Skip to content

Instantly share code, notes, and snippets.

@barryrowlingson

barryrowlingson/install-numpy.txt

Created December 9, 2016 07:53
Show Gist options
  • Save barryrowlingson/ab1c4e2f53e5d54c825ad076bc9b8cf4 to your computer and use it in GitHub Desktop.
Save barryrowlingson/ab1c4e2f53e5d54c825ad076bc9b8cf4 to your computer and use it in GitHub Desktop.
Download ZIP
Raw
install-numpy.txt
docker run --rm rocker/ropensci uname -a > install_numpy.txt
Linux bfde0c78b98c 3.19.0-65-generic #73~14.04.1-Ubuntu SMP Wed Jun 29 21:05:22 UTC 2016 x86_64 GNU/Linux
docker run --rm rocker/ropensci pip install -v numpy >> install_numpy.txt
Downloading/unpacking numpy
Ignoring link https://pypi.python.org/packages/32/66/cb46f2b9af0f7e25af51b4ba72d7ebf27626add5b8faefd452eb438da2c3/numpy-1.11.2rc1.zip#md5=dc6351ae9b5b4fa7365d80a7c1d570f1 (from https://pypi.python.org/simple/numpy/), version 1.11.2rc1 is a pre-release (use --pre to allow).
Ignoring link https://pypi.python.org/packages/48/c2/7de8225df3863a0478f7a029e4f81749c58a71ff76f9e5fee6227bfee9e5/numpy-1.11.0rc2.zip#md5=a97d4a0fb32876f1e1857cef87cccc8a (from https://pypi.python.org/simple/numpy/), version 1.11.0rc2 is a pre-release (use --pre to allow).
Ignoring link https://pypi.python.org/packages/48/c6/05229df054c43f2415347fb4039f403ae043fd9e5519c2c2c535855a8da8/numpy-1.11.0rc2.tar.gz#md5=5cacb742522b42ae695ec4e30c21bc12 (from https://pypi.python.org/simple/numpy/), version 1.11.0rc2 is a pre-release (use --pre to allow).
Ignoring link https://pypi.python.org/packages/50/7d/bbca8b5917aa5c2967a776a4f66d66ce60cf145effec5fdfd049728e1956/numpy-1.11.0rc1.zip#md5=c54a633cf220e2abeb4304b9bead2560 (from https://pypi.python.org/simple/numpy/), version 1.11.0rc1 is a pre-release (use --pre to allow).
Ignoring link https://pypi.python.org/packages/5c/71/6b4d74a79bcc2d2ee64da1b519e340e06a43f8f12b23e21771e83328c253/numpy-1.12.0b1.tar.gz#md5=2dd8eebffdf392312267ed1857b644f9 (from https://pypi.python.org/simple/numpy/), version 1.12.0b1 is a pre-release (use --pre to allow).
Ignoring link https://pypi.python.org/packages/74/45/eac500b0f809adb1eee8f41aa445ac708f3f0043c1071c60c7b45679fa78/numpy-1.11.1rc1.zip#md5=bd7b6a5e561ac68a64e6c31d0c3b9b4e (from https://pypi.python.org/simple/numpy/), version 1.11.1rc1 is a pre-release (use --pre to allow).
Ignoring link https://pypi.python.org/packages/a6/55/a03f9ee5a7de869823bbdf56c4db7f294cff551ff2f40866a96bf945122d/numpy-1.11.0b3.tar.gz#md5=1c85878b20ddb8dd1f6e3aa0046719f7 (from https://pypi.python.org/simple/numpy/), version 1.11.0b3 is a pre-release (use --pre to allow).
Ignoring link https://pypi.python.org/packages/b7/e8/b0664eeea10e36fdf0ea7dc1846fc087f457805379be180863643463d501/numpy-1.11.0b3.zip#md5=843ff6c9a6e72d74fcd827761b8217a8 (from https://pypi.python.org/simple/numpy/), version 1.11.0b3 is a pre-release (use --pre to allow).
Ignoring link https://pypi.python.org/packages/c3/e3/9d6a5cd98cfde74094daf890763c1ee35bbbdd6980ecc86c81526bfec0d7/numpy-1.11.0rc1.tar.gz#md5=a9c9300114fd49dd3b6395e8343f88ee (from https://pypi.python.org/simple/numpy/), version 1.11.0rc1 is a pre-release (use --pre to allow).
Ignoring link https://pypi.python.org/packages/da/04/74fa602812c0671ab17b6077bcb8d074b5bb9259a946698465696fb6f784/numpy-1.11.1rc1.tar.gz#md5=2e0945bc6893ba9a8707a83d137a20a8 (from https://pypi.python.org/simple/numpy/), version 1.11.1rc1 is a pre-release (use --pre to allow).
Ignoring link https://pypi.python.org/packages/e1/22/e21b5080e303898fd97c6ee2a78d21be4844b1258a57a5d5cb370b0275c0/numpy-1.12.0b1.zip#md5=221c612e516af83d9a0d5ca4703b81b9 (from https://pypi.python.org/simple/numpy/), version 1.12.0b1 is a pre-release (use --pre to allow).
Ignoring link https://pypi.python.org/packages/f8/20/76beca42e1b4ff4d2f834ab536ed5c654ffe444bec01b1392a9519c61add/numpy-1.11.2rc1.tar.gz#md5=2a70717c1d42e973e751ce85c20e4dad (from https://pypi.python.org/simple/numpy/), version 1.11.2rc1 is a pre-release (use --pre to allow).
Using version 1.11.2 (newest of versions: 1.11.2, 1.11.2, 1.11.1, 1.11.1, 1.11.0, 1.11.0, 1.10.4, 1.10.4, 1.10.2, 1.10.2, 1.10.1, 1.10.1, 1.10.0.post2, 1.10.0.post2, 1.9.3, 1.9.3, 1.9.2, 1.9.2, 1.9.1, 1.9.1, 1.9.0, 1.9.0, 1.8.2, 1.8.2, 1.8.1, 1.8.1, 1.8.0, 1.8.0, 1.7.2, 1.7.2, 1.7.1, 1.7.1, 1.7.0, 1.7.0, 1.6.2, 1.6.2, 1.6.1, 1.6.1, 1.6.0, 1.6.0, 1.5.1, 1.5.0, 1.4.1, 1.3.0)
Downloading from URL https://pypi.python.org/packages/16/f5/b432f028134dd30cfbf6f21b8264a9938e5e0f75204e72453af08d67eb0b/numpy-1.11.2.tar.gz#md5=03bd7927c314c43780271bf1ab795ebc (from https://pypi.python.org/simple/numpy/)
Running setup.py (path:/tmp/pip-build-pvoNyb/numpy/setup.py) egg_info for package numpy
Running from numpy source directory.
running egg_info
creating pip-egg-info/numpy.egg-info
writing pip-egg-info/numpy.egg-info/PKG-INFO
writing top-level names to pip-egg-info/numpy.egg-info/top_level.txt
writing dependency_links to pip-egg-info/numpy.egg-info/dependency_links.txt
writing manifest file 'pip-egg-info/numpy.egg-info/SOURCES.txt'
warning: manifest_maker: standard file '-c' not found
reading manifest file 'pip-egg-info/numpy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '*.pyd' found anywhere in distribution
writing manifest file 'pip-egg-info/numpy.egg-info/SOURCES.txt'
Installing collected packages: numpy
Running setup.py install for numpy
Running from numpy source directory.
Note: if you need reliable uninstall behavior, then install
with pip instead of using `setup.py install`:
- `pip install .` (from a git repo or downloaded source
release)
- `pip install numpy` (last Numpy release on PyPi)
blas_opt_info:
blas_mkl_info:
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_info:
libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas not found in ['/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_info:
libraries satlas not found in ['/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_info:
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
compile options: '-c'
x86_64-linux-gnu-gcc: _configtest.c
x86_64-linux-gnu-gcc -pthread _configtest.o -L/usr/lib/atlas-base -lf77blas -lcblas -latlas -o _configtest
ATLAS version 3.10.2 built by pbuilder on Thu Jan 29 20:04:04 UTC 2015:
UNAME : Linux rama 3.16.0-4-amd64 #1 SMP Debian 3.16.7-ckt2-1 (2014-12-08) x86_64 GNU/Linux
INSTFLG : -1 0 -a 1 -l 1
ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_x86SSE2 -DATL_CPUMHZ=4328 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664
F2CDEFS : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
CACHEEDGE: 1048576
F77 : /usr/bin/gfortran, version GNU Fortran (Debian 4.9.2-10) 4.9.2
F77FLAGS : -fomit-frame-pointer -mfpmath=sse -O2 -msse2 -fPIC -m64
SMC : /usr/bin/c99-gcc, version gcc (Debian 4.9.2-10) 4.9.2
SMCFLAGS : -fomit-frame-pointer -mfpmath=sse -O2 -msse2 -fPIC -m64
SKC : /usr/bin/c99-gcc, version gcc (Debian 4.9.2-10) 4.9.2
SKCFLAGS : -fomit-frame-pointer -mfpmath=sse -O2 -msse2 -fPIC -m64
success!
removing: _configtest.c _configtest.o _configtest
libraries f77blas not found in []
Runtime library f77blas was not found. Ignoring
libraries cblas not found in []
Runtime library cblas was not found. Ignoring
FOUND:
libraries = ['f77blas', 'cblas', 'atlas', 'f77blas', 'cblas']
library_dirs = ['/usr/lib/atlas-base']
language = c
define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"3.10.2\\""')]
include_dirs = ['/usr/include/atlas']
FOUND:
libraries = ['f77blas', 'cblas', 'atlas', 'f77blas', 'cblas']
library_dirs = ['/usr/lib/atlas-base']
language = c
define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"3.10.2\\""')]
include_dirs = ['/usr/include/atlas']
/bin/sh: 1: svnversion: not found
/bin/sh: 1: svnversion: not found
non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2
lapack_opt_info:
openblas_lapack_info:
libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
lapack_mkl_info:
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas,tatlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries tatlas,tatlas not found in /usr/lib/atlas-base
libraries tatlas,tatlas not found in /usr/lib
libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
libraries satlas,satlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries satlas,satlas not found in /usr/lib/atlas-base
libraries satlas,satlas not found in /usr/lib
libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/atlas-base
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
<class 'numpy.distutils.system_info.atlas_info'>
libraries f77blas not found in []
Runtime library f77blas was not found. Ignoring
libraries cblas not found in []
Runtime library cblas was not found. Ignoring
FOUND:
libraries = ['lapack', 'f77blas', 'cblas', 'atlas', 'f77blas', 'cblas']
library_dirs = ['/usr/lib/atlas-base/atlas', '/usr/lib/atlas-base']
language = f77
define_macros = [('ATLAS_INFO', '"\\"3.10.2\\""')]
include_dirs = ['/usr/include/atlas']
FOUND:
libraries = ['lapack', 'f77blas', 'cblas', 'atlas', 'f77blas', 'cblas']
library_dirs = ['/usr/lib/atlas-base/atlas', '/usr/lib/atlas-base']
language = f77
define_macros = [('ATLAS_INFO', '"\\"3.10.2\\""')]
include_dirs = ['/usr/include/atlas']
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'define_macros'
warnings.warn(msg)
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
creating build
creating build/src.linux-x86_64-2.7
creating build/src.linux-x86_64-2.7/numpy
creating build/src.linux-x86_64-2.7/numpy/distutils
building library "npymath" sources
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using config
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -c'
x86_64-linux-gnu-gcc: _configtest.c
x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -c'
x86_64-linux-gnu-gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’
int exp (void);
^
x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest
_configtest.o: In function `main':
/tmp/pip-build-pvoNyb/numpy/_configtest.c:6: undefined reference to `exp'
collect2: error: ld returned 1 exit status
_configtest.o: In function `main':
/tmp/pip-build-pvoNyb/numpy/_configtest.c:6: undefined reference to `exp'
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -c'
x86_64-linux-gnu-gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’
int exp (void);
^
x86_64-linux-gnu-gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
creating build/src.linux-x86_64-2.7/numpy/core
creating build/src.linux-x86_64-2.7/numpy/core/src
creating build/src.linux-x86_64-2.7/numpy/core/src/npymath
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npymath/npy_math.c
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npymath/ieee754.c
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npymath/npy_math_complex.c
building library "npysort" sources
creating build/src.linux-x86_64-2.7/numpy/core/src/npysort
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npysort/quicksort.c
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npysort/mergesort.c
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npysort/heapsort.c
creating build/src.linux-x86_64-2.7/numpy/core/src/private
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/private/npy_partition.h
adding 'build/src.linux-x86_64-2.7/numpy/core/src/private' to include_dirs.
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npysort/selection.c
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/private/npy_binsearch.h
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npysort/binsearch.c
None - nothing done with h_files = ['build/src.linux-x86_64-2.7/numpy/core/src/private/npy_partition.h', 'build/src.linux-x86_64-2.7/numpy/core/src/private/npy_binsearch.h']
building extension "numpy.core._dummy" sources
Generating build/src.linux-x86_64-2.7/numpy/core/include/numpy/config.h
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -c'
x86_64-linux-gnu-gcc: _configtest.c
_configtest.c:1:20: fatal error: Python.h: No such file or directory
#include <Python.h>
^
compilation terminated.
_configtest.c:1:20: fatal error: Python.h: No such file or directory
#include <Python.h>
^
compilation terminated.
failure.
removing: _configtest.c _configtest.o
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-pvoNyb/numpy/setup.py", line 386, in <module>
setup_package()
File "/tmp/pip-build-pvoNyb/numpy/setup.py", line 378, in setup_package
setup(**metadata)
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/core.py", line 169, in setup
return old_setup(**new_attr)
File "/usr/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/install.py", line 62, in run
r = self.setuptools_run()
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/install.py", line 36, in setuptools_run
return distutils_install.run(self)
File "/usr/lib/python2.7/distutils/command/install.py", line 601, in run
self.run_command('build')
File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/build.py", line 47, in run
old_build.run(self)
File "/usr/lib/python2.7/distutils/command/build.py", line 128, in run
self.run_command(cmd_name)
File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/build_src.py", line 147, in run
self.build_sources()
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/build_src.py", line 164, in build_sources
self.build_extension_sources(ext)
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/build_src.py", line 323, in build_extension_sources
sources = self.generate_sources(sources, ext)
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/build_src.py", line 376, in generate_sources
source = func(extension, build_dir)
File "numpy/core/setup.py", line 407, in generate_config_h
moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir)
File "numpy/core/setup.py", line 40, in check_types
out = check_types(*a, **kw)
File "numpy/core/setup.py", line 269, in check_types
"Cannot compile 'Python.h'. Perhaps you need to "
SystemError: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel.
Complete output from command /usr/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip-build-pvoNyb/numpy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-VLt9vB-record/install-record.txt --single-version-externally-managed --compile:
Running from numpy source directory.
Note: if you need reliable uninstall behavior, then install
with pip instead of using `setup.py install`:
- `pip install .` (from a git repo or downloaded source
release)
- `pip install numpy` (last Numpy release on PyPi)
blas_opt_info:
blas_mkl_info:
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_info:
libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas not found in ['/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_info:
libraries satlas not found in ['/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_info:
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
compile options: '-c'
x86_64-linux-gnu-gcc: _configtest.c
x86_64-linux-gnu-gcc -pthread _configtest.o -L/usr/lib/atlas-base -lf77blas -lcblas -latlas -o _configtest
ATLAS version 3.10.2 built by pbuilder on Thu Jan 29 20:04:04 UTC 2015:
UNAME : Linux rama 3.16.0-4-amd64 #1 SMP Debian 3.16.7-ckt2-1 (2014-12-08) x86_64 GNU/Linux
INSTFLG : -1 0 -a 1 -l 1
ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_x86SSE2 -DATL_CPUMHZ=4328 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664
F2CDEFS : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
CACHEEDGE: 1048576
F77 : /usr/bin/gfortran, version GNU Fortran (Debian 4.9.2-10) 4.9.2
F77FLAGS : -fomit-frame-pointer -mfpmath=sse -O2 -msse2 -fPIC -m64
SMC : /usr/bin/c99-gcc, version gcc (Debian 4.9.2-10) 4.9.2
SMCFLAGS : -fomit-frame-pointer -mfpmath=sse -O2 -msse2 -fPIC -m64
SKC : /usr/bin/c99-gcc, version gcc (Debian 4.9.2-10) 4.9.2
SKCFLAGS : -fomit-frame-pointer -mfpmath=sse -O2 -msse2 -fPIC -m64
success!
removing: _configtest.c _configtest.o _configtest
libraries f77blas not found in []
Runtime library f77blas was not found. Ignoring
libraries cblas not found in []
Runtime library cblas was not found. Ignoring
FOUND:
libraries = ['f77blas', 'cblas', 'atlas', 'f77blas', 'cblas']
library_dirs = ['/usr/lib/atlas-base']
language = c
define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"3.10.2\\""')]
include_dirs = ['/usr/include/atlas']
FOUND:
libraries = ['f77blas', 'cblas', 'atlas', 'f77blas', 'cblas']
library_dirs = ['/usr/lib/atlas-base']
language = c
define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"3.10.2\\""')]
include_dirs = ['/usr/include/atlas']
/bin/sh: 1: svnversion: not found
/bin/sh: 1: svnversion: not found
non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2
lapack_opt_info:
openblas_lapack_info:
libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
lapack_mkl_info:
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas,tatlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries tatlas,tatlas not found in /usr/lib/atlas-base
libraries tatlas,tatlas not found in /usr/lib
libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
libraries satlas,satlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries satlas,satlas not found in /usr/lib/atlas-base
libraries satlas,satlas not found in /usr/lib
libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/atlas-base
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
<class 'numpy.distutils.system_info.atlas_info'>
libraries f77blas not found in []
Runtime library f77blas was not found. Ignoring
libraries cblas not found in []
Runtime library cblas was not found. Ignoring
FOUND:
libraries = ['lapack', 'f77blas', 'cblas', 'atlas', 'f77blas', 'cblas']
library_dirs = ['/usr/lib/atlas-base/atlas', '/usr/lib/atlas-base']
language = f77
define_macros = [('ATLAS_INFO', '"\\"3.10.2\\""')]
include_dirs = ['/usr/include/atlas']
FOUND:
libraries = ['lapack', 'f77blas', 'cblas', 'atlas', 'f77blas', 'cblas']
library_dirs = ['/usr/lib/atlas-base/atlas', '/usr/lib/atlas-base']
language = f77
define_macros = [('ATLAS_INFO', '"\\"3.10.2\\""')]
include_dirs = ['/usr/include/atlas']
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'define_macros'
warnings.warn(msg)
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
creating build
creating build/src.linux-x86_64-2.7
creating build/src.linux-x86_64-2.7/numpy
creating build/src.linux-x86_64-2.7/numpy/distutils
building library "npymath" sources
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using config
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -c'
x86_64-linux-gnu-gcc: _configtest.c
x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -c'
x86_64-linux-gnu-gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’
int exp (void);
^
x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest
_configtest.o: In function `main':
/tmp/pip-build-pvoNyb/numpy/_configtest.c:6: undefined reference to `exp'
collect2: error: ld returned 1 exit status
_configtest.o: In function `main':
/tmp/pip-build-pvoNyb/numpy/_configtest.c:6: undefined reference to `exp'
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -c'
x86_64-linux-gnu-gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’
int exp (void);
^
x86_64-linux-gnu-gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
creating build/src.linux-x86_64-2.7/numpy/core
creating build/src.linux-x86_64-2.7/numpy/core/src
creating build/src.linux-x86_64-2.7/numpy/core/src/npymath
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npymath/npy_math.c
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npymath/ieee754.c
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npymath/npy_math_complex.c
building library "npysort" sources
creating build/src.linux-x86_64-2.7/numpy/core/src/npysort
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npysort/quicksort.c
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npysort/mergesort.c
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npysort/heapsort.c
creating build/src.linux-x86_64-2.7/numpy/core/src/private
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/private/npy_partition.h
adding 'build/src.linux-x86_64-2.7/numpy/core/src/private' to include_dirs.
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npysort/selection.c
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/private/npy_binsearch.h
conv_template:> build/src.linux-x86_64-2.7/numpy/core/src/npysort/binsearch.c
None - nothing done with h_files = ['build/src.linux-x86_64-2.7/numpy/core/src/private/npy_partition.h', 'build/src.linux-x86_64-2.7/numpy/core/src/private/npy_binsearch.h']
building extension "numpy.core._dummy" sources
Generating build/src.linux-x86_64-2.7/numpy/core/include/numpy/config.h
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -c'
x86_64-linux-gnu-gcc: _configtest.c
_configtest.c:1:20: fatal error: Python.h: No such file or directory
#include <Python.h>
^
compilation terminated.
_configtest.c:1:20: fatal error: Python.h: No such file or directory
#include <Python.h>
^
compilation terminated.
failure.
removing: _configtest.c _configtest.o
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-pvoNyb/numpy/setup.py", line 386, in <module>
setup_package()
File "/tmp/pip-build-pvoNyb/numpy/setup.py", line 378, in setup_package
setup(**metadata)
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/core.py", line 169, in setup
return old_setup(**new_attr)
File "/usr/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/install.py", line 62, in run
r = self.setuptools_run()
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/install.py", line 36, in setuptools_run
return distutils_install.run(self)
File "/usr/lib/python2.7/distutils/command/install.py", line 601, in run
self.run_command('build')
File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/build.py", line 47, in run
old_build.run(self)
File "/usr/lib/python2.7/distutils/command/build.py", line 128, in run
self.run_command(cmd_name)
File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/build_src.py", line 147, in run
self.build_sources()
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/build_src.py", line 164, in build_sources
self.build_extension_sources(ext)
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/build_src.py", line 323, in build_extension_sources
sources = self.generate_sources(sources, ext)
File "/tmp/pip-build-pvoNyb/numpy/numpy/distutils/command/build_src.py", line 376, in generate_sources
source = func(extension, build_dir)
File "numpy/core/setup.py", line 407, in generate_config_h
moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir)
File "numpy/core/setup.py", line 40, in check_types
out = check_types(*a, **kw)
File "numpy/core/setup.py", line 269, in check_types
"Cannot compile 'Python.h'. Perhaps you need to "
SystemError: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel.
----------------------------------------
Cleaning up...
Command /usr/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip-build-pvoNyb/numpy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-VLt9vB-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip-build-pvoNyb/numpy
Exception information:
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/pip/basecommand.py", line 122, in main
status = self.run(options, args)
File "/usr/lib/python2.7/dist-packages/pip/commands/install.py", line 295, in run
requirement_set.install(install_options, global_options, root=options.root_path)
File "/usr/lib/python2.7/dist-packages/pip/req.py", line 1436, in install
requirement.install(install_options, global_options, *args, **kwargs)
File "/usr/lib/python2.7/dist-packages/pip/req.py", line 707, in install
cwd=self.source_dir, filter_stdout=self._filter_install, show_stdout=False)
File "/usr/lib/python2.7/dist-packages/pip/util.py", line 716, in call_subprocess
% (command_desc, proc.returncode, cwd))
InstallationError: Command /usr/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip-build-pvoNyb/numpy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-VLt9vB-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip-build-pvoNyb/numpy
Traceback (most recent call last):
File "/usr/bin/pip", line 9, in <module>
load_entry_point('pip==1.5.6', 'console_scripts', 'pip')()
File "/usr/lib/python2.7/dist-packages/pip/__init__.py", line 248, in main
return command.main(cmd_args)
File "/usr/lib/python2.7/dist-packages/pip/basecommand.py", line 161, in main
text = '\n'.join(complete_log)
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 72: ordinal not in range(128)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment