ------------------------------------------------------------------------------- | |
| Tip 136 (See "module help tacc_tips" for features or how to disable) | |
| To restrict the memory that a JVM can use on a Stampede login node, try the following: "export JAVA_TOOL_OPTIONS="-Xms2G -Xmx2G". | |
| login1.stampede(1)$ $) | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 32] ($HELLO_1_SAGA\n$$HELLO_2_SAGA\n$) | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) ($HELLO_1_SAGA | |
| $$HELLO_2_SAGA) | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ( | |
| $) | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) ( | |
| $) | |
| 2015:02:27 11:35:24 6042 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 1] ($) | |
| 2015:02:27 11:35:24 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:25 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2015:02:27 11:35:25 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:25 6042 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2015:02:27 11:35:25 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:25 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7f736413b410> | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365f07790> | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/tcsh -i | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 14] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:25 6042 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && cd /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && mkdir -p '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' ; cd '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' | |
| 2015:02:27 11:35:25 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 370] (mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && cd /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && mkdir -p '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' ; cd '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area'\n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 3] ( \n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 45] (Welcome to poirot.pharm.nottingham.ac.uk\n \n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 46] (Operating System: CentOS release 6.6 (Final)\n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 94] (CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz\n 8 3601 MHz x86_64 Processors\n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 63] (Main memory size: 15874 Mbytes\nSwap memory size: 8007 Mbytes\n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 47] (Removable media:\n /dev/sr0: CDDVDW SH-222BB\n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 3] ( \n) | |
| 2015:02:27 11:35:25 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 244] (Disk quotas for user ardita (uid 1285): \n Filesystem blocks quota limit grace files quota limit grace\nlund.pharm.nottingham.ac.uk:/users/\n 394G 400G 1809G 115k 0 0 \n \n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 31] (Currently Loaded Modulefiles:\n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 76] ( 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1\n \n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 41] (Condor queue: 0 jobs currently in queue\n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 131] ( \nFor information about this machine and software available on it go to:\n http://holmes.cancres.nottingham.ac.uk/facilities/\n \n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 82] (ardita@poirot 101% export PS1='$' ; set prompt='$'\nexport: Command not found.\n$) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 14] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 48] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 8] (sh-4.1$ ) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 14] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 14] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got new shell prompt | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 14] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: cd /users/ardita/coam-on-stampede_27Feb | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 14] [ 40] (cd /users/ardita/coam-on-stampede_27Feb\n) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 14] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:25 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 14] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:26 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7f736413bbd0> | |
| 2015:02:27 11:35:26 6042 PilotLauncherWorker-1 saga.ShellFile : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2015:02:27 11:35:26 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365f077d0> | |
| 2015:02:27 11:35:26 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/users/ardita/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_ardita_%h_%p.ardi.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ardi@stampede.tacc.utexas.edu | |
| 2015:02:27 11:35:26 radical.pilot.MainProcess: [DEBUG ] write: [ 15] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:27 radical.pilot.MainProcess: [DEBUG ] write: [ 15] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2015:02:27 11:35:27 radical.pilot.MainProcess: [DEBUG ] write: [ 15] [ 28] ( printf 'HELLO_%d_SAGA\n' 1\n) | |
| 2015:02:27 11:35:28 radical.pilot.MainProcess: [DEBUG ] write: [ 15] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2015:02:27 11:35:28 radical.pilot.MainProcess: [DEBUG ] write: [ 15] [ 28] ( printf 'HELLO_%d_SAGA\n' 2\n) | |
| 2015:02:27 11:35:28 radical.pilot.MainProcess: [DEBUG ] read : [ 15] [ 2396] (Last login: Thu Feb 26 08:09:1 ... __________________________\n\n) | |
| 2015:02:27 11:35:28 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Thu Feb 26 08:09:15 2015 from poirot.pharm.nottingham.ac.uk | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2015:02:27 11:35:28 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_2_SAGA: (5) (Last login: Thu Feb 26 08:09:15 2015 from poirot.pharm.nottingham.ac.uk | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] read : [ 15] [ 244] (----------------------- Project balances for user ardi ------------------------\n| Name Avail SUs Expires | Name Avail SUs Expires |\n| TG-MCB090174 138702 2015-09-30 | TG-TRA140016 -81080 2015-05-06 | \n) | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] read : [ 15] [ 405] (-------------------------- Disk quotas for user ardi --------------------------\n| Disk Usage (GB) Limit %Used File Usage Limit %Used |\n| /home1 0.1 5.0 2.36 4967 150000 3.31 |\n| /work 9.3 1024.0 0.91 619833 3000000 20.66 |\n-------------------------------------------------------------------------------\n) | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] read : [ 15] [ 252] (\nTip 4 (See "module help tacc_tips" for features or how to disable)\n\n Use "!!" to repeat the most recent command. Use "!mpi" to repeat the most recent command that started with "mpi" and "!?mpi?" for the most recent one that contained "mpi".\n\n) | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] read : [ 15] [ 53] (login4.stampede(1)$ $$HELLO_1_SAGA\n$$HELLO_2_SAGA\n$) | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) ( | |
| See "man slurm" or the Stampede user guide for more detailed information. | |
| --> To see all the software that is available across all compilers and | |
| mpi stacks, issue: "module spider" | |
| --> To see which software packages are available with your currently loaded | |
| compiler and mpi stack, issue: "module avail" | |
| --> Stampede has three parallel file systems: $HOME (permanent, | |
| quota'd, backed-up) $WORK (permanent, quota'd, not backed-up) and | |
| $SCRATCH (high-speed purged storage). The "cdw" and "cds" aliases | |
| are provided as a convenience to change to your $WORK and $SCRATCH | |
| directories, respectively. | |
| ______________________________________________________________________________ | |
| ----------------------- Project balances for user ardi ------------------------ | |
| | Name Avail SUs Expires | Name Avail SUs Expires | | |
| | TG-MCB090174 138702 2015-09-30 | TG-TRA140016 -81080 2015-05-06 | | |
| -------------------------- Disk quotas for user ardi -------------------------- | |
| | Disk Usage (GB) Limit %Used File Usage Limit %Used | | |
| | /home1 0.1 5.0 2.36 4967 150000 3.31 | | |
| | /work 9.3 1024.0 0.91 619833 3000000 20.66 | | |
| ------------------------------------------------------------------------------- | |
| Tip 4 (See "module help tacc_tips" for features or how to disable) | |
| Use "!!" to repeat the most recent command. Use "!mpi" to repeat the most recent command that started with "mpi" and "!?mpi?" for the most recent one that contained "mpi". | |
| login4.stampede(1)$ $$HELLO_1_SAGA | |
| $$HELLO_2_SAGA) | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ( | |
| $) | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) ( | |
| $) | |
| 2015:02:27 11:35:29 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] write: [ 15] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] read : [ 15] [ 1] ($) | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] flush: [ 15] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] write: [ 15] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] read : [ 15] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:29 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got new shell prompt | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] flush: [ 15] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] flush: [ 15] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:29 6042 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)() | |
| 2015:02:27 11:35:29 6042 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7f736413bf10> | |
| 2015:02:27 11:35:29 6042 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2015:02:27 11:35:29 6042 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365e9e050> | |
| 2015:02:27 11:35:29 6042 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/tcsh -i | |
| 2015:02:27 11:35:29 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 16] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:29 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/ | |
| 2015:02:27 11:35:29 radical.pilot.MainProcess: [DEBUG ] write: [ 15] [ 80] (mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/\n) | |
| 2015:02:27 11:35:29 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 48] ( \nWelcome to poirot.pharm.nottingham.ac.uk\n \n) | |
| 2015:02:27 11:35:29 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 46] (Operating System: CentOS release 6.6 (Final)\n) | |
| 2015:02:27 11:35:29 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 94] (CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz\n 8 3601 MHz x86_64 Processors\n) | |
| 2015:02:27 11:35:29 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 63] (Main memory size: 15874 Mbytes\nSwap memory size: 8007 Mbytes\n) | |
| 2015:02:27 11:35:30 radical.pilot.MainProcess: [DEBUG ] read : [ 15] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:30 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 47] (Removable media:\n /dev/sr0: CDDVDW SH-222BB\n) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 3] ( \n) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 244] (Disk quotas for user ardita (uid 1285): \n Filesystem blocks quota limit grace files quota limit grace\nlund.pharm.nottingham.ac.uk:/users/\n 394G 400G 1809G 115k 0 0 \n \n) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 31] (Currently Loaded Modulefiles:\n) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 73] ( 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1\n) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 3] ( \n) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 41] (Condor queue: 0 jobs currently in queue\n) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 131] ( \nFor information about this machine and software available on it go to:\n http://holmes.cancres.nottingham.ac.uk/facilities/\n \n) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 82] (ardita@poirot 101% export PS1='$' ; set prompt='$'\nexport: Command not found.\n$) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 16] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:30 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f736413b9d0> | |
| 2015:02:27 11:35:30 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/sftp -o IdentityFile=/users/ardita/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_ardita_%h_%p.ardi.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ardi@stampede.tacc.utexas.edu | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 48] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:30 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 43] (Connecting to stampede.tacc.utexas.edu...\n) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 8] (sh-4.1$ ) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 16] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 16] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 16] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /users/ardita/coam-on-stampede_27Feb | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 16] [ 40] (cd /users/ardita/coam-on-stampede_27Feb\n) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:30 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 16] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:30 radical.pilot.MainProcess: [DEBUG ] flush: [ 15] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:33 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> ) | |
| 2015:02:27 11:35:33 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Connecting to stampede.tacc.utexas.edu... | |
| sftp> ) | |
| 2015:02:27 11:35:33 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (Connecting to stampede.tacc.utexas.edu... | |
| sftp> ) | |
| 2015:02:27 11:35:33 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:33 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f736414f990> | |
| 2015:02:27 11:35:33 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/sftp -o IdentityFile=/users/ardita/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_ardita_%h_%p.ardi.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ardi@stampede.tacc.utexas.edu | |
| 2015:02:27 11:35:33 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 43] (Connecting to stampede.tacc.utexas.edu...\n) | |
| 2015:02:27 11:35:33 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:33 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 211] (mput "//users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh" "/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/default_bootstrapper.sh"\n) | |
| 2015:02:27 11:35:33 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 216] (mput "//users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pil ot/bootstrapper/default_bootstrapper.sh" "/work/02998/ardi/radical.pilot.sandbox /pilot-54f0566ef8cdba179a61a563/default_bootstrapper.sh"\n) | |
| 2015:02:27 11:35:33 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 215] (Uploading //users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh to /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/default_bootstrapper.sh\n) | |
| 2015:02:27 11:35:33 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (//users/ardita/ExTASY-tools/lib/python2.7/sit 0% 0 0.0KB/s --:-- ETA) | |
| 2015:02:27 11:35:34 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (//users/ardita/ExTASY-tools/lib/python2.7/sit 100% 14KB 14.3KB/s 00:01 \n) | |
| 2015:02:27 11:35:34 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> ) | |
| 2015:02:27 11:35:34 radical.pilot.MainProcess: [DEBUG ] copy done: ['mput', 'Uploading', '//users/ardita/ExTASY-tools/lib/python2.7/sit', 'sftp>'] | |
| 2015:02:27 11:35:34 radical.pilot.MainProcess: [DEBUG ] Copying agent 'file://localhost//users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py' to agent sandbox (sftp://stampede.tacc.utexas.edu/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/). | |
| 2015:02:27 11:35:34 6042 PilotLauncherWorker-1 saga.ShellFile : [INFO ] init_instance file://localhost//users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py | |
| 2015:02:27 11:35:34 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 12] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:34 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: true; test -r '//users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py' | |
| 2015:02:27 11:35:34 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 12] [ 125] (true; test -r '//users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py'\n) | |
| 2015:02:27 11:35:34 6042 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 12] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:34 6042 PilotLauncherWorker-1 saga.ShellFile : [INFO ] file initialized (0)() | |
| 2015:02:27 11:35:34 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:34 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:34 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:34 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 212] (mput "//users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py" "/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/radical-pilot-agent.py"\n) | |
| 2015:02:27 11:35:34 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 217] (mput "//users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pil ot/agent/radical-pilot-agent-multicore.py" "/work/02998/ardi/radical.pilot.sandb ox/pilot-54f0566ef8cdba179a61a563/radical-pilot-agent.py"\n) | |
| 2015:02:27 11:35:35 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 216] (Uploading //users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py to /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/radical-pilot-agent.py\n) | |
| 2015:02:27 11:35:35 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (//users/ardita/ExTASY-tools/lib/python2.7/sit 0% 0 0.0KB/s --:-- ETA) | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (//users/ardita/ExTASY-tools/lib/python2.7/sit 100% 104KB 103.8KB/s 00:01 ) | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 2] (\n) | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> ) | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [DEBUG ] copy done: ['mput', 'Uploading', '//users/ardita/ExTASY-tools/lib/python2.7/sit', 'sftp>'] | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [DEBUG ] saga.job.Service ('slurm+ssh://stampede.tacc.utexas.edu/') | |
| 2015:02:27 11:35:36 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] Opening shell of type: ssh://stampede.tacc.utexas.edu | |
| 2015:02:27 11:35:36 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7f736413ba10> | |
| 2015:02:27 11:35:36 6042 PilotLauncherWorker-1 saga.SLURMJobService : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 6] (sftp> ) | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Connecting to stampede.tacc.utexas.edu... | |
| sftp> ) | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (Connecting to stampede.tacc.utexas.edu... | |
| sftp> ) | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [DEBUG ] flush: [ 18] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365aa7e50> | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/users/ardita/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_ardita_%h_%p.ardi.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ardi@stampede.tacc.utexas.edu | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:36 radical.pilot.MainProcess: [DEBUG ] flush: [ 18] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:37 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 150] (mput "/users/ardita/coam-on-stampede_27Feb/penta.crd" "/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/penta.crd"\n) | |
| 2015:02:27 11:35:37 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 153] (mput "/users/ardita/coam-on-stampede_27Feb/penta.crd" "/work/02998/ardi/r adical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/penta.crd"\n) | |
| 2015:02:27 11:35:37 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 154] (Uploading /users/ardita/coam-on-stampede_27Feb/penta.crd to /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/penta.crd\n) | |
| 2015:02:27 11:35:37 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 79] (/users/ardita/coam-on-stampede_27Feb/penta.cr 0% 0 0.0KB/s --:-- ETA) | |
| 2015:02:27 11:35:37 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 81] (/users/ardita/coam-on-stampede_27Feb/penta.cr 100% 2165 2.1KB/s 00:00 \n) | |
| 2015:02:27 11:35:37 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 6] (sftp> ) | |
| 2015:02:27 11:35:37 radical.pilot.MainProcess: [DEBUG ] copy done: ['mput', 'Uploading', '/users/ardita/coam-on-stampede_27Feb/penta.cr', 'sftp>'] | |
| 2015:02:27 11:35:37 radical.pilot.MainProcess: [INFO ] Operating from staging | |
| 2015:02:27 11:35:37 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:37 6042 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && cd /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && mkdir -p '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' ; cd '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' | |
| 2015:02:27 11:35:37 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 370] (mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && cd /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && mkdir -p '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' ; cd '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area'\n) | |
| 2015:02:27 11:35:37 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2015:02:27 11:35:37 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 28] ( printf 'HELLO_%d_SAGA\n' 1\n) | |
| 2015:02:27 11:35:38 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:38 6042 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)() | |
| 2015:02:27 11:35:38 6042 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7f736414f210> | |
| 2015:02:27 11:35:38 6042 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2015:02:27 11:35:38 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2015:02:27 11:35:38 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 28] ( printf 'HELLO_%d_SAGA\n' 2\n) | |
| 2015:02:27 11:35:39 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 2396] (Last login: Fri Feb 27 05:35:2 ... __________________________\n\n) | |
| 2015:02:27 11:35:39 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Fri Feb 27 05:35:23 2015 from poirot.pharm.nottingham.ac.uk | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2015:02:27 11:35:39 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_2_SAGA: (5) (Last login: Fri Feb 27 05:35:23 2015 from poirot.pharm.nottingham.ac.uk | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2015:02:27 11:35:39 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 244] (----------------------- Project balances for user ardi ------------------------\n| Name Avail SUs Expires | Name Avail SUs Expires |\n| TG-MCB090174 138702 2015-09-30 | TG-TRA140016 -81080 2015-05-06 | \n) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 405] (-------------------------- Disk quotas for user ardi --------------------------\n| Disk Usage (GB) Limit %Used File Usage Limit %Used |\n| /home1 0.1 5.0 2.36 4967 150000 3.31 |\n| /work 9.3 1024.0 0.91 619836 3000000 20.66 |\n-------------------------------------------------------------------------------\n) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 230] (\nTip 60 (See "module help tacc_tips" for features or how to disable)\n\n To list all hidden files without matching the current or parent directory, you can execute "ls .[^.]*". This will match .a where as ".??*" will not.\n\n) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 53] (login1.stampede(1)$ $$HELLO_1_SAGA\n$$HELLO_2_SAGA\n$) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) ( | |
| See "man slurm" or the Stampede user guide for more detailed information. | |
| --> To see all the software that is available across all compilers and | |
| mpi stacks, issue: "module spider" | |
| --> To see which software packages are available with your currently loaded | |
| compiler and mpi stack, issue: "module avail" | |
| --> Stampede has three parallel file systems: $HOME (permanent, | |
| quota'd, backed-up) $WORK (permanent, quota'd, not backed-up) and | |
| $SCRATCH (high-speed purged storage). The "cdw" and "cds" aliases | |
| are provided as a convenience to change to your $WORK and $SCRATCH | |
| directories, respectively. | |
| ______________________________________________________________________________ | |
| ----------------------- Project balances for user ardi ------------------------ | |
| | Name Avail SUs Expires | Name Avail SUs Expires | | |
| | TG-MCB090174 138702 2015-09-30 | TG-TRA140016 -81080 2015-05-06 | | |
| -------------------------- Disk quotas for user ardi -------------------------- | |
| | Disk Usage (GB) Limit %Used File Usage Limit %Used | | |
| | /home1 0.1 5.0 2.36 4967 150000 3.31 | | |
| | /work 9.3 1024.0 0.91 619836 3000000 20.66 | | |
| ------------------------------------------------------------------------------- | |
| Tip 60 (See "module help tacc_tips" for features or how to disable) | |
| To list all hidden files without matching the current or parent directory, you can execute "ls .[^.]*". This will match .a where as ".??*" will not. | |
| login1.stampede(1)$ $$HELLO_1_SAGA | |
| $$HELLO_2_SAGA) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ( | |
| $) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) ( | |
| $) | |
| 2015:02:27 11:35:40 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365f5df10> | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/tcsh -i | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 20] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 1] ($) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 48] ( \nWelcome to poirot.pharm.nottingham.ac.uk\n \n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 46] (Operating System: CentOS release 6.6 (Final)\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 94] (CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz\n 8 3601 MHz x86_64 Processors\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 63] (Main memory size: 15874 Mbytes\nSwap memory size: 8007 Mbytes\n) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:40 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] got new shell prompt | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 18] (Removable media:\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 29] ( /dev/sr0: CDDVDW SH-222BB\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 3] ( \n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 244] (Disk quotas for user ardita (uid 1285): \n Filesystem blocks quota limit grace files quota limit grace\nlund.pharm.nottingham.ac.uk:/users/\n 394G 400G 1809G 115k 0 0 \n \n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 31] (Currently Loaded Modulefiles:\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 73] ( 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 3] ( \n) | |
| 2015:02:27 11:35:40 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] Verifying existence of remote SLURM tools. | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 41] (Condor queue: 0 jobs currently in queue\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 131] ( \nFor information about this machine and software available on it go to:\n http://holmes.cancres.nottingham.ac.uk/facilities/\n \n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 82] (ardita@poirot 101% export PS1='$' ; set prompt='$'\nexport: Command not found.\n$) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 20] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 48] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 8] (sh-4.1$ ) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 20] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:40 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: which squeue | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 13] (which squeue\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 20] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 20] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /users/ardita/coam-on-stampede_27Feb | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 20] [ 40] (cd /users/ardita/coam-on-stampede_27Feb\n) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 20] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:40 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 20] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 27] (/usr/bin/squeue\nPROMPT-0->) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:40 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: which sbatch | |
| 2015:02:27 11:35:40 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 13] (which sbatch\n) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 27] (/usr/bin/sbatch\nPROMPT-0->) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:41 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: which scancel | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 14] (which scancel\n) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 152] (mput "/users/ardita/coam-on-stampede_27Feb/mdshort.in" "/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/mdshort.in"\n) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 155] (mput "/users/ardita/coam-on-stampede_27Feb/mdshort.in" "/work/02998/ardi/ radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/mdshort.in"\n) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 28] (/usr/bin/scancel\nPROMPT-0->) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 156] (Uploading /users/ardita/coam-on-stampede_27Feb/mdshort.in to /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/mdshort.in\n) | |
| 2015:02:27 11:35:41 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: which scontrol | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 15] (which scontrol\n) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/users/ardita/coam-on-stampede_27Feb/mdshort. 0% 0 0.0KB/s --:-- ETA) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 29] (/usr/bin/scontrol\nPROMPT-0->) | |
| 2015:02:27 11:35:41 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] got cmd prompt (0)(/usr/bin/scontrol | |
| ) | |
| 2015:02:27 11:35:41 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] No username provided in URL slurm+ssh://stampede.tacc.utexas.edu/, so we are going to find it with whoami | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:41 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: whoami | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 7] (whoami\n) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/users/ardita/coam-on-stampede_27Feb/mdshort. 100% 216 0.2KB/s 00:00 \n) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 16] (ardi\nPROMPT-0->) | |
| 2015:02:27 11:35:41 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] Username detected as: ardi | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] Bootstrap command line: /bin/bash ['-l', 'default_bootstrapper.sh', "-n radicalpilot -s 54f0566ef8cdba179a61a561 -p 54f0566ef8cdba179a61a563 -t 60 -c 16 -v 0.23 -m extasy-db.epcc.ed.ac.uk:27017 -a extasy:extasyproject -i /opt/apps/python/epd/7.3.2/bin/python -e 'module purge' -e 'module load TACC' -e 'module load cluster' -e 'module load Linux' -e 'module load mvapich2' -e 'module load python/2.7.3-epd-7.3.2' -e 'module unload xalt' -e 'export TACC_DELETE_FILES=TRUE' -l SLURM -j SSH -k IBRUN -d 10 -b"] | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] Submitting SAGA job with description: {'Queue': 'normal', 'Executable': '/bin/bash', 'WorkingDirectory': '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/', 'Project': 'TG-MCB090174', 'WallTimeLimit': 60, 'Arguments': ['-l', 'default_bootstrapper.sh', "-n radicalpilot -s 54f0566ef8cdba179a61a561 -p 54f0566ef8cdba179a61a563 -t 60 -c 16 -v 0.23 -m extasy-db.epcc.ed.ac.uk:27017 -a extasy:extasyproject -i /opt/apps/python/epd/7.3.2/bin/python -e 'module purge' -e 'module load TACC' -e 'module load cluster' -e 'module load Linux' -e 'module load mvapich2' -e 'module load python/2.7.3-epd-7.3.2' -e 'module unload xalt' -e 'export TACC_DELETE_FILES=TRUE' -l SLURM -j SSH -k IBRUN -d 10 -b"], 'Error': 'AGENT.STDERR', 'Output': 'AGENT.STDOUT', 'TotalCPUCount': 16} | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> ) | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] copy done: ['mput', 'Uploading', '/users/ardita/coam-on-stampede_27Feb/mdshort.', 'sftp>'] | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [INFO ] Operating from staging | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:41 6042 PilotLauncherWorker-1 saga.SLURMJobService : [WARNING ] number_of_processes not specified in submitted SLURM job description -- defaulting to 1 per total_cpu_count! (16) | |
| 2015:02:27 11:35:41 6042 PilotLauncherWorker-1 saga.SLURMJobService : [INFO ] Creating working directory /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/ | |
| 2015:02:27 11:35:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && cd /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && mkdir -p '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' ; cd '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' | |
| 2015:02:27 11:35:42 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 370] (mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && cd /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && mkdir -p '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' ; cd '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area'\n) | |
| 2015:02:27 11:35:42 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/ | |
| 2015:02:27 11:35:42 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 80] (mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/\n) | |
| 2015:02:27 11:35:42 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:42 6042 PilotLauncherWorker-1 saga.SLURMJobService : [INFO ] SLURM script generated: | |
| #!/bin/sh | |
| #SBATCH -J "SAGAPythonSLURMJob" | |
| #SBATCH --ntasks=16 | |
| #SBATCH --cpus-per-task=1 | |
| #SBATCH -D /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/ | |
| #SBATCH -o AGENT.STDOUT | |
| #SBATCH -e AGENT.STDERR | |
| #SBATCH -t 01:00:00 | |
| #SBATCH -p normal | |
| #SBATCH -A TG-MCB090174 | |
| /bin/bash -l default_bootstrapper.sh -n radicalpilot -s 54f0566ef8cdba179a61a561 -p 54f0566ef8cdba179a61a563 -t 60 -c 16 -v 0.23 -m extasy-db.epcc.ed.ac.uk:27017 -a extasy:extasyproject -i /opt/apps/python/epd/7.3.2/bin/python -e 'module purge' -e 'module load TACC' -e 'module load cluster' -e 'module load Linux' -e 'module load mvapich2' -e 'module load python/2.7.3-epd-7.3.2' -e 'module unload xalt' -e 'export TACC_DELETE_FILES=TRUE' -l SLURM -j SSH -k IBRUN -d 10 -b | |
| 2015:02:27 11:35:42 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:42 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)() | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7f7364100250> | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365abd990> | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/tcsh -i | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 21] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 48] ( \nWelcome to poirot.pharm.nottingham.ac.uk\n \n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 46] (Operating System: CentOS release 6.6 (Final)\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 94] (CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz\n 8 3601 MHz x86_64 Processors\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 63] (Main memory size: 15874 Mbytes\nSwap memory size: 8007 Mbytes\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 18] (Removable media:\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 29] ( /dev/sr0: CDDVDW SH-222BB\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 3] ( \n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 244] (Disk quotas for user ardita (uid 1285): \n Filesystem blocks quota limit grace files quota limit grace\nlund.pharm.nottingham.ac.uk:/users/\n 394G 400G 1809G 115k 0 0 \n \n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 31] (Currently Loaded Modulefiles:\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 73] ( 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 3] ( \n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 41] (Condor queue: 0 jobs currently in queue\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 131] ( \nFor information about this machine and software available on it go to:\n http://holmes.cancres.nottingham.ac.uk/facilities/\n \n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 53] (ardita@poirot 101% export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 29] (export: Command not found.\n$) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2015:02:27 11:35:42 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7364100410> | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 21] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)2015:02:27 11:35:42 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/sftp -o IdentityFile=/users/ardita/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_ardita_%h_%p.ardi.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ardi@stampede.tacc.utexas.edu | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 48] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:42 radical.pilot.MainProcess: [DEBUG ] read : [ 22] [ 43] (Connecting to stampede.tacc.utexas.edu...\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 8] (sh-4.1$ ) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 21] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 21] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 21] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /users/ardita/coam-on-stampede_27Feb | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 21] [ 40] (cd /users/ardita/coam-on-stampede_27Feb\n) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:42 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 21] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:43 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 144] (mput "/users/ardita/coam-on-stampede_27Feb/min.in" "/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/min.in"\n) | |
| 2015:02:27 11:35:43 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 147] (mput "/users/ardita/coam-on-stampede_27Feb/min.in" "/work/02998/ardi/radi cal.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/min.in"\n) | |
| 2015:02:27 11:35:43 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 148] (Uploading /users/ardita/coam-on-stampede_27Feb/min.in to /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/min.in\n) | |
| 2015:02:27 11:35:43 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/users/ardita/coam-on-stampede_27Feb/min.in 0% 0 0.0KB/s --:-- ETA) | |
| 2015:02:27 11:35:43 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/users/ardita/coam-on-stampede_27Feb/min.in 100% 227 0.2KB/s 00:00 \n) | |
| 2015:02:27 11:35:43 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> ) | |
| 2015:02:27 11:35:43 radical.pilot.MainProcess: [DEBUG ] copy done: ['mput', 'Uploading', '/users/ardita/coam-on-stampede_27Feb/min.in', 'sftp>'] | |
| 2015:02:27 11:35:43 radical.pilot.MainProcess: [INFO ] Operating from staging | |
| 2015:02:27 11:35:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:44 6042 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && cd /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && mkdir -p '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' ; cd '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' | |
| 2015:02:27 11:35:44 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 370] (mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && cd /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && mkdir -p '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' ; cd '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area'\n) | |
| 2015:02:27 11:35:44 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:44 6042 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)() | |
| 2015:02:27 11:35:44 6042 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7f7364100c90> | |
| 2015:02:27 11:35:44 6042 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2015:02:27 11:35:45 radical.pilot.MainProcess: [DEBUG ] read : [ 22] [ 6] (sftp> ) | |
| 2015:02:27 11:35:45 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Connecting to stampede.tacc.utexas.edu... | |
| sftp> ) | |
| 2015:02:27 11:35:45 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (Connecting to stampede.tacc.utexas.edu... | |
| sftp> ) | |
| 2015:02:27 11:35:45 radical.pilot.MainProcess: [DEBUG ] flush: [ 22] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:45 6042 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365a480d0> | |
| 2015:02:27 11:35:45 6042 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/tcsh -i | |
| 2015:02:27 11:35:45 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 23] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:45 radical.pilot.MainProcess: [DEBUG ] flush: [ 22] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:45 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 3] ( \n) | |
| 2015:02:27 11:35:45 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 45] (Welcome to poirot.pharm.nottingham.ac.uk\n \n) | |
| 2015:02:27 11:35:45 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 46] (Operating System: CentOS release 6.6 (Final)\n) | |
| 2015:02:27 11:35:45 radical.pilot.MainProcess: [DEBUG ] write: [ 22] [ 49] (mput "/tmp/tmp_lxvm3e.slurm" "tmp_lxvm3e.slurm"\n) | |
| 2015:02:27 11:35:45 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 94] (CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz\n 8 3601 MHz x86_64 Processors\n) | |
| 2015:02:27 11:35:45 radical.pilot.MainProcess: [DEBUG ] read : [ 22] [ 50] (mput "/tmp/tmp_lxvm3e.slurm" "tmp_lxvm3e.slurm"\n) | |
| 2015:02:27 11:35:45 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 63] (Main memory size: 15874 Mbytes\nSwap memory size: 8007 Mbytes\n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 18] (Removable media:\n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 29] ( /dev/sr0: CDDVDW SH-222BB\n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 3] ( \n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 275] (Disk quotas for user ardita (uid 1285): \n Filesystem blocks quota limit grace files quota limit grace\nlund.pharm.nottingham.ac.uk:/users/\n 394G 400G 1809G 115k 0 0 \n \nCurrently Loaded Modulefiles:\n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 73] ( 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1\n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 3] ( \n) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] read : [ 22] [ 71] (Uploading /tmp/tmp_lxvm3e.slurm to /home1/02998/ardi/tmp_lxvm3e.slurm\n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 41] (Condor queue: 0 jobs currently in queue\n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 131] ( \nFor information about this machine and software available on it go to:\n http://holmes.cancres.nottingham.ac.uk/facilities/\n \n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 53] (ardita@poirot 101% export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 29] (export: Command not found.\n$) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 23] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 48] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 8] (sh-4.1$ ) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 23] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 23] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 23] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] read : [ 22] [ 79] (/tmp/tmp_lxvm3e.slurm 0% 0 0.0KB/s --:-- ETA) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /users/ardita/coam-on-stampede_27Feb | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 23] [ 40] (cd /users/ardita/coam-on-stampede_27Feb\n) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:46 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 23] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] read : [ 22] [ 81] (/tmp/tmp_lxvm3e.slurm 100% 769 0.8KB/s 00:00 \n) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] read : [ 22] [ 6] (sftp> ) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] copy done: ['mput', 'Uploading', '/tmp/tmp_lxvm3e.slurm', 'sftp>'] | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:46 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: cat 'tmp_lxvm3e.slurm' | sbatch && rm -vf 'tmp_lxvm3e.slurm' | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 61] (cat 'tmp_lxvm3e.slurm' | sbatch && rm -vf 'tmp_lxvm3e.slurm'\n) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 150] (mput "/users/ardita/coam-on-stampede_27Feb/penta.top" "/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/penta.top"\n) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 153] (mput "/users/ardita/coam-on-stampede_27Feb/penta.top" "/work/02998/ardi/r adical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/penta.top"\n) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 203] (-----------------------------------------------------------------\n Welcome to the Stampede Supercomputer \n-----------------------------------------------------------------\n\n) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 81] (--> Verifying valid submit host (login1)...OK\n--> Verifying valid jobname...OK\n) | |
| 2015:02:27 11:35:46 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 154] (Uploading /users/ardita/coam-on-stampede_27Feb/penta.top to /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/penta.top\n) | |
| 2015:02:27 11:35:47 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/users/ardita/coam-on-stampede_27Feb/penta.to 0% 0 0.0KB/s --:-- ETA) | |
| 2015:02:27 11:35:47 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/users/ardita/coam-on-stampede_27Feb/penta.to 100% 33KB 32.8KB/s 00:00 \n) | |
| 2015:02:27 11:35:47 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> ) | |
| 2015:02:27 11:35:47 radical.pilot.MainProcess: [DEBUG ] copy done: ['mput', 'Uploading', '/users/ardita/coam-on-stampede_27Feb/penta.to', 'sftp>'] | |
| 2015:02:27 11:35:47 radical.pilot.MainProcess: [INFO ] Operating from staging | |
| 2015:02:27 11:35:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && cd /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && mkdir -p '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' ; cd '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' | |
| 2015:02:27 11:35:48 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 370] (mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && cd /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && mkdir -p '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' ; cd '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area'\n) | |
| 2015:02:27 11:35:48 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)() | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7f7364100f50> | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365a60c50> | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/tcsh -i | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 24] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 3] ( \n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 45] (Welcome to poirot.pharm.nottingham.ac.uk\n \n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 46] (Operating System: CentOS release 6.6 (Final)\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 94] (CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz\n 8 3601 MHz x86_64 Processors\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 63] (Main memory size: 15874 Mbytes\nSwap memory size: 8007 Mbytes\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 18] (Removable media:\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 29] ( /dev/sr0: CDDVDW SH-222BB\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 3] ( \n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 244] (Disk quotas for user ardita (uid 1285): \n Filesystem blocks quota limit grace files quota limit grace\nlund.pharm.nottingham.ac.uk:/users/\n 394G 400G 1809G 115k 0 0 \n \n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 31] (Currently Loaded Modulefiles:\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 73] ( 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 3] ( \n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 41] (Condor queue: 0 jobs currently in queue\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 131] ( \nFor information about this machine and software available on it go to:\n http://holmes.cancres.nottingham.ac.uk/facilities/\n \n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 82] (ardita@poirot 101% export PS1='$' ; set prompt='$'\nexport: Command not found.\n$) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 24] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 48] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 8] (sh-4.1$ ) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 24] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 24] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 24] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /users/ardita/coam-on-stampede_27Feb | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 24] [ 40] (cd /users/ardita/coam-on-stampede_27Feb\n) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:48 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 24] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:48 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:49 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:49 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:49 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 216] (mput "/users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/postexec.py" "/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/postexec.py"\n) | |
| 2015:02:27 11:35:49 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 221] (mput "/users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/ense mblemd/extasy/bin/Analyzer/CoCo/postexec.py" "/work/02998/ardi/radical.pilot.san dbox/pilot-54f0566ef8cdba179a61a563/staging_area/postexec.py"\n) | |
| 2015:02:27 11:35:49 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 220] (Uploading /users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/postexec.py to /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/postexec.py\n) | |
| 2015:02:27 11:35:49 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/users/ardita/ExTASY-tools/lib/python2.7/site 0% 0 0.0KB/s --:-- ETA) | |
| 2015:02:27 11:35:49 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/users/ardita/ExTASY-tools/lib/python2.7/site 100% 521 0.5KB/s 00:00 \n) | |
| 2015:02:27 11:35:49 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> ) | |
| 2015:02:27 11:35:49 radical.pilot.MainProcess: [DEBUG ] copy done: ['mput', 'Uploading', '/users/ardita/ExTASY-tools/lib/python2.7/site', 'sftp>'] | |
| 2015:02:27 11:35:49 radical.pilot.MainProcess: [INFO ] Operating from staging | |
| 2015:02:27 11:35:49 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && cd /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && mkdir -p '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' ; cd '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' | |
| 2015:02:27 11:35:50 radical.pilot.MainProcess: [DEBUG ] write: [ 13] [ 370] (mkdir -p /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && cd /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area && mkdir -p '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area' ; cd '/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area'\n) | |
| 2015:02:27 11:35:50 radical.pilot.MainProcess: [DEBUG ] read : [ 13] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)() | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7f736414f5d0> | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7f7365a60c10> | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/tcsh -i | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 25] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 48] ( \nWelcome to poirot.pharm.nottingham.ac.uk\n \n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 46] (Operating System: CentOS release 6.6 (Final)\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 94] (CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz\n 8 3601 MHz x86_64 Processors\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 63] (Main memory size: 15874 Mbytes\nSwap memory size: 8007 Mbytes\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 18] (Removable media:\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 29] ( /dev/sr0: CDDVDW SH-222BB\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 3] ( \n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 244] (Disk quotas for user ardita (uid 1285): \n Filesystem blocks quota limit grace files quota limit grace\nlund.pharm.nottingham.ac.uk:/users/\n 394G 400G 1809G 115k 0 0 \n \n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 31] (Currently Loaded Modulefiles:\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 73] ( 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 3] ( \n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 41] (Condor queue: 0 jobs currently in queue\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 131] ( \nFor information about this machine and software available on it go to:\n http://holmes.cancres.nottingham.ac.uk/facilities/\n \n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 82] (ardita@poirot 101% export PS1='$' ; set prompt='$'\nexport: Command not found.\n$) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ( | |
| Welcome to poirot.pharm.nottingham.ac.uk | |
| Operating System: CentOS release 6.6 (Final) | |
| CPU: GenuineIntel Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz | |
| 8 3601 MHz x86_64 Processors | |
| Main memory size: 15874 Mbytes | |
| Swap memory size: 8007 Mbytes | |
| Removable media: | |
| /dev/sr0: CDDVDW SH-222BB | |
| Disk quotas for user ardita (uid 1285): | |
| Filesystem blocks quota limit grace files quota limit grace | |
| lund.pharm.nottingham.ac.uk:/users/ | |
| 394G 400G 1809G 115k 0 0 | |
| Currently Loaded Modulefiles: | |
| 1) sysinit 2) intel/14.0.3 3) python/2.7.8 4) geany/1.24.1 | |
| Condor queue: 0 jobs currently in queue | |
| For information about this machine and software available on it go to: | |
| http://holmes.cancres.nottingham.ac.uk/facilities/ | |
| ardita@poirot 101% export PS1='$' ; set prompt='$' | |
| export: Command not found. | |
| $) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 25] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 48] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 8] (sh-4.1$ ) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 25] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 25] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 25] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /users/ardita/coam-on-stampede_27Feb | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] write: [ 25] [ 40] (cd /users/ardita/coam-on-stampede_27Feb\n) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:50 6042 MainThread saga.ShellFile : [DEBUG ] flush: [ 25] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:50 radical.pilot.MainProcess: [DEBUG ] flush: [ 13] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 156] (mput "/users/ardita/coam-on-stampede_27Feb/penta.crd" "/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/iter0/penta.crd"\n) | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 161] (mput "/users/ardita/coam-on-stampede_27Feb/penta.crd" "/work/02998/ardi/r adical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/iter0/penta.crd "\n) | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 160] (Uploading /users/ardita/coam-on-stampede_27Feb/penta.crd to /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/iter0/penta.crd\n) | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 54] (Couldn't get handle: No such file or directory\nsftp> ) | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [ERROR ] DoesNotExist: file copy failed: mput "/users/ardita/coam-on-stampede_27Feb/penta.crd" "/work/02998/ardi/r adical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/iter0/penta.crd " | |
| Uploading /users/ardita/coam-on-stampede_27Feb/penta.crd to /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/iter0/penta.crd | |
| Couldn't get handle: No such file or directory | |
| sftp> | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [ERROR ] session 54f0566ef8cdba179a61a561 closing | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [ERROR ] session 54f0566ef8cdba179a61a561 closes pmgr 54f0566ef8cdba179a61a562 | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [ERROR ] pmgr 54f0566ef8cdba179a61a562 closing | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [ERROR ] pmgr 54f0566ef8cdba179a61a562 cancel worker Thread-1 | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [ERROR ] pworker Thread-1 stops launcher PilotLauncherWorker-1 | |
| 2015:02:27 11:35:51 radical.pilot.MainProcess: [ERROR ] launcher PilotLauncherWorker-1 stopping | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 38] (--> Enforcing max jobs per user...OK\n) | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 139] (--> Verifying availability of your home dir (/home1/02998/ardi)...OK\n--> Verifying availability of your work dir (/work/02998/ardi)...OK\n) | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 75] (--> Verifying availability of your scratch dir (/scratch/02998/ardi)...OK\n) | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 202] (--> Verifying valid ssh keys...OK\n--> Verifying access to desired queue (normal)...OK\n--> Verifying job request is within current queue limits...OK\n--> Checking available allocation (TG-MCB090174)...) | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 4] (OK\n) | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 29] (Submitted batch job 4914195\n) | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 38] (removed `tmp_lxvm3e.slurm'\nPROMPT-0->) | |
| 2015:02:27 11:35:52 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] staged/submit SLURM script (/tmp/tmp_lxvm3e.slurm) (tmp_lxvm3e.slurm) (0) | |
| 2015:02:27 11:35:52 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] started job [slurm+ssh://stampede.tacc.utexas.edu/]-[4914195] | |
| 2015:02:27 11:35:52 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] Batch system output: | |
| ----------------------------------------------------------------- | |
| Welcome to the Stampede Supercomputer | |
| ----------------------------------------------------------------- | |
| --> Verifying valid submit host (login1)...OK | |
| --> Verifying valid jobname...OK | |
| --> Enforcing max jobs per user...OK | |
| --> Verifying availability of your home dir (/home1/02998/ardi)...OK | |
| --> Verifying availability of your work dir (/work/02998/ardi)...OK | |
| --> Verifying availability of your scratch dir (/scratch/02998/ardi)...OK | |
| --> Verifying valid ssh keys...OK | |
| --> Verifying access to desired queue (normal)...OK | |
| --> Verifying job request is within current queue limits...OK | |
| --> Checking available allocation (TG-MCB090174)...OK | |
| Submitted batch job 4914195 | |
| removed `tmp_lxvm3e.slurm' | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:52 6042 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: scontrol show job 4914195 | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 26] (scontrol show job 4914195\n) | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 892] (JobId=4914195 Name=SAGAPythonS ... 8cdba179a61a563/\n\nPROMPT-0->) | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] SAGA job submitted with job id [slurm+ssh://stampede.tacc.utexas.edu/]-[4914195] | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [ERROR ] launcher PilotLauncherWorker-1 stopped | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [ERROR ] pworker Thread-1 stopped launcher PilotLauncherWorker-1 | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [ERROR ] pmgr 54f0566ef8cdba179a61a562 canceled worker Thread-1 | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] Reconnected to existing ComputePilot {'uid': '54f0566ef8cdba179a61a563', 'stdout': None, 'start_time': None, 'resource_detail': {'cores_per_node': None, 'nodes': None}, 'submission_time': datetime.datetime(2015, 2, 27, 11, 35, 19, 931000), 'logfile': None, 'resource': u'stampede.tacc.utexas.edu', 'log': [], 'sandbox': u'sftp://stampede.tacc.utexas.edu/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/', 'state': u'Launching', 'stop_time': None, 'stderr': None} | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [ERROR ] pmgr 54f0566ef8cdba179a61a562 cancels pilot 54f0566ef8cdba179a61a563 | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [INFO ] ComputePilot '54f0566ef8cdba179a61a563' state changed from 'Launching' to 'PendingActive'. | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [INFO ] Sent 'COMMAND_CANCEL_PILOT' command to pilots ['54f0566ef8cdba179a61a563']. | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [WARNING ] actively cancel pilot 54f0566ef8cdba179a61a563? state: PendingActive | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [INFO ] actively cancel pilot 54f0566ef8cdba179a61a563 ([slurm+ssh://stampede.tacc.utexas.edu/]-[4914195], slurm+ssh://stampede.tacc.utexas.edu/) | |
| 2015:02:27 11:35:52 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache) | |
| 2015:02:27 11:35:53 6042 MainThread saga.SLURMJobService : [DEBUG ] run_sync: scancel 4914195 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 16] (scancel 4914195\n) | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 10] (PROMPT-0->) | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [DEBUG ] Reconnected to existing ComputePilot {'uid': '54f0566ef8cdba179a61a563', 'stdout': None, 'start_time': None, 'resource_detail': {'cores_per_node': None, 'nodes': None}, 'submission_time': datetime.datetime(2015, 2, 27, 11, 35, 19, 931000), 'logfile': None, 'resource': u'stampede.tacc.utexas.edu', 'log': [<radical.pilot.logentry.Logentry object at 0x7f7364100490>, <radical.pilot.logentry.Logentry object at 0x7f73641001d0>, <radical.pilot.logentry.Logentry object at 0x7f73640d24d0>, <radical.pilot.logentry.Logentry object at 0x7f73640d2490>, <radical.pilot.logentry.Logentry object at 0x7f73640d2590>, <radical.pilot.logentry.Logentry object at 0x7f73640d25d0>], 'sandbox': u'sftp://stampede.tacc.utexas.edu/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/', 'state': 'Canceling', 'stop_time': None, 'stderr': None} | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] pmgr 54f0566ef8cdba179a61a562 wait for pilot 54f0566ef8cdba179a61a563 (Canceling) | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [DEBUG ] Reconnected to existing ComputePilot {'uid': '54f0566ef8cdba179a61a563', 'stdout': None, 'start_time': None, 'resource_detail': {'cores_per_node': None, 'nodes': None}, 'submission_time': datetime.datetime(2015, 2, 27, 11, 35, 19, 931000), 'logfile': None, 'resource': u'stampede.tacc.utexas.edu', 'log': [<radical.pilot.logentry.Logentry object at 0x7f73641001d0>, <radical.pilot.logentry.Logentry object at 0x7f73653851d0>, <radical.pilot.logentry.Logentry object at 0x7f73640d24d0>, <radical.pilot.logentry.Logentry object at 0x7f73640d2490>, <radical.pilot.logentry.Logentry object at 0x7f73640d2590>, <radical.pilot.logentry.Logentry object at 0x7f73640d25d0>], 'sandbox': u'sftp://stampede.tacc.utexas.edu/work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/', 'state': 'Canceling', 'stop_time': None, 'stderr': None} | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] pmgr 54f0566ef8cdba179a61a562 canceled pilot 54f0566ef8cdba179a61a563 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] pmgr 54f0566ef8cdba179a61a562 stops worker Thread-1 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] pworker Thread-1 stopping | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] pworker Thread-1 stops launcher PilotLauncherWorker-1 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] launcher PilotLauncherWorker-1 stopping | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] launcher PilotLauncherWorker-1 stopped | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] pworker Thread-1 stopped launcher PilotLauncherWorker-1 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] pworker Thread-1 stopped | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] pmgr 54f0566ef8cdba179a61a562 stopped worker Thread-1 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] pmgr 54f0566ef8cdba179a61a562 closed | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] session 54f0566ef8cdba179a61a561 closed pmgr None | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] session 54f0566ef8cdba179a61a561 closes umgr 54f05678f8cdba179a61a564 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stopping | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stops itransfer InputFileTransferWorker-1 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] itransfer InputFileTransferWorker-1 stopping | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] itransfer InputFileTransferWorker-1 stopped | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stopped itransfer InputFileTransferWorker-1 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stops itransfer InputFileTransferWorker-2 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] itransfer InputFileTransferWorker-2 stopping | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] itransfer InputFileTransferWorker-2 stopped | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stopped itransfer InputFileTransferWorker-2 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stops otransfer OutputFileTransferWorker-1 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] otransfer OutputFileTransferWorker-1 stopping | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] otransfer OutputFileTransferWorker-1 stopped | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stopped otransfer OutputFileTransferWorker-1 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stops otransfer OutputFileTransferWorker-2 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] otransfer OutputFileTransferWorker-2 stopping | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] otransfer OutputFileTransferWorker-2 stopped | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stopped otransfer OutputFileTransferWorker-2 | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stopped | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [INFO ] Closed UnitManager 54f05678f8cdba179a61a564. | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] session 54f0566ef8cdba179a61a561 closed umgr None | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [INFO ] Deleted session 54f0566ef8cdba179a61a561 from database. | |
| 2015:02:27 11:35:53 radical.pilot.MainProcess: [ERROR ] session None closed | |
| ExTASY version : 0.1.3-beta-5-g83107c8 | |
| Session UID: 54f0566ef8cdba179a61a561 | |
| Pilot UID : 54f0566ef8cdba179a61a563 | |
| Loading kernel configurations from /users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/mdkernels/configs/gromacs.json | |
| Loading kernel configurations from /users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/mdkernels/configs/amber.json | |
| Loading kernel configurations from /users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/mdkernels/configs/mmpbsa.json | |
| Loading kernel configurations from /users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/mdkernels/configs/test.json | |
| Loading kernel configurations from /users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/mdkernels/configs/coco.json | |
| Loading kernel configurations from /users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/mdkernels/configs/lsdmap.json | |
| Loading kernel configurations from /users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/mdkernels/configs/sleep.json | |
| Loading kernel configurations from /users/ardita/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/mdkernels/configs/namd.json | |
| Preprocessing stage .... | |
| [Callback]: ComputePilot '54f0566ef8cdba179a61a563' state changed to Launching. | |
| An error occurred: file copy failed: mput "/users/ardita/coam-on-stampede_27Feb/penta.crd" "/work/02998/ardi/r adical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/iter0/penta.crd " | |
| Uploading /users/ardita/coam-on-stampede_27Feb/penta.crd to /work/02998/ardi/radical.pilot.sandbox/pilot-54f0566ef8cdba179a61a563/staging_area/iter0/penta.crd | |
| Couldn't get handle: No such file or directory | |
| sftp> (/users/ardita/ExTASY-tools/lib/python2.7/site-packages/saga/utils/pty_shell.py +1010 (run_copy_to) : raise se.DoesNotExist._log (info['logger'], "file copy failed: %s" % str(out))) | |
| Closing session, exiting now ... | |
| [Callback]: ComputePilot '54f0566ef8cdba179a61a563' state changed to PendingActive. |
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