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Octopus (Osaka U): PIConGPU 0.4.0-dev Quick-Start
#!/usr/bin/env bash
#
# Author: Axel Huebl
#
# last updated: 2018-03-05
#
# execute:
# curl https://gist.githubusercontent.com/ax3l/080675215fdaf0c8bf0ad054ee8f7bc0/raw/PIConGPU_040-dev_Octopus.sh | bash
PIC_BRANCH="dev"
# get PIConGPU profile
if [ ! -f $HOME/p100_picongpu.profile ]; then
wget -O $HOME/p100_picongpu.profile \
https://raw.githubusercontent.com/ComputationalRadiationPhysics/picongpu/dev/etc/picongpu/octopus-ou/p100_picongpu.profile.example
fi
# load environment
source $HOME/picongpu.profile
export CXXFLAGS="-std=c++11"
set -euf -o pipefail
# build missing software
mkdir -p $HOME/src
mkdir -p $HOME/lib
mkdir -p $HOME/picInput
# CMake
if [ ! -d $CMAKE_ROOT ]; then
echo "Installing CMake..."
cd $HOME/src
curl -L -s -o cmake_3.10.2.tar.gz \
https://cmake.org/files/v3.10/cmake-3.10.2-Linux-x86_64.tar.gz
tar -xf cmake_3.10.2.tar.gz
# pre-compiled binaries
mv cmake-3.10.2-Linux-x86_64 $CMAKE_ROOT
fi
# zlib
if [ ! -d $ZLIB_ROOT ]; then
echo "Installing Zlib..."
cd $HOME/src
wget -O zlib-1.2.11.tar.gz \
https://github.com/madler/zlib/archive/v1.2.11.tar.gz
tar -xf zlib-1.2.11.tar.gz
cd zlib-1.2.11
./configure \
--prefix=$ZLIB_ROOT
make -j4
make install
fi
# MPICH
if [ ! -d $MPI_ROOT ]; then
echo "Installing MPICH..."
cd $HOME/src
curl -L -s -o mpich-3.2.1.tar.gz \
http://www.mpich.org/static/downloads/3.2.1/mpich-3.2.1.tar.gz
tar -xf mpich-3.2.1.tar.gz
cd mpich-3.2.1
./configure --enable-fortran=no \
--prefix=$MPI_ROOT
make
make install
fi
# Boost
if [ ! -d $BOOST_ROOT ]; then
echo "Installing Boost..."
cd $HOME/src
curl -L -s -o boost_1_65_1.tar.gz \
https://dl.bintray.com/boostorg/release/1.65.1/source/boost_1_65_1.tar.gz
tar -xf boost_1_65_1.tar.gz
cd boost_1_65_1
./bootstrap.sh --with-libraries=atomic,chrono,context,date_time,fiber,filesystem,math,program_options,regex,serialization,system,thread \
--prefix=$BOOST_ROOT
./b2 cxxflags="-std=c++11" -j4
./b2 install
fi
# libpng
if [ ! -d $PNG_ROOT ]; then
echo "Installing libpng..."
cd $HOME/src
curl -L -s -o libpng-1.6.34.tar.gz \
ftp://ftp-osl.osuosl.org/pub/libpng/src/libpng16/libpng-1.6.34.tar.gz
tar -xf libpng-1.6.34.tar.gz
cd libpng-1.6.34
CPPFLAGS=-I$ZLIB_ROOT/include LDFLAGS=-L$ZLIB_ROOT/lib \
./configure --enable-static --enable-shared \
--prefix=$PNG_ROOT
make -j4
make install
fi
# PNGwriter
if [ ! -d $PNGwriter_DIR ]; then
echo "Installing PNGwriter..."
cd $HOME/src
git clone -b 0.7.0 https://github.com/pngwriter/pngwriter.git \
$HOME/src/pngwriter
mkdir pngwriter-build
cd pngwriter-build
cmake -DCMAKE_INSTALL_PREFIX=$PNGwriter_DIR \
$HOME/src/pngwriter
make install
fi
# HDF5
if [ ! -d $HDF5_ROOT ]; then
echo "Installing parallel HDF5..."
cd $HOME/src
curl -L -s -o hdf5_1.8.20.tar.gz \
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz
tar -xf hdf5_1.8.20.tar.gz
cd hdf5-1.8.20
CC=$MPI_ROOT/bin/mpicc CXX=$MPI_ROOT/bin/mpic++ ./configure --enable-parallel --enable-shared --disable-fortran \
--prefix=$HDF5_ROOT
CC=$MPI_ROOT/bin/mpicc CXX=$MPI_ROOT/bin/mpic++ make
make install
fi
# Splash
if [ ! -d $Splash_DIR ]; then
echo "Installing Splash..."
git clone -b v1.7.0 https://github.com/ComputationalRadiationPhysics/libSplash.git \
$HOME/src/splash
mkdir $HOME/src/splash-build
cd $HOME/src/splash-build
cmake -DCMAKE_INSTALL_PREFIX=$Splash_DIR $HOME/src/splash
make install
fi
cd $HOME
# get PIConGPU
if [ ! -d $HOME/src/picongpu ]; then
echo "Installing PIConGPU (source)..."
git clone -b $PIC_BRANCH https://github.com/ComputationalRadiationPhysics/picongpu.git \
$HOME/src/picongpu
fi
# message to user
echo ''
echo 'edit user & email within picongpu.profile, e.g. via:'
echo ' vi $HOME/picongpu.profile'
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