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@atyre2
Created July 31, 2017 21:23
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  • Save atyre2/1f09ef79d7ca8d23021b259114255f8f to your computer and use it in GitHub Desktop.
Save atyre2/1f09ef79d7ca8d23021b259114255f8f to your computer and use it in GitHub Desktop.
example code for so
library(tidyverse)
xx <- read_table2(" 1 family1 0.8690661709 0.751969991 0.7188319163 0.8329348587 0.887535770
2 family1 0.2191712498 0.378020942 0.8583653572 0.4347398167 0.463576331
3 family1 0.6999901198 0.641613472 0.3160536611 0.6978992328 0.648399558
4 family3 0.7372355657 0.538900863 0.7362216445 0.7604946053 0.822828410
5 family1 0.7096292505 0.598671265 0.2544588205 0.6133470555 0.607725992
6 family1 0.6360280758 0.566566355 0.5877906233 0.6997789522 0.546953210
7 family1 0.5991758243 0.616002671 0.8369985343 0.8206614441 0.818448365
8 family1 0.8904527922 0.716208368 0.9011345475 0.5670958449 0.727816837
9 family2 0.1452406058 0.207274998 0.4986928476 0.1686444875 0.189754451
10 family2 0.2377809815 0.082862006 0.0558082817 0.1867538810 0.141118673
11 family1 0.4882507205 0.424101322 0.4894468566 0.6359970719 0.572929654
12 family1 0.5040555221 0.655347206 0.9268933483 0.8367227125 0.732448666
13 family1 0.0856226049 0.046513356 0.1497139722 0.0876913564 0.073817098
14 family1 0.9586301369 0.816411264 0.3596417819 0.7656790406 0.549204786
15 family3 0.2922308717 0.303084732 0.3677670036 0.2650845542 0.204274362
16 family2 0.2482501613 0.191236472 0.1830795154 0.2468249229 0.212140334
17 family1 0.5728203862 0.579948215 0.7685731435 0.5923199879 0.446989122
18 family3 0.5570867413 0.860123051 0.9803810036 0.9566881201 0.967919171
19 family1 0.8799546114 0.867326001 0.9713356022 0.9283920046 0.935100788
20 family1 0.5139480650 0.721119537 0.8503378561 0.7767748131 0.751471843
21 family1 0.5965680578 0.693541084 0.7780013246 0.7469886270 0.641316419
22 family1 0.9637233268 0.909563137 0.4890930201 0.7989575169 0.805173486
23 family1 0.2917425898 0.276042683 0.1808922172 0.2787900377 0.326883297
24 family1 0.3257636782 0.669006752 0.7963276549 0.6331725305 0.684705500
25 family3 0.5373867317 0.625906504 0.7515330573 0.5929084663 0.328429846
26 family1 0.9521024127 0.955539653 0.9733179892 0.9433938480 0.946105017
27 family3 0.9890352690 0.838456206 0.2913191125 0.3878896802 0.698469015
28 family3 0.5321956531 0.327110375 0.1245472471 0.4338672900 0.361111518
29 family3 0.8184056056 0.802647838 0.7679651401 0.9041813537 0.934241315",
col_names = c("rn","source", "x", "y", "z", "f", "g"))
library(GGally)
ggpairs(xx[,-1], aes(colour = source, alpha = 0.4))
# see example at http://i.imgur.com/g1jKUUd.png
sessionInfo()
#> R version 3.4.0 (2017-04-21)
#> Platform: x86_64-apple-darwin15.6.0 (64-bit)
#> Running under: macOS Sierra 10.12.5
#>
#> Matrix products: default
#> BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
#> LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib
#>
#> locale:
#> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] GGally_1.3.1 dplyr_0.7.2 purrr_0.2.2.2
#> [4] readr_1.1.1 tidyr_0.6.3 tibble_1.3.3
#> [7] ggplot2_2.2.1.9000 tidyverse_1.1.1
#>
#> loaded via a namespace (and not attached):
#> [1] Rcpp_0.12.11 RColorBrewer_1.1-2 cellranger_1.1.0
#> [4] compiler_3.4.0 plyr_1.8.4 bindr_0.1
#> [7] forcats_0.2.0 tools_3.4.0 digest_0.6.12
#> [10] lubridate_1.6.0 jsonlite_1.5 evaluate_0.10
#> [13] nlme_3.1-131 gtable_0.2.0 lattice_0.20-35
#> [16] pkgconfig_2.0.1 rlang_0.1.1.9000 psych_1.7.5
#> [19] yaml_2.1.14 parallel_3.4.0 haven_1.0.0
#> [22] bindrcpp_0.2 xml2_1.1.1 httr_1.2.1
#> [25] stringr_1.2.0 knitr_1.16 hms_0.3
#> [28] rprojroot_1.2 grid_3.4.0 reshape_0.8.6
#> [31] glue_1.1.1 R6_2.2.1 readxl_1.0.0
#> [34] foreign_0.8-67 rmarkdown_1.6 modelr_0.1.0
#> [37] reshape2_1.4.2 magrittr_1.5 backports_1.1.0
#> [40] scales_0.4.1.9000 htmltools_0.3.6 rvest_0.3.2
#> [43] assertthat_0.2.0 mnormt_1.5-5 colorspace_1.3-2
#> [46] labeling_0.3 stringi_1.1.5 lazyeval_0.2.0
#> [49] munsell_0.4.3 broom_0.4.2
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