install php5-gdal (GDAL 2) fails

provision.sh

#!/usr/bin/env bash

# big note: a while after creating this file, I stumbled across https://github.com/phalcon/vagrant/

THIS=`basename $0`
BASE=/vagrant/vagrant
source $BASE/const.sh

UBUNTU_VERSION=`lsb_release -a`

# Belnet repositories for ludicrous speed! (thx Michiel)
cat > /etc/apt/sources.list << EOF
deb http://ftp.belnet.be/ubuntu.com/ubuntu trusty main restricted universe multiverse
deb http://ftp.belnet.be/ubuntu.com/ubuntu trusty-updates main restricted universe multiverse
deb http://security.ubuntu.com/ubuntu trusty-security main restricted universe multiverse
EOF

apt-get -q update

export DEBIAN_FRONTEND=noninteractive
apt-get install -y -q \
    debconf-utils \
    \


function install_varia(){

    apt-get install -q -y \
        git \
        tree \
        lynx lynx-cur \
        htop \
        \

}

function enable_url_rewriting() {
   a2enmod rewrite

    cat << HERE >> /etc/apache2/sites-available/phalcon-rewrite.conf
<VirtualHost *:80>
        ServerAdmin webmaster@localhost
        DocumentRoot /var/www/html

        # we need this block, it is not available in 000-default.conf
        <Directory "/var/www/html">
            AllowOverride All
        </Directory>

        ErrorLog ${APACHE_LOG_DIR}/error.log
        CustomLog ${APACHE_LOG_DIR}/access.log combined

</VirtualHost>
HERE

    a2ensite phalcon-rewrite
    a2dissite 000-default

    service apache2 restart

}

function install_phalcontools(){

    [[ -d phalcon-devtools ]] && rm -rf phalcon-devtools /usr/bin/phalcon

    git clone https://github.com/phalcon/phalcon-devtools.git

    pushd phalcon-devtools
    ln -s $PWD/phalcon.php /usr/bin/phalcon
    chmod ugo+x /usr/bin/phalcon

    popd

}

function install_phalcon(){

    curl -s https://packagecloud.io/install/repositories/phalcon/stable/script.deb.sh | bash

    apt-get install -q -y \
        php5 \
        php5-phalcon \
        php5-pgsql \
        \

    install_phalcontools

    enable_url_rewriting

    # test
    php -i | grep phalcon

}

function install_apache(){

    apt-get install -q -y \
        apache2 \
        \

}

function install_psql(){

    # from https://trac.osgeo.org/postgis/wiki/UsersWikiPostGIS23UbuntuPGSQL96Apt -> this one is worth remembering!
    # see also http://php.net/manual/en/book.pgsql.php

    wget --quiet -O - https://www.postgresql.org/media/keys/ACCC4CF8.asc | apt-key add -

    # Setup postgres repository. Needed for recent postgres/postgis
    sh -c 'echo "deb http://apt.postgresql.org/pub/repos/apt/ $(lsb_release -cs)-pgdg main" > /etc/apt/sources.list.d/pgdg.list'

    apt-get update

    apt-get install -y \
        postgresql-9.6 \
        postgresql-server-dev-9.6 \
        postgresql-9.6-postgis-2.3 \
        postgresql-contrib-9.6 \
        postgresql-client \
        postgis \
        \

    # make psql reachable
    pushd /etc/postgresql/9.6/main/

    cat << HERE >> pg_hba.conf
host all all all password
HERE
    cat << HERE >> postgresql.conf
listen_addresses = '*'
HERE

    popd


    service postgresql restart

}

function install_pgadmin4(){

    # http://askubuntu.com/questions/831262/how-to-install-pgadmin-4-in-desktop-mode-on-ubuntu-16-04
    # (https://www.pgadmin.org/docs4/1.x/server_deployment.html is for mod_uwsgi)

    # aaaa... Python keeps popping up :-)

    apt-get install -q -y \
        python-virtualenv python-pip libpq-dev python-dev \
        \

    # TODO don't run as root
    pushd $PGADMINDIR
    virtualenv pgadmin4
    cd pgadmin4
    source bin/activate

    FILE=pgadmin4-1.3-py2.py3-none-any.whl
    wget https://ftp.postgresql.org/pub/pgadmin3/pgadmin4/v1.3/pip/$FILE

    pip install $FILE

    CONFDIR=lib/python2.7/site-packages/pgadmin4
    CONF_LOCAL=$CONFDIR/config_local.py
    cp $CONFDIR/config.py $CONF_LOCAL
    cat << HERE > $CONF_LOCAL
# modifications for prototype
SERVER_MODE = False # prevent password stuff
DEFAULT_SERVER = '0.0.0.0'
HERE

    # TODO - turn this into a service! at the next reload, this is forgotten.
    LOGFILE=/vagrant/nohup.out.log
    nohup python $CONFDIR/pgAdmin4.py &> $LOGFILE &

    popd
}

function install(){

    DIR=$1
    FILE=$2

    pushd $DIR
    ./configure
    make clean
    make
    make install
    popd

    rm -rf $FILE $DIR

}

function install_proj4(){

    # http://proj4.org/
    FILE=proj-4.9.3
    PACK=$FILE.tar.gz
    wget http://download.osgeo.org/proj/$PACK
    tar -xzf $PACK
    install $FILE $PACK

}

function install_php_geos(){

    apt-get install -q -y \
        php5-dev \
        \

    # git.osgeo.org/gogs/geos/php-geos
    git clone https://git.osgeo.org/gogs/geos/php-geos.git

    pushd php-geos
    ./autogen.sh
    ./configure
    make # generates modules/geos.so
    make install

    popd

#    rm -rf php-geos

}

function install_GEOS(){

   #echo "skipping GEOS" && return

    # https://trac.osgeo.org/geos/

    FILE=geos-3.6.1
    PACK=$FILE.tar.bz2
    wget http://download.osgeo.org/geos/$PACK
    tar -xjf $PACK
    install $FILE $PACK

    install_php_geos
}

function install_php_gdal(){

    # https://www.drupal.org/node/2133103
    apt-get install -q -y \
        libgdal1-dev \
        php5-dev \
        php5-json \
        g++ \
        make \
        \

    pushd /tmp

    REPO=https://github.com/geonef

    P=php5-gdal

    git clone $REPO/$P.git && cd $P

    phpize
    ./configure
    make
    make install
    cat << HERE >  /etc/php5/mods-available/gdal.ini
; configuration for the PHP GDAL extension
extension=gdal.so
HERE
    php5enmod gdal
#    service apache2 restart # postpone to end of script

    popd
    rm -rf $P

    php -i | grep gdal

}

function install_gdal(){

    echo "skipping GDAL for now (because time expensive to build)" && return

    # http://trac.osgeo.org/gdal/wiki/DownloadSource
    FILE=gdal-2.1.3
    PACK=$FILE.tar.gz
    wget http://download.osgeo.org/gdal/2.1.3/$PACK

    tar -xzf $PACK
    install $FILE $PACK

    install_php_gdal

}

function install_postgis(){

    # from http://www.binpress.com/tutorial/introduction-to-postgis-part-1/24

    apt-get install -y -q \
        libproj-dev \
        libgeos-3.4.2 \
        libjson0 libjson0-dev \
        gcc g++ \
        libxml2 libxml2-dev \
        libgdal-dev \
        \

    time install_proj4
    time install_GEOS
    time install_gdal

    FILE=postgis-2.2.5
    PACK=$FILE.tar.gz
    wget http://download.osgeo.org/postgis/source/$PACK
    tar -xzf $PACK

    pushd $FILE
    ./configure --with-raster
    make clean
    time make
    make install
    popd

    ldconfig

#    make all this globally available in PATH
    echo "PATH=${PATH}:/usr/lib/postgresql/9.3/bin/" > /etc/environment
}

install_varia

time install_psql

time install_phalcon
time install_apache

time install_postgis

time install_pgadmin4

service apache2 restart

$BASE/configure.sh

echo "machine installed"

related issue: geonef/php5-gdal#13

original error (now corrected)

==> default: + make
==> default: /bin/bash /tmp/php5-gdal/libtool --mode=compile g++  -I. -I/tmp/php5-gdal -DPHP_ATOM_INC -I/tmp/php5-gdal/include -I/tmp/php5-gdal/main -I/tmp/php5-gdal -I/usr/include/php5 -I/usr/include/php5/main -I/usr/include/php5/TSRM -I/usr/include/php5/Zend -I/usr/include/php5/ext -I/usr/include/php5/ext/date/lib -I/usr/include/gdal  -DHAVE_CONFIG_H  -g -O2   -c /tmp/php5-gdal/php_gdal.cc -o php_gdal.lo
==> default: libtool: compile:  g++ -I. -I/tmp/php5-gdal -DPHP_ATOM_INC -I/tmp/php5-gdal/include -I/tmp/php5-gdal/main -I/tmp/php5-gdal -I/usr/include/php5 -I/usr/include/php5/main -I/usr/include/php5/TSRM -I/usr/include/php5/Zend -I/usr/include/php5/ext -I/usr/include/php5/ext/date/lib -I/usr/include/gdal -DHAVE_CONFIG_H -g -O2 -c /tmp/php5-gdal/php_gdal.cc  -fPIC -DPIC -o .libs/php_gdal.o
==> default: /tmp/php5-gdal/php_gdal.cc: In function 'void zm_info_gdal(zend_module_entry*)':
==> default: /tmp/php5-gdal/php_gdal.cc:310:50: warning: 'static OGRSFDriverRegistrar* OGRSFDriverRegistrar::GetRegistrar()' is deprecated (declared at /usr/include/gdal/ogrsf_frmts.h:320) [-Wdeprecated-declarations]
==> default:    registrar = OGRSFDriverRegistrar::GetRegistrar();
==> default:                                                   ^
==> default: /tmp/php5-gdal/php_gdal.cc:311:45: warning: 'int OGRSFDriverRegistrar::GetDriverCount()' is deprecated (declared at /usr/include/gdal/ogrsf_frmts.h:324) [-Wdeprecated-declarations]
==> default:    for (i = 0; i < registrar->GetDriverCount(); ++i) {
==> default:                                              ^
==> default: /tmp/php5-gdal/php_gdal.cc:312:39: warning: 'GDALDriver* OGRSFDriverRegistrar::GetDriver(int)' is deprecated (declared at /usr/include/gdal/ogrsf_frmts.h:325) [-Wdeprecated-declarations]
==> default:      ogrDriver = registrar->GetDriver(i);
==> default:                                        ^
==> default: /tmp/php5-gdal/php_gdal.cc:312:39: error: invalid conversion from 'GDALDriver*' to 'OGRSFDriver*' [-fpermissive]
==> default: /tmp/php5-gdal/php_gdal.cc:313:31: warning: 'virtual const char* OGRSFDriver::GetName()' is deprecated (declared at /usr/include/gdal/ogrsf_frmts.h:275) [-Wdeprecated-declarations]
==> default:      name = ogrDriver->GetName();
==> default:                                ^
==> default: make:
==> default: *** [php_gdal.lo] Error 1