Octopus (Osaka U): PIConGPU 0.4.0-dev Quick-Start

PIConGPU_040-dev_Octopus.sh

#!/usr/bin/env bash
#
# Author: Axel Huebl
#
# last updated: 2018-03-05
#
# execute:
#     curl https://gist.githubusercontent.com/ax3l/080675215fdaf0c8bf0ad054ee8f7bc0/raw/PIConGPU_040-dev_Octopus.sh | bash

PIC_BRANCH="dev"

# get PIConGPU profile
if [ ! -f $HOME/p100_picongpu.profile ]; then
    wget -O $HOME/p100_picongpu.profile \
        https://raw.githubusercontent.com/ComputationalRadiationPhysics/picongpu/dev/etc/picongpu/octopus-ou/p100_picongpu.profile.example
fi

# load environment
source $HOME/picongpu.profile
export CXXFLAGS="-std=c++11"

set -euf -o pipefail

# build missing software
mkdir -p $HOME/src
mkdir -p $HOME/lib
mkdir -p $HOME/picInput

#   CMake
if [ ! -d $CMAKE_ROOT ]; then
    echo "Installing CMake..."
    cd $HOME/src
    curl -L -s -o cmake_3.10.2.tar.gz \
        https://cmake.org/files/v3.10/cmake-3.10.2-Linux-x86_64.tar.gz
    tar -xf cmake_3.10.2.tar.gz
    # pre-compiled binaries
    mv cmake-3.10.2-Linux-x86_64 $CMAKE_ROOT
fi

#   zlib
if [ ! -d $ZLIB_ROOT ]; then
    echo "Installing Zlib..."
    cd $HOME/src
    wget -O zlib-1.2.11.tar.gz \
        https://github.com/madler/zlib/archive/v1.2.11.tar.gz
    tar -xf zlib-1.2.11.tar.gz
    cd zlib-1.2.11
    ./configure \
        --prefix=$ZLIB_ROOT
    make -j4
    make install
fi

#   MPICH
if [ ! -d $MPI_ROOT ]; then
    echo "Installing MPICH..."
    cd $HOME/src
    curl -L -s -o mpich-3.2.1.tar.gz \
        http://www.mpich.org/static/downloads/3.2.1/mpich-3.2.1.tar.gz
    tar -xf mpich-3.2.1.tar.gz
    cd mpich-3.2.1
    ./configure --enable-fortran=no \
        --prefix=$MPI_ROOT
    make
    make install
fi

#   Boost
if [ ! -d $BOOST_ROOT ]; then
    echo "Installing Boost..."
    cd $HOME/src
    curl -L -s -o boost_1_65_1.tar.gz \
        https://dl.bintray.com/boostorg/release/1.65.1/source/boost_1_65_1.tar.gz
    tar -xf boost_1_65_1.tar.gz
    cd boost_1_65_1
    ./bootstrap.sh --with-libraries=atomic,chrono,context,date_time,fiber,filesystem,math,program_options,regex,serialization,system,thread \
        --prefix=$BOOST_ROOT
    ./b2 cxxflags="-std=c++11" -j4
    ./b2 install
fi

#   libpng
if [ ! -d $PNG_ROOT ]; then
    echo "Installing libpng..."
    cd $HOME/src
    curl -L -s -o libpng-1.6.34.tar.gz \
        ftp://ftp-osl.osuosl.org/pub/libpng/src/libpng16/libpng-1.6.34.tar.gz
    tar -xf libpng-1.6.34.tar.gz
    cd libpng-1.6.34
    CPPFLAGS=-I$ZLIB_ROOT/include LDFLAGS=-L$ZLIB_ROOT/lib \
        ./configure --enable-static --enable-shared \
        --prefix=$PNG_ROOT
    make -j4
    make install
fi

#   PNGwriter
if [ ! -d $PNGwriter_DIR ]; then
    echo "Installing PNGwriter..."
    cd $HOME/src
    git clone -b 0.7.0 https://github.com/pngwriter/pngwriter.git \
        $HOME/src/pngwriter
    mkdir pngwriter-build
    cd pngwriter-build
    cmake -DCMAKE_INSTALL_PREFIX=$PNGwriter_DIR \
        $HOME/src/pngwriter
    make install
fi

#   HDF5
if [ ! -d $HDF5_ROOT ]; then
    echo "Installing parallel HDF5..."
    cd $HOME/src
    curl -L -s -o hdf5_1.8.20.tar.gz \
        https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz
    tar -xf hdf5_1.8.20.tar.gz
    cd hdf5-1.8.20
    CC=$MPI_ROOT/bin/mpicc CXX=$MPI_ROOT/bin/mpic++ ./configure --enable-parallel --enable-shared --disable-fortran \
        --prefix=$HDF5_ROOT
    CC=$MPI_ROOT/bin/mpicc CXX=$MPI_ROOT/bin/mpic++ make
    make install
fi

#   Splash
if [ ! -d $Splash_DIR ]; then
    echo "Installing Splash..."
    git clone -b v1.7.0 https://github.com/ComputationalRadiationPhysics/libSplash.git \
        $HOME/src/splash
    mkdir $HOME/src/splash-build
    cd $HOME/src/splash-build
    cmake -DCMAKE_INSTALL_PREFIX=$Splash_DIR $HOME/src/splash
    make install
fi

cd $HOME

# get PIConGPU
if [ ! -d $HOME/src/picongpu ]; then
    echo "Installing PIConGPU (source)..."
    git clone -b $PIC_BRANCH https://github.com/ComputationalRadiationPhysics/picongpu.git \
        $HOME/src/picongpu
fi

# message to user
echo ''
echo 'edit user & email within picongpu.profile, e.g. via:'
echo '    vi $HOME/picongpu.profile'