OMERO ROIs with Z=T=C= -1 Behavior

roi-testing.java

public final class Main {

	private Main() {
		// prevent instantiation of utility class
	}

	public static void main(final String... args) throws DSOutOfServiceException,
		ExecutionException, DSAccessException
		{

		final LoginCredentials cred = new LoginCredentials("root", "omero",
			"localhost", 4064);
		final Logger simpleLogger = new SimpleLogger();
		final Gateway gateway = new Gateway(simpleLogger);
		final ExperimenterData user = gateway.connect(cred);
		final SecurityContext ctx = new SecurityContext(user.getGroupId());
		final ROIFacility roiFac = gateway.getFacility(ROIFacility.class);

		final long roiID = 615;

		final ROIResult loaded = roiFac.loadROI(ctx, roiID);
		System.out.println("Number of ROIs loaded: " + loaded.getROIs().size());
		for (ROIData roi : loaded.getROIs()) {
			System.out.println("ROIData id: " + roi.getId());
			Iterator<List<ShapeData>> itr = roi.getIterator();
			while (itr.hasNext()) {
				final List<ShapeData> shapes = itr.next();
				for (ShapeData shape : shapes)
					System.out.println("ShapeData id: " + shape.getId());
			}
			System.out.println();
		}

		final Collection<ROIData> saved = roiFac.saveROIs(ctx, 2, loaded.getROIs());
		System.out.println("Number of ROIs saved: " + saved.size());
		for (ROIData roi : saved) {
			System.out.println("ROIData id: " + roi.getId());
			Iterator<List<ShapeData>> itr = roi.getIterator();
			while (itr.hasNext()) {
				final List<ShapeData> shapes = itr.next();
				for (ShapeData shape : shapes)
					System.out.println("ShapeData id: " + shape.getId());
			}
			System.out.println();
		}

		gateway.disconnect();
	}

}