PIConGPU OSX Quick Start

osx_picongpu.profile

# Name and Path of this Script ############################### (DO NOT change!)
export PIC_PROFILE=$(cd $(dirname $BASH_SOURCE) && pwd)"/"$(basename $BASH_SOURCE)

# User Information ######################################### (edit those lines)
#   - automatically add your name and contact to output file meta data
#   - send me mails on batch system job (b)egin, (e)nd, (a)bortion or (n)o mail
export MY_MAILNOTIFY="n"
export MY_MAIL="someone@example.com"
export MY_NAME="$(whoami) <$MY_MAIL>"

# Text Editor for Tools ###################################### (edit this line)
#   - examples: "nano", "vim", "emacs -nw", "vi" or without terminal: "gedit"
#export EDITOR="nano"

# Software Dependencies #######################################################
#
# need to be compiled by the user
export CMAKE_ROOT=$HOME/lib/cmake-3.10.2
export BOOST_ROOT=$HOME/lib/boost-1.65.1
export PNGwriter_DIR=$HOME/lib/pngwriter-0.7.0
export MPI_ROOT=$HOME/lib/openmpi-2.1.2
export HDF5_ROOT=$HOME/lib/hdf5-1.8.20
export Splash_DIR=$HOME/lib/splash-1.7.0

export LD_LIBRARY_PATH=$BOOST_ROOT/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=$PNGwriter_DIR/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=$MPI_ROOT/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=$HDF5_ROOT/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=$Splash_DIR/lib:$LD_LIBRARY_PATH

export PATH=/usr/local/Cellar/gnu-getopt/1.1.6/bin/:$PATH
export PATH=$CMAKE_ROOT/CMake.app/Contents/bin:$PATH
export PATH=$MPI_ROOT/bin:$PATH
export PATH=$HDF5_ROOT/bin:$PATH
export PATH=$Splash_DIR/bin:$PATH

export CMAKE_PREFIX_PATH=$BOOST_ROOT:$CMAKE_PREFIX_PATH
export CMAKE_PREFIX_PATH=$MPI_ROOT:$CMAKE_PREFIX_PATH
export CMAKE_PREFIX_PATH=$HDF5_ROOT:$CMAKE_PREFIX_PATH

# Environment #################################################################
#
export PICSRC=$HOME/src/picongpu
export PIC_EXAMPLES=$PICSRC/share/picongpu/examples
export PIC_BACKEND="omp2b:native"
# export PIC_BACKEND="cuda:30"

export PATH=$PATH:$PICSRC
export PATH=$PATH:$PICSRC/bin
export PATH=$PATH:$PICSRC/src/splash2txt/build
export PATH=$PATH:$PICSRC/src/tools/bin

export PYTHONPATH=$PICSRC/lib/python:$PYTHONPATH

# "tbg" default options #######################################################
#   - PBS/Torque (qsub)
#   - "k80" queue
export TBG_SUBMIT="bash"
export TBG_TPLFILE="etc/picongpu/bash/mpirun.tpl"

PIConGPU_040-dev_osx.sh

#!/usr/bin/env bash
#
# Author: Axel Huebl
#
# last updated: 2018-03-05
#
# execute:
#     curl https://gist.githubusercontent.com/ax3l/9e77c1b688136ea37b05ff00ea0e420f/raw/PIConGPU_040-dev_osx.sh | bash

PIC_BRANCH="dev"

# get PIConGPU profile
if [ ! -f $HOME/picongpu.profile ]; then
    curl -L -s -o $HOME/picongpu.profile \
        https://gist.githubusercontent.com/ax3l/9e77c1b688136ea37b05ff00ea0e420f/raw/osx_picongpu.profile
fi

# load environment
source $HOME/picongpu.profile
export CXXFLAGS="-std=c++11"

set -euf -o pipefail

# build missing software
mkdir -p $HOME/src
mkdir -p $HOME/lib

#   getopt (GNU version)
#   see https://github.com/ComputationalRadiationPhysics/picongpu/issues/2545
brew install gnu-getopt

#   CMake
if [ ! -d $CMAKE_ROOT ]; then
    echo "Installing CMake..."
    cd $HOME/src
    curl -L -s -o cmake_3.10.2.tar.gz \
        https://cmake.org/files/v3.10/cmake-3.10.2-Darwin-x86_64.tar.gz
    tar -xf cmake_3.10.2.tar.gz
    # pre-compiled binaries
    mv cmake-3.10.2-Darwin-x86_64 $CMAKE_ROOT
fi

#   Boost
if [ ! -d $BOOST_ROOT ]; then
    echo "Installing Boost..."
    cd $HOME/src
    curl -L -s -o boost_1_65_1.tar.gz \
        https://dl.bintray.com/boostorg/release/1.65.1/source/boost_1_65_1.tar.gz
    tar -xf boost_1_65_1.tar.gz
    cd boost_1_65_1
    ./bootstrap.sh --with-libraries=atomic,chrono,context,date_time,fiber,filesystem,math,program_options,regex,serialization,system,thread \
        --prefix=$BOOST_ROOT
    ./b2 cxxflags="-std=c++11" -j4
    ./b2 install
fi

#   PNGwriter
if [ ! -d $PNGwriter_DIR ]; then
    echo "Installing PNGwriter..."
    cd $HOME/src
    git clone -b 0.7.0 https://github.com/pngwriter/pngwriter.git \
        $HOME/src/pngwriter
    mkdir pngwriter-build
    cd pngwriter-build
    cmake -DCMAKE_INSTALL_PREFIX=$PNGwriter_DIR \
        $HOME/src/pngwriter
    make install
fi

#   OpenMPI
if [ ! -d $MPI_ROOT ]; then
    echo "Installing OpenMPI..."
    cd $HOME/src
    curl -L -s -o openmpi_2_1_2.tar.gz \
        https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.2.tar.gz
    tar -xf openmpi_2_1_2.tar.gz
    cd openmpi-2.1.2
    ./configure --disable-mpi-fortran \
        --prefix=$MPI_ROOT
    make
    make install
fi

#   HDF5
if [ ! -d $HDF5_ROOT ]; then
    echo "Installing parallel HDF5..."
    cd $HOME/src
    curl -L -s -o hdf5_1.8.20.tar.gz \
        https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz
    tar -xf hdf5_1.8.20.tar.gz
    cd hdf5-1.8.20
    CC=$MPI_ROOT/bin/mpicc CXX=$MPI_ROOT/bin/mpic++ ./configure --enable-parallel --enable-shared --disable-fortran \
        --prefix=$HDF5_ROOT
    CC=$MPI_ROOT/bin/mpicc CXX=$MPI_ROOT/bin/mpic++ make
    make install
fi

#   Splash
if [ ! -d $Splash_DIR ]; then
    echo "Installing libSplash..."
    git clone -b v1.7.0 https://github.com/ComputationalRadiationPhysics/libSplash.git \
        $HOME/src/splash
    mkdir $HOME/src/splash-build
    cd $HOME/src/splash-build
    cmake -DCMAKE_INSTALL_PREFIX=$Splash_DIR $HOME/src/splash
    make install
fi

cd $HOME

# get PIConGPU
if [ ! -d $HOME/src/picongpu ]; then
    git clone -b $PIC_BRANCH https://github.com/ComputationalRadiationPhysics/picongpu.git \
        $HOME/src/picongpu
fi

# message to user
echo ''
echo 'edit user & email within picongpu.profile, e.g. via:'
echo '    vim $HOME/picongpu.profile'