Piz Daint: PIConGPU 0.4.0-dev Quick-Start

PIConGPU_040-dev_PizDaint.sh

#!/usr/bin/env bash
#
# Authors: Axel Huebl, Marco Garten, Klaus Steiniger
#
# last updated: 2019-05-13
#
# execute:
#     wget -O - https://gist.githubusercontent.com/ax3l/68cb4caa597df3def9b01640959ea56b/raw/PIConGPU_040-dev_PizDaint.sh | bash

PIC_BRANCH="dev"

# get PIConGPU profile
if [ ! -f $SCRATCH/picongpu.profile ]; then
    wget -O $SCRATCH/picongpu.profile \
        https://raw.githubusercontent.com/ComputationalRadiationPhysics/picongpu/dev/etc/picongpu/pizdaint-cscs/picongpu.profile.example
fi

# load modules
source $SCRATCH/picongpu.profile

set -euf -o pipefail

# create temporary (24 hours) directory for software source files
mkdir -p /dev/shm/$(whoami)/src
export SOURCE_DIR=/dev/shm/$(whoami)/src

# create directory for picongpu code
mkdir -p $HOME/src

#   zlib
if [ ! -d $ZLIB_ROOT ]; then
    cd $SOURCE_DIR
    wget -O zlib-1.2.11.tar.gz \
        https://github.com/madler/zlib/archive/v1.2.11.tar.gz
    tar -xf zlib-1.2.11.tar.gz
    cd zlib-1.2.11
    ./configure \
        --prefix=$ZLIB_ROOT
    make -j4
    make install
fi
#   libpng
if [ ! -d $PNG_ROOT ]; then
    cd $SOURCE_DIR
    wget -O libpng-1.6.34.tar.gz \
        ftp://ftp-osl.osuosl.org/pub/libpng/src/libpng16/libpng-1.6.34.tar.gz
    tar -xf libpng-1.6.34.tar.gz
    cd libpng-1.6.34
    CPPFLAGS=-I$ZLIB_ROOT/include LDFLAGS=-L$ZLIB_ROOT/lib \
        ./configure --enable-static --enable-shared \
        --prefix=$PNG_ROOT
    make -j4
    make install
fi

#   c-blosc
if [ ! -d $BLOSC_ROOT ]; then
    cd $SOURCE_DIR
    git clone -b v1.12.1 https://github.com/Blosc/c-blosc.git \
        $SOURCE_DIR/c-blosc
    mkdir c-blosc-build
    cd c-blosc-build
    cmake -DCMAKE_INSTALL_PREFIX=$BLOSC_ROOT \
        -DPREFER_EXTERNAL_ZLIB=ON \
        $SOURCE_DIR/c-blosc
    make -j4
    make install
fi

#   Boost
if [ ! -d $BOOST_ROOT ]; then
    cd $SOURCE_DIR
    wget -O boost_1_65_1.tar.gz \
        http://sourceforge.net/projects/boost/files/boost/1.65.1/boost_1_65_1.tar.gz/download
    tar -xf boost_1_65_1.tar.gz
    cd boost_1_65_1
    ./bootstrap.sh --with-libraries=atomic,chrono,context,date_time,fiber,filesystem,math,program_options,regex,serialization,system,thread \
        --prefix=$BOOST_ROOT
    ./b2 cxxflags="-std=c++11" -j4
    ./b2 install
fi

#   ADIOS
if [ ! -d $ADIOS_ROOT ]; then
    cd $SOURCE_DIR
    wget https://users.nccs.gov/~pnorbert/adios-1.13.1.tar.gz
    tar -xf adios-1.13.1.tar.gz
    cd adios-1.13.1
    CFLAGS="-fPIC" ./configure --enable-static --enable-shared \
        --disable-fortran --with-mpi=$MPI_ROOT --with-zlib=$ZLIB_ROOT \
        --with-blosc=$BLOSC_ROOT \
        --prefix=$ADIOS_ROOT
    make
    make install
fi

#   PNGwriter
if [ ! -d $PNGwriter_DIR ]; then
    cd $SOURCE_DIR
    git clone -b 0.7.0 https://github.com/pngwriter/pngwriter.git \
        $SOURCE_DIR/pngwriter
    mkdir pngwriter-build
    cd pngwriter-build
    cmake -DCMAKE_INSTALL_PREFIX=$PNGwriter_DIR \
        $SOURCE_DIR/pngwriter
    make install
fi

#   Splash
if [ ! -d $Splash_DIR ]; then
    git clone -b v1.7.0 https://github.com/ComputationalRadiationPhysics/libSplash.git \
        $SOURCE_DIR/splash
    mkdir $SOURCE_DIR/splash-build
    cd $SOURCE_DIR/splash-build
    cmake -DCMAKE_INSTALL_PREFIX=$Splash_DIR $SOURCE_DIR/splash
    make install
fi

cd $HOME

# get PIConGPU
if [ ! -d $PICSRC ]; then
    git clone -b $PIC_BRANCH https://github.com/ComputationalRadiationPhysics/picongpu.git \
        $PICSRC
fi

# message to user
echo ''
echo 'edit user & email within picongpu.profile, e.g. via:'
echo '    vim $SCRATCH/picongpu.profile'