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class BaseKitty
  def meow
    nil
  end
end

class Nancy < BaseKitty
  def meow
    (super || "shshsh")
  end

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#!/usr/bin/env ruby

require "open-uri"
require "parallel"

open("https://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/assembly_summary.txt") do |handle|
  handle.gets # skip header
  handle.gets
  Parallel.each(handle, :in_processes => 6, :progress => 'downloading') do |line|
    row = line.split("\t")

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2017-04-01	2017-10-01	The Bear & Peacock Brewery	 Orlando, FL
2017-02-01		Nude Nite	 Orlando, FL
2016-09-01		Small Works Show City Arts Factory	 Orlando, FL
2016-08-01		Declaration of the Mind 1st Thursdays	 Orlando Museum of Art, FL
2016-07-01		Rock (People's Choice Award Winner)	 1st Thursdays, Orlando Museum of Art, FL
2016-03-01		Viva La Diva	 1st Thursdays, Orlando Museum of Art, FL
2016-03-01		Nude Nite	 Tampa, FL
2016-02-01		Peace and Harmony	 1st Thursdays, Orlando Museum of Art, FL
2016-10-01			 Winter Park, FL
2012-08-01			 Vegas Gallery, Las Vegas, AZ

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def one_hot_encode(sequence: str, alphabet=["G", "A", "T", "C"]):
    """
    one-hot encode a string using a pre-defined alphabet

    >>> one_hot_encode("GATC")
    [1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1]
    """

    vector = ([0] * len(alphabet)) * len(sequence)

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#!/usr/bin/env python3

from models import *


def query(func):
    def run_query():
        rows = get_database().execute_sql(func.__doc__.strip())

        for row in rows:

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#!/usr/bin/env python3

import argparse

import random
import sys

import xopen

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from collections import defaultdict
import statistics
import random


class InfiniteMedian:
    """
    Works well if the number of possible values is low.
    Otherwise, nicht sehr gut
    """

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#!/bin/bash

set -euo pipefail

container_substring="something-greppable-in-the-name"

function check {
  docker ps | grep -v CONTAINER | grep -v ${container_substring}
}

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#!/usr/bin/env python3

import xml.etree.ElementTree as ET
from pprint import pprint
import code

tree = ET.parse('biosample_result.xml')

def expand_blob(blob, attributes={}):
    '''