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@atongsa
Created July 19, 2022 08:37
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get alleles from multiple sequence alignment
msa:
>COL1A1_longi
xFSAxxxxxxxxxxxxxxxxxxxxxxG
>COL1A1_African64.aa:_4
MFSFVDLRLLLLLAATALLTHGQEEG-
shell_code:
conda install -c bioconda snp-sites
snp-sites -rv -o t.vcf t.fa
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