pretty-blastn.sh

pretty-blastn.sh

pretty-blastn () {
    column_names=(qaccver saccver pident length mismatch gapopen qstart qend sstart send slen evalue bitscore)
    column_names_string=$(IFS=' ' ; echo "${column_names[*]}")
    header=$(IFS=',' ; echo "${column_names[*]}")
    echo "${header}"
    blastn \
      -outfmt "10 delim=, ${column_names_string}" \
      "${@}"
}