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balhoff/Anderson_2001.nex

Created July 30, 2012 18:08
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Anderson_2001.nex
#NEXUS
[written Mon Feb 20 15:22:05 EST 2012 by Mesquite version 2.75 (build 564) at NI7549.local/10.0.1.4]
BEGIN TAXA;
TITLE Taxa;
DIMENSIONS NTAX=49;
TAXLABELS
Acanthostega Proterogyrinus Balanerpeton Dendrerpeton Tuditanus Asaphestera Hapsidoparion Llistrofus Saxonerpeton Pantylus Cardiocephalus_sternbergi Cardiocephalus_peabodyi Euryodus_primus Euryodus_dalyae Pelodosotis Micraroter Rhynchonkos Eocaecilia Microbrachis Hyloplesion Mazon_Creek Batropetes Carrolla Quasicaecilia Odonterpeton Utaherpeton Stegotretus Sparodus_ Sauropleura_pectinata Sauropleura_scalaris Sauropleura_bairdi Lepterpeton Ptyonius Ctenerpeton Urocordylus Keraterpeton_galvani Batrachiderpeton Diceratosaurus Diplocaulus_magnicornis Diplocaulus_primus Diploceraspis Scincosaurus Brachydectes Adelogyrinus Oestocephalus Phlegethontia Greererpeton Seymouria_baylorensis Limnoscelis
;
END;
BEGIN CHARACTERS;
TITLE Character_Matrix;
DIMENSIONS NCHAR=182;
FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3";
CHARSTATELABELS
1 Intertemporal / present absent, 2 Supratemporal / present absent, 3 ST_exposure_on_occiput / absent present, 4 'Tabular-postorbital' / absent Present, 5 'T-PF' / absent present, 6 'Squamosal-Tabular' / absent present fused, 7 'Squamosal-Temporal_area' / weakly_overlapping sutural, 8 'L-PrF' / 'mobile_(L_on_shelf_of_PF)' sutural, 9 Lacrimal / present absent, 10 L_to_naris / present absent, 11 L_to_orbit / absent present, 12 lacrimal_orbital_processes / only_ventral_present dorsal_and_ventral_present, 13 Quadratojugal / present absent, 14 'Quadratojugal-Jugal_contact' / present absent, 15 'Quadratojugal-Maxillary_contact' / present absent, 16 Frontals / paired fused, 17 Frontal_into_orbit / no yes, 18 Nasals / present absent, 19 alary_processes_of_premax / absent present, 20 Septomaxilla / ossified unossified, 21 Prefrontal_into_external_naris / distant_from near present, 22 external_naris_in_dorsal_view / exposed not_exposed, 23 dorsal_exposure_of_premax / broad narrow none, 24 dorsal_shape_of_skull / triangular diamond, 25 Posterior_skull_margin / concave straight convex undulating., 26 snout / blunt pointed, 27 snout / short long, 28 'Q_-internal_flange_of_Sq' / absent present, 29 otic_notch / present absent, 30 raised_orbital_rim / absent present, 31 Postorbital / present absent, 32 'J-PO_interfingered_processes' / absent present, 33 PO_in_orbital_margin / present absent, 34 'Parietal-postorbital_contact' / absent present, 35 'parietal-squamosal_contact' / absent present, 36 'parietal-tabular_contact' / absent present, 37 Postparietals / paired fused absent, 38 parietal_foramen / present absent, 39 postparietals / moderate large, 40 'postparietal-squamosal_contact' / absent present, 41 'squamosal-jugal_contact' / present absent, 42 Tabular / present absent, 43 '"Tabular_horns"' / absent present, 44 Tabular_horns / parallel_or_slightly_divergent widely_divergent, 45 Sq_forms_base_of_tabular_horn / absent present, 46 Lateral_line_canal_grooves / present absent, 47 Dermal_sculpturing / circular_pits shallow_ridges_and_grooves little_to_none, 48 premaxilla_anterior_margin / vertical overturned, 49 Maxilla_into_orbit / no yes, 50 Maxilla_into_external_naris / present absent, 51 Maxilla_entire_ventral_naris / absent present, 52 maxilla / longer_than_palatine shorter_than_palatine, 53 marginal_teeth / vertical turned_medially, 54 marginal_teeth_largest_anterior / absent present, 55 marginal_teeth / pointed_pegs blunt_pegs large_cones, 56 Number_of_premax_teeth / '>=10' '5-9' '<5', 57 Number_of_max_teeth / '>=30' '20-29' '<20', 58 teeth_laterally_compressed / no yes, 59 'Enlarged_teeth_mid-toothrow' / absent present, 60 teeth / simple_points multiple_cusps, 61 Multiple_Cusp_Orientation / 'Labio-lingual' 'anterio-posterior', 62 Enamel_fluting / absent present, 63 'labyrinthine_in-folding' / present absent, 64 occipital_profile / low_and_wide high_and_wide high_and_narrow, 65 supraoccipital / absent present, 66 Occipital_condyle / concave convex, 67 occipital_condyle / 'single,_with_basioccipital' double, 68 jugular_foramen / between_opistotic_and_exoccipit through_exoccipital, 69 opistotic_connection_to_skull_r / strongly_integrated loosely_articulated, 70 jaw_articulation / posterior_to_occiput even_with_occiput anterior_to_occiput 'far_anterior_(>20%_BSL)', 71 Internal_nares / widely_separated narrowly_separated, 72 Palatal_teeth / present absent, 73 palatal_teeth / 'single_pit-pairs' multiple_in_rows multiple_random, 74 vomerine_teeth / present absent, 75 denticles_on_pterygoid / present absent, 76 teeth_on_pterygoid / absent present, 77 denticles_on_vomers / present absent, 78 denticles_on_palatines / present absent, 79 denticles_on_parasphenoid / present absent, 80 Palatal_teeth / larger_than_marginals equal_to_marginals smaller_than_marginals, 81 parasphenoid / medial_of_stapes under_footplate_of_stapes, 82 basicranial_articulation / loose sutured_or_fused, 83 stapes / perforated_stem imperforate_stem no_stem, 84 footplate_of_stapes / oval round palmate, 85 dorsal_process_of_stapes / absent present, 86 '"accessory_ossicle"' / absent present, 87 pleurosphenoid / unossified ossified, 88 sphenethmoid / ossified unossified, 89 interpterygoid_vaccuities / 'narrow_("closed")' wide fused_at_midline, 90 pterygoids_contact_anteriorly / present absent, 91 'pterygoid-exoccipital_contact' / absent present, 92 ectopterygoid / present absent, 93 '"pharangeobranchial_pouches"' / absent present, 94 dentary / long short, 95 dentary_forms_coronoid_process / absent present, 96 surangular / normal reduced absent, 97 angular / narrow deep, 98 number_of_splenals / 2 1 0, 99 splenal_exposed_laterally / present absent, 100 meckelian_fossae / 2_or_more 1 0, 101 'Ventral_border_of_Meckel''s_foss' / splenal angular, 102 retroarticular_process / absent present, 103 retroarticular_process / straight hooked, 104 articulation_to_tooth_row / above equal below, 105 'angular_extends_to_(lat_view)' / posterior_tooth_row middle_of_tooth_row, 106 number_of_coronoids / 3 2 1 0, 107 coronoid_teeth / present absent, 108 coronoid_teeth / larger_than_marginals equal_to_marginals smaller_than_marginals, 109 symphysis / dentary_and_splenal dentary_alone, 110 jaw_sculpture / present absent, 111 ossified_hyoids / present absent, 112 number_of_acessory_articulation / 0 1 2_or_more, 113 strong_lateral_ridge_btwn_zygos / absent present, 114 caudal_processes_btw_depression / absent present, 115 trunk_intercentra / present absent, 116 'atlas-axis_intercentra' / present absent, 117 trunk_neural_arch_to_centrum / loosely_articulated sutured fused, 118 base_of_neural_spine / equal_to_or_wider_than_haemal smaller_than_haemal_spine, 119 height_of_neural_spines / even alternating, 120 dorsal_neural_spine / narrow_and_smooth laterally_broad_and_sculpted, 121 'neural_spine_shape_(lat)' / 'ant-post_sides_parallel_(rect)' 'non-parallel_(triangular)', 122 Neural_spine_lateral_suface / smooth crenulated, 123 haemal_arches / present absent, 124 haemal_arches / 'loosely_articulated_(intercentr' 'fused_to_mid-length_of_centrum', 125 haemal_arches / longer_than_or_equal_to_neurals shorter_than_neurals, 126 haemal_accessory_articulations / none one two, 127 haemal_arch_shape / 'non-parallel_(triangular)' 'parallel_(rectangular)', 128 tail / tapers deep_with_sudden_end, 129 trunk_arches / paired fused, 130 spinal_nerve_foramina / absent present, 131 extended_transverse_processes / absent present, 132 transverse_process / on_arch_pedicle on_centrum, 133 Atlas_Anterior_centrum / same_size_as_posterior laterally_expanded, 134 atlas_centrum / multipartite single_notochordal single_odontoid, 135 atlas_neural_arch / loosely_articulated sutured_to_centrum fused_to_centrum, 136 atlas_parapophyses / on_centrum on_transverse_process absent, 137 atlas_neural_arch / paired sutured_at_midline fused_at_midline, 138 atlas_acessory_articulation / absent zygosphene zygantra, 139 Proatlantes / present absent, 140 second_cervical_arch / expanded_to_more_posterior equal_to_more_posterior shorter_than_more_posterior, 141 atlas_ribs / one_pair two_pairs absent, 142 cervical_rib_distal_shape / spatulate pointed, 143 ribs_anterior_to_sacrum / short long, 144 Costal_Process_at_rib_head / absent present, 145 number_of_sacrals / 1 2 3, 146 sacral_parapophysis / on_centrum on_transverse_process, 147 number_pairs_of_caudal_ribs / 5_or_more 4 3 2_or_fewer, 148 interclavicle_posterior_stem / no_or_short long, 149 interclavicle_posterior_stem / wide narrow, 150 interclavicle / diamond_shaped 't-shaped', 151 interclavicle_anterior_plate / broad narrow, 152 'interclavicle_shape-diamond' / broad_diamond narrow_diamond, 153 interclavicle_anterior_fimbrati / present absent, 154 interclavicle_sculpture / present absent, 155 cleithrum / rounded_or_pointed_dorsally 't-_or_y-shaped', 156 proximal_clavicle_blades / widely_separate articulate_medially interdigitate, 157 supraglenoid_foramen / present absent, 158 number_coracoid_foramina / 0 1 2, 159 scapulocoracoid_occification / both scapula_only absent, 160 entepicondylar_foramen / present absent, 161 tortion_in_humerus / absent less_than_80_degrees more_than_80_degrees, 162 deltapectoral_crest / weak intermediate prominant, 163 Supinator_process / absent present, 164 humerus_length / 'long_(>4_trunk_centra)' short, 165 'humerus:radius' / '>=0.7' '0.5-0.7' '<0.5', 166 olecranon_process / unossified ossified, 167 carpals / fully_or_partially_ossified unossified, 168 'number_digits-manus' / 5_or_more 4 3, 169 pelvis / fused sutured poorly_ossified, 170 ilium / 2_dorsal_processes narrowly_bifurcate single_blade, 171 'pubo-ischiadic_plate_spans' / 6_vertebrae 5_vertebrae 4_vertebrae 3_vertebrae, 172 'internal_trochanter-articulatio' / disctinct continuous, 173 femoral_shaft / robust slender, 174 femur / long short, 175 distal_tibia / expanded not_expanded, 176 tarsals / ossified unossified, 177 number_of_distal_tarsals / 6 5_or_fewer, 178 '"astragulus"' / absent present, 179 'number_of_digits,_pes' / 5_or_more 4_or_less, 180 number_of_presacrals / '25-35' '<25' '>35', 181 Basal_Skull_Length / '>70mm' '50-70mm' '30-50mm' '<30mm', 182 'Skull:trunk' / '>=0.45' '0.30-0.45' '0.20-0.29' '<0.20' ;
MATRIX
Acanthostega 10000100000?0000000000000000000001000000000--000000000000000-0000--00000000000000000000000000000000000-0100000000000000000000000(0 1)00000000000000000000000000000000000000000001000000000
Proterogyrinus 0000000{0 1}001?0010000?00000000000000010000000--000000000010000-002000000000?00?10000???00000000000000?00-00{0 1 2}001000000000000000001?10000000000000?00000000010000200100?101011011000100001
Balanerpeton 0000001100100000001100000000000000000000000--100000000000000-0000??00000000000000000000011000000100000-0001-101000000000000000000000000?00002000000000000000??002200110112011000100100
Dendrerpeton 0000001100100000001000000000000000000000000--100000000000000-000?????0000000000000????0?11000000001110-00???1010000000000000001?1000000?00?0?000000000000000010022001101021?00????0100
Tuditanus 11-111110011001000000000000011000001?000000--110000?00011000-011??0??10???00000?0020000?000?01001002-0-21???001000112-00101----?10001220201101001021111-?101--202200100110001000010031
Asaphestera 11-1111100100010000100003000110000010000000--{0 1}10000001010000-01210001200100100?0?0???001010?00?0100????20????1100?112?0010??????1000122??011??00???1110-?0?102002100?1??20??10??????22
Hapsidoparion 11-0110100101--0000010001000100000010000100--120001000011000-01011001200110011010011010?010000110112-0-20???11000??10??0?0???????0001212001?01?0?????????????????????00?22??????????3?
Llistrofus 11-1110100100110100010001000100000010011100--11?001?000?1000-011?????2?010?????1?????????????0110?1??1010????1100?1?1?0010??????1000???????????0??????????????????0??00?????????????3?
Saxonerpeton 11-1110100100010100110001000110000010000000--020001000011000-0110?0?1201-100000-?0?????1010000110{0 1}1??1020????11000111-00101----?1000121?201100100?21111-1101??002000210112101000100031
Pantylus 11-1111100100010000001101100100000010110000--101000000222010-0101000011020000011101011?0000100100011(0 1)10202010000001010101000000010001220201110100?01111-100201002200210112011000110110
Cardiocephalus_sternbergi 11-1111100110010000001102100110000010(0 1)10000--121100010222110-1100000030010111112101001000000001?0012-0-202021110?????????0??????????????????????????????????????????????????????????3?
Cardiocephalus_peabodyi 11-1111100110010000011112100110000010(0 1)10000--121000?10222110-110000003????????????????????0??0111?1??0-20????1100?001?0010??????10001220?011000010????????0?0-1121012?0?2210100????232
Euryodus_primus 11-1111100110000000011211100110000010110000--??1000010222010-110000112001000001210????0?000000111112-11203--1?100?0?2?0010??????1000???????????0???1111-1??1??0(0 1)2101?10?12?0101?????2?
Euryodus_dalyae 11-1111100110010000011201100110000010010000--121000010222010-01000001200100000021000010?000000111112-0-203--11100?002?0010??????1000122000100??0?0???????????????????1??????????????2?
Pelodosotis 11-1111100110110000010003100100000010110100--12101-010012010-012100012?01?00??0210121100010?00{0 1}0111111020?0211000?011?1010??????1000121?1011001010?0111-11011-10220021??02?01000???213
Micraroter 11-11111001001100000000030001100000101(0 1)0100--121100010112010-01010011200100000020001010?00000010101??1020???1100000010101000001010001220001100002?????????0?0-1???0?????120110?????013
Rhynchonkos 11-1111100100010000001212100110000010010000--121000010012000-0101101031010101101100001100100001000011101010111100?002?0010??????1000122-201121001?3???????0????1220121011220101010?233
Eocaecilia 11--011-1---0000000121112100111---110111000--1201000000000010010010-03001000110110000??0010100---2-??10103--111000002?00-0?????01101122-20112100013???????????0122012102???011?01?1233
Microbrachis 11-1011101100010000100001000100001110000000--010000000(0 1)11000-010?00?0201-100000-10000001010000101001110000021000001110001000000010101212101100000020110-00000-102001100211311110?00232
Hyloplesion 11-0011100100010000000001000100001110001000--120000100011010-010100??(1 2)01-100000-001100??0100001?000??0-20???011000111?0010?????0(0 1)0101212201100000020??0?0?00??012001210212211000100032
Mazon_Creek ???????????????????????0?00??????????????????????????0???000-01????????????0?00??0???????0?????????????????????00011???0?0?????0101012??001100000?3???????0????02001100?22311101--0031
Batropetes 11-101110010???01001212130001000011120--000--12101-?100120011011110-03????10110-101000000?0?001??11??101????1110001120001000100010001220?01100000001110-110102002201210102301110110132
Carrolla 11-?0??100111--01000200130001000011?20--??0--12100?010022101101101010301-110111-0{0 1}00001001000??-?2???0?203--11??????????????????????12??????????????????????????????????????????????3?
Quasicaecilia 11----?100101--010?111213000110001?-20--?10--1210??????????????20?0-03????10??1?00101?10?10?????????????????????????????????????????????????????????????????????????????????????????3?
Odonterpeton 11----1100100010(0 1)001100{0 1}20001100011-100001---1200000000120{0 1}0-011???0?2101100000{1 2}102001010000001??01????2?11-11100?111?0010??????0000011?101110?0??????????0???2120011002????????????3?
Utaherpeton ????0??10011???0000?2000?000100001???0??0?0--12010??001?1000-01??????{1 2}???100?0???????????????00??10??0-21????110001120000000000?(0 1)0?0?????????0001?00-000(0 1)????-1022010111111?1001--0131
Stegotretus 11-11111001100{0 1}0000011101000110000010010000--111001010222010-010100002102001000110????000001001?001110-00?0(0 1)0?100?111?0010??????1000121????????0???1111-???011012200210?20001000????3?
Sparodus_ 11-1111?0?11001?0????1?12?00110000010010000--11?0????0222010-11??????3?01?01?0?1??????????0?0?0???02-1020?00?1100?111?0010??????1000?????011?000?0?1110-0?01??01?200110?101??00????121
Sauropleura_pectinata 1000010000110001000120000110100101010000000--11011-001001000-0(0 1)2??0??0001001011200????000?0100000100010003--1001101120011101000010000122221121000010-0010000???10001??1122?11101--?021
Sauropleura_scalaris 1000010000110001000120000110100101010000000--1101(0 1)0001012000-011??0?00001101111200????000?0100000100010003--1001001120001101010?10100122211121000010-0010000??010011000102311100?10021
Sauropleura_bairdi ???????0001????1?0012000?11??0???????????????11011-?0101?0?0-01?????????????????????????????????????????????10?11??????1?1???????1?0?????????????????????????????????????????1????????
Lepterpeton 1?????000011????00??2000?11?10????????????0--??01????????????????????0???????????????????????0???????100??????010?11?10?11010?001?1001??????2?000?3????????????????1??11????1001--01?1
Ptyonius 1010010100110010000120001100100101010000000--110000000012000-011??0?00001010011200????01100000001?1??1101???100201112100(0 1)101021010100222221121100020-0000000???10001001122311101--1111
Ctenerpeton 1??????????????????????????????????????????????????????????????????????????????????????????????????????????????201112100110102111010??????????100020-00??0????????????1102311101-?1???
Urocordylus 10??0?00001100???????000?100100101??????0?0--1100???010??000-01???0??0001?00?1?2?0????0000??000?0?0??1100???100201112100110111(0 1)110100122221?21000030-000?000??010201111?12310101--0122
Keraterpeton_galvani 11-001110010001000012000000?10000111001000101010000?00022000-010?11??20011000111??????0020??0100010111111???0001001120001101100010100122211121000030-000?012???10001011122?11101--0132
Batrachiderpeton 11-001110010001000011000000110000111001000110010100100012000-011?11?020010000111?1????002001{0 1}10001011111120(1 2)000100112000(0 1)10110001010112221122?000?10-000?012????????????2??????????1??
Diceratosaurus 11-001110010001000012000000110000111001000100010100?00????00-010?11??2???????????1????00001?000?11011102?2011001001120010101000010100122211121000030-000?012--210001011122?11101--01?1
Diplocaulus_magnicornis 11-00111000-001111011100000110001111001000111010000100012000-010011{0 1}03001010111101????00111110020010(0 1)0-20201000100112001010100001011112221122000013000001012??20000110112???1101--0101
Diplocaulus_primus 11-00111000-001111011000000110001111001000111010000?00012000-010?11?03001010111101????00111?100?1?1????2?????0010?112?010101?0??101111222??220?0????0000101????????1??1???????????????
Diploceraspis 11-0011-1---001111012000000010001111001000111010000100012000-010011003001110111101????0011101010110111020201000200112001010101001011122221122??0?1?0-0001012????????????????????????0?
Scincosaurus 11-111110010001000012000{1 3}0011000000120--000--010100000012000-01??11??301-110101-01????0001010?0???????????01?0010011210001011110100001222?1121000?20-000?002??002200100012201000?10133
Brachydectes 11---11100111--00001200-2000101---110111-00--120100000012000-01210000311101011111?110010010101100111110203--11000011100010000010001002120011210000311000100010011001(0 1)11122311100?00233
Adelogyrinus 11-1021-1---00000001100030000000111100000{0 1}0--0101???000?0000-0100001?2?1-10?001-00?????00??00000?00??100(0 1)???100000110?0010???????000020220112??0???0-000000???2?????????????????????2?
Oestocephalus 100-010100100110000121102000101---000010100--120100100010000-012000000001?10?101?0???00000010000001110-003--111100112-00001----011100122200121-1--0-------0------------------------223
Phlegethontia 11----1-1------1100120002100101-----21--010--120101-00022000-012000-02????10??1?002000000?01000??2-2-0-0?3--111100112-00001----011100{1 2}22200121-1--0-------0------------------------223
Greererpeton 100001000110000000012(0 1)0030001000010000(0 1)0000--000000000000000-000000?1000(0 1)000110(0 1)0000000000000000000100-001010010000000000000000?1010000?000021100000-010000111001101111102201001--0202
Seymouria_baylorensis 0000000100100000000000001000000000010000000--000000000012010-0000000000000000001001??010200000000000(0 1){0 1}-20002000000000000(0 1)0000010100000000011000010011000100102002210100001011100?00101
Limnoscelis 1010010100100010000000000100100001011000000--121000001022010-00010000111-101000100???000010000000101(0 1)0-0000201100000000100000000100000000010000010011000??0?0?002210101011011000110001
;
END;
BEGIN TREES;
Title 'Trees from "Anderson.txt"';
LINK Taxa = Taxa;
TRANSLATE
1 Acanthostega,
2 Proterogyrinus,
3 Balanerpeton,
4 Dendrerpeton,
5 Tuditanus,
6 Asaphestera,
7 Hapsidoparion,
8 Llistrofus,
9 Saxonerpeton,
10 Pantylus,
11 Cardiocephalus_sternbergi,
12 Cardiocephalus_peabodyi,
13 Euryodus_primus,
14 Euryodus_dalyae,
15 Pelodosotis,
16 Micraroter,
17 Rhynchonkos,
18 Eocaecilia,
19 Microbrachis,
20 Hyloplesion,
21 Mazon_Creek,
22 Batropetes,
23 Carrolla,
24 Quasicaecilia,
25 Odonterpeton,
26 Utaherpeton,
27 Stegotretus,
28 Sparodus_,
29 Sauropleura_pectinata,
30 Sauropleura_scalaris,
31 Sauropleura_bairdi,
32 Lepterpeton,
33 Ptyonius,
34 Ctenerpeton,
35 Urocordylus,
36 Keraterpeton_galvani,
37 Batrachiderpeton,
38 Diceratosaurus,
39 Diplocaulus_magnicornis,
40 Diplocaulus_primus,
41 Diploceraspis,
42 Scincosaurus,
43 Brachydectes,
44 Adelogyrinus,
45 Oestocephalus,
46 Phlegethontia,
47 Greererpeton,
48 Seymouria_baylorensis,
49 Limnoscelis;
TREE strict = (1,3,(5,6,((7,(((((10,17),11),12,13),14),15,16,((18,(22,(23,24))),((19,20),25)))),(8,9)),26));
TREE MajRule = (3,((5,(((7,10),(((((11,13),12),14),(17,(18,(22,23,24)))),(15,16))),((8,9),(((19,(21,25)),20),26)))),6),2);
TREE PAUP_1 = (2,((3,4),((((5,(8,9)),(((10,27),((((11,12),(13,14)),(17,(18,(22,(23,24))))),28)),(15,16))),(7,((19,(20,26)),25))),6)));
TREE UNTITLED = (1,(47,((3,4),(2,(48,(49,(26,(20,(((((5,6),((((10,(27,28)),(11,(12,(13,14)))),(17,(18,(22,(23,24))))),(15,16))),((7,8),9)),25),((19,21),((((((29,31),30),((33,34),35)),(((36,37),(38,((39,40),41))),(43,(45,46)))),42),44)))))))))));
END;
BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS;
TYPESET * UNTITLED = unord: 1 - 182;
END;
BEGIN MACCLADE;
Version 3.05;
LastModified -1267883522;
Singles 0100& / 0;
END;
BEGIN NOTES;
TEXT TAXON = 29 CHARACTER = 12 TEXT = ;
TEXT TAXON = 39 CHARACTER = 21 TEXT = cjeck;
TEXT TAXON = 40 CHARACTER = 21 TEXT = check;
TEXT CHARACTER = 43 TEXT = not_as_margin_of_otic_notch;
TEXT TAXON = 18 CHARACTER = 67 TEXT = ;
TEXT TAXON = 36 CHARACTER = 70 TEXT = 'measure-_anterior_vs._far';
TEXT TAXON = 37 CHARACTER = 70 TEXT = 'measure-_anterior_vs._far';
TEXT TAXON = 38 CHARACTER = 70 TEXT = 'measure-_anterior_vs._far';
TEXT TAXON = 18 CHARACTER = 82 TEXT = ;
TEXT TAXON = 48 CHARACTER = 87 TEXT = '=orbitosphenoid_of_White_1938_(Romer,_1956)';
TEXT CHARACTER = 91 TEXT = 'if_ex_fused_in_os_basiale,_if_pt_contacts_the_ex_area';
TEXT TAXON = 42 CHARACTER = 106 TEXT = not_0;
TEXT TAXON = 18 CHARACTER = 108 TEXT = 'is_second_row_of_equal_teeth,_but_pseudentary,_no_coronoid';
TEXT CHARACTER = 121 TEXT = 'triangular=non_parallel-sided__rect=parallel-sided';
TEXT CHARACTER = 131 TEXT = 'at_least_one_zygo''s_width_again_from_centrum';
TEXT TAXON = 17 CHARACTER = 146 TEXT = 'could_be_single-headed;_ask_Bob';
END;
BEGIN MESQUITECHARMODELS;
ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 182;
END;
Begin MESQUITE;
MESQUITESCRIPTVERSION 2;
TITLE AUTO;
tell ProjectCoordinator;
timeSaved 1329769325907;
getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
tell It;
setID 0 4823355698681895500;
endTell;
getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
tell It;
setID 0 1785977715491807191;
mqVersion 275;
checksumv 0 3 1235835370 null getNumChars 182 numChars 182 getNumTaxa 49 numTaxa 49 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 24951.0 sumSquares -9.684540638697515E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1;
mqVersion;
endTell;
getWindow;
tell It;
suppress;
setResourcesState false false 100;
setPopoutState 400;
setExplanationSize 0;
setAnnotationSize 0;
setFontIncAnnot 0;
setFontIncExp 0;
setSize 700 464;
setLocation 164 538;
setFont SanSerif;
setFontSize 10;
getToolPalette;
tell It;
endTell;
desuppress;
endTell;
getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
tell It;
showDataWindow #1785977715491807191 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
tell It;
getWindow;
tell It;
setExplanationSize 30;
setAnnotationSize 20;
setFontIncAnnot 0;
setFontIncExp 0;
setSize 600 397;
setLocation 164 538;
setFont SanSerif;
setFontSize 10;
getToolPalette;
tell It;
endTell;
setActive;
setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
colorCells #mesquite.charMatrices.NoColor.NoColor;
colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor;
colorText #mesquite.charMatrices.NoColor.NoColor;
setBackground White;
toggleShowNames on;
toggleShowTaxonNames on;
toggleTight off;
toggleThinRows off;
toggleShowChanges on;
toggleSeparateLines off;
toggleShowStates on;
toggleAutoWCharNames on;
toggleAutoTaxonNames off;
toggleShowDefaultCharNames off;
toggleConstrainCW on;
toggleBirdsEye off;
toggleShowPaleGrid off;
toggleShowPaleCellColors off;
togglePaleInapplicable on;
toggleShowBoldCellText off;
toggleAllowAutosize on;
toggleColorsPanel off;
toggleDiagonal on;
setDiagonalHeight 80;
toggleLinkedScrolling on;
toggleScrollLinkedTables off;
endTell;
showWindow;
getWindow;
tell It;
forceAutosize;
endTell;
getEmployee #mesquite.charMatrices.ColorByState.ColorByState;
tell It;
setStateLimit 9;
toggleUniformMaximum on;
endTell;
getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
tell It;
setColor Red;
removeColor off;
endTell;
getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
tell It;
showStrip off;
endTell;
getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
tell It;
togglePanel off;
endTell;
getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
tell It;
showStrip off;
endTell;
getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
tell It;
autotabOff;
endTell;
getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
tell It;
showStrip off;
endTell;
getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor;
tell It;
panelOpen true;
endTell;
endTell;
endTell;
getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
tell It;
showCharacters #1785977715491807191 #mesquite.lists.CharacterList.CharacterList;
tell It;
setData 0;
getWindow;
tell It;
newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder;
newAssistant #mesquite.lists.CharListInclusion.CharListInclusion;
newAssistant #mesquite.lists.CharListPartition.CharListPartition;
newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels;
setExplanationSize 30;
setAnnotationSize 20;
setFontIncAnnot 0;
setFontIncExp 0;
setSize 600 397;
setLocation 164 538;
setFont SanSerif;
setFontSize 10;
getToolPalette;
tell It;
endTell;
endTell;
showWindow;
getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel;
tell It;
togglePanel off;
endTell;
endTell;
endTell;
endTell;
end;
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