Skip to content

Instantly share code, notes, and snippets.

@aterrel

aterrel/gist:3981698

Created October 30, 2012 17:27
Show Gist options
  • Save aterrel/3981698 to your computer and use it in GitHub Desktop.
Save aterrel/3981698 to your computer and use it in GitHub Desktop.
Download ZIP
Raw
gistfile1.txt
| [10-30 13:26] aterrel@172-30-28-152:~/scratch (13.996 Mb)
$ hg clone http://petsc.cs.iit.edu/petsc/BuildSystem
destination directory: BuildSystem
requesting all changes
adding changesets
adding manifests
adding file changes
added 2876 changesets with 4053 changes to 208 files
updating to branch default
119 files updated, 0 files merged, 0 files removed, 0 files unresolved
________________________________________________________________________________
| [10-30 13:26] aterrel@172-30-28-152:~/scratch (13.996 Mb)
$ cd BuildSystem/
________________________________________________________________________________
| [10-30 13:26] aterrel@172-30-28-152:~/scratch/BuildSystem (.232 Mb)
$ ls
RDict.py getsplicers.py regression
__init__.py graph.py retrieval.py
args.py help.py script.py
build install.old setsplicers.py
builder.py.old logger.py sidldllpath.py
checkdlllibs.py make.py sourceControl.py
client-python maker.py sourceDatabase.py
config nargs.py urlMappingInstalled.py
configure.py patch.py urlMappingLocal.py
docs project.py
emacsclient.py pythonpath.py
________________________________________________________________________________
| [10-30 13:26] aterrel@172-30-28-152:~/scratch/BuildSystem (.232 Mb)
$ grep -ir petsc
grep: warning: recursive search of stdin
^C
________________________________________________________________________________
| [10-30 13:26] aterrel@172-30-28-152:~/scratch/BuildSystem (.232 Mb)
$ grep -ir petsc .
Binary file ./.hg/dirstate matches
./.hg/hgrc:default = http://petsc.cs.iit.edu/petsc/BuildSystem
Binary file ./.hg/store/00manifest.d matches
Binary file ./.hg/store/data/config/packages/_m_p_i.py.i matches
Binary file ./.hg/store/data/config/packages/_u_m_f_p_a_c_k.py.i matches
Binary file ./.hg/store/data/make.py.i matches
Binary file ./.hg/store/data/project.py.i matches
./.hg/store/fncache:data/config/packages/PETSc.py.i
Binary file ./.hg/store/undo matches
./.hg/undo.desc:http://petsc.cs.iit.edu/petsc/BuildSystem
./build/framework.py: maker = self.getMakeModule(proj.getRoot()).PetscMake(None, self.argDB)
./build/framework.py: maker = self.getMakeModule(p.getRoot()).PetscMake(None, self.argDB)
./build/framework.py: maker = self.getMakeModule(v.getRoot()).PetscMake(None, self.argDB)
./build/framework.py: maker = self.getMakeModule(l.getRoot()).PetscMake(None, self.argDB)
./build/framework.py: #self.executeShellCommand('scp '+tarball+' petsc@terra.mcs.anl.gov://mcs/ftp/pub/petsc/sidl/'+tarball)
./config/atomics.py: self.headerPrefix = 'PETSC'
./config/base.py: err += '\nPETSc Error: No output file produced'
./config/compilers.py: '''Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does'''
./config/compilers.py: if self.checkCompile('namespace petsc {int dummy;}'):
./config/compilers.py: mess = ' See http://www.mcs.anl.gov/petsc/documentation/faq.html#gfortran'
./config/compilers.py: # Flag not used by PETSc - do do not flag a runtime error
./config/framework.py:module requires another, it merely executes a require(). For instance, the PETSc
./config/framework.py: self._tmpDir = tempfile.mkdtemp(prefix = 'petsc-')
./config/framework.py: if (itm != '--configModules=PETSc.Configure') and (itm != '--optionsModule=PETSc.compilerOptions'):
./config/framework.py: ' configure.petsc_configure(configure_options)\\n");']
./config/package.py: self.headerPrefix = 'PETSC'
./config/package.py: self.substPrefix = 'PETSC'
./config/package.py: self.useddirectly = 1 # 1 indicates used by PETSc directly, 0 indicates used by a package used by PETSc
./config/package.py: raise RuntimeError('Package '+package.PACKAGE+' needed by '+self.name+' failed to configure.\nMail configure.log to petsc-maint@mcs.anl.gov.')
./config/package.py: '''Find an installation and check if it can work with PETSc'''
./config/package.py: or all of its methods (see config/PETSc/packages/hdf5.py, for example).
./config/package.py: raise RuntimeError('Package '+package.PACKAGE+' needed by '+self.name+' failed to configure.\nMail configure.log to petsc-maint@mcs.anl.gov.')
./config/package.py: '''Find an installation and check if it can work with PETSc'''
./config/packages/__init__.py:all = ['f2cblaslapack','BlasLapack', 'CHOLMOD', 'exodusii', 'scientificpython', 'fiat', 'MOAB', 'MPI', 'netcdf', 'PETSc', 'UMFPACK', 'boost', 'cusp', 'thrust', 'hdf5']
./config/packages/BlasLapack.py: self.download= ['http://ftp.mcs.anl.gov/pub/petsc/externalpackages/fblaslapack-3.1.1.tar.gz']
./config/packages/boost.py: self.download = ['http://ftp.mcs.anl.gov/pub/petsc/externalpackages/boost_minimal_1_42_0.tar.gz']
./config/packages/CHOLMOD.py: if self.checkCompile('#ifdef PETSC_HAVE_LIMITS_H\n #include <limits.h>\n#endif\n', 'long long i=ULONG_MAX;\n\nif (i);\n'):
./config/packages/exodusii.py: self.download = ['http://ftp.mcs.anl.gov/pub/petsc/externalpackages/exodusii-5.14-petsc.tgz']
./config/packages/exodusii.py: output,err,ret = config.base.Configure.executeShellCommand('cd '+self.packageDir+' && make -f Makefile.petsc clean && make -f Makefile.petsc && make -f Makefile.petsc install', timeout=2500, log = self.framework.log)
./config/packages/f2cblaslapack.py: self.download = ['http://ftp.mcs.anl.gov/pub/petsc/externalpackages/f2cblaslapack-3.4.1.q.tar.gz']
./config/packages/fiat.py: self.download = ['http://launchpad.net/fiat/0.x/0.9.9/+download/fiat-0.9.9.tar.gz'] # 'http://ftp.mcs.anl.gov/pub/petsc/externalpackages/fiat-dev.tar.gz'
./config/packages/fiat.py: # Copy FIAT into $PETSC_ARCH/lib/python/site-packages
./config/packages/fiat.py: '''Find an installation ando check if it can work with PETSc'''
./config/packages/hdf5.py: self.download = ['http://ftp.mcs.anl.gov/pub/petsc/externalpackages/hdf5-1.8.8-p1.tar.gz']
./config/packages/MOAB.py: self.downloadpath = 'http://ftp.mcs.anl.gov/pub/petsc/externalpackages/'
./config/packages/MPI.py: includes = '#ifdef PETSC_HAVE_STDLIB_H\n #include <stdlib.h>\n#endif\n#include <mpi.h>\n'
./config/packages/MPI.py: # Even though MPI-Uni is not an external package (it is in PETSc source) we need to stick the
./config/packages/MPI.py: # include path for its mpi.h and mpif.h so that external packages that are built with PETSc to
./config/packages/MPI.py: self.mpiexec = '${PETSC_DIR}/bin/mpiexec.uni'
./config/packages/MPI.py: self.addMakeMacro('MPIEXEC','${PETSC_DIR}/bin/mpiexec.uni')
./config/packages/MPI.py: self.version = 'PETSc MPIUNI uniprocessor MPI replacement'
./config/packages/MPI.py: '''Checks for missing prototypes, which it adds to petscfix.h'''
./config/packages/MPI.py: raise RuntimeError('Cannot install more than one of OpenMPI or MPICH-2 for a single configuration. \nUse different PETSC_ARCH if you want to be able to switch between two')
./config/packages/MPI.py: raise RuntimeError('Currently --download-openmpi option does not work with --prefix install.\nSuggest installing OpenMPI separately, and then configuring PETSc with --with-mpi-dir option.')
./config/packages/MPI.py: f = file(os.path.join(self.packageDir, 'args.petsc'), 'w')
./config/packages/MPI.py: if self.installNeeded('args.petsc'):
./config/packages/MPI.py: if os.path.isfile(os.path.join(self.packageDir, 'args.petsc')):
./config/packages/MPI.py: os.rename(os.path.join(self.packageDir, 'args.petsc'), os.path.join(self.packageDir, 'args.petsc.bkp'))
./config/packages/MPI.py: f = file(os.path.join(self.packageDir, 'args.petsc'), 'w')
./config/packages/MPI.py: if self.installNeeded('args.petsc'):
./config/packages/PETSc.py: There is a wierd role reversal that can happen. If we look for PETSc, but
./config/packages/PETSc.py:PETSc, we contribute objects to the PETSc which will be built.
./config/packages/PETSc.py:class InvalidPETScError(RuntimeError):
./config/packages/PETSc.py: desc = ['PETSc:']
./config/packages/PETSc.py: help.addArgument('PETSc', '-with-petsc=<bool>', nargs.ArgBool(None, 1, 'Activate PETSc'))
./config/packages/PETSc.py: help.addArgument('PETSc', '-with-petsc-dir=<root dir>', nargs.ArgDir(None, None, 'Specify the root directory of the PETSc installation'))
./config/packages/PETSc.py: help.addArgument('PETSc', '-with-petsc-arch=<arch>', nargs.Arg(None, None, 'Specify PETSC_ARCH'))
./config/packages/PETSc.py: help.addArgument('PETSc', '-download-petsc=<bool>', nargs.ArgBool(None, 0, 'Install PETSc'))
./config/packages/PETSc.py: help.addArgument('PETSc', '-with-petsc-shared=<bool>', nargs.ArgBool(None, 1, 'Require that the PETSc library be shared'))
./config/packages/PETSc.py: petscConf = None
./config/packages/PETSc.py: for (name, (petscDir, petscArch)) in self.getLocations():
./config/packages/PETSc.py: petscPythonDir = os.path.join(petscDir, 'python')
./config/packages/PETSc.py: sys.path.append(petscPythonDir)
./config/packages/PETSc.py: confPath = os.path.join(petscDir, petscArch,'conf')
./config/packages/PETSc.py: petscConf = framework.loadFramework(confPath)
./config/packages/PETSc.py: if petscConf:
./config/packages/PETSc.py: self.logPrint('Loaded PETSc-AS configuration ('+name+') from '+confPath)
./config/packages/PETSc.py: self.location = (petscDir, petscArch)
./config/packages/PETSc.py: self.logPrint('PETSc-AS has no cached configuration in '+confPath)
./config/packages/PETSc.py: sys.path.remove(petscPythonDir)
./config/packages/PETSc.py: if not petscConf:
./config/packages/PETSc.py: self.downloadPETSc()
./config/packages/PETSc.py: framework.addPackageDependency(petscConf, confPath)
./config/packages/PETSc.py: self.languages = framework.require('PETSc.utilities.languages', self)
./config/packages/PETSc.py: def getPETScArch(self, petscDir):
./config/packages/PETSc.py: '''Return the allowable PETSc architectures for a given root'''
./config/packages/PETSc.py: if 'with-petsc-arch' in self.framework.argDB:
./config/packages/PETSc.py: yield self.framework.argDB['with-petsc-arch']
./config/packages/PETSc.py: elif 'PETSC_ARCH' in os.environ:
./config/packages/PETSc.py: yield os.environ['PETSC_ARCH']
./config/packages/PETSc.py: raise InvalidPETScError('Must use setenv PETSC_ARCH or --with-petsc-arch')
./config/packages/PETSc.py: '''Return all allowable locations for PETSc'''
./config/packages/PETSc.py: raise InvalidPETScError('Configured PETSc is not usable')
./config/packages/PETSc.py: if self.framework.argDB['download-petsc'] == 1:
./config/packages/PETSc.py: yield self.downloadPETSc()
./config/packages/PETSc.py: raise InvalidPETScError('Downloaded PETSc is not usable')
./config/packages/PETSc.py: if 'with-petsc-dir' in self.framework.argDB:
./config/packages/PETSc.py: petscDir = self.framework.argDB['with-petsc-dir']
./config/packages/PETSc.py: for petscArch in self.getPETScArch(petscDir):
./config/packages/PETSc.py: yield ('User specified installation root', (petscDir, petscArch))
./config/packages/PETSc.py: raise InvalidPETScError('No working architecitures in '+str(petscDir))
./config/packages/PETSc.py: elif 'PETSC_DIR' in os.environ:
./config/packages/PETSc.py: petscDir = os.environ['PETSC_DIR']
./config/packages/PETSc.py: for petscArch in self.getPETScArch(petscDir):
./config/packages/PETSc.py: yield ('User specified installation root', (petscDir, petscArch))
./config/packages/PETSc.py: raise InvalidPETScError('No working architecitures in '+str(petscDir))
./config/packages/PETSc.py: for petscArch in self.getPETScArch(petscDir):
./config/packages/PETSc.py: yield ('Default compiler locations', ('', petscArch))
./config/packages/PETSc.py: petscDirRE = re.compile(r'(PETSC|pets)c(-.*)?')
./config/packages/PETSc.py: if petscDirRE.match(d):
./config/packages/PETSc.py: if petscDirRE.match(d):
./config/packages/PETSc.py: if petscDirRE.match(d):
./config/packages/PETSc.py: def downloadPETSc(self):
./config/packages/PETSc.py: if self.framework.argDB['download-petsc'] == 0:
./config/packages/PETSc.py: raise RuntimeError('No functioning PETSc located')
./config/packages/PETSc.py: # Download and build PETSc
./config/packages/PETSc.py: dir = property(getDir, doc = 'The PETSc root directory')
./config/packages/PETSc.py: arch = property(getArch, doc = 'The PETSc architecture')
./config/packages/PETSc.py: found = property(getFound, doc = 'Did we find a valid PETSc installation')
./config/packages/PETSc.py: name = property(getName, doc = 'The PETSc installation type')
./config/packages/PETSc.py: include = property(getInclude, doc = 'The PETSc include directories')
./config/packages/PETSc.py: lib = property(getLib, doc = 'The PETSc libraries')
./config/packages/PETSc.py: version = property(getVersion, doc = 'The PETSc version')
./config/packages/PETSc.py: otherIncludes = property(getOtherIncludes, setOtherIncludes, doc = 'Includes needed to compile PETSc')
./config/packages/PETSc.py: otherLibs = property(getOtherLibs, setOtherLibs, doc = 'Libraries needed to link PETSc')
./config/packages/PETSc.py: '''Check for PETSc creation functions in libraries, which can be a list of libraries or a single library
./config/packages/PETSc.py: - PetscInitialize from libpetsc
./config/packages/PETSc.py: - VecCreate from libpetscvec
./config/packages/PETSc.py: - MatCreate from libpetscmat
./config/packages/PETSc.py: - DMDestroy from libpetscdm
./config/packages/PETSc.py: - KSPCreate from libpetscksp
./config/packages/PETSc.py: - SNESCreate from libpetscsnes
./config/packages/PETSc.py: - TSCreate from libpetscts
./config/packages/PETSc.py: found = (self.libraries.check(libraries, 'PetscInitializeNoArguments', otherLibs = self.otherLibs, prototype = 'int PetscInitializeNoArguments(void);', cxxMangle = not self.languages.cSupport) and
./config/packages/PETSc.py: self.libraries.check(libraries, 'KSPDestroy', otherLibs = self.otherLibs, prototype = 'typedef struct _p_KSP *KSP;int KSPDestroy(KSP*);', call = 'KSPDestroy((KSP*) 0)', cxxMangle = not self.languages.cSupport) andPetscViewerASCIISynchronizedAllow
./config/packages/PETSc.py: '''Check that petsc.h is present'''
./config/packages/PETSc.py: found = self.checkPreprocess('#include <petsc.h>\n')
./config/packages/PETSc.py: def checkPETScLink(self, includes, body, cleanup = 1, codeBegin = None, codeEnd = None, shared = None):
./config/packages/PETSc.py: '''Analogous to checkLink(), but the PETSc includes and libraries are automatically provided'''
./config/packages/PETSc.py: '''Checking that we can link a PETSc executable'''
./config/packages/PETSc.py: if not self.checkPETScLink('#include <petsclog.h>\n', 'PetscLogDouble time;\nPetscErrorCode ierr;\n\nierr = PetscGetTime(&time); CHKERRQ(ierr);\n'):
./config/packages/PETSc.py: self.logPrint('PETSc cannot link, which indicates a problem with the PETSc installation')
./config/packages/PETSc.py: self.logPrint('PETSc can link with '+self.languages.clanguage)
./config/packages/PETSc.py: if not self.checkPETScLink('#define PETSC_USE_EXTERN_CXX\n#include <petsc.h>\n', 'PetscLogDouble time;\nPetscErrorCode ierr;\n\nierr = PetscGetTime(&time); CHKERRQ(ierr);\n'):
./config/packages/PETSc.py: self.logPrint('PETSc cannot link C++ but can link C, which indicates a problem with the PETSc installation')
./config/packages/PETSc.py: self.logPrint('PETSc can link with C++')
./config/packages/PETSc.py: if not self.checkPETScLink('', ' integer ierr\n real time\n call PetscGetTime(time, ierr)\n'):
./config/packages/PETSc.py: self.logPrint('PETSc cannot link Fortran, but can link C, which indicates a problem with the PETSc installation\nRun with -with-fc=0 if you do not wish to use Fortran')
./config/packages/PETSc.py: self.logPrint('PETSc can link with Fortran')
./config/packages/PETSc.py: '''Check that the libraries for PETSc are shared libraries'''
./config/packages/PETSc.py: # since they are already copied into the PETSc dynamic library.
./config/packages/PETSc.py: isShared = self.libraries.checkShared('#include <petsc.h>\n', 'PetscInitialize', 'PetscInitialized', 'PetscFinalize', checkLink = self.checkPETScLink, libraries = libraries, initArgs = '&argc, &argv, 0, 0', boolType = 'PetscBool ', executor = self.mpi.mpiexec)
./config/packages/PETSc.py: '''Determine the PETSc version'''
./config/packages/PETSc.py: majorRE = re.compile(r'^#define PETSC_VERSION_MAJOR([\s]+)(?P<versionNum>\d+)[\s]*$');
./config/packages/PETSc.py: minorRE = re.compile(r'^#define PETSC_VERSION_MINOR([\s]+)(?P<versionNum>\d+)[\s]*$');
./config/packages/PETSc.py: subminorRE = re.compile(r'^#define PETSC_VERSION_SUBMINOR([\s]+)(?P<versionNum>\d+)[\s]*$');
./config/packages/PETSc.py: patchRE = re.compile(r'^#define PETSC_VERSION_PATCH([\s]+)(?P<patchNum>\d+)[\s]*$');
./config/packages/PETSc.py: dateRE = re.compile(r'^#define PETSC_VERSION_DATE([\s]+)"(?P<date>(Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec) \d\d?, \d\d\d\d)"[\s]*$');
./config/packages/PETSc.py: input = file(os.path.join(self.dir, 'include', 'petscversion.h'))
./config/packages/PETSc.py: lines.append('#define PETSC_VERSION_PATCH'+m4.group(1)+str(patchNum)+'\n')
./config/packages/PETSc.py: lines.append('#define PETSC_VERSION_DATE'+m5.group(1)+'"'+self.date+'"\n')
./config/packages/PETSc.py: self.logPrint('Found PETSc version (%s,%s,%s) patch %s on %s' % (majorNum, minorNum, subminorNum, patchNum, self.date))
./config/packages/PETSc.py: self.logPrint('', 3, 'petsc')
./config/packages/PETSc.py: yield [os.path.join(d, 'libpetsc'+lib+'.a') for lib in libs]
./config/packages/PETSc.py: yield ['libpetsc'+lib+'.a' for lib in libs]
./config/packages/PETSc.py: '''Find a working PETSc
./config/packages/PETSc.py: - Right now, C++ builds are required to use PETSC_USE_EXTERN_CXX'''
./config/packages/PETSc.py: self.framework.logPrint('Checking for a functional PETSc in '+name+', location/origin '+str(location))
./config/packages/PETSc.py: self.framework.logPrint('PETSc in '+name+', location/origin '+str(location)+' failed checkWorkingLink test')
./config/packages/PETSc.py: self.framework.logPrint('PETSc in '+name+', location/origin '+str(location)+' failed checkInclude test with includeDir: '+str(includeDir))
./config/packages/PETSc.py: self.framework.logPrint('PETSc in '+name+', location/origin '+str(location)+' failed checkIncludes test')
./config/packages/PETSc.py: self.framework.logPrint('PETSc in '+name+', location/origin '+str(location)+' failed checkLib test with libraries: '+str(libraries))
./config/packages/PETSc.py: if self.framework.argDB['with-petsc-shared']:
./config/packages/PETSc.py: self.framework.logPrint('PETSc in '+name+', location/origin '+str(location)+' failed checkSharedLibrary test with libraries: '+str(libraries))
./config/packages/PETSc.py: self.logPrint('Choose PETSc '+self.version+' in '+self.name)
./config/packages/PETSc.py: raise RuntimeError('Could not locate any functional PETSc')
./config/packages/PETSc.py: - HAVE_PETSC is defined if a working PETSc is found
./config/packages/PETSc.py: - PETSC_INCLUDE and PETSC_LIB are command line arguments for the compile and link'''
./config/packages/PETSc.py: self.addDefine('HAVE_PETSC', 1)
./config/packages/PETSc.py: self.addSubstitution('PETSC_INCLUDE', ' '.join([self.headers.getIncludeArgument(inc) for inc in self.include]))
./config/packages/PETSc.py: self.addSubstitution('PETSC_LIB', ' '.join(map(self.libraries.getLibArgument, self.lib)))
./config/packages/scientificpython.py: self.download = ['http://ftp.mcs.anl.gov/pub/petsc/externalpackages/ScientificPythonSimple.tar.gz']
./config/packages/scientificpython.py: self.logPrintBox('Installing Scientific Python (PETSc version)')
./config/packages/scientificpython.py: # Copy ScientificPython into $PETSC_ARCH/lib/python2.*/site-packages
./config/packages/scientificpython.py: '''Find an installation ando check if it can work with PETSc'''
./config/packages/UMFPACK.py: self.download = ['http://ftp.mcs.anl.gov/pub/petsc/externalpackages/UMFPACK-5.5.1.tar.gz']
./config/packages/UMFPACK.py: if self.checkCompile('#ifdef PETSC_HAVE_LIMITS_H\n #include <limits.h>\n#endif\n', 'long long i=ULONG_MAX;\n\nif (i);\n'):
./config/programs.py: help.addArgument('PETSc', '-with-make=<prog>', nargs.Arg(None, 'make', 'Specify make'))
./config/programs.py: help.addArgument('PETSc', '-with-make-np=<np>', nargs.ArgInt(None, None, min=1, help='Default number of threads to use for parallel builds'))
./config/programs.py: '''Check for the programs needed to build and run PETSc'''
./config/python.py: raise RuntimeError('Python shared library check failed, probably due to inability to link Python libraries or a bad interaction with the shared linker.\nSuggest running with --with-python=0 if you do not need Python. Otherwise send configure.log to petsc-maint@mcs.anl.gov')
./config/setCompilers.py: msg = msg + 'See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf'
./config/setCompilers.py: raise RuntimeError('MPI compiler wrappers in '+self.framework.argDB['with-mpi-dir']+'/bin do not work. See http://www.mcs.anl.gov/petsc/documentation/faq.html#mpi-compilers')
./config/setCompilers.py: output.find('PETSc Error') >= 0 or
./docs/manual.xml:<varname>sys.path</varname>, as is done for PETSc. In fact, the PETSc driver
./docs/manual.xml: <listitem><para>Verifies <envar>PETSC_ARCH</envar></para></listitem>
./docs/manual.xml: <listitem><para>Adds the default PETSc configure module</para></listitem>
./docs/manual.xml:TEST checkDot from examples.blasTest(/PETSc3/sidl/BuildSystem/docs/examples/blasTest.py:10)
./docs/manual.xml:TESTING: checkDot from examples.blasTest(/PETSc3/sidl/BuildSystem/docs/examples/blasTest.py:10)
./docs/manual.xml:TEST checkCurses from examples.cursesTest(/PETSc3/sidl/BuildSystem/docs/examples/cursesTest.py:9)
./docs/manual.xml:TESTING: checkCurses from examples.cursesTest(/PETSc3/sidl/BuildSystem/docs/examples/cursesTest.py:9)
./docs/manual.xml:taken from the MPI configure module in PETSc.
./docs/manual.xml: PARMETIS_INCLUDE = -I/home/knepley/petsc-dev/externalpackages/parmetis/build/Darwin-x86_64/include
./docs/manual.xml: PARMETIS_LIB = -L/home/knepley/petsc-dev/externalpackages/parmetis/build/Darwin-x86_64/lib -lparmetis -lmetis
./docs/manual.xml:<prompt>petsc-dev$</prompt> <command>./config/configure.py --with-batch</command>
./docs/manual.xml:<prompt>petsc-dev$</prompt> <command>./make.py</command>
./docs/manual.xml:<prompt>petsc-dev$</prompt> <command>./make.py -help</command>
Binary file ./docs/tutorials/GettingStartedwithSIDL.ppt matches
./docs/website/faq.html:<title>PETSc 3</title>
./docs/website/faq.html: are rewriting all of PETSc to use SIDL and plan to do all future software
./docs/website/index.html:<title>PETSc-CS</title>
./docs/website/index.html:<p align="left">If you have any problems please send mail to <a href="mailto:petsc-maint@mcs.anl.gov">petsc-maint@mcs.anl.gov</a>
./docs/website/projects.html:<title>PETSc 3</title>
./install.old/aseBootstrap.py: help.addArgument('Bootstrapper', 'compilerRepository', nargs.Arg(None, 'http://ftp.mcs.anl.gov/pub/petsc/ase/Compiler.tgz', 'The repository containing the SIDL compiler', isTemporary = 1))
./install.old/bootstrap.py: '''The installation directory defaults to the current directory, unless we are in HOME, in which case we create "petsc-3.0"
./install.old/bootstrap.py: self.installPath = os.path.join(self.installPath, 'petsc-3.0')
./install.old/bootstrap.py: if self.OpenURL('http://www.mcs.anl.gov/petsc'):
./install.old/bootstrap.py: CursesInstall.CenterAddStr(stdscr,2,'Hit y if your browser opened to the PETSc web page, otherwise hit n')
./install.old/bootstrap.py: '''The installation directory defaults to the current directory, unless we are in HOME, in which case we create "petsc-3.0"
./install.old/bootstrap.py: path = os.path.join(path, 'petsc-3.0')
./install.old/build.py: m = self.getMakeModule(self.retriever.retrieve(url)).PetscMake(sys.argv[1:], self.argDB)
./install.old/build.py: maker = self.getMakeModule(p.getRoot()).PetscMake(sys.argv[1:], self.argDB)
./install.old/build.py: maker = self.getMakeModule(root).PetscMake(sys.argv[1:], self.argDB)
./install.old/gui.py: for l in ['http://tops.bkbits.net/index.html','http://petsc.bkbits.net/index.html','http://sidl.bkbits.net/index.html','http://mpib.bkbits.net/index.html']:
./install.old/gui.py: if not i.url.find('-release') == -1: self.iprojects.remove(i) # remove PETSc 2 releases
./install.old/gui.py: if not i.url.find('petsc-dev') == -1: self.iprojects.remove(i) # remove PETSc 2
./install.old/urlMapping.py: path = os.path.join('/pub', 'petsc', self.getRepositoryPath(url))
./install.old/urlMapping.py: path = os.path.join('/pub', 'petsc', UrlMappingNew.getRepositoryPath(url))
./make.py: self.project = project.Project('http://petsc.cs.iit.edu/petsc/BuildSystem', self.getRoot())
./make.py: self.project.setWebDirectory('petsc@login.mcs.anl.gov://mcs/www-unix/ase')
./make.py: dir = os.path.join('/mcs','ftp', 'pub', 'petsc', 'sidl')
./make.py: try: self.executeShellCommand('ssh petsc@login.mcs.anl.gov mv '+fullPath+' '+fullPath+'.old')
./make.py: self.cpFile(tarball, 'petsc@login.mcs.anl.gov:/'+dir)
./project.py: self.webdirectory = 'petsc@terra.mcs.anl.gov://mcs/www-unix/sidl/'
./project.py: '''Return the project URL, e.g. http://petsc.cs.iit.edu/petsc/petsc-dev'''
./project.py: '''Sets the project Website directory path petsc@terra.mcs.anl.gov://mcs/www-unix/sidl/'''
./project.py: '''Returns the project Website directory path petsc@terra.mcs.anl.gov://mcs/www-unix/sidl/'''
./regression/buildtest.py: def __init__(self, host, dir = os.path.join('/sandbox', 'petsc', 'petsc-3'), rsh = 'ssh', rcp = 'scp -q -B'):
./regression/buildtest.py: - "host" is the host account, e.g. petsc@smash.mcs.anl.gov
./regression/buildtest.py: '''Remove all PETSc 3 files'''
./regression/buildtest.py: '''Right now, we get bootstrap.py from our PETSc 2 repository, but later we should get it from the webpage'''
./regression/buildtest.py: command = [self.rcp, os.path.join('/sandbox', 'petsc', 'petsc-test', 'python', 'BuildSystem', 'install', 'bootstrap.py'), self.host+':'+self.dir]
./regression/buildtest.py: self.install('http://petsc.cs.iit.edu/petsc/mpib-dev', ['--with-mpi-dir=/home/petsc/soft/linux-rh73/mpich-1.2.4'])
./regression/buildtest.py: command = [self.rcp, self.host+':'+os.path.join(self.dir, 'bootstrap.log'), os.path.join('/home', 'petsc', 'logs', 'nightly')]
./regression/buildtest.py: command = [self.rcp, self.host+':'+os.path.join(self.dir, 'installer.log'), os.path.join('/home', 'petsc', 'logs', 'nightly')]
./regression/buildtest.py: command = [self.rcp, self.host+':'+os.path.join(self.dir, 'make.log'), os.path.join('/home', 'petsc', 'logs', 'nightly')]
./regression/buildtest.py: RemoteBuild(Machine('petsc@smash.mcs.anl.gov'), sys.argv[1:]).run()
./regression/testCase.py:class PETScTest (MPITest):
./regression/testCase.py: petsc = None
./regression/testCase.py: def setUpPETSc(baseClass):
./regression/testCase.py: '''Initialize PETSc'''
./regression/testCase.py: if PETScTest.petsc is None:
./regression/testCase.py: import PETSc.Base
./regression/testCase.py: PETScTest.petsc = PETSc.Base.Base(ASE.Loader.Loader.createClass(baseClass))
./regression/testCase.py: PETScTest.petsc.Initialize()
./regression/testCase.py: atexit.register(PETScTest.petsc.Finalize)
./regression/testCase.py: setUpPETSc = staticmethod(setUpPETSc)
./regression/testCase.py: def setUp(self, baseClass = 'PETSc.Base', mpiBaseClass = 'MPIB.Default.Base'):
./regression/testCase.py: '''Initialize PETSc'''
./regression/testCase.py: PETScTest.setUpPETSc(baseClass)
./regression/testCase.py: '''Cannot finalize PETSc since it can only be initialized once'''
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment