Created
May 2, 2024 06:04
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/208761 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2862.
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1714626158:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1714626158:resolve_secrets [0Ksection_start:1714626158:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3913017539, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 208761, build ref , job ID 1265063 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1265063_PROD_P2160_CP2_C4 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2158815 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1265063_PROD_P2160_CP2_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --ntasks=2 --jobid=2158815 --cpus-per-task=8 --mem=160G | |
| section_end:1714626159:prepare_executor [0Ksection_start:1714626159:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i6n16 via bbpv1.epfl.ch... | |
| section_end:1714626163:prepare_script [0Ksection_start:1714626163:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1714626164:get_sources [0Ksection_start:1714626164:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=89939 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1714626170:restore_cache [0Ksection_start:1714626170:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1265061)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=90131 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1265061 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1714626171:download_artifacts [0Ksection_start:1714626171:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265063/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265063/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265063/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265063/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265063/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265063/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761/J1265063_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2158815/ccache | |
| Config file: /nvme/bbpcihpcproj12/2158815/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu May 2 07:02:56 2024 | |
| Local storage: | |
| Cache size (GB): 0.47 / 0.51 (91.44%) | |
| Files: 13096 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf | |
| Concretized | |
| -------------------------------- | |
| - 2axlnbo neuron@git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - v534axo ^libsonata-report@git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] tuewa3t ^nmodl@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] l76xnwr ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mfss4bt ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] qbhlkgj ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] f6wairf ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] qe4yfyl ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| ==> Installing libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop-v534axoyfq2ctrtels7v2u2s37bmj5uq [42/49] | |
| ==> No binary for libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop-v534axoyfq2ctrtels7v2u2s37bmj5uq found: installing from source | |
| ==> No patches needed for libsonata-report | |
| ==> libsonata-report: Executing phase: 'cmake' | |
| ==> libsonata-report: Executing phase: 'build' | |
| ==> libsonata-report: Executing phase: 'install' | |
| ==> libsonata-report: Successfully installed libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop-v534axoyfq2ctrtels7v2u2s37bmj5uq | |
| Stage: 2.36s. Cmake: 5.13s. Build: 1.65s. Install: 0.11s. Post-install: 0.10s. Total: 9.51s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e_develop-v534ax | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-qe4yfy | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124_develop-tuewa3 | |
| ==> Installing neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop-2axlnbootcf7duaejyuwj65gqpo4kyvn [49/49] | |
| ==> No binary for neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop-2axlnbootcf7duaejyuwj65gqpo4kyvn found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop-2axlnbootcf7duaejyuwj65gqpo4kyvn | |
| Stage: 19.43s. Cmake: 1m 7.51s. Build: 16m 24.44s. Install: 33.61s. Post-install: 0.61s. Total: 18m 26.29s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_oneapi-2023.2.0-skylake/neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b_develop-2axlnb | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be 2axlnbootcf7duaejyuwj65gqpo4kyvn | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2158815/ccache | |
| Config file: /nvme/bbpcihpcproj12/2158815/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu May 2 07:24:19 2024 | |
| Cacheable calls: 1002 / 1144 (87.59%) | |
| Hits: 973 / 1002 (97.11%) | |
| Direct: 537 / 973 (55.19%) | |
| Preprocessed: 436 / 973 (44.81%) | |
| Misses: 29 / 1002 ( 2.89%) | |
| Uncacheable calls: 142 / 1144 (12.41%) | |
| Autoconf compile/link: 5 / 142 ( 3.52%) | |
| Called for linking: 111 / 142 (78.17%) | |
| Called for preprocessing: 1 / 142 ( 0.70%) | |
| Compilation failed: 2 / 142 ( 1.41%) | |
| No input file: 23 / 142 (16.20%) | |
| Successful lookups: | |
| Direct: 537 / 1004 (53.49%) | |
| Preprocessed: 436 / 467 (93.36%) | |
| Local storage: | |
| Cache size (GB): 0.47 / 0.51 (92.71%) | |
| Files: 13341 | |
| Hits: 973 / 1004 (96.91%) | |
| Misses: 31 / 1004 ( 3.09%) | |
| Reads: 2008 | |
| Writes: 419 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1714627460:step_script [0Ksection_start:1714627460:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=128506 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1714627483:archive_cache [0Ksection_start:1714627483:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=128650 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1265063 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=128690 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1265063 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=128734 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1265063 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1714627485:upload_artifacts_on_success [0Ksection_start:1714627485:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1714627485:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1714626159:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1714626159:resolve_secrets [0Ksection_start:1714626159:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2227037120, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 208761, build ref , job ID 1265066 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1265066_PROD_P2160_CP20_C25 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2158817 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1265066_PROD_P2160_CP20_C25 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --ntasks=2 --jobid=2158817 --cpus-per-task=8 --mem=160G | |
| section_end:1714626160:prepare_executor [0Ksection_start:1714626160:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n29 via bbpv1.epfl.ch... | |
| section_end:1714626162:prepare_script [0Ksection_start:1714626162:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1714626163:get_sources [0Ksection_start:1714626163:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=30227 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1714626169:restore_cache [0Ksection_start:1714626169:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1265061)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=30715 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1265061 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1714626170:download_artifacts [0Ksection_start:1714626170:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265066/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265066/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265066/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265066/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265066/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265066/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761/J1265066_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2158817/ccache | |
| Config file: /nvme/bbpcihpcproj12/2158817/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu May 2 07:02:56 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (89.58%) | |
| Files: 13461 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf | |
| Concretized | |
| -------------------------------- | |
| - pqdm6n2 neuron@git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - 2vmdhyp ^libsonata-report@git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] tuewa3t ^nmodl@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] l76xnwr ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mfss4bt ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] qbhlkgj ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] f6wairf ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] qe4yfyl ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| ==> Installing libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop-2vmdhypk76x2cdexvvr6echq23uot5ic [38/50] | |
| ==> No binary for libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop-2vmdhypk76x2cdexvvr6echq23uot5ic found: installing from source | |
| ==> No patches needed for libsonata-report | |
| ==> libsonata-report: Executing phase: 'cmake' | |
| ==> libsonata-report: Executing phase: 'build' | |
| ==> libsonata-report: Executing phase: 'install' | |
| ==> libsonata-report: Successfully installed libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop-2vmdhypk76x2cdexvvr6echq23uot5ic | |
| Stage: 1.28s. Cmake: 4.43s. Build: 1.44s. Install: 0.10s. Post-install: 0.10s. Total: 7.88s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_nvhpc-23.1-skylake/libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e_develop-2vmdhy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-qe4yfy | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124_develop-tuewa3 | |
| ==> Installing neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop-pqdm6n2kufagtcocoit5kpgfpg255jdz [50/50] | |
| ==> No binary for neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop-pqdm6n2kufagtcocoit5kpgfpg255jdz found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop-pqdm6n2kufagtcocoit5kpgfpg255jdz | |
| Stage: 18.40s. Cmake: 1m 17.42s. Build: 31m 2.07s. Install: 38.98s. Post-install: 3.28s. Total: 33m 21.47s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_nvhpc-23.1-skylake/neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b_develop-pqdm6n | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be pqdm6n2kufagtcocoit5kpgfpg255jdz | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2158817/ccache | |
| Config file: /nvme/bbpcihpcproj12/2158817/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu May 2 07:39:40 2024 | |
| Cacheable calls: 998 / 1118 (89.27%) | |
| Hits: 969 / 998 (97.09%) | |
| Direct: 540 / 969 (55.73%) | |
| Preprocessed: 429 / 969 (44.27%) | |
| Misses: 29 / 998 ( 2.91%) | |
| Uncacheable calls: 120 / 1118 (10.73%) | |
| Autoconf compile/link: 5 / 120 ( 4.17%) | |
| Called for linking: 94 / 120 (78.33%) | |
| Called for preprocessing: 2 / 120 ( 1.67%) | |
| Compilation failed: 2 / 120 ( 1.67%) | |
| No input file: 16 / 120 (13.33%) | |
| Preprocessing failed: 1 / 120 ( 0.83%) | |
| Successful lookups: | |
| Direct: 540 / 1001 (53.95%) | |
| Preprocessed: 429 / 460 (93.26%) | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (89.41%) | |
| Files: 13526 | |
| Cleanups: 2 | |
| Hits: 969 / 1000 (96.90%) | |
| Misses: 31 / 1000 ( 3.10%) | |
| Reads: 2001 | |
| Writes: 412 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1714628382:step_script [0Ksection_start:1714628382:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=80105 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1714628404:archive_cache [0Ksection_start:1714628404:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=80358 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1265066 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=80394 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1265066 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=80431 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1265066 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1714628405:upload_artifacts_on_success [0Ksection_start:1714628405:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1714628406:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1714626160:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1714626160:resolve_secrets [0Ksection_start:1714626160:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3385760880, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 208761, build ref , job ID 1265068 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1265068_PROD_P2160_CP22_C27 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2158819 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1265068_PROD_P2160_CP22_C27 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --ntasks=2 --jobid=2158819 --cpus-per-task=8 --mem=160G | |
| section_end:1714626163:prepare_executor [0Ksection_start:1714626163:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n30 via bbpv1.epfl.ch... | |
| section_end:1714626166:prepare_script [0Ksection_start:1714626166:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1714626167:get_sources [0Ksection_start:1714626167:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=82314 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1714626173:restore_cache [0Ksection_start:1714626173:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1265061)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=82519 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1265061 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1714626174:download_artifacts [0Ksection_start:1714626174:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265068/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265068/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265068/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265068/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265068/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265068/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761/J1265068_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2158819/ccache | |
| Config file: /nvme/bbpcihpcproj12/2158819/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu May 2 07:03:01 2024 | |
| Local storage: | |
| Cache size (GB): 0.47 / 0.51 (91.69%) | |
| Files: 13571 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf | |
| - ^caliper+cuda cuda_arch=70 | |
| Concretized | |
| -------------------------------- | |
| - vfccujv neuron@git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] wtaqeht ^caliper@2.9.1%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~variorum build_system=cmake build_type=Release cuda_arch=70 generator=make patches=7b1ffa4 arch=linux-rhel7-skylake | |
| [^] inlzf5z ^adiak@0.2.2%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake | |
| [^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - 2vmdhyp ^libsonata-report@git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] tuewa3t ^nmodl@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] l76xnwr ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mfss4bt ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] qbhlkgj ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] f6wairf ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] qe4yfyl ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.2.2-inlzf5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-qe4yfy | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124_develop-tuewa3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/caliper-2.9.1-wtaqeh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_nvhpc-23.1-skylake/libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e_develop-2vmdhy | |
| ==> Installing neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop-vfccujvslm7tbgvblxmprcrgbjj3poqk [55/55] | |
| ==> No binary for neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop-vfccujvslm7tbgvblxmprcrgbjj3poqk found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop-vfccujvslm7tbgvblxmprcrgbjj3poqk | |
| Stage: 17.28s. Cmake: 1m 22.25s. Build: 34m 16.76s. Install: 40.54s. Post-install: 5.65s. Total: 36m 46.02s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_nvhpc-23.1-skylake/neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b_develop-vfccuj | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be vfccujvslm7tbgvblxmprcrgbjj3poqk | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2158819/ccache | |
| Config file: /nvme/bbpcihpcproj12/2158819/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu May 2 07:43:03 2024 | |
| Cacheable calls: 984 / 1087 (90.52%) | |
| Hits: 951 / 984 (96.65%) | |
| Direct: 516 / 951 (54.26%) | |
| Preprocessed: 435 / 951 (45.74%) | |
| Misses: 33 / 984 ( 3.35%) | |
| Uncacheable calls: 103 / 1087 ( 9.48%) | |
| Autoconf compile/link: 5 / 103 ( 4.85%) | |
| Called for linking: 85 / 103 (82.52%) | |
| Called for preprocessing: 2 / 103 ( 1.94%) | |
| Compilation failed: 2 / 103 ( 1.94%) | |
| No input file: 8 / 103 ( 7.77%) | |
| Preprocessing failed: 1 / 103 ( 0.97%) | |
| Successful lookups: | |
| Direct: 516 / 983 (52.49%) | |
| Preprocessed: 435 / 466 (93.35%) | |
| Local storage: | |
| Cache size (GB): 0.44 / 0.51 (86.52%) | |
| Files: 12872 | |
| Cleanups: 5 | |
| Hits: 951 / 982 (96.84%) | |
| Misses: 31 / 982 ( 3.16%) | |
| Reads: 1965 | |
| Writes: 418 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1714628586:step_script [0Ksection_start:1714628586:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=130836 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1714628607:archive_cache [0Ksection_start:1714628607:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=131054 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1265068 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=131103 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1265068 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=131145 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1265068 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1714628609:upload_artifacts_on_success [0Ksection_start:1714628609:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1714628610:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1714626160:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1714626160:resolve_secrets [0Ksection_start:1714626160:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor4170542890, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 208761, build ref , job ID 1265071 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1265071_PROD_P2160_CP23_C28 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2158820 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1265071_PROD_P2160_CP23_C28 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --ntasks=2 --jobid=2158820 --cpus-per-task=8 --mem=160G | |
| section_end:1714626163:prepare_executor [0Ksection_start:1714626163:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n30 via bbpv1.epfl.ch... | |
| section_end:1714626166:prepare_script [0Ksection_start:1714626166:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1714626167:get_sources [0Ksection_start:1714626167:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=82241 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1714626173:restore_cache [0Ksection_start:1714626173:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1265061)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=82443 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1265061 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1714626174:download_artifacts [0Ksection_start:1714626174:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265071/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265071/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265071/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265071/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265071/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265071/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761/J1265071_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2158820/ccache | |
| Config file: /nvme/bbpcihpcproj12/2158820/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu May 2 07:03:01 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (89.90%) | |
| Files: 13604 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf | |
| - ^caliper+cuda cuda_arch=70 | |
| Concretized | |
| -------------------------------- | |
| - cwkcumk neuron@git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] wtaqeht ^caliper@2.9.1%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~variorum build_system=cmake build_type=Release cuda_arch=70 generator=make patches=7b1ffa4 arch=linux-rhel7-skylake | |
| [^] inlzf5z ^adiak@0.2.2%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake | |
| [^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - 2vmdhyp ^libsonata-report@git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] tuewa3t ^nmodl@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] l76xnwr ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mfss4bt ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] qbhlkgj ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] f6wairf ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] qe4yfyl ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.2.2-inlzf5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/caliper-2.9.1-wtaqeh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-qe4yfy | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124_develop-tuewa3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_nvhpc-23.1-skylake/libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e_develop-2vmdhy | |
| ==> Installing neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop-cwkcumkqutsrwnlzr4vjgbuzamff5jsm [55/55] | |
| ==> No binary for neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop-cwkcumkqutsrwnlzr4vjgbuzamff5jsm found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop-cwkcumkqutsrwnlzr4vjgbuzamff5jsm | |
| Stage: 20.71s. Cmake: 1m 24.65s. Build: 34m 37.73s. Install: 26.00s. Post-install: 0.95s. Total: 36m 50.73s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_nvhpc-23.1-skylake/neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b_develop-cwkcum | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be cwkcumkqutsrwnlzr4vjgbuzamff5jsm | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2158820/ccache | |
| Config file: /nvme/bbpcihpcproj12/2158820/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu May 2 07:43:04 2024 | |
| Cacheable calls: 984 / 1087 (90.52%) | |
| Hits: 951 / 984 (96.65%) | |
| Direct: 516 / 951 (54.26%) | |
| Preprocessed: 435 / 951 (45.74%) | |
| Misses: 33 / 984 ( 3.35%) | |
| Uncacheable calls: 103 / 1087 ( 9.48%) | |
| Autoconf compile/link: 5 / 103 ( 4.85%) | |
| Called for linking: 85 / 103 (82.52%) | |
| Called for preprocessing: 2 / 103 ( 1.94%) | |
| Compilation failed: 2 / 103 ( 1.94%) | |
| No input file: 8 / 103 ( 7.77%) | |
| Preprocessing failed: 1 / 103 ( 0.97%) | |
| Successful lookups: | |
| Direct: 516 / 983 (52.49%) | |
| Preprocessed: 435 / 466 (93.35%) | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (89.79%) | |
| Files: 13682 | |
| Cleanups: 2 | |
| Hits: 951 / 982 (96.84%) | |
| Misses: 31 / 982 ( 3.16%) | |
| Reads: 1965 | |
| Writes: 418 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1714628587:step_script [0Ksection_start:1714628587:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=130927 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1714628609:archive_cache [0Ksection_start:1714628609:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=131259 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1265071 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=131345 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1265071 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=131419 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1265071 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1714628611:upload_artifacts_on_success [0Ksection_start:1714628611:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1714628612:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1714625747:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1714625747:resolve_secrets [0Ksection_start:1714625747:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1537866346, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 208761, build ref , job ID 1265061 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1265061_PROD_P2160_CP2_C4 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2158788 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1265061_PROD_P2160_CP2_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --ntasks=2 --jobid=2158788 --cpus-per-task=8 --mem=160G | |
| section_end:1714625748:prepare_executor [0Ksection_start:1714625748:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i6n16 via bbpv1.epfl.ch... | |
| section_end:1714625752:prepare_script [0Ksection_start:1714625752:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1714625753:get_sources [0Ksection_start:1714625753:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=83141 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1714625758:restore_cache [0Ksection_start:1714625758:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for spack_setup (1265057)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=83389 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1265057 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1714625760:download_artifacts [0Ksection_start:1714625760:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265061/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265061/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265061/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265061/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265061/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265061/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761/J1265061_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2158788/ccache | |
| Config file: /nvme/bbpcihpcproj12/2158788/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu May 2 06:56:05 2024 | |
| Local storage: | |
| Cache size (GB): 0.45 / 0.51 (88.42%) | |
| Files: 3846 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - tuewa3t nmodl@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] l76xnwr ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mfss4bt ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] qbhlkgj ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] f6wairf ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761, but it is owned by 0 | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj | |
| ==> Installing nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124=develop-tuewa3tvqrz6sljwoqxxmv443hbbe6tf [24/24] | |
| ==> No binary for nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124=develop-tuewa3tvqrz6sljwoqxxmv443hbbe6tf found: installing from source | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124=develop-tuewa3tvqrz6sljwoqxxmv443hbbe6tf | |
| Stage: 42.64s. Cmake: 3.03s. Build: 3m 9.51s. Install: 2.37s. Post-install: 0.60s. Total: 3m 58.50s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/software/install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124_develop-tuewa3 | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be tuewa3tvqrz6sljwoqxxmv443hbbe6tf | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2158788/ccache | |
| Config file: /nvme/bbpcihpcproj12/2158788/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu May 2 07:02:08 2024 | |
| Cacheable calls: 136 / 162 (83.95%) | |
| Hits: 134 / 136 (98.53%) | |
| Direct: 26 / 134 (19.40%) | |
| Preprocessed: 108 / 134 (80.60%) | |
| Misses: 2 / 136 ( 1.47%) | |
| Uncacheable calls: 26 / 162 (16.05%) | |
| Called for linking: 23 / 26 (88.46%) | |
| No input file: 3 / 26 (11.54%) | |
| Successful lookups: | |
| Direct: 26 / 136 (19.12%) | |
| Preprocessed: 108 / 110 (98.18%) | |
| Local storage: | |
| Cache size (GB): 0.45 / 0.51 (88.43%) | |
| Files: 3850 | |
| Hits: 134 / 136 (98.53%) | |
| Misses: 2 / 136 ( 1.47%) | |
| Reads: 272 | |
| Writes: 4 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1714626129:step_script [0Ksection_start:1714626129:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=88013 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1714626151:archive_cache [0Ksection_start:1714626151:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=88237 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1265061 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=88275 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1265061 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=88315 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1265061 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1714626153:upload_artifacts_on_success [0Ksection_start:1714626153:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1714626154:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m | |
| [0K on macos-arm64 vGzz-bdp[0;m | |
| section_start:1714625607:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1714625607:resolve_secrets [0Ksection_start:1714625607:prepare_executor [0K[0K[36;1mPreparing the "shell" executor[0;m[0;m | |
| [0KUsing Shell executor...[0;m | |
| section_end:1714625607:prepare_executor [0Ksection_start:1714625607:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on bbpmacglr01.bbp.epfl.ch... | |
| section_end:1714625607:prepare_script [0Ksection_start:1714625607:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mFetching changes with git depth set to 20...[0;m | |
| Initialized empty Git repository in /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/.git/ | |
| [32;1mCreated fresh repository.[0;m | |
| [32;1mChecking out c37983f6 as hines/hoc-class-instance-syntax...[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1714625610:get_sources [0Ksection_start:1714625610:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-hines/hoc-class-instance-syntax-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=71295 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
| No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1714625610:restore_cache [0Ksection_start:1714625610:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ real_python=$(python3 resolve_shim.py)[0;m | |
| [32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m | |
| python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python | |
| [32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m | |
| [32;1m$ venv/bin/python3 -m ensurepip --upgrade --default-pip[0;m | |
| Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpdr2tclgc | |
| Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpdr2tclgc/setuptools-68.2.2-py3-none-any.whl | |
| Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpdr2tclgc/pip-23.3.1-py3-none-any.whl | |
| Installing collected packages: setuptools, pip | |
| Successfully installed pip-23.3.1 setuptools-68.2.2 | |
| [32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m | |
| Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1) | |
| Collecting pip | |
| Using cached pip-24.0-py3-none-any.whl.metadata (3.6 kB) | |
| Collecting wheel (from -r nrn_requirements.txt (line 1)) | |
| Using cached wheel-0.43.0-py3-none-any.whl.metadata (2.2 kB) | |
| Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (68.2.2) | |
| Collecting setuptools (from -r nrn_requirements.txt (line 2)) | |
| Using cached setuptools-69.5.1-py3-none-any.whl.metadata (6.2 kB) | |
| Collecting setuptools_scm (from -r nrn_requirements.txt (line 3)) | |
| Using cached setuptools_scm-8.0.4-py3-none-any.whl.metadata (6.4 kB) | |
| Collecting scikit-build (from -r nrn_requirements.txt (line 4)) | |
| Using cached scikit_build-0.17.6-py3-none-any.whl.metadata (14 kB) | |
| Collecting matplotlib (from -r nrn_requirements.txt (line 5)) | |
| Using cached matplotlib-3.8.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB) | |
| Collecting bokeh<3 (from -r nrn_requirements.txt (line 7)) | |
| Using cached bokeh-2.4.3-py3-none-any.whl.metadata (14 kB) | |
| Collecting ipython (from -r nrn_requirements.txt (line 8)) | |
| Using cached ipython-8.24.0-py3-none-any.whl.metadata (4.9 kB) | |
| Collecting cython<3 (from -r nrn_requirements.txt (line 9)) | |
| Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB) | |
| Collecting packaging (from -r nrn_requirements.txt (line 10)) | |
| Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) | |
| Collecting pytest<=8.1.1 (from -r nrn_requirements.txt (line 11)) | |
| Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB) | |
| Collecting pytest-cov (from -r nrn_requirements.txt (line 12)) | |
| Using cached pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB) | |
| Collecting mpi4py (from -r nrn_requirements.txt (line 13)) | |
| Using cached mpi4py-3.1.6-cp310-cp310-macosx_12_0_arm64.whl | |
| Collecting numpy (from -r nrn_requirements.txt (line 14)) | |
| Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB) | |
| Collecting find_libpython (from -r nrn_requirements.txt (line 15)) | |
| Using cached find_libpython-0.4.0-py3-none-any.whl.metadata (2.8 kB) | |
| Collecting typing-extensions (from setuptools_scm->-r nrn_requirements.txt (line 3)) | |
| Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB) | |
| Collecting tomli>=1 (from setuptools_scm->-r nrn_requirements.txt (line 3)) | |
| Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB) | |
| Collecting distro (from scikit-build->-r nrn_requirements.txt (line 4)) | |
| Using cached distro-1.9.0-py3-none-any.whl.metadata (6.8 kB) | |
| Collecting contourpy>=1.0.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB) | |
| Collecting cycler>=0.10 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) | |
| Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached fonttools-4.51.0-cp310-cp310-macosx_10_9_universal2.whl.metadata (159 kB) | |
| Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB) | |
| Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.2 kB) | |
| Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB) | |
| Collecting python-dateutil>=2.7 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) | |
| Collecting Jinja2>=2.9 (from bokeh<3->-r nrn_requirements.txt (line 7)) | |
| Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) | |
| Collecting PyYAML>=3.10 (from bokeh<3->-r nrn_requirements.txt (line 7)) | |
| Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB) | |
| Collecting tornado>=5.1 (from bokeh<3->-r nrn_requirements.txt (line 7)) | |
| Using cached tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl.metadata (2.5 kB) | |
| Collecting decorator (from ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached decorator-5.1.1-py3-none-any.whl.metadata (4.0 kB) | |
| Collecting jedi>=0.16 (from ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached jedi-0.19.1-py2.py3-none-any.whl.metadata (22 kB) | |
| Collecting matplotlib-inline (from ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached matplotlib_inline-0.1.7-py3-none-any.whl.metadata (3.9 kB) | |
| Collecting prompt-toolkit<3.1.0,>=3.0.41 (from ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached prompt_toolkit-3.0.43-py3-none-any.whl.metadata (6.5 kB) | |
| Collecting pygments>=2.4.0 (from ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting stack-data (from ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached stack_data-0.6.3-py3-none-any.whl.metadata (18 kB) | |
| Collecting traitlets>=5.13.0 (from ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached traitlets-5.14.3-py3-none-any.whl.metadata (10 kB) | |
| Collecting exceptiongroup (from ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached exceptiongroup-1.2.1-py3-none-any.whl.metadata (6.6 kB) | |
| Collecting pexpect>4.3 (from ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB) | |
| Collecting iniconfig (from pytest<=8.1.1->-r nrn_requirements.txt (line 11)) | |
| Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting pluggy<2.0,>=1.4 (from pytest<=8.1.1->-r nrn_requirements.txt (line 11)) | |
| Using cached pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB) | |
| Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov->-r nrn_requirements.txt (line 12)) | |
| Using cached coverage-7.5.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (8.2 kB) | |
| Collecting parso<0.9.0,>=0.8.3 (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached parso-0.8.4-py2.py3-none-any.whl.metadata (7.7 kB) | |
| Collecting MarkupSafe>=2.0 (from Jinja2>=2.9->bokeh<3->-r nrn_requirements.txt (line 7)) | |
| Using cached MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB) | |
| Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached ptyprocess-0.7.0-py2.py3-none-any.whl.metadata (1.3 kB) | |
| Collecting wcwidth (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached wcwidth-0.2.13-py2.py3-none-any.whl.metadata (14 kB) | |
| Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) | |
| Collecting executing>=1.2.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached executing-2.0.1-py2.py3-none-any.whl.metadata (9.0 kB) | |
| Collecting asttokens>=2.1.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB) | |
| Collecting pure-eval (from stack-data->ipython->-r nrn_requirements.txt (line 8)) | |
| Using cached pure_eval-0.2.2-py3-none-any.whl.metadata (6.2 kB) | |
| Using cached pip-24.0-py3-none-any.whl (2.1 MB) | |
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| Installing collected packages: wcwidth, pure-eval, ptyprocess, find_libpython, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, executing, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython | |
| Attempting uninstall: setuptools | |
| Found existing installation: setuptools 68.2.2 | |
| Uninstalling setuptools-68.2.2: | |
| Successfully uninstalled setuptools-68.2.2 | |
| Attempting uninstall: pip | |
| Found existing installation: pip 23.3.1 | |
| Uninstalling pip-23.3.1: | |
| Successfully uninstalled pip-23.3.1 | |
| Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.5 PyYAML-6.0.1 asttokens-2.4.1 bokeh-2.4.3 contourpy-1.2.1 coverage-7.5.0 cycler-0.12.1 cython-0.29.37 decorator-5.1.1 distro-1.9.0 exceptiongroup-1.2.1 executing-2.0.1 find_libpython-0.4.0 fonttools-4.51.0 iniconfig-2.0.0 ipython-8.24.0 jedi-0.19.1 kiwisolver-1.4.5 matplotlib-3.8.4 matplotlib-inline-0.1.7 mpi4py-3.1.6 numpy-1.26.4 packaging-24.0 parso-0.8.4 pexpect-4.9.0 pillow-10.3.0 pip-24.0 pluggy-1.5.0 prompt-toolkit-3.0.43 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.17.2 pyparsing-3.1.2 pytest-8.1.1 pytest-cov-5.0.0 python-dateutil-2.9.0.post0 scikit-build-0.17.6 setuptools-69.5.1 setuptools_scm-8.0.4 six-1.16.0 stack-data-0.6.3 tomli-2.0.1 tornado-6.4 traitlets-5.14.3 typing-extensions-4.11.0 wcwidth-0.2.13 wheel-0.43.0 | |
| [32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m | |
| Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl' | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl'... | |
| Submodule path 'external/nmodl': checked out '70553cc4d9092aafed42aa49ac4e730830af1124' | |
| Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions' | |
| Submodule 'ext/backward' (https://github.com/bombela/backward-cpp.git) registered for path 'external/nmodl/ext/backward' | |
| Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2' | |
| Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11' | |
| Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen' | |
| Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt' | |
| Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json' | |
| Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11' | |
| Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog' | |
| Submodule 'test/usecases/references' (https://github.com/BlueBrain/nmodl-references.git) registered for path 'external/nmodl/test/usecases/references' | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl/ext/backward'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl/ext/catch2'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl/ext/cli11'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl/ext/eigen'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl/ext/fmt'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl/ext/json'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl/ext/pybind11'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl/ext/spdlog'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl/test/usecases/references'... | |
| Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out '8f8115597817365c5c4fa39e217b3ab0b3640cb2' | |
| Submodule path 'external/nmodl/ext/backward': checked out '51f0700452cf71c57d43c2d028277b24cde32502' | |
| From https://github.com/catchorg/Catch2 | |
| * branch 8ac8190e494a381072c89f5e161b92a08d98b37b -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b' | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch f4d0731cebb123ff0ace712c099dffbcd2c58e5a -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/cli11': checked out 'f4d0731cebb123ff0ace712c099dffbcd2c58e5a' | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
| From https://github.com/fmtlib/fmt | |
| * branch e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281' | |
| From https://github.com/nlohmann/json | |
| * branch 9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/json': checked out '9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03' | |
| From https://github.com/pybind/pybind11 | |
| * branch 8a099e44b3d5f85b20f05828d919d2332a8de841 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/pybind11': checked out '8a099e44b3d5f85b20f05828d919d2332a8de841' | |
| From https://github.com/gabime/spdlog | |
| * branch 7c02e204c92545f869e2f04edaab1f19fe8b19fd -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/spdlog': checked out '7c02e204c92545f869e2f04edaab1f19fe8b19fd' | |
| From https://github.com/BlueBrain/nmodl-references | |
| * branch c9f0aaa9270e9a49598c5424ad03eaa48a7eec47 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/test/usecases/references': checked out 'c9f0aaa9270e9a49598c5424ad03eaa48a7eec47' | |
| [32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m | |
| Ignoring importlib-metadata: markers 'python_version < "3.9"' don't match your environment | |
| Ignoring importlib-resources: markers 'python_version < "3.9"' don't match your environment | |
| Collecting scikit-build-core (from -r external/nmodl/requirements.txt (line 2)) | |
| Using cached scikit_build_core-0.9.3-py3-none-any.whl.metadata (19 kB) | |
| Requirement already satisfied: setuptools-scm>=8.0 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 3)) (8.0.4) | |
| Requirement already satisfied: Jinja2>=2.9.3 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 4)) (3.1.3) | |
| Requirement already satisfied: PyYAML>=3.13 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 5)) (6.0.1) | |
| Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 7)) (0.4.0) | |
| Collecting sympy>=1.3 (from -r external/nmodl/requirements.txt (line 8)) | |
| Using cached sympy-1.12-py3-none-any.whl.metadata (12 kB) | |
| Requirement already satisfied: pytest<=8.1.1 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 12)) (8.1.1) | |
| Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 13)) (5.0.0) | |
| Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 14)) (1.26.4) | |
| Collecting jupyter-client (from -r external/nmodl/requirements.txt (line 16)) | |
| Using cached jupyter_client-8.6.1-py3-none-any.whl.metadata (8.3 kB) | |
| Collecting jupyter (from -r external/nmodl/requirements.txt (line 17)) | |
| Using cached jupyter-1.0.0-py2.py3-none-any.whl.metadata (995 bytes) | |
| Collecting myst_parser<2.0.0 (from -r external/nmodl/requirements.txt (line 18)) | |
| Using cached myst_parser-1.0.0-py3-none-any.whl.metadata (5.5 kB) | |
| Collecting mistune<3 (from -r external/nmodl/requirements.txt (line 19)) | |
| Using cached mistune-2.0.5-py2.py3-none-any.whl.metadata (1.5 kB) | |
| Collecting nbconvert (from -r external/nmodl/requirements.txt (line 20)) | |
| Using cached nbconvert-7.16.4-py3-none-any.whl.metadata (8.5 kB) | |
| Collecting nbsphinx>=0.3.2 (from -r external/nmodl/requirements.txt (line 21)) | |
| Using cached nbsphinx-0.9.3-py3-none-any.whl.metadata (2.1 kB) | |
| Collecting sphinxcontrib-applehelp<1.0.3 (from -r external/nmodl/requirements.txt (line 22)) | |
| Using cached sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl.metadata (1.4 kB) | |
| Collecting sphinxcontrib-htmlhelp<=2.0.0 (from -r external/nmodl/requirements.txt (line 23)) | |
| Using cached sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl.metadata (1.6 kB) | |
| Collecting sphinx<6 (from -r external/nmodl/requirements.txt (line 24)) | |
| Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB) | |
| Collecting sphinx-rtd-theme (from -r external/nmodl/requirements.txt (line 25)) | |
| Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl.metadata (4.4 kB) | |
| Collecting docutils<0.20 (from -r external/nmodl/requirements.txt (line 26)) | |
| Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB) | |
| Requirement already satisfied: exceptiongroup>=1.0 in ./venv/lib/python3.10/site-packages (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) (1.2.1) | |
| Requirement already satisfied: packaging>=21.3 in ./venv/lib/python3.10/site-packages (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) (24.0) | |
| Collecting pathspec>=0.10.1 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached pathspec-0.12.1-py3-none-any.whl.metadata (21 kB) | |
| Requirement already satisfied: tomli>=1.2.2 in ./venv/lib/python3.10/site-packages (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) (2.0.1) | |
| Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from setuptools-scm>=8.0->-r external/nmodl/requirements.txt (line 3)) (69.5.1) | |
| Requirement already satisfied: typing-extensions in ./venv/lib/python3.10/site-packages (from setuptools-scm>=8.0->-r external/nmodl/requirements.txt (line 3)) (4.11.0) | |
| Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 4)) (2.1.5) | |
| Collecting mpmath>=0.19 (from sympy>=1.3->-r external/nmodl/requirements.txt (line 8)) | |
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| Collecting uri-template (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached uri_template-1.3.0-py3-none-any.whl.metadata (8.8 kB) | |
| Collecting webcolors>=1.11 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached webcolors-1.13-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting cffi>=1.0.1 (from argon2-cffi-bindings->argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached cffi-1.16.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (1.5 kB) | |
| Collecting pycparser (from cffi>=1.0.1->argon2-cffi-bindings->argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes) | |
| Collecting arrow>=0.15.0 (from isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached arrow-1.3.0-py3-none-any.whl.metadata (7.5 kB) | |
| Collecting types-python-dateutil>=2.8.10 (from arrow>=0.15.0->isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached types_python_dateutil-2.9.0.20240316-py3-none-any.whl.metadata (1.8 kB) | |
| Using cached scikit_build_core-0.9.3-py3-none-any.whl (151 kB) | |
| Using cached sympy-1.12-py3-none-any.whl (5.7 MB) | |
| Using cached jupyter_client-8.6.1-py3-none-any.whl (105 kB) | |
| Using cached jupyter-1.0.0-py2.py3-none-any.whl (2.7 kB) | |
| Using cached myst_parser-1.0.0-py3-none-any.whl (77 kB) | |
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| Using cached nbconvert-7.16.4-py3-none-any.whl (257 kB) | |
| Using cached nbsphinx-0.9.3-py3-none-any.whl (31 kB) | |
| Using cached sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) | |
| Using cached sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) | |
| Using cached sphinx-5.3.0-py3-none-any.whl (3.2 MB) | |
| Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl (2.8 MB) | |
| Using cached docutils-0.19-py3-none-any.whl (570 kB) | |
| Using cached alabaster-0.7.16-py3-none-any.whl (13 kB) | |
| Using cached Babel-2.14.0-py3-none-any.whl (11.0 MB) | |
| Using cached bleach-6.1.0-py3-none-any.whl (162 kB) | |
| Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) | |
| Using cached jupyter_core-5.7.2-py3-none-any.whl (28 kB) | |
| Using cached markdown_it_py-2.2.0-py3-none-any.whl (84 kB) | |
| Using cached mdit_py_plugins-0.3.5-py3-none-any.whl (52 kB) | |
| Using cached mpmath-1.3.0-py3-none-any.whl (536 kB) | |
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| Using cached nbformat-5.10.4-py3-none-any.whl (78 kB) | |
| Using cached pandocfilters-1.5.1-py2.py3-none-any.whl (8.7 kB) | |
| Using cached pathspec-0.12.1-py3-none-any.whl (31 kB) | |
| Using cached pyzmq-26.0.3-cp310-cp310-macosx_10_15_universal2.whl (1.4 MB) | |
| Using cached requests-2.31.0-py3-none-any.whl (62 kB) | |
| Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) | |
| Using cached sphinxcontrib_jquery-4.1-py2.py3-none-any.whl (121 kB) | |
| Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl (92 kB) | |
| Using cached beautifulsoup4-4.12.3-py3-none-any.whl (147 kB) | |
| Using cached defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) | |
| Using cached ipykernel-6.29.4-py3-none-any.whl (117 kB) | |
| Using cached ipywidgets-8.1.2-py3-none-any.whl (139 kB) | |
| Using cached jupyter_console-6.6.3-py3-none-any.whl (24 kB) | |
| Using cached jupyterlab_pygments-0.3.0-py3-none-any.whl (15 kB) | |
| Using cached notebook-7.1.3-py3-none-any.whl (5.0 MB) | |
| Using cached qtconsole-5.5.1-py3-none-any.whl (123 kB) | |
| Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl (83 kB) | |
| Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) | |
| Using cached sphinxcontrib_qthelp-1.0.7-py3-none-any.whl (89 kB) | |
| Using cached tinycss2-1.3.0-py3-none-any.whl (22 kB) | |
| Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) | |
| Using cached charset_normalizer-3.3.2-cp310-cp310-macosx_11_0_arm64.whl (120 kB) | |
| Using cached comm-0.2.2-py3-none-any.whl (7.2 kB) | |
| Using cached debugpy-1.8.1-py2.py3-none-any.whl (4.8 MB) | |
| Using cached fastjsonschema-2.19.1-py3-none-any.whl (23 kB) | |
| Using cached idna-3.7-py3-none-any.whl (66 kB) | |
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| Using cached jupyter_server-2.14.0-py3-none-any.whl (383 kB) | |
| Using cached jupyterlab-4.1.8-py3-none-any.whl (11.4 MB) | |
| Using cached jupyterlab_server-2.27.1-py3-none-any.whl (59 kB) | |
| Using cached jupyterlab_widgets-3.0.10-py3-none-any.whl (215 kB) | |
| Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) | |
| Using cached notebook_shim-0.2.4-py3-none-any.whl (13 kB) | |
| Using cached platformdirs-4.2.1-py3-none-any.whl (17 kB) | |
| Using cached QtPy-2.4.1-py3-none-any.whl (93 kB) | |
| Using cached soupsieve-2.5-py3-none-any.whl (36 kB) | |
| Using cached urllib3-2.2.1-py3-none-any.whl (121 kB) | |
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| Using cached appnope-0.1.4-py2.py3-none-any.whl (4.3 kB) | |
| Using cached nest_asyncio-1.6.0-py3-none-any.whl (5.2 kB) | |
| Using cached psutil-5.9.8-cp38-abi3-macosx_11_0_arm64.whl (249 kB) | |
| Using cached anyio-4.3.0-py3-none-any.whl (85 kB) | |
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| Using cached rfc3339_validator-0.1.4-py2.py3-none-any.whl (3.5 kB) | |
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| Installing collected packages: webencodings, snowballstemmer, mpmath, mistune, fastjsonschema, widgetsnbextension, websocket-client, webcolors, urllib3, uri-template, types-python-dateutil, tinycss2, terminado, sympy, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, sniffio, send2trash, rpds-py, rfc3986-validator, rfc3339-validator, qtpy, pyzmq, python-json-logger, pycparser, psutil, prometheus-client, platformdirs, pathspec, pandocfilters, overrides, nest-asyncio, mdurl, jupyterlab-widgets, jupyterlab-pygments, jsonpointer, json5, imagesize, idna, h11, fqdn, docutils, defusedxml, debugpy, comm, charset-normalizer, certifi, bleach, babel, attrs, async-lru, appnope, alabaster, scikit-build-core, requests, referencing, markdown-it-py, jupyter-server-terminals, jupyter-core, httpcore, cffi, beautifulsoup4, arrow, anyio, sphinx, mdit-py-plugins, jupyter-client, jsonschema-specifications, isoduration, httpx, argon2-cffi-bindings, sphinxcontrib-jquery, myst_parser, jsonschema, ipywidgets, ipykernel, argon2-cffi, sphinx-rtd-theme, qtconsole, nbformat, jupyter-console, nbclient, jupyter-events, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, notebook, jupyter | |
| Successfully installed alabaster-0.7.16 anyio-4.3.0 appnope-0.1.4 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 async-lru-2.0.4 attrs-23.2.0 babel-2.14.0 beautifulsoup4-4.12.3 bleach-6.1.0 certifi-2024.2.2 cffi-1.16.0 charset-normalizer-3.3.2 comm-0.2.2 debugpy-1.8.1 defusedxml-0.7.1 docutils-0.19 fastjsonschema-2.19.1 fqdn-1.5.1 h11-0.14.0 httpcore-1.0.5 httpx-0.27.0 idna-3.7 imagesize-1.4.1 ipykernel-6.29.4 ipywidgets-8.1.2 isoduration-20.11.0 json5-0.9.25 jsonpointer-2.4 jsonschema-4.22.0 jsonschema-specifications-2023.12.1 jupyter-1.0.0 jupyter-client-8.6.1 jupyter-console-6.6.3 jupyter-core-5.7.2 jupyter-events-0.10.0 jupyter-lsp-2.2.5 jupyter-server-2.14.0 jupyter-server-terminals-0.5.3 jupyterlab-4.1.8 jupyterlab-pygments-0.3.0 jupyterlab-server-2.27.1 jupyterlab-widgets-3.0.10 markdown-it-py-2.2.0 mdit-py-plugins-0.3.5 mdurl-0.1.2 mistune-2.0.5 mpmath-1.3.0 myst_parser-1.0.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.9.3 nest-asyncio-1.6.0 notebook-7.1.3 notebook-shim-0.2.4 overrides-7.7.0 pandocfilters-1.5.1 pathspec-0.12.1 platformdirs-4.2.1 prometheus-client-0.20.0 psutil-5.9.8 pycparser-2.22 python-json-logger-2.0.7 pyzmq-26.0.3 qtconsole-5.5.1 qtpy-2.4.1 referencing-0.35.1 requests-2.31.0 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.18.0 scikit-build-core-0.9.3 send2trash-1.8.3 sniffio-1.3.1 snowballstemmer-2.2.0 soupsieve-2.5 sphinx-5.3.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 sympy-1.12 terminado-0.18.1 tinycss2-1.3.0 types-python-dateutil-2.9.0.20240316 uri-template-1.3.0 urllib3-2.2.1 webcolors-1.13 webencodings-0.5.1 websocket-client-1.8.0 widgetsnbextension-4.0.10 | |
| [32;1m$ source ./venv/bin/activate[0;m | |
| [32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m | |
| [32;1m$ ${PYTHON} --version[0;m | |
| Python 3.10.13 | |
| [32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m | |
| [32;1m$ export CXX=${CXX:-g++}[0;m | |
| [32;1m$ export CC=${CC:-gcc}[0;m | |
| [32;1m$ brew install flex bison[0;m | |
| Warning: flex 2.6.4_2 is already installed and up-to-date. | |
| To reinstall 2.6.4_2, run: | |
| brew reinstall flex | |
| Warning: bison 3.8.2 is already installed and up-to-date. | |
| To reinstall 3.8.2, run: | |
| brew reinstall bison | |
| [32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m | |
| [32;1m$ export INSTALL_DIR=$(pwd)/install[0;m | |
| [32;1m$ echo $LANG[0;m | |
| [32;1m$ echo $LC_ALL[0;m | |
| [32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m | |
| [32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m | |
| [32;1m$ cmake_args=(-G Ninja)[0;m | |
| [32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m | |
| [32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m | |
| [32;1m$ mkdir build && cd build[0;m | |
| [32;1m$ echo "Building with ${cmake_args[@]}"[0;m | |
| Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/venv/bin/python | |
| [32;1m$ cmake .. "${cmake_args[@]}"[0;m | |
| -- The C compiler identification is AppleClang 14.0.0.14000029 | |
| -- The CXX compiler identification is AppleClang 14.0.0.14000029 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /usr/bin/gcc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /usr/bin/g++ - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check | |
| -- Sub-module : missing external/coding-conventions : running git submodule update --init | |
| Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions' | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/coding-conventions'... | |
| Submodule path 'external/coding-conventions': checked out '3d157f9c8ea94d196a825aaa7f523265e360dc4b' | |
| -- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123 | |
| Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123' | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/Random123'... | |
| From https://github.com/BlueBrain/Random123 | |
| * branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD | |
| Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1' | |
| -- 3rd party project: using Random123 from "external/Random123" | |
| -- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen | |
| Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen' | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/eigen'... | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
| Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
| -- 3rd party project: using eigen from "external/eigen" | |
| -- Enabling sanitizers: address | |
| -- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| -- Checking if /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/venv/bin/python is a working python | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") | |
| -- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6") | |
| -- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include | |
| -- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
| -- Found Threads: TRUE | |
| -- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11 | |
| Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11' | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/CLI11'... | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD | |
| Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2' | |
| -- 3rd party project: using CLI11 from "external/CLI11" | |
| CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required): | |
| Compatibility with CMake < 3.5 will be removed from a future version of | |
| CMake. | |
| Update the VERSION argument <min> value or use a ...<max> suffix to tell | |
| CMake that the project does not need compatibility with older versions. | |
| -- Building CoreNEURON | |
| -- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") | |
| -- Found Perl: /usr/bin/perl (found version "5.30.3") | |
| -- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH) | |
| -- Sub-project : using nmodl from from /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl | |
| -- CHECKING FOR FLEX/BISON | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") | |
| -- Adding Flex include path as : /opt/homebrew/opt/flex/include/ | |
| -- NMODL_TEST_FORMATTING: OFF | |
| -- NMODL_GIT_HOOKS: OFF | |
| -- NMODL_GIT_COMMIT_HOOKS: | |
| -- NMODL_GIT_PUSH_HOOKS: courtesy-msg | |
| -- NMODL_STATIC_ANALYSIS: OFF | |
| -- NMODL_TEST_STATIC_ANALYSIS: OFF | |
| -- 3rd party project: using eigen from "ext/eigen" | |
| -- 3rd party project: using fmt from "ext/fmt" | |
| -- Version: 10.2.1 | |
| -- Build type: Custom | |
| -- 3rd party project: using json from "ext/json" | |
| -- Using the multi-header code from /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/nmodl/ext/json/include/ | |
| -- 3rd party project: using pybind11 from "ext/pybind11" | |
| -- pybind11 v2.11.1 | |
| CMake Warning (dev) at external/nmodl/ext/pybind11/tools/FindPythonLibsNew.cmake:98 (find_package): | |
| Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules | |
| are removed. Run "cmake --help-policy CMP0148" for policy details. Use | |
| the cmake_policy command to set the policy and suppress this warning. | |
| Call Stack (most recent call first): | |
| external/nmodl/ext/pybind11/tools/pybind11Tools.cmake:50 (find_package) | |
| external/nmodl/ext/pybind11/tools/pybind11Common.cmake:188 (include) | |
| external/nmodl/ext/pybind11/CMakeLists.txt:210 (include) | |
| This warning is for project developers. Use -Wno-dev to suppress it. | |
| -- Found PythonInterp: /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.6") | |
| -- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- 3rd party project: using spdlog from "ext/spdlog" | |
| -- Build spdlog: 1.13.0 | |
| CMake Warning (dev) at external/nmodl/ext/spdlog/CMakeLists.txt:91 (option): | |
| Policy CMP0077 is not set: option() honors normal variables. Run "cmake | |
| --help-policy CMP0077" for policy details. Use the cmake_policy command to | |
| set the policy and suppress this warning. | |
| For compatibility with older versions of CMake, option is clearing the | |
| normal variable 'SPDLOG_FMT_EXTERNAL'. | |
| This warning is for project developers. Use -Wno-dev to suppress it. | |
| -- Build type: Custom | |
| -- CHECKING FOR PYTHON | |
| CMake Warning (dev) at external/nmodl/CMakeLists.txt:173 (find_package): | |
| Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules | |
| are removed. Run "cmake --help-policy CMP0148" for policy details. Use | |
| the cmake_policy command to set the policy and suppress this warning. | |
| This warning is for project developers. Use -Wno-dev to suppress it. | |
| -- Found PythonInterp: /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.8") | |
| -- | |
| -- Configured NMODL 0.0 (70553cc 2024-05-01 23:16:44 +0200) | |
| -- | |
| -- You can now build NMODL using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------------+-------------------------------------------------------- | |
| -- test | Run unit tests | |
| -- install | Will install NMODL to: /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/install | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd | |
| -- Build Type | Custom | |
| -- Python Bindings | OFF | |
| -- Flex | /opt/homebrew/opt/flex/bin/flex | |
| -- Bison | /opt/homebrew/opt/bison/bin/bison | |
| -- Python | /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/venv/bin/python | |
| -- Linked against | ON | |
| -- --------------------+-------------------------------------------------------- | |
| -- See documentation : https://github.com/BlueBrain/nmodl/ | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| -- | |
| -- CoreNEURON is enabled with following build configuration: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
| -- Build Type | SHARED | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
| -- OpenMP | ON | |
| -- NMODL PATH | /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/bin/nmodl | |
| -- NMODL FLAGS | | |
| -- GPU Support | OFF | |
| -- Auto Timeout | ON | |
| -- Wrap exp() | OFF | |
| -- SplayTree Queue | ON | |
| -- NetReceive Buffer | ON | |
| -- Caliper | OFF | |
| -- Likwid | OFF | |
| -- Unit Tests | ON | |
| -- Reporting | OFF | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| Extracting link flags from target 'nrngnu', beware that this can be fragile. Got: | |
| Extracting link flags from target 'sparse13', beware that this can be fragile. Got: | |
| Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: | |
| Generating link flags from path /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib | |
| Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
| -- Sub-module : missing /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/catch2 : running git submodule update --init | |
| Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2' | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/external/catch2'... | |
| Submodule path 'external/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b' | |
| -- Found Python module 'pytest' with version(s): 8.1.1 | |
| -- Found Python module 'pytest_cov' with version(s): 5.0.0 | |
| -- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata | |
| Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata' | |
| Cloning into '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/test/rxd/testdata'... | |
| From https://github.com/neuronsimulator/rxdtestdata | |
| * branch 30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD | |
| Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58' | |
| -- 3rd party project: using rxd/testdata from "test/rxd/testdata" | |
| -- Found Python module 'mpi4py' with version(s): 3.1.6 | |
| -- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled | |
| -- Found Python module 'mpi4py' with version(s): 3.1.6 | |
| -- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled | |
| -- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled | |
| -- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0") | |
| -- | |
| -- Configured NEURON 9.0.0 | |
| -- | |
| -- You can now build NEURON using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------+-------------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------+-------------------------------------------------------------- | |
| -- install | Will install NEURON to: /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/install | |
| -- | Change the install location of NEURON using: | |
| -- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path> | |
| -- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean | |
| -- uninstall | Removes files installed by make install (todo) | |
| -- --------------+-------------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------+-------------------------------------------------------------- | |
| -- C COMPILER | /usr/bin/gcc | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug) | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd | |
| -- Shared | ON | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
| -- LIB | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
| -- Python | ON | |
| -- DYNAMIC | OFF | |
| -- MODULE | ON | |
| -- python3.10 (default) | |
| -- EXE | /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/venv/bin/python | |
| -- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 | |
| -- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd | |
| -- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd | |
| -- RX3D | OFF | |
| -- Interviews | OFF | |
| -- CoreNEURON | ON | |
| -- PATH | /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/coreneuron | |
| -- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
| -- Tests | ON | |
| -- --------------+-------------------------------------------------------------- | |
| -- See documentation : https://www.neuron.yale.edu/neuron/ | |
| -- --------------+-------------------------------------------------------------- | |
| -- | |
| -- Configuring done (26.7s) | |
| -- Generating done (0.2s) | |
| -- Build files have been written to: /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build | |
| [32;1m$ ccache -z[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache -vs 2>/dev/null[0;m | |
| Cache directory: /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/ccache | |
| Config file: /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/ccache/ccache.conf | |
| System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf | |
| Stats updated: Thu May 2 06:54:57 2024 | |
| Local storage: | |
| Cache size (GiB): 0.0 / 5.0 ( 0.00%) | |
| Files: 0 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ cmake --build . --parallel[0;m | |
| [0/2] Re-checking globbed directories... | |
| [1/1922] Generating share/nrn/demo/dend3.ses | |
| [2/1922] Generating share/nrn/demo/cycle.hoc | |
| [3/1922] Generating share/nrn/demo/d3init.hoc | |
| [4/1922] Generating share/nrn/demo/demo.hoc | |
| [5/1922] Generating share/nrn/demo/demo.ses | |
| [6/1922] Generating share/nrn/demo/dend3/control.hoc | |
| [7/1922] Generating share/nrn/demo/dend3/dend3.nrn | |
| [8/1922] Generating share/nrn/demo/dend3/syn3.hoc | |
| [9/1922] Generating share/nrn/demo/dynchan.ses | |
| [10/1922] Generating share/nrn/demo/dynclamp.hoc | |
| [11/1922] Generating share/nrn/demo/dynclamp.ses | |
| [12/1922] Generating share/nrn/demo/hh.ses | |
| [13/1922] Generating share/nrn/demo/nomodel.hoc | |
| [14/1922] Generating share/nrn/demo/pyramid.nrn | |
| [15/1922] Generating share/nrn/demo/pyramid.ses | |
| [16/1922] Generating share/nrn/demo/hh.hoc | |
| [17/1922] Generating share/nrn/demo/reconst.hoc | |
| [18/1922] Generating share/nrn/demo/release.ses | |
| [19/1922] Generating share/nrn/demo/release.hoc | |
| [20/1922] Generating share/nrn/demo/release/cabpump.mod | |
| [21/1922] Update hh.mod for CoreNEURON compatibility | |
| [22/1922] Generating share/nrn/demo/release/cachan1.mod | |
| [23/1922] Generating share/nrn/demo/release/camchan.mod | |
| [24/1922] Generating share/nrn/demo/release/capump.mod | |
| [25/1922] Generating share/nrn/demo/release/invlfire.mod | |
| [26/1922] Generating share/nrn/demo/release/khhchan.mod | |
| [27/1922] Generating share/nrn/demo/release/nacaex.mod | |
| [28/1922] Generating share/nrn/demo/release/release.mod | |
| [29/1922] Generating share/nrn/demo/singhhchan.hoc | |
| [30/1922] Generating share/nrn/demo/release/nachan.mod | |
| [31/1922] Generating share/nrn/demo/singhh.ses | |
| [32/1922] Generating share/nrn/demo/singhh.hoc | |
| [33/1922] Generating share/nrn/demo/sync/cell.hoc | |
| [34/1922] Generating share/nrn/demo/sync/demosync.hoc | |
| [35/1922] Generating share/nrn/demo/sync/init.hoc | |
| [36/1922] Generating share/nrn/demo/sync/spkplot.hoc | |
| [37/1922] Generating share/nrn/demo/testca.hoc | |
| [38/1922] Generating share/nrn/lib/auditscripts/gettarname | |
| [39/1922] Generating share/nrn/lib/auditscripts/hocaudit.sh | |
| [40/1922] Generating share/nrn/demo/sync/synchronize.hoc | |
| [41/1922] Generating share/nrn/demo/sync/start.ses | |
| [42/1922] Generating share/nrn/lib/auditscripts/notes | |
| [43/1922] Generating share/nrn/lib/auditscripts/retrieve.sh | |
| [44/1922] Generating share/nrn/lib/auditscripts/saveaudit | |
| [45/1922] Generating share/nrn/lib/cleanup | |
| [46/1922] Generating share/nrn/lib/hoc/attshape.hoc | |
| [47/1922] Generating share/nrn/lib/helpdict | |
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| [55/1922] Generating share/nrn/lib/hoc/celbild/celmang.hoc | |
| [56/1922] Generating share/nrn/lib/hoc/celbild/celtopol.hoc | |
| [57/1922] Generating share/nrn/lib/hoc/chanbild.hoc | |
| [58/1922] Generating share/nrn/lib/hoc/celbild/inhomofn.hoc | |
| [59/1922] Generating share/nrn/lib/hoc/chanbild/const.hoc | |
| [60/1922] Generating share/nrn/lib/hoc/chanbild/exp.hoc | |
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| ../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| [534/1922] cd /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h | |
| fatal: No names found, cannot describe anything. | |
| [535/1922] Generating ../oc/hocusr.h | |
| [536/1922] Generating ../../share/nrn/nrnmain.cpp | |
| [537/1922] Generating ../../include/nrnmpiuse.h | |
| [538/1922] Generating ../../include/nrncvode/nrnneosm.h | |
| [539/1922] Generating ../../include/nrnconf.h | |
| [540/1922] [BISON][ocparser] Building parser with bison 3.8.2 | |
| ../src/oc/parse.ypp: warning: 108 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| [541/1922] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o | |
| [542/1922] [BISON][modlunitparser] Building parser with bison 3.8.2 | |
| [543/1922] Linking CXX shared library lib/librxdmath.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
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| [545/1922] [BISON][nocmodlparser] Building parser with bison 3.8.2 | |
| ../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| [546/1922] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnran123.cpp.o | |
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| [586/1922] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o | |
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| [592/1922] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_stats.cpp.o | |
| [593/1922] Building CXX object external/nmodl/src/pybind/CMakeFiles/pywrapper.dir/wrapper.cpp.o | |
| [594/1922] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generators_random.cpp.o | |
| [595/1922] Linking CXX static library lib/libpywrapper.a | |
| [596/1922] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_automake.cpp.o | |
| [597/1922] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_common_base.cpp.o | |
| [598/1922] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_compact.cpp.o | |
| [599/1922] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/logger.cpp.o | |
| [600/1922] Linking CXX static library lib/libutil.a | |
| [601/1922] -- NMODL : GENERATING NMODL LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/nmodl.ll:503: warning, -s option given but default rule can be matched | |
| [602/1922] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! -- | |
| [603/1922] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/diffeq.ll:100: warning, -s option given but default rule can be matched | |
| [604/1922] -- NMODL : GENERATING C(11) LEXER WITH FLEX! -- | |
| [605/1922] -- NMODL : GENERATING UNIT LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched | |
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| [608/1922] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_registrars.cpp.o | |
| [609/1922] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_cumulative_base.cpp.o | |
| [610/1922] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_multi.cpp.o | |
| [611/1922] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_helpers.cpp.o | |
| [612/1922] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_junit.cpp.o | |
| [613/1922] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_json.cpp.o | |
| [614/1922] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_transform_visitor.cpp.o | |
| [615/1922] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_info.cpp.o | |
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| [618/1922] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/modl.cpp.o | |
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| [621/1922] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/token_mapping.cpp.o | |
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| [624/1922] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/diffeq_base_lexer.cpp.o | |
| [625/1922] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_compatibility_visitor.cpp.o | |
| [626/1922] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/c11_base_lexer.cpp.o | |
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| [628/1922] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_driver.cpp.o | |
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| [630/1922] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_context.cpp.o | |
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| [661/1922] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/neuron_solve_visitor.cpp.o | |
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| [663/1922] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/semantic_analysis_visitor.cpp.o | |
| [664/1922] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/ast/ast.cpp.o | |
| [665/1922] Linking CXX static library lib/liblexer.a | |
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| [669/1922] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_visitor.cpp.o | |
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| [675/1922] Linking CXX static library lib/libpyembed.a | |
| [676/1922] Linking CXX executable bin/nocmodl | |
| [677/1922] Generating ../nrnoc/apcount.cpp | |
| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/apcount.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp | |
| Thread Safe | |
| [679/1922] Generating ../nrnoc/expsyn.cpp | |
| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/expsyn.cpp | |
| Thread Safe | |
| [680/1922] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_var_rename_visitor.cpp.o | |
| [681/1922] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/json_visitor.cpp.o | |
| [682/1922] Generating ../nrnoc/intfire1.cpp | |
| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/intfire1.cpp | |
| Thread Safe | |
| [683/1922] Generating ../nrnoc/feature.cpp | |
| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/feature.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
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| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/hh.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/intfire2.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/intfire4.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/netstim.cpp | |
| Thread Safe | |
| [688/1922] Generating ../nrnoc/oclmp.cpp | |
| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/oclmp.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/passive.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/pattern.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
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| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/stim.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/ppmark.cpp | |
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| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/svclmp.cpp | |
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| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/syn.cpp | |
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| Translating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/src/nrnoc/vclmp.cpp | |
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| [757/1922] Running nrnivmodl-core with internal mod files | |
| WARNING: No mod files found in '/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/bin', compiling default ones only! | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
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| [1216/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod | |
| [1217/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod | |
| [1218/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod | |
| [1219/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod | |
| [1220/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod | |
| [1221/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod | |
| [1222/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod | |
| [1223/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod | |
| [1224/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod | |
| [1225/1922] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/mechanism.cpp.o | |
| [1226/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc | |
| [1227/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod | |
| [1228/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod | |
| [1229/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod | |
| [1230/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod | |
| [1231/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod | |
| [1232/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod | |
| [1233/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod | |
| [1234/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod | |
| [1235/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod | |
| [1236/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod | |
| [1237/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod | |
| [1238/1922] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod | |
| [1239/1922] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/atest.mod | |
| [1240/1922] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand.mod | |
| [1241/1922] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand_art.mod | |
| [1242/1922] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand_pp.mod | |
| [1243/1922] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata.inc | |
| [1244/1922] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata.mod | |
| [1245/1922] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_pp.mod | |
| [1246/1922] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_ppts.mod | |
| [1247/1922] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_ts.mod | |
| [1248/1922] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/container.cpp.o | |
| [1249/1922] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod | |
| [1250/1922] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod | |
| [1251/1922] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod | |
| [1252/1922] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod | |
| [1253/1922] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod | |
| [1254/1922] Running utility command for hoc_module | |
| INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_BUILD=0 | |
| INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk | |
| WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org | |
| WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0 | |
| INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'}) | |
| INFO:root:RX3D is DISABLED | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. | |
| !! | |
| ******************************************************************************** | |
| Requirements should be satisfied by a PEP 517 installer. | |
| If you are using pip, you can try `pip install --use-pep517`. | |
| ******************************************************************************** | |
| !! | |
| dist.fetch_build_eggs(dist.setup_requires) | |
| WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn" is shallow and may cause errors | |
| warnings.warn(f'"{wd.path}" is shallow and may cause errors') | |
| INFO:root:running build | |
| INFO:root:running build_py | |
| INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:creating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:creating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:creating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/coreneuron_available.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:creating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:creating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
| INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
| INFO:root:creating /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:running build_ext | |
| INFO:root:==> Building Python extensions | |
| INFO:root:building 'neuron.hoc' extension | |
| INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -DCORENRN_BUILD=0=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17 | |
| INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../ | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| INFO:root:running build_scripts | |
| INFO:root:creating build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10 | |
| INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755 | |
| [1255/1922] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod | |
| [1256/1922] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod | |
| [1257/1922] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod | |
| [1258/1922] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod | |
| [1259/1922] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod | |
| [1260/1922] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod | |
| [1261/1922] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod | |
| [1262/1922] Building special[-core] for test group datahandle | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453 | |
| cfiles = | |
| Mod files: "./opaque_token.mod" "./ptr.mod" | |
| MODOBJS= ./opaque_token.o ./ptr.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././opaque_token.mod | |
| -> NMODL .././ptr.mod | |
| Translating opaque_token.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp | |
| Translating ptr.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1263/1922] Generating datahandle/datahandle_tests/test/datahandle/test_1.py | |
| [1264/1922] Generating datahandle/datahandle_tests/test/datahandle/test_token.py | |
| [1265/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.inc | |
| [1266/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.mod | |
| [1267/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial_pp.mod | |
| [1268/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/bacur.mod | |
| [1269/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/banocur.mod | |
| [1270/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/fornetcon.mod | |
| [1271/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/green.mod | |
| [1272/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/invlfire.mod | |
| [1273/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/natrans.mod | |
| [1274/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/netmove.mod | |
| [1275/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/noisychan.mod | |
| [1276/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/red.mod | |
| [1277/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/sample.mod | |
| [1278/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/unitstest.mod | |
| [1279/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/version_macros.mod | |
| [1280/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange.mod | |
| [1281/1922] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange2.mod | |
| [1282/1922] Building special[-core] for test group coverage_tests | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51 | |
| cfiles = | |
| Mod files: "./ppxsrc.mod" | |
| MODOBJS= ./ppxsrc.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././ppxsrc.mod | |
| Translating ppxsrc.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1283/1922] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json | |
| [1284/1922] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py | |
| [1285/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod | |
| [1286/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod | |
| [1287/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod | |
| [1288/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod | |
| [1289/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod | |
| [1290/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod | |
| [1291/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod | |
| [1292/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod | |
| [1293/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod | |
| [1294/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod | |
| [1295/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod | |
| [1296/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod | |
| [1297/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod | |
| [1298/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod | |
| [1299/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod | |
| [1300/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod | |
| [1301/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod | |
| [1302/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod | |
| [1303/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod | |
| [1304/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod | |
| [1305/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod | |
| [1306/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod | |
| [1307/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod | |
| [1308/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| [1309/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod | |
| [1310/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod | |
| [1311/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod | |
| [1312/1922] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod | |
| [1313/1922] Building special[-core] for test group pytest | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c | |
| cfiles = | |
| Mod files: "./mcna.mod" | |
| MODOBJS= ./mcna.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././mcna.mod | |
| Translating mcna.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1314/1922] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json | |
| [1315/1922] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py | |
| [1316/1922] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod | |
| [1317/1922] Building special[-core] for test group parallel | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100 | |
| cfiles = | |
| Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
| MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o | |
| -> NMODL .././follower.mod | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././gap.mod | |
| -> NMODL .././name_clashes.mod | |
| Translating name_clashes.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp | |
| Thread Safe | |
| -> NMODL .././unitstest.mod | |
| Translating gap.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp | |
| Thread Safe | |
| -> NMODL .././version_macros.mod | |
| Translating follower.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp | |
| Translating unitstest.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp | |
| Translating version_macros.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1318/1922] Generating parallel/subworld/test/parallel_tests/test_subworld.py | |
| [1319/1922] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py | |
| [1320/1922] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py | |
| [1321/1922] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py | |
| [1322/1922] Generating parallel/bas/test/parallel_tests/test_bas.py | |
| [1323/1922] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py | |
| [1324/1922] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json | |
| [1325/1922] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py | |
| [1326/1922] Generating ../../nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/halfgap.mod | |
| [1327/1922] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/node.cpp.o | |
| [1328/1922] Linking CXX executable bin/test/testneuron | |
| [1329/1922] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod | |
| [1330/1922] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod | |
| [1331/1922] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod | |
| [1332/1922] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod | |
| [1333/1922] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod | |
| [1334/1922] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod | |
| [1335/1922] Building special[-core] for test group hoctests | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad | |
| cfiles = | |
| Mod files: "./atest.mod" "./rand.mod" "./rand_art.mod" "./rand_pp.mod" "./sdata.mod" "./sdata_pp.mod" "./sdata_ppts.mod" "./sdata_ts.mod" | |
| MODOBJS= ./atest.o ./rand.o ./rand_art.o ./rand_pp.o ./sdata.o ./sdata_pp.o ./sdata_ppts.o ./sdata_ts.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././atest.mod | |
| -> NMODL .././rand.mod | |
| -> NMODL .././rand_art.mod | |
| Translating rand.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp | |
| Thread Safe | |
| Translating rand_art.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp | |
| Thread Safe | |
| -> NMODL .././rand_pp.mod | |
| -> NMODL .././sdata.mod | |
| Translating atest.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp | |
| Thread Safe | |
| -> NMODL .././sdata_pp.mod | |
| Translating sdata.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp | |
| INCLUDEing sdata.inc | |
| Notice: Use of POINTER is not thread safe. | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././sdata_ppts.mod | |
| Translating rand_pp.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp | |
| Thread Safe | |
| -> NMODL .././sdata_ts.mod | |
| Translating sdata_pp.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp | |
| INCLUDEing sdata.inc | |
| Notice: Use of POINTER is not thread safe. | |
| Notice: VERBATIM blocks are not thread safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp | |
| Translating sdata_ppts.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp | |
| INCLUDEing sdata.inc | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp | |
| Translating sdata_ts.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp | |
| INCLUDEing sdata.inc | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1336/1922] Generating hoctests/test_loadbal_hoc/expect_err.hoc | |
| [1337/1922] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc | |
| [1338/1922] Generating hoctests/test_random_hoc/expect_err.hoc | |
| [1339/1922] Generating hoctests/test_random_hoc/tests/test_random.hoc | |
| [1340/1922] Generating hoctests/test_random_hoc/tests/test_random.json | |
| [1341/1922] Generating hoctests/perf1_hoc/expect_err.hoc | |
| [1342/1922] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc | |
| [1343/1922] Generating hoctests/test1_hoc/expect_err.hoc | |
| [1344/1922] Generating hoctests/test1_hoc/vardimtests/test1.hoc | |
| [1345/1922] Generating hoctests/test2_hoc/expect_err.hoc | |
| [1346/1922] Generating hoctests/test2_hoc/vardimtests/test2.hoc | |
| [1347/1922] Generating hoctests/test3_hoc/expect_err.hoc | |
| [1348/1922] Generating hoctests/test3_hoc/vardimtests/test3.hoc | |
| [1349/1922] Generating hoctests/test4_hoc/expect_err.hoc | |
| [1350/1922] Generating hoctests/test4_hoc/vardimtests/test4.hoc | |
| [1351/1922] Generating hoctests/test5_hoc/expect_err.hoc | |
| [1352/1922] Generating hoctests/test5_hoc/vardimtests/test5.hoc | |
| [1353/1922] Generating hoctests/test6_hoc/expect_err.hoc | |
| [1354/1922] Generating hoctests/test6_hoc/vardimtests/test6.hoc | |
| [1355/1922] Generating hoctests/test7_hoc/expect_err.hoc | |
| [1356/1922] Generating hoctests/test7_hoc/vardimtests/test7.hoc | |
| [1357/1922] Generating hoctests/test8_hoc/expect_err.hoc | |
| [1358/1922] Generating hoctests/test8_hoc/vardimtests/test8.hoc | |
| [1359/1922] Generating hoctests/test9_hoc/expect_err.hoc | |
| [1360/1922] Generating hoctests/test9_hoc/vardimtests/test9.hoc | |
| [1361/1922] Generating hoctests/test_bbss_py/tests/test_bbss.py | |
| [1362/1922] Generating hoctests/test_cvinterp_py/tests/test_cvinterp.py | |
| [1363/1922] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py | |
| [1364/1922] Generating hoctests/test_hoc_class_instance_py/tests/test_hoc_class_instance.py | |
| [1365/1922] Generating hoctests/test_hocmech_py/tests/test_hocmech.py | |
| [1366/1922] Generating hoctests/test_kschan_py/tests/test_kschan.json | |
| [1367/1922] Generating hoctests/test_kschan_py/tests/test_kschan.py | |
| [1368/1922] Generating hoctests/test_legacy_setpointer_py/tests/test_legacy_setpointer.py | |
| [1369/1922] Generating hoctests/test_mechfunc_py/tests/test_mechfunc.py | |
| [1370/1922] Generating hoctests/test_mechstd_py/tests/test_mechstd.py | |
| [1371/1922] Generating hoctests/test_mode_py/tests/test_mode.py | |
| [1372/1922] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json | |
| [1373/1922] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py | |
| [1374/1922] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py | |
| [1375/1922] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.json | |
| [1376/1922] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.py | |
| [1377/1922] Generating hoctests/test_random_py/tests/test_random.json | |
| [1378/1922] Generating hoctests/test_random_py/tests/test_random.py | |
| [1379/1922] Generating hoctests/test_setdata_py/tests/test_setdata.py | |
| [1380/1922] Generating hoctests/test_shape_py/tests/test_shape.py | |
| [1381/1922] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py | |
| [1382/1922] Generating hoctests/test1_py/vardimtests/test1.py | |
| [1383/1922] Generating hoctests/test2_py/vardimtests/test2.py | |
| [1384/1922] Generating hoctests/test9_py/vardimtests/test9.py | |
| [1385/1922] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfire.mod | |
| [1386/1922] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfiresha.mod | |
| [1387/1922] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfirestats.mod | |
| [1388/1922] Building special[-core] for test group nmodl_tests | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5 | |
| cfiles = | |
| Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod" | |
| MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././cadif.mod | |
| -> NMODL .././disc.mod | |
| -> NMODL .././fornetcon.mod | |
| Translating cadif.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp | |
| Translating fornetcon.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp | |
| Thread Safe | |
| -> NMODL .././hhwatch.mod | |
| Translating disc.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp | |
| Thread Safe | |
| -> NMODL .././k3st.mod | |
| Notice: DISCRETE is not thread safe. | |
| Notice: This mechanism cannot be used with CVODE | |
| -> NMODL .././table.mod | |
| Translating hhwatch.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp | |
| Thread Safe | |
| Translating table.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp | |
| Thread Safe | |
| -> NMODL .././variabletypes.mod | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp | |
| Translating k3st.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp | |
| NEURON's CVode method ignores conservation | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp | |
| Translating variabletypes.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1389/1922] Generating nmodl_tests/test_table/test/nmodl/test_table.py | |
| [1390/1922] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py | |
| [1391/1922] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py | |
| [1392/1922] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py | |
| [1393/1922] Generating nmodl_tests/test_random/test/nmodl/test_random.py | |
| [1394/1922] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.mod | |
| [1395/1922] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.py | |
| [1396/1922] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py | |
| [1397/1922] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py | |
| [1398/1922] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py | |
| [1399/1922] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py | |
| [1400/1922] Building special[-core] for test group external_ringtest_nrn | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295 | |
| cfiles = | |
| Mod files: "./halfgap.mod" | |
| MODOBJS= ./halfgap.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././halfgap.mod | |
| Translating halfgap.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1401/1922] Generating ../../external_ringtest_nrn/optim_node_order/cell.hoc | |
| [1402/1922] Generating ../../external_ringtest_nrn/optim_node_order/args.py | |
| [1403/1922] Generating ../../external_ringtest_nrn/optim_node_order/celluniform.hoc | |
| [1404/1922] Generating ../../external_ringtest_nrn/optim_node_order/commonutils.py | |
| [1405/1922] Generating ../../external_ringtest_nrn/optim_node_order/ranparm.py | |
| [1406/1922] Generating ../../external_ringtest_nrn/optim_node_order/ring.py | |
| [1407/1922] Generating ../../external_ringtest_nrn/optim_node_order/ringtest.py | |
| [1408/1922] Generating ../../external_ringtest_nrn/optim_node_order/ringuniform.py | |
| [1409/1922] Generating ../../external_ringtest_nrn/optim_node_order/settings.py | |
| [1410/1922] Generating ../../external_ringtest_nrn/optim_node_order/test_optimize_node_order.py | |
| [1411/1922] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release | |
| cfiles = | |
| Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
| MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL ../cabpump.mod | |
| -> NMODL ../cachan1.mod | |
| -> NMODL ../camchan.mod | |
| Translating cabpump.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp | |
| Translating cachan1.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp | |
| Thread Safe | |
| -> NMODL ../capump.mod | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| -> NMODL ../invlfire.mod | |
| Translating camchan.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp | |
| Thread Safe | |
| -> NMODL ../khhchan.mod | |
| Translating khhchan.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp | |
| Thread Safe | |
| -> NMODL ../nacaex.mod | |
| Translating capump.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp | |
| Thread Safe | |
| -> NMODL ../nachan.mod | |
| Translating invlfire.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp | |
| Thread Safe | |
| -> NMODL ../release.mod | |
| Translating nachan.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp | |
| Translating release.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp | |
| Thread Safe | |
| Translating nacaex.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1412/1922] Building special[-core] for test group pytest_coreneuron | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0 | |
| cfiles = | |
| Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
| MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././follower.mod | |
| -> NMODL .././gap.mod | |
| -> NMODL .././name_clashes.mod | |
| Translating name_clashes.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp | |
| Thread Safe | |
| -> NMODL .././unitstest.mod | |
| Translating follower.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp | |
| Translating gap.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././version_macros.mod | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp | |
| Translating unitstest.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp | |
| Translating version_macros.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1413/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py | |
| [1414/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py | |
| [1415/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py | |
| [1416/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py | |
| [1417/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_coreneuron_configuration.py | |
| [1418/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py | |
| [1419/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py | |
| [1420/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py | |
| [1421/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_imem.py | |
| [1422/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py | |
| [1423/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py | |
| [1424/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py | |
| [1425/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py | |
| [1426/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py | |
| [1427/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py | |
| [1428/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py | |
| [1429/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json | |
| [1430/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py | |
| [1431/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py | |
| [1432/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py | |
| [1433/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py | |
| [1434/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py | |
| [1435/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py | |
| [1436/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py | |
| [1437/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py | |
| [1438/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py | |
| [1439/1922] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py | |
| [1440/1922] Building special[-core] for test group external_ringtest | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff | |
| cfiles = | |
| Mod files: "./halfgap.mod" | |
| MODOBJS= ./halfgap.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././halfgap.mod | |
| Translating halfgap.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1441/1922] Generating ../../external_ringtest/neuron/args.py | |
| [1442/1922] Generating ../../external_ringtest/neuron/cell.hoc | |
| [1443/1922] Generating ../../external_ringtest/neuron/celluniform.hoc | |
| [1444/1922] Generating ../../external_ringtest/neuron/commonutils.py | |
| [1445/1922] Generating ../../external_ringtest/neuron/ranparm.py | |
| [1446/1922] Generating ../../external_ringtest/neuron/ring.py | |
| [1447/1922] Generating ../../external_ringtest/neuron/ringtest.py | |
| [1448/1922] Generating ../../external_ringtest/neuron/ringuniform.py | |
| [1449/1922] Generating ../../external_ringtest/neuron/settings.py | |
| [1450/1922] Generating ../../external_ringtest/neuron/test_optimize_node_order.py | |
| [1451/1922] Generating ../../external_ringtest/neuron_mpi/args.py | |
| [1452/1922] Generating ../../external_ringtest/neuron_mpi/cell.hoc | |
| [1453/1922] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc | |
| [1454/1922] Generating ../../external_ringtest/neuron_mpi/commonutils.py | |
| [1455/1922] Generating ../../external_ringtest/neuron_mpi/ranparm.py | |
| [1456/1922] Generating ../../external_ringtest/neuron_mpi/ring.py | |
| [1457/1922] Generating ../../external_ringtest/neuron_mpi/ringtest.py | |
| [1458/1922] Generating ../../external_ringtest/neuron_mpi/ringuniform.py | |
| [1459/1922] Generating ../../external_ringtest/neuron_mpi/test_optimize_node_order.py | |
| [1460/1922] Generating ../../external_ringtest/neuron_mpi/settings.py | |
| [1461/1922] Generating ../../external_ringtest/neuron_mpi_python/args.py | |
| [1462/1922] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc | |
| [1463/1922] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc | |
| [1464/1922] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py | |
| [1465/1922] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py | |
| [1466/1922] Generating ../../external_ringtest/neuron_mpi_python/ring.py | |
| [1467/1922] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py | |
| [1468/1922] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py | |
| [1469/1922] Generating ../../external_ringtest/neuron_mpi_python/settings.py | |
| [1470/1922] Generating ../../external_ringtest/neuron_mpi_python/test_optimize_node_order.py | |
| [1471/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py | |
| [1472/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc | |
| [1473/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc | |
| [1474/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py | |
| [1475/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py | |
| [1476/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py | |
| [1477/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py | |
| [1478/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py | |
| [1479/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py | |
| [1480/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc | |
| [1481/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/test_optimize_node_order.py | |
| [1482/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py | |
| [1483/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc | |
| [1484/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py | |
| [1485/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py | |
| [1486/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py | |
| [1487/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py | |
| [1488/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py | |
| [1489/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py | |
| [1490/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi/test_optimize_node_order.py | |
| [1491/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py | |
| [1492/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc | |
| [1493/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc | |
| [1494/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py | |
| [1495/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py | |
| [1496/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py | |
| [1497/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py | |
| [1498/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py | |
| [1499/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py | |
| [1500/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/test_optimize_node_order.py | |
| [1501/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py | |
| [1502/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc | |
| [1503/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc | |
| [1504/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py | |
| [1505/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py | |
| [1506/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py | |
| [1507/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py | |
| [1508/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py | |
| [1509/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py | |
| [1510/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/test_optimize_node_order.py | |
| [1511/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py | |
| [1512/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc | |
| [1513/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc | |
| [1514/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py | |
| [1515/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py | |
| [1516/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py | |
| [1517/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py | |
| [1518/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py | |
| [1519/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py | |
| [1520/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/test_optimize_node_order.py | |
| [1521/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py | |
| [1522/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc | |
| [1523/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc | |
| [1524/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py | |
| [1525/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py | |
| [1526/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py | |
| [1527/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py | |
| [1528/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py | |
| [1529/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py | |
| [1530/1922] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/test_optimize_node_order.py | |
| [1531/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/args.py | |
| [1532/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/cell.hoc | |
| [1533/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/commonutils.py | |
| [1534/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/celluniform.hoc | |
| [1535/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ranparm.py | |
| [1536/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ring.py | |
| [1537/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ringtest.py | |
| [1538/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/settings.py | |
| [1539/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/test_optimize_node_order.py | |
| [1540/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ringuniform.py | |
| [1541/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/args.py | |
| [1542/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/cell.hoc | |
| [1543/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/celluniform.hoc | |
| [1544/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/commonutils.py | |
| [1545/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ranparm.py | |
| [1546/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ring.py | |
| [1547/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ringtest.py | |
| [1548/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ringuniform.py | |
| [1549/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/settings.py | |
| [1550/1922] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/test_optimize_node_order.py | |
| [1551/1922] Building special[-core] for test group tqperf | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951 | |
| cfiles = | |
| Mod files: "./invlfire.mod" "./invlfiresha.mod" "./invlfirestats.mod" | |
| MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build INCFLAGS=-I/opt/homebrew/Cellar/openssl@3/3.2.0_1/include LINKFLAGS=/opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: Can not inline function call to specify_invl | |
| [NMODL] [warning] :: Can not inline function call to specify_invl | |
| [NMODL] [warning] :: Can not inline function call to specify_invl | |
| [NMODL] [warning] :: Can not inline function call to specify_invl | |
| [NMODL] [warning] :: Can not inline function call to specify_invl | |
| [NMODL] [warning] :: Can not inline function call to specify_invl | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| arm64/corenrn/mod2c/invlfiresha.cpp:313:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations] | |
| int status = SHA1_Init((SHA_CTX*)(*ctx)); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here | |
| OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
| # define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
| # define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
| ^ | |
| arm64/corenrn/mod2c/invlfiresha.cpp:318:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations] | |
| int status = SHA1_Update((SHA_CTX*)ctx, data, len); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here | |
| OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
| # define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
| # define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
| ^ | |
| arm64/corenrn/mod2c/invlfiresha.cpp:329:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations] | |
| int status = SHA1_Final(u.md, (SHA_CTX*)ctx); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here | |
| OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
| # define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
| # define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
| ^ | |
| 3 warnings generated. | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././invlfire.mod | |
| -> NMODL .././invlfiresha.mod | |
| -> NMODL .././invlfirestats.mod | |
| Translating invlfire.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp | |
| Translating invlfirestats.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp | |
| Translating invlfiresha.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:369:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations] | |
| int status = SHA1_Init((SHA_CTX*)(*ctx)); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here | |
| OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
| # define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
| # define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
| ^ | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:374:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations] | |
| int status = SHA1_Update((SHA_CTX*)ctx, data, len); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here | |
| OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
| # define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
| # define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
| ^ | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:385:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations] | |
| int status = SHA1_Final(u.md, (SHA_CTX*)ctx); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here | |
| OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
| # define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
| # define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
| ^ | |
| 3 warnings generated. | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/./special" LDFLAGS are: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib | |
| Successfully created arm64/special | |
| [1552/1922] Generating ../../tqperf/coreneuron_special/init.hoc | |
| [1553/1922] Generating ../../tqperf/coreneuron_special/extracell.hoc | |
| [1554/1922] Generating ../../tqperf/coreneuron_special/invl.hoc | |
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| [1586/1922] Generating ../../tqperf/coreneuron_python/table.hoc | |
| [1587/1922] Generating ../../tqperf/coreneuron_python/test1.py | |
| [1588/1922] Generating ../../tqperf/coreneuron_python/tperf.hoc | |
| [1589/1922] Generating ../../tqperf/coreneuron_python/tperfnew.hoc | |
| [1590/1922] Building special[-core] for test group testcorenrn_bbcore | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876 | |
| cfiles = | |
| Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod" | |
| MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././Gfluct3.mod | |
| -> NMODL .././hhderiv.mod | |
| -> NMODL .././hhkin.mod | |
| Translating hhkin.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp | |
| Translating hhderiv.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp | |
| Thread Safe | |
| Translating Gfluct3.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp | |
| -> NMODL .././hhwatch.mod | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././nacum.mod | |
| -> NMODL .././vecevent.mod | |
| Translating hhwatch.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp | |
| Translating vecevent.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Translating nacum.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1591/1922] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc | |
| [1592/1922] Generating ../../testcorenrn_bbcore/neuron/common.hoc | |
| [1593/1922] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc | |
| [1594/1922] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc | |
| [1595/1922] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1596/1922] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc | |
| [1597/1922] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc | |
| [1598/1922] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc | |
| [1599/1922] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc | |
| [1600/1922] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc | |
| [1601/1922] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1602/1922] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc | |
| [1603/1922] Generating ../../testcorenrn_conc/neuron/defvar.hoc | |
| [1604/1922] Generating ../../testcorenrn_conc/neuron/common.hoc | |
| [1605/1922] Generating ../../testcorenrn_conc/neuron/testconc.hoc | |
| [1606/1922] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc | |
| [1607/1922] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc | |
| [1608/1922] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc | |
| [1609/1922] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1610/1922] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1611/1922] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc | |
| [1612/1922] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc | |
| [1613/1922] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc | |
| [1614/1922] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc | |
| [1615/1922] Generating ../../testcorenrn_deriv/neuron/common.hoc | |
| [1616/1922] Generating ../../testcorenrn_deriv/neuron/defvar.hoc | |
| [1617/1922] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc | |
| [1618/1922] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc | |
| [1619/1922] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc | |
| [1620/1922] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc | |
| [1621/1922] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1622/1922] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc | |
| [1623/1922] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc | |
| [1624/1922] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1625/1922] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc | |
| [1626/1922] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc | |
| [1627/1922] Generating ../../testcorenrn_gf/neuron/common.hoc | |
| [1628/1922] Generating ../../testcorenrn_gf/neuron/defvar.hoc | |
| [1629/1922] Generating ../../testcorenrn_gf/neuron/testgf.hoc | |
| [1630/1922] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc | |
| [1631/1922] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc | |
| [1632/1922] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc | |
| [1633/1922] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc | |
| [1634/1922] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1635/1922] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1636/1922] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc | |
| [1637/1922] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc | |
| [1638/1922] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc | |
| [1639/1922] Generating ../../testcorenrn_kin/neuron/common.hoc | |
| [1640/1922] Generating ../../testcorenrn_kin/neuron/testkin.hoc | |
| [1641/1922] Generating ../../testcorenrn_kin/neuron/defvar.hoc | |
| [1642/1922] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc | |
| [1643/1922] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc | |
| [1644/1922] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc | |
| [1645/1922] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1646/1922] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1647/1922] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc | |
| [1648/1922] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc | |
| [1649/1922] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc | |
| [1650/1922] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc | |
| [1651/1922] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc | |
| [1652/1922] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc | |
| [1653/1922] Generating ../../testcorenrn_patstim/neuron/common.hoc | |
| [1654/1922] Generating ../../testcorenrn_patstim/neuron/defvar.hoc | |
| [1655/1922] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc | |
| [1656/1922] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc | |
| [1657/1922] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc | |
| [1658/1922] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc | |
| [1659/1922] Generating ../../testcorenrn_vecplay/neuron/common.hoc | |
| [1660/1922] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc | |
| [1661/1922] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc | |
| [1662/1922] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc | |
| [1663/1922] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc | |
| [1664/1922] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc | |
| [1665/1922] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc | |
| [1666/1922] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1667/1922] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1668/1922] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc | |
| [1669/1922] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc | |
| [1670/1922] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc | |
| [1671/1922] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc | |
| [1672/1922] Generating ../../testcorenrn_vecevent/neuron/common.hoc | |
| [1673/1922] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc | |
| [1674/1922] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc | |
| [1675/1922] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc | |
| [1676/1922] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc | |
| [1677/1922] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1678/1922] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc | |
| [1679/1922] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc | |
| [1680/1922] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1681/1922] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc | |
| [1682/1922] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc | |
| [1683/1922] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc | |
| [1684/1922] Generating ../../testcorenrn_watch/neuron/common.hoc | |
| [1685/1922] Generating ../../testcorenrn_watch/neuron/defvar.hoc | |
| [1686/1922] Generating ../../testcorenrn_watch/neuron/testwatch.hoc | |
| [1687/1922] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc | |
| [1688/1922] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc | |
| [1689/1922] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc | |
| [1690/1922] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1691/1922] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1692/1922] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc | |
| [1693/1922] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc | |
| [1694/1922] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc | |
| [1695/1922] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc | |
| [1696/1922] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc | |
| [1697/1922] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc | |
| [1698/1922] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc | |
| [1699/1922] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc | |
| [1700/1922] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc | |
| [1701/1922] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc | |
| [1702/1922] Building special[-core] for test group coreneuron_modtests | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7 | |
| cfiles = | |
| Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./green.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./noisychan.mod" "./red.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod" "./watchrange2.mod" | |
| MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./green.o ./invlfire.o ./natrans.o ./netmove.o ./noisychan.o ./red.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o ./watchrange2.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
| [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
| [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././axial.mod | |
| -> NMODL .././axial_pp.mod | |
| -> NMODL .././bacur.mod | |
| Translating axial.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial.cpp | |
| INCLUDEing axial.inc | |
| Thread Safe | |
| -> NMODL .././banocur.mod | |
| Translating bacur.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/bacur.cpp | |
| Thread Safe | |
| -> NMODL .././fornetcon.mod | |
| Translating axial_pp.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial_pp.cpp | |
| INCLUDEing axial.inc | |
| Thread Safe | |
| -> NMODL .././green.mod | |
| Translating fornetcon.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/fornetcon.cpp | |
| Thread Safe | |
| -> NMODL .././invlfire.mod | |
| Translating green.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/green.cpp | |
| Warning: dt undefined. (declared within VERBATIM?) | |
| Thread Safe | |
| -> NMODL .././natrans.mod | |
| Translating banocur.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/banocur.cpp | |
| Notice: This mechanism cannot be used with CVODE | |
| Thread Safe | |
| -> NMODL .././netmove.mod | |
| Translating invlfire.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/invlfire.cpp | |
| Thread Safe | |
| -> NMODL .././noisychan.mod | |
| Translating natrans.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/natrans.cpp | |
| Thread Safe | |
| Translating netmove.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/netmove.cpp | |
| Thread Safe | |
| -> NMODL .././red.mod | |
| -> NMODL .././sample.mod | |
| Translating red.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/red.cpp | |
| Thread Safe | |
| -> NMODL .././unitstest.mod | |
| Translating noisychan.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/noisychan.cpp | |
| Thread Safe | |
| -> NMODL .././version_macros.mod | |
| Translating sample.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/sample.cpp | |
| Thread Safe | |
| -> NMODL .././watchrange.mod | |
| Translating unitstest.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/unitstest.cpp | |
| Thread Safe | |
| -> NMODL .././watchrange2.mod | |
| Translating version_macros.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/version_macros.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial.cpp | |
| Translating watchrange.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial_pp.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/bacur.cpp | |
| Translating watchrange2.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange2.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/banocur.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/fornetcon.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/green.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/invlfire.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/natrans.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/netmove.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/noisychan.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/red.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/sample.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/unitstest.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/version_macros.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange2.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1703/1922] Generating coreneuron_modtests/version_macros/test/pytest_coreneuron/test_version_macros.py | |
| [1704/1922] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py | |
| [1705/1922] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc | |
| [1706/1922] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py | |
| [1707/1922] Generating coreneuron_modtests/inputpresyn_py/test/coreneuron/test_inputpresyn.py | |
| [1708/1922] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py | |
| [1709/1922] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py | |
| [1710/1922] Generating coreneuron_modtests/fast_imem_py_cpu/test/pytest_coreneuron/test_fast_imem.py | |
| [1711/1922] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py | |
| [1712/1922] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py | |
| [1713/1922] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py | |
| [1714/1922] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py | |
| [1715/1922] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py | |
| [1716/1922] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py | |
| [1717/1922] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py | |
| [1718/1922] Generating coreneuron_modtests/test_nmodlrandom_py_cpu/test/coreneuron/test_nmodlrandom.py | |
| [1719/1922] Generating coreneuron_modtests/test_nmodlrandom_syntax_py_cpu/test/coreneuron/test_nmodlrandom_syntax.py | |
| [1720/1922] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py | |
| [1721/1922] Generating coreneuron_modtests/array_variable_transfer_run_mode_0_py_cpu/test/coreneuron/test_array_variables_transfer.py | |
| [1722/1922] Generating coreneuron_modtests/array_variable_transfer_run_mode_1_py_cpu/test/coreneuron/test_array_variables_transfer.py | |
| [1723/1922] Generating coreneuron_modtests/array_variable_transfer_run_mode_2_py_cpu/test/coreneuron/test_array_variables_transfer.py | |
| [1724/1922] Generating coreneuron_modtests/array_variable_transfer_file_mode_py_cpu/test/coreneuron/test_array_variables_transfer.py | |
| [1725/1922] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py | |
| [1726/1922] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py | |
| [1727/1922] Building special[-core] for test group example_nmodl | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2 | |
| cfiles = | |
| Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod" | |
| MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././argpass.mod | |
| -> NMODL .././cabpump.mod | |
| -> NMODL .././cachan.mod | |
| Translating argpass.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././cacum.mod | |
| Translating cabpump.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| Translating cacum.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp | |
| Thread Safe | |
| -> NMODL .././cacur.mod | |
| Translating cachan.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp | |
| Thread Safe | |
| -> NMODL .././cadif.mod | |
| -> NMODL .././cadifusl.mod | |
| Translating cacur.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp | |
| Thread Safe | |
| Translating cadif.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp | |
| -> NMODL .././cagk.mod | |
| Thread Safe | |
| -> NMODL .././cagkftab.mod | |
| Translating cadifusl.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| -> NMODL .././capmp.mod | |
| Translating cagk.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp | |
| Thread Safe | |
| -> NMODL .././expsynspine.mod | |
| Translating cagkftab.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp | |
| Thread Safe | |
| Translating capmp.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp | |
| NEURON's CVode method ignores conservation | |
| Thread Safe | |
| -> NMODL .././fh.mod | |
| -> NMODL .././fit1.mod | |
| Translating expsynspine.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp | |
| Notice: LINEAR is not thread safe. | |
| -> NMODL .././gap.mod | |
| Translating fit1.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././hh1.mod | |
| Translating fh.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp | |
| INCLUDEing standard.inc | |
| Notice: Assignment to the GLOBAL variable, "inf", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "tau", is not thread safe | |
| -> NMODL .././hhvect.mod | |
| Translating gap.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| -> NMODL .././inatest.mod | |
| Translating hhvect.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp | |
| Notice: This mechanism cannot be used with CVODE | |
| Thread Safe | |
| Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON. | |
| Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON. | |
| Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON. | |
| -> NMODL .././ionleak.mod | |
| Translating hh1.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp | |
| Notice: This mechanism cannot be used with CVODE | |
| Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "minf", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe | |
| Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON. | |
| Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON. | |
| Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON. | |
| -> NMODL .././nacum.mod | |
| Translating inatest.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp | |
| Thread Safe | |
| -> NMODL .././nacur.mod | |
| Translating ionleak.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp | |
| Thread Safe | |
| -> NMODL .././nadifl.mod | |
| Translating nacum.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp | |
| Thread Safe | |
| -> NMODL .././nonlin.mod | |
| Translating nacur.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp | |
| Thread Safe | |
| -> NMODL .././obj_ex.mod | |
| Translating nadifl.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp | |
| Thread Safe | |
| -> NMODL .././order.mod | |
| -> NMODL .././passiv.mod | |
| Translating nonlin.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp | |
| Notice: NONLINEAR is not thread safe. | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| -> NMODL .././rchan.mod | |
| Translating obj_ex.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp | |
| Thread Safe | |
| -> NMODL .././stim1.mod | |
| Translating order.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp | |
| Thread Safe | |
| -> NMODL .././str.mod | |
| Translating rchan.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp | |
| Notice: normrand is not thread safe | |
| Notice: This mechanism cannot be used with CVODE | |
| -> NMODL .././syn1.mod | |
| Translating passiv.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp | |
| Thread Safe | |
| -> NMODL .././synpre.mod | |
| Translating stim1.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp | |
| Thread Safe | |
| -> NMODL .././trivial.mod | |
| Translating str.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././tstdarray.mod | |
| Translating syn1.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp | |
| Thread Safe | |
| -> NMODL .././tstextrn.mod | |
| Translating synpre.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp | |
| Translating trivial.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| Notice: VERBATIM blocks are not thread safe | |
| Notice: This mechanism cannot be used with CVODE | |
| -> NMODL .././tstpnt1.mod | |
| -> NMODL .././tstpnt2.mod | |
| Translating tstdarray.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp | |
| Thread Safe | |
| -> NMODL .././tstvec.mod | |
| Translating tstextrn.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp | |
| Notice: Use of EXTERNAL is not thread safe. | |
| -> NMODL .././vclmp1.mod | |
| Translating tstpnt2.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| -> NMODL .././vlag.mod | |
| Translating tstpnt1.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp | |
| Translating tstvec.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp | |
| Translating vclmp1.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| Notice: This mechanism cannot be used with CVODE | |
| Notice: LINEAR is not thread safe. | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp | |
| Translating vlag.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1728/1922] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc | |
| [1729/1922] Generating example_nmodl/cabpump_hoc/cabpump.hoc | |
| [1730/1922] Generating example_nmodl/cachan_hoc/cachan.hoc | |
| [1731/1922] Generating example_nmodl/cadif_hoc/cadif.hoc | |
| [1732/1922] Generating example_nmodl/cadif_hoc/cadif.ses | |
| [1733/1922] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc | |
| [1734/1922] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc | |
| [1735/1922] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc | |
| [1736/1922] Generating example_nmodl/cagk_hoc/cagk.hoc | |
| [1737/1922] Generating example_nmodl/capmp_hoc/capmp.hoc | |
| [1738/1922] Generating example_nmodl/cv_hoc/cv.hoc | |
| [1739/1922] Generating example_nmodl/fit1_hoc/fit1.hoc | |
| [1740/1922] Generating example_nmodl/gap_hoc/gap.hoc | |
| [1741/1922] Generating example_nmodl/fh_hoc/fh.hoc | |
| [1742/1922] Generating example_nmodl/hh1_hoc/hh1.hoc | |
| [1743/1922] Generating example_nmodl/hhvect_hoc/hhvect.hoc | |
| [1744/1922] Generating example_nmodl/nacum_hoc/nacum.hoc | |
| [1745/1922] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc | |
| [1746/1922] Generating example_nmodl/nadifl1_hoc/nadifl1.ses | |
| [1747/1922] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc | |
| [1748/1922] Generating example_nmodl/nadifl2_hoc/nadifl2.ses | |
| [1749/1922] Generating example_nmodl/nadifl3_hoc/nadifl3.ses | |
| [1750/1922] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc | |
| [1751/1922] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc | |
| [1752/1922] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc | |
| [1753/1922] Generating example_nmodl/nadifl4_hoc/nadifl4.ses | |
| [1754/1922] Generating example_nmodl/order_hoc/order.hoc | |
| [1755/1922] Generating example_nmodl/passiv_hoc/passiv.hoc | |
| [1756/1922] Generating example_nmodl/syn1_hoc/syn1.hoc | |
| [1757/1922] Generating example_nmodl/stim1_hoc/stim1.hoc | |
| [1758/1922] Generating example_nmodl/synpre_hoc/synpre.hoc | |
| [1759/1922] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc | |
| [1760/1922] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc | |
| [1761/1922] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc | |
| [1762/1922] Generating example_nmodl/tstvec_hoc/tstvec.hoc | |
| [1763/1922] Generating example_nmodl/cagkftab_py/cagkftab.py | |
| [1764/1922] Generating example_nmodl/expsynspine_py/expsynspine.py | |
| [1765/1922] Generating example_nmodl/expsynspine_py/expsynspine.ses | |
| [1766/1922] Generating example_nmodl/nonlin_py/nonlin.py | |
| [1767/1922] Generating example_nmodl/tstpnt1_py/tstpnt1.py | |
| [1768/1922] Generating example_nmodl/tstpnt2_py/tstpnt2.py | |
| [1769/1922] Generating example_nmodl/vlag_py/vlag.py | |
| [1770/1922] Building special[-core] for test group reduced_dentate | |
| /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead | |
| cfiles = | |
| Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod" | |
| MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././Aradi_Ca.mod | |
| -> NMODL .././Aradi_CadepK.mod | |
| -> NMODL .././Aradi_KA.mod | |
| Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp | |
| Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp | |
| Thread Safe | |
| -> NMODL .././Aradi_KDRf.mod | |
| Translating Aradi_KA.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././Aradi_KDRs.mod | |
| -> NMODL .././Aradi_Na.mod | |
| Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp | |
| Thread Safe | |
| Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp | |
| Thread Safe | |
| -> NMODL .././CaBK.mod | |
| -> NMODL .././DGC_M.mod | |
| Translating Aradi_Na.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp | |
| Thread Safe | |
| -> NMODL .././DGC_UK.mod | |
| Translating CaBK.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp | |
| Thread Safe | |
| -> NMODL .././DGC_sAHP.mod | |
| Translating DGC_M.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp | |
| Translating DGC_UK.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././Gfluct3.mod | |
| -> NMODL .././LcaMig.mod | |
| Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp | |
| Thread Safe | |
| -> NMODL .././SH_KIn.mod | |
| Translating Gfluct3.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp | |
| Thread Safe | |
| -> NMODL .././SH_na8st.mod | |
| Translating LcaMig.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp | |
| Thread Safe | |
| Translating SH_KIn.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp | |
| -> NMODL .././bgka.mod | |
| Thread Safe | |
| -> NMODL .././ccanl.mod | |
| Translating SH_na8st.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp | |
| NEURON's CVode method ignores conservation | |
| Thread Safe | |
| -> NMODL .././ggap.mod | |
| Translating bgka.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp | |
| Thread Safe | |
| Translating ggap.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp | |
| Thread Safe | |
| -> NMODL .././gskch.mod | |
| Translating ccanl.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp | |
| -> NMODL .././holdingi.mod | |
| Thread Safe | |
| -> NMODL .././hyperde3.mod | |
| -> NMODL .././ichan2.mod | |
| Translating gskch.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp | |
| Thread Safe | |
| -> NMODL .././iconc_Ca.mod | |
| Translating holdingi.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp | |
| Thread Safe | |
| -> NMODL .././kcaPR.mod | |
| Translating hyperde3.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp | |
| Thread Safe | |
| -> NMODL .././na3n.mod | |
| Translating ichan2.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp | |
| Thread Safe | |
| -> NMODL .././nca.mod | |
| Translating iconc_Ca.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp | |
| Thread Safe | |
| -> NMODL .././spines.mod | |
| Translating kcaPR.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp | |
| Translating na3n.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp | |
| Thread Safe | |
| -> NMODL .././tca.mod | |
| Thread Safe | |
| -> NMODL .././vecevent.mod | |
| Translating nca.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp | |
| Translating spines.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp | |
| Translating vecevent.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp | |
| Translating tca.mod into /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp | |
| -> Compiling /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1771/1922] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat | |
| [1772/1922] Generating ../../reduced_dentate/neuron/commonutils.py | |
| [1773/1922] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat | |
| [1774/1922] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat | |
| [1775/1922] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat | |
| [1776/1922] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat | |
| [1777/1922] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat | |
| [1778/1922] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat | |
| [1779/1922] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat | |
| [1780/1922] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat | |
| [1781/1922] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat | |
| [1782/1922] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat | |
| [1783/1922] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat | |
| [1784/1922] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat | |
| [1785/1922] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat | |
| [1786/1922] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat | |
| [1787/1922] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat | |
| [1788/1922] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat | |
| [1789/1922] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat | |
| [1790/1922] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat | |
| [1791/1922] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat | |
| [1792/1922] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat | |
| [1793/1922] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat | |
| [1794/1922] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat | |
| [1795/1922] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat | |
| [1796/1922] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat | |
| [1797/1922] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat | |
| [1798/1922] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat | |
| [1799/1922] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat | |
| [1800/1922] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat | |
| [1801/1922] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat | |
| [1802/1922] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat | |
| [1803/1922] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat | |
| [1804/1922] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat | |
| [1805/1922] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat | |
| [1806/1922] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat | |
| [1807/1922] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat | |
| [1808/1922] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat | |
| [1809/1922] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat | |
| [1810/1922] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat | |
| [1811/1922] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat | |
| [1812/1922] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat | |
| [1813/1922] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat | |
| [1814/1922] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat | |
| [1815/1922] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat | |
| [1816/1922] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat | |
| [1817/1922] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat | |
| [1818/1922] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat | |
| [1819/1922] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat | |
| [1820/1922] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat | |
| [1821/1922] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat | |
| [1822/1922] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat | |
| [1823/1922] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat | |
| [1824/1922] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat | |
| [1825/1922] Generating ../../reduced_dentate/neuron/main.hoc | |
| [1826/1922] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat | |
| [1827/1922] Generating ../../reduced_dentate/neuron/parameters/Control.hoc | |
| [1828/1922] Generating ../../reduced_dentate/neuron/run.hoc | |
| [1829/1922] Generating ../../reduced_dentate/neuron/lib.hoc | |
| [1830/1922] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc | |
| [1831/1922] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc | |
| [1832/1922] Generating ../../reduced_dentate/neuron/templates/DGC.hoc | |
| [1833/1922] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc | |
| [1834/1922] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc | |
| [1835/1922] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc | |
| [1836/1922] Generating ../../reduced_dentate/neuron/templates/Dict.hoc | |
| [1837/1922] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc | |
| [1838/1922] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc | |
| [1839/1922] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc | |
| [1840/1922] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc | |
| [1841/1922] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc | |
| [1842/1922] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc | |
| [1843/1922] Generating ../../reduced_dentate/neuron/templates/Value.hoc | |
| [1844/1922] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc | |
| [1845/1922] Generating ../../reduced_dentate/neuron/templates/defvar.hoc | |
| [1846/1922] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc | |
| [1847/1922] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py | |
| [1848/1922] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat | |
| [1849/1922] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat | |
| [1850/1922] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat | |
| [1851/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat | |
| [1852/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat | |
| [1853/1922] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat | |
| [1854/1922] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat | |
| [1855/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat | |
| [1856/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat | |
| [1857/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat | |
| [1858/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat | |
| [1859/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat | |
| [1860/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat | |
| [1861/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat | |
| [1862/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat | |
| [1863/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat | |
| [1864/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat | |
| [1865/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat | |
| [1866/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat | |
| [1867/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat | |
| [1868/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat | |
| [1869/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat | |
| [1870/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat | |
| [1871/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat | |
| [1872/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat | |
| [1873/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat | |
| [1874/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat | |
| [1875/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat | |
| [1876/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat | |
| [1877/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat | |
| [1878/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat | |
| [1879/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat | |
| [1880/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat | |
| [1881/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat | |
| [1882/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat | |
| [1883/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat | |
| [1884/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat | |
| [1885/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat | |
| [1886/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat | |
| [1887/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat | |
| [1888/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat | |
| [1889/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat | |
| [1890/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat | |
| [1891/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat | |
| [1892/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat | |
| [1893/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat | |
| [1894/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat | |
| [1895/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat | |
| [1896/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat | |
| [1897/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat | |
| [1898/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat | |
| [1899/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat | |
| [1900/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat | |
| [1901/1922] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat | |
| [1902/1922] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc | |
| [1903/1922] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc | |
| [1904/1922] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc | |
| [1905/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc | |
| [1906/1922] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc | |
| [1907/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc | |
| [1908/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc | |
| [1909/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc | |
| [1910/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc | |
| [1911/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc | |
| [1912/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc | |
| [1913/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc | |
| [1914/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc | |
| [1915/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc | |
| [1916/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc | |
| [1917/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc | |
| [1918/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc | |
| [1919/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc | |
| [1920/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc | |
| [1921/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc | |
| [1922/1922] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc | |
| [32;1m$ ccache -vs 2>/dev/null[0;m | |
| Cache directory: /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/ccache | |
| Config file: /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/ccache/ccache.conf | |
| System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf | |
| Stats updated: Thu May 2 07:00:19 2024 | |
| Cacheable calls: 623 / 623 (100.0%) | |
| Hits: 2 / 623 ( 0.32%) | |
| Direct: 1 / 2 (50.00%) | |
| Preprocessed: 1 / 2 (50.00%) | |
| Misses: 621 / 623 (99.68%) | |
| Successful lookups: | |
| Direct: 1 / 623 ( 0.16%) | |
| Preprocessed: 1 / 622 ( 0.16%) | |
| Local storage: | |
| Cache size (GiB): 0.1 / 5.0 ( 2.25%) | |
| Files: 1178 | |
| Hits: 2 / 623 ( 0.32%) | |
| Misses: 621 / 623 (99.68%) | |
| Reads: 1246 | |
| Writes: 1178 | |
| [32;1m$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg[0;m | |
| [32;1m$ cat src/nrnpython/setup.cfg[0;m | |
| [install] | |
| prefix= | |
| [32;1m$ ctest --output-on-failure[0;m | |
| Test project /Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build | |
| Start 238: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 248: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| 1/301 Test #248: testcorenrn_bbcore::coreneuron_cpu_offline::preparation .................. Passed 1.84 sec | |
| Start 254: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 2/301 Test #254: testcorenrn_conc::coreneuron_cpu_offline::preparation .................... Passed 0.66 sec | |
| Start 260: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 3/301 Test #260: testcorenrn_deriv::coreneuron_cpu_offline::preparation ................... Passed 0.57 sec | |
| Start 272: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 4/301 Test #272: testcorenrn_kin::coreneuron_cpu_offline::preparation ..................... Passed 0.49 sec | |
| Start 156: pyinit::nrniv_py3.10_python_check_sys_path::preparation | |
| 5/301 Test #156: pyinit::nrniv_py3.10_python_check_sys_path::preparation .................. Passed 0.04 sec | |
| Start 158: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation | |
| 6/301 Test #158: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ............... Passed 0.04 sec | |
| Start 160: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation | |
| 7/301 Test #160: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................ Passed 0.04 sec | |
| Start 162: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation | |
| 8/301 Test #162: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation ............. Passed 0.04 sec | |
| Start 164: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation | |
| 9/301 Test #164: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ........... Passed 0.04 sec | |
| Start 166: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation | |
| 10/301 Test #166: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........ Passed 0.04 sec | |
| Start 168: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation | |
| 11/301 Test #168: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ........... Passed 0.03 sec | |
| Start 170: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation | |
| 12/301 Test #170: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........ Passed 0.04 sec | |
| Start 172: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation | |
| 13/301 Test #172: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ...... Passed 0.03 sec | |
| Start 174: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation | |
| 14/301 Test #174: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ... Passed 0.04 sec | |
| Start 176: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation | |
| 15/301 Test #176: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation ....... Passed 0.04 sec | |
| Start 178: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation | |
| 16/301 Test #178: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation .... Passed 0.04 sec | |
| Start 180: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation | |
| 17/301 Test #180: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........ Passed 0.03 sec | |
| Start 182: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation | |
| 18/301 Test #182: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation ..... Passed 0.03 sec | |
| Start 184: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation | |
| 19/301 Test #184: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation ....... Passed 0.03 sec | |
| Start 186: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation | |
| 20/301 Test #186: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation .... Passed 0.04 sec | |
| Start 192: pyinit::nrniv_pydef_python_check_sys_path::preparation | |
| 21/301 Test #192: pyinit::nrniv_pydef_python_check_sys_path::preparation ................... Passed 0.03 sec | |
| Start 194: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation | |
| 22/301 Test #194: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................ Passed 0.03 sec | |
| Start 196: pyinit::nrniv_pydef_python_check_sys_prefix::preparation | |
| 23/301 Test #196: pyinit::nrniv_pydef_python_check_sys_prefix::preparation ................. Passed 0.04 sec | |
| Start 198: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation | |
| 24/301 Test #198: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation .............. Passed 0.04 sec | |
| Start 200: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation | |
| 25/301 Test #200: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............ Passed 0.04 sec | |
| Start 202: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation | |
| 26/301 Test #202: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation ......... Passed 0.03 sec | |
| Start 204: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation | |
| 27/301 Test #238: external_ringtest::coreneuron_cpu_mpi_offline::preparation ............... Passed 4.38 sec | |
| Start 266: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| 28/301 Test #204: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............ Passed 0.04 sec | |
| Start 206: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation | |
| 29/301 Test #206: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation ......... Passed 0.04 sec | |
| Start 208: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation | |
| 30/301 Test #208: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation ....... Passed 0.03 sec | |
| Start 210: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation | |
| 31/301 Test #210: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation .... Passed 0.03 sec | |
| Start 212: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation | |
| 32/301 Test #212: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........ Passed 0.03 sec | |
| Start 214: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation | |
| 33/301 Test #214: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation ..... Passed 0.04 sec | |
| Start 216: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation | |
| 34/301 Test #216: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation ......... Passed 0.03 sec | |
| Start 218: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation | |
| 35/301 Test #218: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ...... Passed 0.03 sec | |
| Start 220: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation | |
| 36/301 Test #220: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........ Passed 0.03 sec | |
| Start 222: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation | |
| 37/301 Test #222: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation ..... Passed 0.03 sec | |
| Start 230: external_ringtest::neuron | |
| 38/301 Test #266: testcorenrn_gf::coreneuron_cpu_offline::preparation ...................... Passed 0.73 sec | |
| Start 277: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 39/301 Test #277: testcorenrn_patstim::coreneuron_cpu_offline::preparation ................. Passed 0.68 sec | |
| Start 283: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 40/301 Test #283: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ................. Passed 0.74 sec | |
| Start 295: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 41/301 Test #295: testcorenrn_watch::coreneuron_cpu_offline::preparation ................... Passed 0.47 sec | |
| Start 231: external_ringtest::neuron_mpi | |
| 42/301 Test #231: external_ringtest::neuron_mpi ............................................ Passed 35.42 sec | |
| Start 232: external_ringtest::neuron_mpi_python | |
| 43/301 Test #230: external_ringtest::neuron ................................................ Passed 67.51 sec | |
| Start 244: testcorenrn_bbcore::neuron | |
| 44/301 Test #244: testcorenrn_bbcore::neuron ............................................... Passed 0.53 sec | |
| Start 245: testcorenrn_bbcore::coreneuron_cpu_online | |
| 45/301 Test #245: testcorenrn_bbcore::coreneuron_cpu_online ................................ Passed 1.75 sec | |
| Start 246: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 46/301 Test #246: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ............... Passed 2.13 sec | |
| Start 247: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 47/301 Test #247: testcorenrn_bbcore::coreneuron_cpu_offline ............................... Passed 0.44 sec | |
| Start 250: testcorenrn_conc::neuron | |
| 48/301 Test #250: testcorenrn_conc::neuron ................................................. Passed 0.66 sec | |
| Start 251: testcorenrn_conc::coreneuron_cpu_online | |
| 49/301 Test #251: testcorenrn_conc::coreneuron_cpu_online .................................. Passed 1.88 sec | |
| Start 252: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 50/301 Test #232: external_ringtest::neuron_mpi_python ..................................... Passed 37.87 sec | |
| Start 234: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 51/301 Test #252: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ................. Passed 2.20 sec | |
| Start 253: testcorenrn_conc::coreneuron_cpu_offline | |
| 52/301 Test #253: testcorenrn_conc::coreneuron_cpu_offline ................................. Passed 0.34 sec | |
| Start 256: testcorenrn_deriv::neuron | |
| 53/301 Test #256: testcorenrn_deriv::neuron ................................................ Passed 0.73 sec | |
| Start 257: testcorenrn_deriv::coreneuron_cpu_online | |
| 54/301 Test #257: testcorenrn_deriv::coreneuron_cpu_online ................................. Passed 1.97 sec | |
| Start 258: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 55/301 Test #258: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................ Passed 2.22 sec | |
| Start 259: testcorenrn_deriv::coreneuron_cpu_offline | |
| 56/301 Test #259: testcorenrn_deriv::coreneuron_cpu_offline ................................ Passed 0.36 sec | |
| Start 268: testcorenrn_kin::neuron | |
| 57/301 Test #268: testcorenrn_kin::neuron .................................................. Passed 0.65 sec | |
| Start 269: testcorenrn_kin::coreneuron_cpu_online | |
| 58/301 Test #234: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................ Passed 8.08 sec | |
| Start 235: external_ringtest::coreneuron_cpu_mpi | |
| 59/301 Test #269: testcorenrn_kin::coreneuron_cpu_online ................................... Passed 1.77 sec | |
| Start 270: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 60/301 Test #270: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate .................. Passed 2.37 sec | |
| Start 271: testcorenrn_kin::coreneuron_cpu_offline | |
| 61/301 Test #271: testcorenrn_kin::coreneuron_cpu_offline .................................. Passed 0.41 sec | |
| Start 1: cmd_interface_test | |
| 62/301 Test #1: cmd_interface_test ....................................................... Passed 0.46 sec | |
| Start 2: interleave_info_constructor_test | |
| 63/301 Test #2: interleave_info_constructor_test ......................................... Passed 0.26 sec | |
| Start 3: alignment_test | |
| 64/301 Test #3: alignment_test ........................................................... Passed 0.25 sec | |
| Start 4: queuing_test | |
| 65/301 Test #4: queuing_test ............................................................. Passed 0.25 sec | |
| Start 5: test-solver | |
| 66/301 Test #5: test-solver .............................................................. Passed 0.57 sec | |
| Start 6: random_test | |
| 67/301 Test #6: random_test .............................................................. Passed 0.30 sec | |
| Start 7: lfp_test | |
| 68/301 Test #235: external_ringtest::coreneuron_cpu_mpi .................................... Passed 6.44 sec | |
| Start 236: external_ringtest::coreneuron_cpu_mpi_python | |
| 69/301 Test #7: lfp_test ................................................................. Passed 0.43 sec | |
| Start 8: unit_tests::testneuron | |
| 70/301 Test #8: unit_tests::testneuron ................................................... Passed 0.57 sec | |
| Start 9: unit_tests::testneuron_soa_erase_calls_terminate | |
| 71/301 Test #9: unit_tests::testneuron_soa_erase_calls_terminate ......................... Passed 0.34 sec | |
| Start 10: ringtest | |
| 72/301 Test #10: ringtest ................................................................. Passed 2.17 sec | |
| Start 11: connect_dend | |
| 73/301 Test #11: connect_dend ............................................................. Passed 0.39 sec | |
| Start 12: mpi_init::nrniv_mpiopt | |
| 74/301 Test #12: mpi_init::nrniv_mpiopt ................................................... Passed 0.38 sec | |
| Start 13: mpi_init::nrniv_nrnmpi_init | |
| 75/301 Test #13: mpi_init::nrniv_nrnmpi_init .............................................. Passed 0.38 sec | |
| Start 14: mpi_init::python_nrnmpi_init | |
| 76/301 Test #14: mpi_init::python_nrnmpi_init ............................................. Passed 1.83 sec | |
| Start 15: mpi_init::python_mpienv | |
| 77/301 Test #236: external_ringtest::coreneuron_cpu_mpi_python ............................. Passed 7.60 sec | |
| Start 237: external_ringtest::coreneuron_cpu_mpi_offline | |
| 78/301 Test #15: mpi_init::python_mpienv .................................................. Passed 2.14 sec | |
| Start 16: mpi_init::nrniv_mpiexec_mpiopt | |
| 79/301 Test #16: mpi_init::nrniv_mpiexec_mpiopt ........................................... Passed 0.59 sec | |
| Start 17: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 80/301 Test #17: mpi_init::nrniv_mpiexec_nrnmpi_init ...................................... Passed 0.44 sec | |
| Start 18: mpi_init::python_mpiexec_nrnmpi_init | |
| 81/301 Test #18: mpi_init::python_mpiexec_nrnmpi_init ..................................... Passed 2.17 sec | |
| Start 19: mpi_init::python_mpiexec_mpienv | |
| 82/301 Test #237: external_ringtest::coreneuron_cpu_mpi_offline ............................ Passed 5.21 sec | |
| Start 241: external_ringtest::coreneuron_mpi_registermapping_directmode | |
| 83/301 Test #19: mpi_init::python_mpiexec_mpienv .......................................... Passed 2.08 sec | |
| Start 20: unit_tests::python_unit_tests | |
| 84/301 Test #20: unit_tests::python_unit_tests ............................................ Passed 2.83 sec | |
| Start 21: pytest::basic_tests_py3.10 | |
| 85/301 Test #21: pytest::basic_tests_py3.10 ............................................... Passed 2.98 sec | |
| Start 22: pytest_coreneuron::basic_tests_py3.10 | |
| 86/301 Test #241: external_ringtest::coreneuron_mpi_registermapping_directmode ............. Passed 8.55 sec | |
| Start 242: external_ringtest::coreneuron_mpi_registermapping_filemode | |
| 87/301 Test #242: external_ringtest::coreneuron_mpi_registermapping_filemode ............... Passed 8.54 sec | |
| Start 262: testcorenrn_gf::neuron | |
| 88/301 Test #22: pytest_coreneuron::basic_tests_py3.10 .................................... Passed 19.50 sec | |
| Start 23: datahandle::datahandle_tests | |
| 89/301 Test #262: testcorenrn_gf::neuron ................................................... Passed 10.11 sec | |
| Start 263: testcorenrn_gf::coreneuron_cpu_online | |
| 90/301 Test #23: datahandle::datahandle_tests ............................................. Passed 2.60 sec | |
| Start 24: coverage_tests::cover_tests | |
| 91/301 Test #263: testcorenrn_gf::coreneuron_cpu_online .................................... Passed 2.87 sec | |
| Start 264: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 92/301 Test #24: coverage_tests::cover_tests .............................................. Passed 3.42 sec | |
| Start 25: example_nmodl::ca_ap_hoc | |
| 93/301 Test #25: example_nmodl::ca_ap_hoc ................................................. Passed 0.56 sec | |
| Start 26: example_nmodl::cabpump_hoc | |
| 94/301 Test #26: example_nmodl::cabpump_hoc ............................................... Passed 0.54 sec | |
| Start 27: example_nmodl::cachan_hoc | |
| 95/301 Test #27: example_nmodl::cachan_hoc ................................................ Passed 0.29 sec | |
| Start 28: example_nmodl::cadif_hoc | |
| 96/301 Test #28: example_nmodl::cadif_hoc ................................................. Passed 0.39 sec | |
| Start 29: example_nmodl::cadifusl_hoc | |
| 97/301 Test #29: example_nmodl::cadifusl_hoc .............................................. Passed 0.65 sec | |
| Start 30: example_nmodl::cadifusl1_hoc | |
| 98/301 Test #30: example_nmodl::cadifusl1_hoc ............................................. Passed 1.12 sec | |
| Start 31: example_nmodl::cadifusl2_hoc | |
| 99/301 Test #31: example_nmodl::cadifusl2_hoc ............................................. Passed 0.62 sec | |
| Start 32: example_nmodl::cagk_hoc | |
| 100/301 Test #32: example_nmodl::cagk_hoc .................................................. Passed 0.31 sec | |
| Start 33: example_nmodl::capmp_hoc | |
| 101/301 Test #33: example_nmodl::capmp_hoc ................................................. Passed 0.95 sec | |
| Start 34: example_nmodl::cv_hoc | |
| 102/301 Test #34: example_nmodl::cv_hoc .................................................... Passed 0.32 sec | |
| Start 35: example_nmodl::fh_hoc | |
| 103/301 Test #35: example_nmodl::fh_hoc .................................................... Passed 0.31 sec | |
| Start 36: example_nmodl::fit1_hoc | |
| 104/301 Test #36: example_nmodl::fit1_hoc .................................................. Passed 0.27 sec | |
| Start 37: example_nmodl::gap_hoc | |
| 105/301 Test #37: example_nmodl::gap_hoc ................................................... Passed 0.34 sec | |
| Start 38: example_nmodl::hh1_hoc | |
| 106/301 Test #38: example_nmodl::hh1_hoc ................................................... Passed 0.33 sec | |
| Start 39: example_nmodl::hhvect_hoc | |
| 107/301 Test #39: example_nmodl::hhvect_hoc ................................................ Passed 0.34 sec | |
| Start 40: example_nmodl::nacum_hoc | |
| 108/301 Test #40: example_nmodl::nacum_hoc ................................................. Passed 0.40 sec | |
| Start 41: example_nmodl::nadifl1_hoc | |
| 109/301 Test #41: example_nmodl::nadifl1_hoc ............................................... Passed 0.44 sec | |
| Start 42: example_nmodl::nadifl2_hoc | |
| 110/301 Test #42: example_nmodl::nadifl2_hoc ............................................... Passed 0.41 sec | |
| Start 43: example_nmodl::nadifl3_hoc | |
| 111/301 Test #43: example_nmodl::nadifl3_hoc ............................................... Passed 0.41 sec | |
| Start 44: example_nmodl::nadifl4_hoc | |
| 112/301 Test #44: example_nmodl::nadifl4_hoc ............................................... Passed 0.38 sec | |
| Start 45: example_nmodl::obj_ex_hoc | |
| 113/301 Test #45: example_nmodl::obj_ex_hoc ................................................ Passed 0.33 sec | |
| Start 46: example_nmodl::order_hoc | |
| 114/301 Test #46: example_nmodl::order_hoc ................................................. Passed 0.50 sec | |
| Start 47: example_nmodl::passiv_hoc | |
| 115/301 Test #47: example_nmodl::passiv_hoc ................................................ Passed 0.30 sec | |
| Start 48: example_nmodl::stim1_hoc | |
| 116/301 Test #48: example_nmodl::stim1_hoc ................................................. Passed 0.27 sec | |
| Start 49: example_nmodl::syn1_hoc | |
| 117/301 Test #49: example_nmodl::syn1_hoc .................................................. Passed 0.22 sec | |
| Start 50: example_nmodl::synpre_hoc | |
| 118/301 Test #50: example_nmodl::synpre_hoc ................................................ Passed 0.40 sec | |
| Start 51: example_nmodl::tstextrn_hoc | |
| 119/301 Test #51: example_nmodl::tstextrn_hoc .............................................. Passed 0.21 sec | |
| Start 52: example_nmodl::tstpnt1_hoc | |
| 120/301 Test #264: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ................... Passed 14.07 sec | |
| Start 265: testcorenrn_gf::coreneuron_cpu_offline | |
| 121/301 Test #52: example_nmodl::tstpnt1_hoc ............................................... Passed 0.20 sec | |
| Start 53: example_nmodl::tstpnt2_hoc | |
| 122/301 Test #53: example_nmodl::tstpnt2_hoc ............................................... Passed 0.24 sec | |
| Start 54: example_nmodl::tstvec_hoc | |
| 123/301 Test #54: example_nmodl::tstvec_hoc ................................................ Passed 0.20 sec | |
| Start 55: example_nmodl::cagkftab_py | |
| 124/301 Test #265: testcorenrn_gf::coreneuron_cpu_offline ................................... Passed 0.84 sec | |
| Start 274: testcorenrn_patstim::neuron | |
| 125/301 Test #274: testcorenrn_patstim::neuron .............................................. Passed 3.33 sec | |
| Start 275: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 126/301 Test #275: testcorenrn_patstim::coreneuron_cpu_offline_saverestore .................. Passed 3.76 sec | |
| Start 276: testcorenrn_patstim::coreneuron_cpu_offline | |
| 127/301 Test #276: testcorenrn_patstim::coreneuron_cpu_offline .............................. Passed 1.95 sec | |
| Start 279: testcorenrn_vecplay::neuron | |
| 128/301 Test #279: testcorenrn_vecplay::neuron .............................................. Passed 2.07 sec | |
| Start 280: testcorenrn_vecplay::coreneuron_cpu_online | |
| 129/301 Test #280: testcorenrn_vecplay::coreneuron_cpu_online ............................... Passed 4.66 sec | |
| Start 281: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 130/301 Test #281: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate .............. Passed 9.83 sec | |
| Start 282: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 131/301 Test #282: testcorenrn_vecplay::coreneuron_cpu_offline .............................. Passed 0.78 sec | |
| Start 291: testcorenrn_watch::neuron | |
| 132/301 Test #291: testcorenrn_watch::neuron ................................................ Passed 1.95 sec | |
| Start 292: testcorenrn_watch::coreneuron_cpu_online | |
| 133/301 Test #55: example_nmodl::cagkftab_py ............................................... Passed 29.11 sec | |
| Start 56: example_nmodl::expsynspine_py | |
| 134/301 Test #56: example_nmodl::expsynspine_py ............................................ Passed 2.93 sec | |
| Start 57: example_nmodl::nonlin_py | |
| 135/301 Test #292: testcorenrn_watch::coreneuron_cpu_online ................................. Passed 3.45 sec | |
| Start 293: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 136/301 Test #293: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................ Passed 7.20 sec | |
| Start 294: testcorenrn_watch::coreneuron_cpu_offline | |
| 137/301 Test #294: testcorenrn_watch::coreneuron_cpu_offline ................................ Passed 0.66 sec | |
| Start 297: testcorenrn_netstimdirect::direct_netstimdirect | |
| 138/301 Test #57: example_nmodl::nonlin_py ................................................. Passed 10.26 sec | |
| Start 58: example_nmodl::tstpnt1_py | |
| 139/301 Test #297: testcorenrn_netstimdirect::direct_netstimdirect .......................... Passed 2.86 sec | |
| Start 298: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 140/301 Test #58: example_nmodl::tstpnt1_py ................................................ Passed 1.98 sec | |
| Start 59: example_nmodl::tstpnt2_py | |
| 141/301 Test #59: example_nmodl::tstpnt2_py ................................................ Passed 1.41 sec | |
| Start 60: example_nmodl::vlag_py | |
| 142/301 Test #298: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ......... Passed 3.67 sec | |
| Start 61: hoctests::test_loadbal_hoc | |
| Start 62: hoctests::test_random_hoc | |
| 143/301 Test #60: example_nmodl::vlag_py ................................................... Passed 1.28 sec | |
| Start 63: hoctests::perf1_hoc | |
| 144/301 Test #61: hoctests::test_loadbal_hoc ............................................... Passed 0.47 sec | |
| Start 64: hoctests::test1_hoc | |
| 145/301 Test #62: hoctests::test_random_hoc ................................................ Passed 0.47 sec | |
| Start 65: hoctests::test2_hoc | |
| 146/301 Test #65: hoctests::test2_hoc ...................................................... Passed 0.36 sec | |
| Start 66: hoctests::test3_hoc | |
| 147/301 Test #66: hoctests::test3_hoc ...................................................... Passed 0.29 sec | |
| Start 67: hoctests::test4_hoc | |
| 148/301 Test #64: hoctests::test1_hoc ...................................................... Passed 0.80 sec | |
| Start 68: hoctests::test5_hoc | |
| 149/301 Test #67: hoctests::test4_hoc ...................................................... Passed 0.22 sec | |
| Start 69: hoctests::test6_hoc | |
| 150/301 Test #68: hoctests::test5_hoc ...................................................... Passed 0.27 sec | |
| Start 70: hoctests::test7_hoc | |
| 151/301 Test #69: hoctests::test6_hoc ...................................................... Passed 0.23 sec | |
| Start 71: hoctests::test8_hoc | |
| 152/301 Test #71: hoctests::test8_hoc ...................................................... Passed 0.32 sec | |
| Start 72: hoctests::test9_hoc | |
| 153/301 Test #70: hoctests::test7_hoc ...................................................... Passed 0.40 sec | |
| Start 73: hoctests::test_bbss_py | |
| 154/301 Test #72: hoctests::test9_hoc ...................................................... Passed 0.30 sec | |
| Start 74: hoctests::test_cvinterp_py | |
| 155/301 Test #73: hoctests::test_bbss_py ................................................... Passed 1.66 sec | |
| Start 75: hoctests::test_hocGUI2_py | |
| 156/301 Test #74: hoctests::test_cvinterp_py ............................................... Passed 1.59 sec | |
| Start 76: hoctests::test_hoc_class_instance_py | |
| 157/301 Test #76: hoctests::test_hoc_class_instance_py .....................................***Failed 1.85 sec | |
| h.Vector[0] | |
| Traceback (most recent call last): | |
| File "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/hoctests/test_hoc_class_instance_py/tests/test_hoc_class_instance.py", line 28, in <module> | |
| test1() | |
| File "/Users/gitlab-runner/builds/2/P208761/J1265056/hpc/cellular/nrn/build/test/hoctests/test_hoc_class_instance_py/tests/test_hoc_class_instance.py", line 18, in test1 | |
| exec(vstr + ".resize(10)") | |
| File "<string>", line 1, in <module> | |
| TypeError: 'type' object is not subscriptable | |
| Start 77: hoctests::test_hocmech_py | |
| 158/301 Test #75: hoctests::test_hocGUI2_py ................................................ Passed 2.16 sec | |
| Start 78: hoctests::test_kschan_py | |
| 159/301 Test #63: hoctests::perf1_hoc ...................................................... Passed 6.01 sec | |
| Start 79: hoctests::test_legacy_setpointer_py | |
| 160/301 Test #77: hoctests::test_hocmech_py ................................................ Passed 1.76 sec | |
| Start 80: hoctests::test_mechfunc_py | |
| 161/301 Test #79: hoctests::test_legacy_setpointer_py ...................................... Passed 1.61 sec | |
| Start 81: hoctests::test_mechstd_py | |
| 162/301 Test #78: hoctests::test_kschan_py ................................................. Passed 2.48 sec | |
| Start 82: hoctests::test_mode_py | |
| 163/301 Test #80: hoctests::test_mechfunc_py ............................................... Passed 1.88 sec | |
| Start 83: hoctests::test_neurondemo_py | |
| 164/301 Test #81: hoctests::test_mechstd_py ................................................ Passed 1.86 sec | |
| Start 84: hoctests::test_nrniv-launch_py | |
| 165/301 Test #82: hoctests::test_mode_py ................................................... Passed 1.68 sec | |
| Start 85: hoctests::test_optim_node_order_py | |
| 166/301 Test #84: hoctests::test_nrniv-launch_py ........................................... Passed 0.60 sec | |
| Start 86: hoctests::test_random_py | |
| 167/301 Test #83: hoctests::test_neurondemo_py ............................................. Passed 1.57 sec | |
| Start 87: hoctests::test_setdata_py | |
| 168/301 Test #85: hoctests::test_optim_node_order_py ....................................... Passed 1.83 sec | |
| Start 88: hoctests::test_shape_py | |
| 169/301 Test #86: hoctests::test_random_py ................................................. Passed 1.96 sec | |
| Start 89: hoctests::test_thread_partition_py | |
| 170/301 Test #87: hoctests::test_setdata_py ................................................ Passed 1.87 sec | |
| Start 90: hoctests::test1_py | |
| 171/301 Test #88: hoctests::test_shape_py .................................................. Passed 2.00 sec | |
| Start 91: hoctests::test2_py | |
| 172/301 Test #90: hoctests::test1_py ....................................................... Passed 1.87 sec | |
| Start 92: hoctests::test9_py | |
| 173/301 Test #89: hoctests::test_thread_partition_py ....................................... Passed 2.30 sec | |
| Start 98: coreneuron_standalone::test_nrn_corenrn_standalone | |
| 174/301 Test #91: hoctests::test2_py ....................................................... Passed 1.91 sec | |
| Start 99: nmodl_tests::test_table | |
| 175/301 Test #92: hoctests::test9_py ....................................................... Passed 2.01 sec | |
| Start 100: nmodl_tests::test_disc | |
| 176/301 Test #98: coreneuron_standalone::test_nrn_corenrn_standalone ....................... Passed 3.56 sec | |
| Start 101: nmodl_tests::test_function_table | |
| 177/301 Test #99: nmodl_tests::test_table .................................................. Passed 3.03 sec | |
| Start 102: nmodl_tests::test_kinetic | |
| 178/301 Test #100: nmodl_tests::test_disc ................................................... Passed 2.83 sec | |
| Start 103: nmodl_tests::test_random | |
| 179/301 Test #101: nmodl_tests::test_function_table ......................................... Passed 2.94 sec | |
| Start 104: nmodl_tests::test_path_spaces | |
| 180/301 Test #102: nmodl_tests::test_kinetic ................................................ Passed 3.06 sec | |
| Start 105: coreneuron_modtests::version_macros | |
| 181/301 Test #103: nmodl_tests::test_random ................................................. Passed 3.24 sec | |
| Start 107: coreneuron_modtests::fornetcon_py_cpu | |
| 182/301 Test #104: nmodl_tests::test_path_spaces ............................................ Passed 3.25 sec | |
| Start 108: coreneuron_modtests::direct_py_cpu | |
| 183/301 Test #105: coreneuron_modtests::version_macros ...................................... Passed 3.26 sec | |
| Start 109: coreneuron_modtests::direct_hoc_cpu | |
| 184/301 Test #107: coreneuron_modtests::fornetcon_py_cpu .................................... Passed 3.37 sec | |
| Start 110: coreneuron_modtests::spikes_py_cpu | |
| 185/301 Test #109: coreneuron_modtests::direct_hoc_cpu ...................................... Passed 2.11 sec | |
| Start 111: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 186/301 Test #108: coreneuron_modtests::direct_py_cpu ....................................... Passed 3.11 sec | |
| Start 112: coreneuron_modtests::fast_imem_py_cpu | |
| 187/301 Test #110: coreneuron_modtests::spikes_py_cpu ....................................... Passed 3.12 sec | |
| Start 113: coreneuron_modtests::datareturn_py_cpu | |
| 188/301 Test #111: coreneuron_modtests::spikes_file_mode_py_cpu ............................. Passed 3.05 sec | |
| Start 114: coreneuron_modtests::test_units_py_cpu | |
| 189/301 Test #112: coreneuron_modtests::fast_imem_py_cpu .................................... Passed 4.02 sec | |
| Start 115: coreneuron_modtests::test_netmove_py_cpu | |
| 190/301 Test #114: coreneuron_modtests::test_units_py_cpu ................................... Passed 2.46 sec | |
| Start 116: coreneuron_modtests::test_pointer_py_cpu | |
| 191/301 Test #113: coreneuron_modtests::datareturn_py_cpu ................................... Passed 4.44 sec | |
| Start 117: coreneuron_modtests::test_watchrange_py_cpu | |
| 192/301 Test #115: coreneuron_modtests::test_netmove_py_cpu ................................. Passed 4.84 sec | |
| Start 118: coreneuron_modtests::test_psolve_py_cpu | |
| 193/301 Test #117: coreneuron_modtests::test_watchrange_py_cpu .............................. Passed 3.03 sec | |
| Start 119: coreneuron_modtests::test_ba_py_cpu | |
| 194/301 Test #116: coreneuron_modtests::test_pointer_py_cpu ................................. Passed 5.96 sec | |
| Start 120: coreneuron_modtests::test_nmodlrandom_py_cpu | |
| 195/301 Test #119: coreneuron_modtests::test_ba_py_cpu ...................................... Passed 2.37 sec | |
| Start 121: coreneuron_modtests::test_nmodlrandom_syntax_py_cpu | |
| 196/301 Test #118: coreneuron_modtests::test_psolve_py_cpu .................................. Passed 3.21 sec | |
| Start 122: coreneuron_modtests::test_natrans_py_cpu | |
| 197/301 Test #120: coreneuron_modtests::test_nmodlrandom_py_cpu ............................. Passed 3.11 sec | |
| Start 123: coreneuron_modtests::array_variable_transfer_run_mode_0_py_cpu | |
| 198/301 Test #122: coreneuron_modtests::test_natrans_py_cpu ................................. Passed 2.80 sec | |
| Start 124: coreneuron_modtests::array_variable_transfer_run_mode_1_py_cpu | |
| 199/301 Test #123: coreneuron_modtests::array_variable_transfer_run_mode_0_py_cpu ........... Passed 2.90 sec | |
| Start 125: coreneuron_modtests::array_variable_transfer_run_mode_2_py_cpu | |
| 200/301 Test #121: coreneuron_modtests::test_nmodlrandom_syntax_py_cpu ...................... Passed 6.10 sec | |
| Start 126: coreneuron_modtests::array_variable_transfer_file_mode_py_cpu | |
| 201/301 Test #124: coreneuron_modtests::array_variable_transfer_run_mode_1_py_cpu ........... Passed 2.83 sec | |
| Start 129: nmodl_tests_coreneuron::test_table_coreneuron_cpu | |
| 202/301 Test #125: coreneuron_modtests::array_variable_transfer_run_mode_2_py_cpu ........... Passed 3.15 sec | |
| Start 130: nmodl_tests_coreneuron::test_disc_coreneuron_cpu | |
| 203/301 Test #129: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................ Passed 2.52 sec | |
| Start 131: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu | |
| 204/301 Test #126: coreneuron_modtests::array_variable_transfer_file_mode_py_cpu ............ Passed 3.16 sec | |
| Start 132: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu | |
| 205/301 Test #130: nmodl_tests_coreneuron::test_disc_coreneuron_cpu ......................... Passed 2.81 sec | |
| Start 133: modlunit_unitstest | |
| 206/301 Test #131: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ............... Passed 2.77 sec | |
| Start 134: modlunit_hh | |
| 207/301 Test #134: modlunit_hh .............................................................. Passed 0.19 sec | |
| Start 135: modlunit_stim | |
| 208/301 Test #133: modlunit_unitstest ....................................................... Passed 0.25 sec | |
| Start 136: modlunit_pattern | |
| 209/301 Test #135: modlunit_stim ............................................................ Passed 0.12 sec | |
| Start 137: modlunit_rand | |
| 210/301 Test #136: modlunit_pattern ......................................................... Passed 0.14 sec | |
| Start 138: pyinit::nrniv_script.py | |
| 211/301 Test #137: modlunit_rand ............................................................ Passed 0.12 sec | |
| Start 139: pyinit::nrniv_script.py_error | |
| 212/301 Test #132: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ...................... Passed 2.86 sec | |
| Start 140: pyinit::nrniv_two_scripts.py | |
| 213/301 Test #138: pyinit::nrniv_script.py .................................................. Passed 0.39 sec | |
| Start 141: pyinit::nrniv_two_scripts.py_error_check_code | |
| 214/301 Test #139: pyinit::nrniv_script.py_error ............................................ Passed 0.31 sec | |
| Start 142: pyinit::nrniv_two_scripts.py_error_check_output | |
| 215/301 Test #140: pyinit::nrniv_two_scripts.py ............................................. Passed 0.39 sec | |
| Start 143: pyinit::nrniv_python_command | |
| 216/301 Test #141: pyinit::nrniv_two_scripts.py_error_check_code ............................ Passed 0.24 sec | |
| Start 144: pyinit::nrniv_python_command_error | |
| 217/301 Test #143: pyinit::nrniv_python_command ............................................. Passed 0.33 sec | |
| Start 145: pyinit::nrniv_python_script.py | |
| 218/301 Test #142: pyinit::nrniv_two_scripts.py_error_check_output .......................... Passed 0.46 sec | |
| Start 146: pyinit::nrniv_python_script.py_error | |
| 219/301 Test #144: pyinit::nrniv_python_command_error ....................................... Passed 0.55 sec | |
| Start 147: pyinit::nrniv_python_command_twice | |
| 220/301 Test #145: pyinit::nrniv_python_script.py ........................................... Passed 0.39 sec | |
| Start 148: pyinit::nrniv_python_script.py_twice | |
| 221/301 Test #146: pyinit::nrniv_python_script.py_error ..................................... Passed 0.41 sec | |
| Start 149: pyinit::nrniv_python_command_args | |
| 222/301 Test #147: pyinit::nrniv_python_command_twice ....................................... Passed 0.29 sec | |
| Start 150: pyinit::nrniv_python_script.py_args | |
| 223/301 Test #148: pyinit::nrniv_python_script.py_twice ..................................... Passed 0.30 sec | |
| Start 151: pyinit::nrniv_nopython_PythonObject | |
| 224/301 Test #149: pyinit::nrniv_python_command_args ........................................ Passed 0.32 sec | |
| Start 152: pyinit::nrniv_nopython_PythonObject_pyexe | |
| 225/301 Test #151: pyinit::nrniv_nopython_PythonObject ...................................... Passed 0.19 sec | |
| Start 153: pyinit::nrniv_nopython_PythonObject_pyenv | |
| 226/301 Test #150: pyinit::nrniv_python_script.py_args ...................................... Passed 0.27 sec | |
| Start 154: pyinit::nrniv_py3.10_python_command_version_check | |
| 227/301 Test #152: pyinit::nrniv_nopython_PythonObject_pyexe ................................ Passed 0.22 sec | |
| Start 155: pyinit::nrniv_py3.10_python_check_sys_path | |
| 228/301 Test #153: pyinit::nrniv_nopython_PythonObject_pyenv ................................ Passed 0.19 sec | |
| Start 157: pyinit::nrniv_py3.10_nrnpython_check_sys_path | |
| 229/301 Test #154: pyinit::nrniv_py3.10_python_command_version_check ........................ Passed 0.23 sec | |
| Start 159: pyinit::nrniv_py3.10_python_check_sys_prefix | |
| 230/301 Test #155: pyinit::nrniv_py3.10_python_check_sys_path ............................... Passed 0.24 sec | |
| Start 161: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix | |
| 231/301 Test #157: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................ Passed 0.27 sec | |
| Start 163: pyinit::nrniv_py3.10_python_check_sys_exec_prefix | |
| 232/301 Test #159: pyinit::nrniv_py3.10_python_check_sys_prefix ............................. Passed 0.26 sec | |
| Start 165: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix | |
| 233/301 Test #161: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix .......................... Passed 0.27 sec | |
| Start 167: pyinit::nrniv_py3.10_python_check_sys_base_prefix | |
| 234/301 Test #163: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................ Passed 0.24 sec | |
| Start 169: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix | |
| 235/301 Test #165: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix ..................... Passed 0.22 sec | |
| Start 171: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix | |
| 236/301 Test #167: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................ Passed 0.24 sec | |
| Start 173: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix | |
| 237/301 Test #169: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix ..................... Passed 0.24 sec | |
| Start 175: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding | |
| 238/301 Test #171: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ................... Passed 0.24 sec | |
| Start 177: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding | |
| 239/301 Test #173: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................ Passed 0.34 sec | |
| Start 179: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding | |
| 240/301 Test #175: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding .................... Passed 0.27 sec | |
| Start 181: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding | |
| 241/301 Test #177: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding ................. Passed 0.25 sec | |
| Start 183: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding | |
| 242/301 Test #181: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding .................. Passed 0.31 sec | |
| Start 185: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding | |
| 243/301 Test #183: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding .................... Passed 0.32 sec | |
| Start 187: pyinit::nrniv_py3.10_python_command_import_neuron | |
| 244/301 Test #179: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding ..................... Passed 0.37 sec | |
| Start 188: pyinit::py3.10_command_import_neuron | |
| 245/301 Test #185: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding ................. Passed 0.24 sec | |
| Start 189: pyinit::nrniv_py3.10_hoc_command_nrnpython | |
| 246/301 Test #189: pyinit::nrniv_py3.10_hoc_command_nrnpython ............................... Passed 0.48 sec | |
| Start 190: pyinit::nrniv_pydef_python_command_version_check | |
| 247/301 Test #190: pyinit::nrniv_pydef_python_command_version_check ......................... Passed 0.33 sec | |
| Start 191: pyinit::nrniv_pydef_python_check_sys_path | |
| 248/301 Test #191: pyinit::nrniv_pydef_python_check_sys_path ................................ Passed 0.33 sec | |
| Start 193: pyinit::nrniv_pydef_nrnpython_check_sys_path | |
| 249/301 Test #188: pyinit::py3.10_command_import_neuron ..................................... Passed 1.63 sec | |
| Start 195: pyinit::nrniv_pydef_python_check_sys_prefix | |
| 250/301 Test #193: pyinit::nrniv_pydef_nrnpython_check_sys_path ............................. Passed 0.29 sec | |
| Start 197: pyinit::nrniv_pydef_nrnpython_check_sys_prefix | |
| 251/301 Test #187: pyinit::nrniv_py3.10_python_command_import_neuron ........................ Passed 1.70 sec | |
| Start 199: pyinit::nrniv_pydef_python_check_sys_exec_prefix | |
| 252/301 Test #195: pyinit::nrniv_pydef_python_check_sys_prefix .............................. Passed 0.22 sec | |
| Start 201: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix | |
| 253/301 Test #197: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ........................... Passed 0.21 sec | |
| Start 203: pyinit::nrniv_pydef_python_check_sys_base_prefix | |
| 254/301 Test #199: pyinit::nrniv_pydef_python_check_sys_exec_prefix ......................... Passed 0.26 sec | |
| Start 205: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix | |
| 255/301 Test #201: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ...................... Passed 0.23 sec | |
| Start 207: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix | |
| 256/301 Test #203: pyinit::nrniv_pydef_python_check_sys_base_prefix ......................... Passed 0.22 sec | |
| Start 209: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix | |
| 257/301 Test #205: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ...................... Passed 0.24 sec | |
| Start 211: pyinit::nrniv_pydef_python_check_sys_stderr.encoding | |
| 258/301 Test #207: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix .................... Passed 0.22 sec | |
| Start 213: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding | |
| 259/301 Test #209: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix ................. Passed 0.23 sec | |
| Start 215: pyinit::nrniv_pydef_python_check_sys_stdin.encoding | |
| 260/301 Test #211: pyinit::nrniv_pydef_python_check_sys_stderr.encoding ..................... Passed 0.24 sec | |
| Start 217: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding | |
| 261/301 Test #215: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ...................... Passed 0.23 sec | |
| Start 219: pyinit::nrniv_pydef_python_check_sys_stdout.encoding | |
| 262/301 Test #213: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding .................. Passed 0.30 sec | |
| Start 221: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding | |
| 263/301 Test #217: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ................... Passed 0.34 sec | |
| Start 223: pyinit::nrniv_pydef_python_command_import_neuron | |
| 264/301 Test #219: pyinit::nrniv_pydef_python_check_sys_stdout.encoding ..................... Passed 0.35 sec | |
| Start 224: pyinit::pydef_command_import_neuron | |
| 265/301 Test #221: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding .................. Passed 0.32 sec | |
| Start 225: pyinit::nrniv_pydef_hoc_command_nrnpython | |
| 266/301 Test #225: pyinit::nrniv_pydef_hoc_command_nrnpython ................................ Passed 0.33 sec | |
| Start 226: external_nrntest | |
| 267/301 Test #223: pyinit::nrniv_pydef_python_command_import_neuron ......................... Passed 1.80 sec | |
| Start 233: external_ringtest_nrn::optim_node_order | |
| 268/301 Test #224: pyinit::pydef_command_import_neuron ...................................... Passed 1.85 sec | |
| Start 249: testcorenrn_bbcore::compare_results | |
| 269/301 Test #249: testcorenrn_bbcore::compare_results ...................................... Passed 0.25 sec | |
| Start 255: testcorenrn_conc::compare_results | |
| 270/301 Test #255: testcorenrn_conc::compare_results ........................................ Passed 0.04 sec | |
| Start 261: testcorenrn_deriv::compare_results | |
| 271/301 Test #261: testcorenrn_deriv::compare_results ....................................... Passed 0.04 sec | |
| Start 267: testcorenrn_gf::compare_results | |
| 272/301 Test #267: testcorenrn_gf::compare_results .......................................... Passed 0.04 sec | |
| Start 273: testcorenrn_kin::compare_results | |
| 273/301 Test #273: testcorenrn_kin::compare_results ......................................... Passed 0.03 sec | |
| Start 278: testcorenrn_patstim::compare_results | |
| 274/301 Test #278: testcorenrn_patstim::compare_results ..................................... Passed 0.06 sec | |
| Start 284: testcorenrn_vecplay::compare_results | |
| 275/301 Test #284: testcorenrn_vecplay::compare_results ..................................... Passed 0.04 sec | |
| Start 296: testcorenrn_watch::compare_results | |
| 276/301 Test #296: testcorenrn_watch::compare_results ....................................... Passed 0.04 sec | |
| Start 299: testcorenrn_netstimdirect::compare_results | |
| 277/301 Test #299: testcorenrn_netstimdirect::compare_results ............................... Passed 0.05 sec | |
| 278/301 Test #233: external_ringtest_nrn::optim_node_order .................................. Passed 68.01 sec | |
| Start 94: parallel::partrans | |
| 279/301 Test #94: parallel::partrans ....................................................... Passed 1.60 sec | |
| Start 95: parallel::netpar | |
| 280/301 Test #95: parallel::netpar ......................................................... Passed 2.07 sec | |
| Start 96: parallel::bas | |
| 281/301 Test #96: parallel::bas ............................................................ Passed 6.85 sec | |
| Start 97: parallel::nrntest_fast | |
| 282/301 Test #97: parallel::nrntest_fast ................................................... Passed 3.42 sec | |
| Start 106: coreneuron_modtests::inputpresyn_py | |
| 283/301 Test #106: coreneuron_modtests::inputpresyn_py ...................................... Passed 1.68 sec | |
| Start 127: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 284/301 Test #127: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ......................... Passed 2.14 sec | |
| Start 300: tqperf::coreneuron_special | |
| 285/301 Test #300: tqperf::coreneuron_special ............................................... Passed 13.93 sec | |
| Start 301: tqperf::coreneuron_python | |
| 286/301 Test #301: tqperf::coreneuron_python ................................................ Passed 14.47 sec | |
| 287/301 Test #226: external_nrntest ......................................................... Passed 146.92 sec | |
| Start 289: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 288/301 Test #289: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................ Passed 0.54 sec | |
| Start 227: reduced_dentate::neuron | |
| 289/301 Test #227: reduced_dentate::neuron .................................................. Passed 119.83 sec | |
| Start 228: reduced_dentate::coreneuron_cpu | |
| 290/301 Test #228: reduced_dentate::coreneuron_cpu .......................................... Passed 100.36 sec | |
| Start 239: external_ringtest::coreneuron_cpu_mpi_threads | |
| 291/301 Test #239: external_ringtest::coreneuron_cpu_mpi_threads ............................ Passed 4.10 sec | |
| Start 240: external_ringtest::coreneuron_cpu_mpi_threads_python | |
| 292/301 Test #240: external_ringtest::coreneuron_cpu_mpi_threads_python ..................... Passed 4.10 sec | |
| Start 285: testcorenrn_vecevent::neuron | |
| 293/301 Test #285: testcorenrn_vecevent::neuron ............................................. Passed 0.58 sec | |
| Start 286: testcorenrn_vecevent::coreneuron_cpu_online | |
| 294/301 Test #286: testcorenrn_vecevent::coreneuron_cpu_online .............................. Passed 1.81 sec | |
| Start 287: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 295/301 Test #287: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ............. Passed 2.63 sec | |
| Start 288: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 296/301 Test #288: testcorenrn_vecevent::coreneuron_cpu_offline ............................. Passed 0.68 sec | |
| Start 93: parallel::subworld | |
| 297/301 Test #93: parallel::subworld ....................................................... Passed 1.94 sec | |
| Start 128: coreneuron_modtests::test_subworlds_py_cpu | |
| 298/301 Test #128: coreneuron_modtests::test_subworlds_py_cpu ............................... Passed 2.13 sec | |
| Start 229: reduced_dentate::compare_results | |
| Start 243: external_ringtest::compare_results | |
| Start 290: testcorenrn_vecevent::compare_results | |
| 299/301 Test #229: reduced_dentate::compare_results ......................................... Passed 0.03 sec | |
| 300/301 Test #290: testcorenrn_vecevent::compare_results .................................... Passed 0.03 sec | |
| 301/301 Test #243: external_ringtest::compare_results ....................................... Passed 0.04 sec | |
| 99% tests passed, 1 tests failed out of 301 | |
| Total Test time (real) = 642.04 sec | |
| The following tests FAILED: | |
| 76 - hoctests::test_hoc_class_instance_py (Failed) | |
| Errors while running CTest | |
| section_end:1714626767:step_script [0Ksection_start:1714626767:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1714626767:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1714625606:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1714625606:resolve_secrets [0Ksection_start:1714625606:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1072625222, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 208761, build ref , job ID 1265057 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1265057_PROD_P2160_CP2_C3 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2158780 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J1265057_PROD_P2160_CP2_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --ntasks=1 --jobid=2158780 --cpus-per-task=6 --mem=30750M | |
| section_end:1714625609:prepare_executor [0Ksection_start:1714625609:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n29 via bbpv1.epfl.ch... | |
| section_end:1714625617:prepare_script [0Ksection_start:1714625617:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1714625618:get_sources [0Ksection_start:1714625618:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| # special case for SPACK_DEPLOYMENT_SUFFIX=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| is_deployment_suffix = ref_type == 'suffix' and m.group(1).lower() == 'spack_deployment' | |
| if ref_type not in {'branch', 'tag', 'ref'} and not is_deployment_suffix: return | |
| print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3)) | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m | |
| [32;1m$ else[0;m | |
| [32;1m$ cat input_variables.env[0;m | |
| [32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m | |
| [32;1m$ set -o allexport[0;m | |
| [32;1m$ . input_variables.env[0;m | |
| [32;1m$ set +o allexport[0;m | |
| [32;1m$ unset MODULEPATH[0;m | |
| [32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m | |
| [32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m | |
| [32;1m$ echo Preparing to clone Spack into ${PWD}[0;m | |
| Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265057 | |
| [32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ module load unstable git[0;m | |
| [32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Updating files: 10% (1166/11298) Updating files: 11% (1243/11298) Updating files: 12% (1356/11298) Updating files: 13% (1469/11298) Updating files: 14% (1582/11298) Updating files: 15% (1695/11298) Updating files: 16% (1808/11298) Updating files: 16% (1832/11298) Updating files: 17% (1921/11298) Updating files: 18% (2034/11298) Updating files: 19% (2147/11298) Updating files: 20% (2260/11298) Updating files: 20% (2271/11298) Updating files: 21% (2373/11298) Updating files: 22% (2486/11298) Updating files: 23% (2599/11298) Updating files: 24% (2712/11298) Updating files: 25% (2825/11298) Updating files: 25% (2874/11298) Updating files: 26% (2938/11298) Updating files: 27% (3051/11298) Updating files: 27% (3091/11298) Updating files: 28% (3164/11298) Updating files: 29% (3277/11298) Updating files: 30% (3390/11298) Updating files: 30% (3457/11298) Updating files: 31% (3503/11298) Updating files: 32% (3616/11298) Updating files: 33% (3729/11298) Updating files: 34% (3842/11298) Updating files: 34% (3869/11298) Updating files: 35% (3955/11298) Updating files: 36% (4068/11298) Updating files: 37% (4181/11298) Updating files: 37% (4249/11298) Updating files: 38% (4294/11298) Updating files: 39% (4407/11298) Updating files: 40% (4520/11298) Updating files: 41% (4633/11298) Updating files: 41% (4651/11298) Updating files: 42% (4746/11298) Updating files: 43% (4859/11298) Updating files: 44% (4972/11298) Updating files: 45% (5085/11298) Updating files: 45% (5139/11298) Updating files: 46% (5198/11298) Updating files: 47% (5311/11298) Updating files: 48% (5424/11298) Updating files: 49% (5537/11298) Updating files: 50% (5649/11298) Updating files: 50% (5681/11298) Updating files: 51% (5762/11298) Updating files: 52% (5875/11298) Updating files: 53% (5988/11298) Updating files: 54% (6101/11298) Updating files: 54% (6138/11298) Updating files: 55% (6214/11298) Updating files: 56% (6327/11298) Updating files: 57% (6440/11298) Updating files: 58% (6553/11298) Updating files: 59% (6666/11298) Updating files: 59% (6681/11298) Updating files: 60% (6779/11298) Updating files: 61% (6892/11298) Updating files: 62% (7005/11298) Updating files: 63% (7118/11298) Updating files: 63% (7147/11298) Updating files: 64% (7231/11298) Updating files: 64% (7274/11298) Updating files: 65% (7344/11298) Updating files: 66% (7457/11298) Updating files: 67% (7570/11298) Updating files: 67% (7610/11298) Updating files: 68% (7683/11298) Updating files: 69% (7796/11298) Updating files: 70% (7909/11298) Updating files: 70% (7975/11298) Updating files: 71% (8022/11298) Updating files: 72% (8135/11298) Updating files: 73% (8248/11298) Updating files: 74% (8361/11298) Updating files: 74% (8373/11298) Updating files: 75% (8474/11298) Updating files: 76% (8587/11298) Updating files: 77% (8700/11298) Updating files: 78% (8813/11298) Updating files: 79% (8926/11298) Updating files: 79% (8979/11298) Updating files: 80% (9039/11298) Updating files: 81% (9152/11298) Updating files: 82% (9265/11298) Updating files: 83% (9378/11298) Updating files: 84% (9491/11298) Updating files: 85% (9604/11298) Updating files: 86% (9717/11298) Updating files: 86% (9758/11298) Updating files: 87% (9830/11298) Updating files: 88% (9943/11298) Updating files: 89% (10056/11298) Updating files: 89% (10130/11298) Updating files: 90% (10169/11298) Updating files: 91% (10282/11298) Updating files: 92% (10395/11298) Updating files: 93% (10508/11298) Updating files: 94% (10621/11298) Updating files: 95% (10734/11298) Updating files: 96% (10847/11298) Updating files: 96% (10906/11298) Updating files: 97% (10960/11298) Updating files: 98% (11073/11298) Updating files: 99% (11186/11298) Updating files: 100% (11298/11298) Updating files: 100% (11298/11298), done. | |
| [32;1m$ export SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ export SPACK_RESOLVED_COMMIT=$(cd "${SPACK_ROOT}" && git rev-parse HEAD)[0;m | |
| [32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m | |
| [32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_RESOLVED_COMMIT=${SPACK_RESOLVED_COMMIT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761/J1265057_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack ${SPACK_EXTRA_FLAGS} configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env[0;m | |
| spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED BLUECONFIGS --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=hines/hoc-class-instance-syntax SPACK_RESOLVED_COMMIT=7523705134c7fd42269ac66cfd7b411dd07ebed2 GITLAB_PIPELINES_BRANCH=main NEURON_COMMIT=c37983f65b4f7b386e049c653f50bed70fe3196b NMODL_BRANCH=master LIBSONATA_REPORT_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master BLUECONFIGS_BRANCH=main | |
| ==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=hines/hoc-class-instance-syntax | |
| ==> SPACK_RESOLVED: ignoring SPACK_RESOLVED_COMMIT=7523705134c7fd42269ac66cfd7b411dd07ebed2 | |
| ==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main | |
| ==> SPACK: ignoring SPACK_BRANCH=develop | |
| ==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master | |
| ==> BLUECONFIGS: ignoring BLUECONFIGS_BRANCH=main | |
| ==> nmodl: resolved branch master to 70553cc4d9092aafed42aa49ac4e730830af1124 | |
| ==> libsonata-report: resolved branch master to ea01d1df3350c3529f7a97db97d5c51272a08e8e | |
| ==> adding config: packages:neuron:require: '@git.c37983f65b4f7b386e049c653f50bed70fe3196b=develop' | |
| ==> adding config: packages:nmodl:require: '@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop' | |
| ==> adding config: packages:libsonata-report:require: '@git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop' | |
| [32;1m$ (cd "${SPACK_ROOT}" && git diff)[0;m | |
| [32;1m$ cat commit-mapping.env[0;m | |
| NEURON_COMMIT=c37983f65b4f7b386e049c653f50bed70fe3196b | |
| NMODL_COMMIT=70553cc4d9092aafed42aa49ac4e730830af1124 | |
| LIBSONATA_REPORT_COMMIT=ea01d1df3350c3529f7a97db97d5c51272a08e8e | |
| [32;1m$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env[0;m | |
| [32;1m$ cat commit-mapping.env >> spack_clone_variables.env[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -IL ninja[0;m | |
| ==> Warning: Expected user 904556 to own /nvme/bbpcihpcproj12, but it is owned by 0 | |
| ==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce.spec.json | |
| ==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/patchelf-0.18.0/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce.spack | |
| ==> Installing "patchelf@=0.18.0%gcc@=10.2.1 ldflags="-static-libstdc++ -static-libgcc" build_system=autotools arch=linux-centos7-x86_64" from a buildcache | |
| ==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spec.json | |
| ==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spack | |
| ==> Installing "clingo-bootstrap@=spack%gcc@=10.2.1~docs+ipo+optimized+python+static_libstdcpp build_system=cmake build_type=Release generator=make patches=bebb819,ec99431 arch=linux-centos7-x86_64" from a buildcache | |
| Input spec | |
| -------------------------------- | |
| - ninja | |
| Concretized | |
| -------------------------------- | |
| [e] omn6mm4a3zsbpbkptvdwxs6kkrh6yafw ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [32;1m$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> spack_clone_variables.env[0;m | |
| section_end:1714625741:step_script [0Ksection_start:1714625741:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=158728 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| commit-mapping.env: found 1 matching files and directories[0;m | |
| input_variables.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1265057 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=158828 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1265057 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1714625743:upload_artifacts_on_success [0Ksection_start:1714625743:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1714625744:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1714627491:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1714627491:resolve_secrets [0Ksection_start:1714627491:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1047493855, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 208761, build ref , job ID 1265075 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1265075_PROD_P2160_CP1_C4 | |
| Job parameters: memory=160G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2158844 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=160G --job-name=GL_J1265075_PROD_P2160_CP1_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --ntasks=16 --jobid=2158844 --cpus-per-task=1 --mem=160G | |
| section_end:1714627492:prepare_executor [0Ksection_start:1714627492:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n30 via bbpv1.epfl.ch... | |
| section_end:1714627498:prepare_script [0Ksection_start:1714627498:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1714627500:get_sources [0Ksection_start:1714627500:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:neuron:nmodl:intel:legacy (1265063)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=31225 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1265063 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1714627502:download_artifacts [0Ksection_start:1714627502:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} build-env ${SPACK_FULL_SPEC} -- ctest --no-tests=error --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n16 | |
| Build name: Linux-icpx | |
| Create new tag: 20240502-0525 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265063/spack-build/spack-stage-neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b_develop-2axlnbootcf7duaejyuwj65gqpo4kyvn/spack-build-2axlnbo | |
| Start 286: olfactory-bulb-3d::neuron::preparation | |
| Start 288: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| Start 154: pyinit::nrniv_py3.11_python_check_sys_path::preparation | |
| Start 156: pyinit::nrniv_py3.11_nrnpython_check_sys_path::preparation | |
| Start 158: pyinit::nrniv_py3.11_python_check_sys_prefix::preparation | |
| Start 160: pyinit::nrniv_py3.11_nrnpython_check_sys_prefix::preparation | |
| Start 162: pyinit::nrniv_py3.11_python_check_sys_exec_prefix::preparation | |
| Start 164: pyinit::nrniv_py3.11_nrnpython_check_sys_exec_prefix::preparation | |
| Start 166: pyinit::nrniv_py3.11_python_check_sys_base_prefix::preparation | |
| Start 168: pyinit::nrniv_py3.11_nrnpython_check_sys_base_prefix::preparation | |
| 1/289 Test #286: olfactory-bulb-3d::neuron::preparation ............................................. Passed 0.14 sec | |
| Start 170: pyinit::nrniv_py3.11_python_check_sys_base_exec_prefix::preparation | |
| Start 172: pyinit::nrniv_py3.11_nrnpython_check_sys_base_exec_prefix::preparation | |
| Start 174: pyinit::nrniv_py3.11_python_check_sys_stderr.encoding::preparation | |
| Start 176: pyinit::nrniv_py3.11_nrnpython_check_sys_stderr.encoding::preparation | |
| 2/289 Test #288: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............................. Passed 0.19 sec | |
| Start 178: pyinit::nrniv_py3.11_python_check_sys_stdin.encoding::preparation | |
| Start 180: pyinit::nrniv_py3.11_nrnpython_check_sys_stdin.encoding::preparation | |
| Start 182: pyinit::nrniv_py3.11_python_check_sys_stdout.encoding::preparation | |
| Start 184: pyinit::nrniv_py3.11_nrnpython_check_sys_stdout.encoding::preparation | |
| 3/289 Test #154: pyinit::nrniv_py3.11_python_check_sys_path::preparation ............................ Passed 0.69 sec | |
| Start 190: pyinit::nrniv_pydef_python_check_sys_path::preparation | |
| 4/289 Test #156: pyinit::nrniv_py3.11_nrnpython_check_sys_path::preparation ......................... Passed 0.75 sec | |
| Start 192: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation | |
| 5/289 Test #158: pyinit::nrniv_py3.11_python_check_sys_prefix::preparation .......................... Passed 0.78 sec | |
| Start 194: pyinit::nrniv_pydef_python_check_sys_prefix::preparation | |
| 6/289 Test #162: pyinit::nrniv_py3.11_python_check_sys_exec_prefix::preparation ..................... Passed 0.78 sec | |
| Start 196: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation | |
| 7/289 Test #160: pyinit::nrniv_py3.11_nrnpython_check_sys_prefix::preparation ....................... Passed 0.79 sec | |
| Start 198: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation | |
| 8/289 Test #164: pyinit::nrniv_py3.11_nrnpython_check_sys_exec_prefix::preparation .................. Passed 0.79 sec | |
| Start 200: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation | |
| 9/289 Test #168: pyinit::nrniv_py3.11_nrnpython_check_sys_base_prefix::preparation .................. Passed 0.79 sec | |
| Start 202: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation | |
| 10/289 Test #166: pyinit::nrniv_py3.11_python_check_sys_base_prefix::preparation ..................... Passed 0.81 sec | |
| Start 204: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation | |
| 11/289 Test #174: pyinit::nrniv_py3.11_python_check_sys_stderr.encoding::preparation ................. Passed 0.86 sec | |
| Start 206: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation | |
| 12/289 Test #170: pyinit::nrniv_py3.11_python_check_sys_base_exec_prefix::preparation ................ Passed 0.88 sec | |
| Start 208: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation | |
| 13/289 Test #172: pyinit::nrniv_py3.11_nrnpython_check_sys_base_exec_prefix::preparation ............. Passed 0.88 sec | |
| Start 210: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation | |
| 14/289 Test #176: pyinit::nrniv_py3.11_nrnpython_check_sys_stderr.encoding::preparation .............. Passed 0.88 sec | |
| Start 212: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation | |
| 15/289 Test #180: pyinit::nrniv_py3.11_nrnpython_check_sys_stdin.encoding::preparation ............... Passed 0.86 sec | |
| Start 214: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation | |
| 16/289 Test #178: pyinit::nrniv_py3.11_python_check_sys_stdin.encoding::preparation .................. Passed 0.88 sec | |
| Start 216: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation | |
| 17/289 Test #182: pyinit::nrniv_py3.11_python_check_sys_stdout.encoding::preparation ................. Passed 0.88 sec | |
| Start 218: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation | |
| 18/289 Test #184: pyinit::nrniv_py3.11_nrnpython_check_sys_stdout.encoding::preparation .............. Passed 0.89 sec | |
| Start 220: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation | |
| 19/289 Test #190: pyinit::nrniv_pydef_python_check_sys_path::preparation ............................. Passed 0.87 sec | |
| Start 228: external_ringtest::neuron | |
| 20/289 Test #192: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation .......................... Passed 0.90 sec | |
| Start 239: testcorenrn_bbcore::neuron | |
| 21/289 Test #194: pyinit::nrniv_pydef_python_check_sys_prefix::preparation ........................... Passed 0.90 sec | |
| Start 240: testcorenrn_bbcore::coreneuron_cpu_online | |
| 22/289 Test #198: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ...................... Passed 0.89 sec | |
| Start 241: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 23/289 Test #196: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation ........................ Passed 0.91 sec | |
| Start 243: testcorenrn_conc::neuron | |
| 24/289 Test #200: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation ................... Passed 0.90 sec | |
| Start 244: testcorenrn_conc::coreneuron_cpu_online | |
| 25/289 Test #204: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation ................... Passed 0.91 sec | |
| Start 245: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 26/289 Test #202: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ...................... Passed 0.93 sec | |
| Start 247: testcorenrn_deriv::neuron | |
| 27/289 Test #206: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation ................. Passed 0.89 sec | |
| Start 248: testcorenrn_deriv::coreneuron_cpu_online | |
| 28/289 Test #208: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation .............. Passed 0.89 sec | |
| Start 249: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 29/289 Test #210: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation .................. Passed 0.90 sec | |
| Start 255: testcorenrn_kin::neuron | |
| 30/289 Test #212: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation ............... Passed 0.90 sec | |
| Start 256: testcorenrn_kin::coreneuron_cpu_online | |
| 31/289 Test #216: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ................ Passed 0.90 sec | |
| Start 257: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 32/289 Test #218: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation .................. Passed 0.90 sec | |
| Start 277: channel_benchmark_hippo::neuron | |
| 33/289 Test #214: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation ................... Passed 0.93 sec | |
| Start 278: channel_benchmark_hippo::coreneuron_cpu_online | |
| 34/289 Test #220: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation ............... Passed 0.91 sec | |
| Start 279: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 35/289 Test #228: external_ringtest::neuron .......................................................... Passed 3.18 sec | |
| Start 281: channel_benchmark_sscx::neuron | |
| 36/289 Test #239: testcorenrn_bbcore::neuron ......................................................... Passed 3.24 sec | |
| Start 282: channel_benchmark_sscx::coreneuron_cpu_online | |
| 37/289 Test #243: testcorenrn_conc::neuron ........................................................... Passed 4.65 sec | |
| Start 283: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 38/289 Test #240: testcorenrn_bbcore::coreneuron_cpu_online .......................................... Passed 4.93 sec | |
| Start 1: cmd_interface_test | |
| 39/289 Test #1: cmd_interface_test ................................................................. Passed 0.03 sec | |
| Start 2: interleave_info_constructor_test | |
| 40/289 Test #2: interleave_info_constructor_test ................................................... Passed 0.03 sec | |
| Start 3: alignment_test | |
| 41/289 Test #3: alignment_test ..................................................................... Passed 0.03 sec | |
| Start 4: queuing_test | |
| 42/289 Test #4: queuing_test ....................................................................... Passed 0.03 sec | |
| Start 5: test-solver | |
| 43/289 Test #5: test-solver ........................................................................ Passed 0.06 sec | |
| Start 6: random_test | |
| 44/289 Test #6: random_test ........................................................................ Passed 0.04 sec | |
| Start 7: unit_tests::testneuron | |
| 45/289 Test #7: unit_tests::testneuron ............................................................. Passed 0.08 sec | |
| Start 8: unit_tests::testneuron_soa_erase_calls_terminate | |
| 46/289 Test #247: testcorenrn_deriv::neuron .......................................................... Passed 5.21 sec | |
| Start 9: ringtest | |
| 47/289 Test #255: testcorenrn_kin::neuron ............................................................ Passed 5.08 sec | |
| Start 10: connect_dend | |
| 48/289 Test #8: unit_tests::testneuron_soa_erase_calls_terminate ................................... Passed 0.10 sec | |
| Start 11: mpi_init::nrniv_mpiopt | |
| 49/289 Test #241: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......................... Passed 5.35 sec | |
| Start 12: mpi_init::nrniv_nrnmpi_init | |
| 50/289 Test #11: mpi_init::nrniv_mpiopt ............................................................. Passed 0.17 sec | |
| Start 13: mpi_init::python_nrnmpi_init | |
| 51/289 Test #12: mpi_init::nrniv_nrnmpi_init ........................................................ Passed 0.16 sec | |
| Start 14: mpi_init::python_mpienv | |
| 52/289 Test #244: testcorenrn_conc::coreneuron_cpu_online ............................................ Passed 5.57 sec | |
| Start 15: mpi_init::nrniv_mpiexec_mpiopt | |
| 53/289 Test #10: connect_dend ....................................................................... Passed 0.28 sec | |
| Start 16: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 54/289 Test #9: ringtest ........................................................................... Passed 0.36 sec | |
| Start 17: mpi_init::python_mpiexec_nrnmpi_init | |
| 55/289 Test #245: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........................... Passed 5.78 sec | |
| Start 18: mpi_init::python_mpiexec_mpienv | |
| 56/289 Test #256: testcorenrn_kin::coreneuron_cpu_online ............................................. Passed 5.62 sec | |
| Start 19: unit_tests::python_unit_tests | |
| 57/289 Test #248: testcorenrn_deriv::coreneuron_cpu_online ........................................... Passed 5.68 sec | |
| Start 20: pytest::basic_tests_py3.11 | |
| 58/289 Test #249: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......................... Passed 5.74 sec | |
| Start 21: pytest_coreneuron::basic_tests_py3.11 | |
| 59/289 Test #257: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............................ Passed 5.69 sec | |
| Start 22: datahandle::datahandle_tests | |
| 60/289 Test #14: mpi_init::python_mpienv ............................................................ Passed 0.58 sec | |
| Start 23: coverage_tests::cover_tests | |
| 61/289 Test #13: mpi_init::python_nrnmpi_init ....................................................... Passed 0.62 sec | |
| Start 24: example_nmodl::ca_ap_hoc | |
| 62/289 Test #24: example_nmodl::ca_ap_hoc ........................................................... Passed 0.92 sec | |
| Start 25: example_nmodl::cabpump_hoc | |
| 63/289 Test #25: example_nmodl::cabpump_hoc ......................................................... Passed 1.41 sec | |
| Start 26: example_nmodl::cachan_hoc | |
| 64/289 Test #15: mpi_init::nrniv_mpiexec_mpiopt ..................................................... Passed 3.34 sec | |
| Start 27: example_nmodl::cadif_hoc | |
| 65/289 Test #16: mpi_init::nrniv_mpiexec_nrnmpi_init ................................................ Passed 3.41 sec | |
| Start 28: example_nmodl::cadifusl_hoc | |
| 66/289 Test #26: example_nmodl::cachan_hoc .......................................................... Passed 0.67 sec | |
| Start 29: example_nmodl::cadifusl1_hoc | |
| 67/289 Test #27: example_nmodl::cadif_hoc ........................................................... Passed 0.63 sec | |
| Start 30: example_nmodl::cadifusl2_hoc | |
| 68/289 Test #28: example_nmodl::cadifusl_hoc ........................................................ Passed 0.59 sec | |
| Start 31: example_nmodl::cagk_hoc | |
| 69/289 Test #29: example_nmodl::cadifusl1_hoc ....................................................... Passed 0.53 sec | |
| Start 32: example_nmodl::capmp_hoc | |
| 70/289 Test #31: example_nmodl::cagk_hoc ............................................................ Passed 0.32 sec | |
| Start 33: example_nmodl::cv_hoc | |
| 71/289 Test #30: example_nmodl::cadifusl2_hoc ....................................................... Passed 0.38 sec | |
| Start 34: example_nmodl::fh_hoc | |
| 72/289 Test #32: example_nmodl::capmp_hoc ........................................................... Passed 0.62 sec | |
| Start 35: example_nmodl::fit1_hoc | |
| 73/289 Test #33: example_nmodl::cv_hoc .............................................................. Passed 0.45 sec | |
| Start 36: example_nmodl::gap_hoc | |
| 74/289 Test #17: mpi_init::python_mpiexec_nrnmpi_init ............................................... Passed 4.75 sec | |
| Start 37: example_nmodl::hh1_hoc | |
| 75/289 Test #18: mpi_init::python_mpiexec_mpienv .................................................... Passed 4.64 sec | |
| Start 38: example_nmodl::hhvect_hoc | |
| 76/289 Test #34: example_nmodl::fh_hoc .............................................................. Passed 0.61 sec | |
| Start 39: example_nmodl::nacum_hoc | |
| 77/289 Test #35: example_nmodl::fit1_hoc ............................................................ Passed 0.41 sec | |
| Start 40: example_nmodl::nadifl1_hoc | |
| 78/289 Test #37: example_nmodl::hh1_hoc ............................................................. Passed 0.63 sec | |
| Start 41: example_nmodl::nadifl2_hoc | |
| 79/289 Test #36: example_nmodl::gap_hoc ............................................................. Passed 0.72 sec | |
| Start 42: example_nmodl::nadifl3_hoc | |
| 80/289 Test #38: example_nmodl::hhvect_hoc .......................................................... Passed 0.66 sec | |
| Start 43: example_nmodl::nadifl4_hoc | |
| 81/289 Test #39: example_nmodl::nacum_hoc ........................................................... Passed 0.61 sec | |
| Start 44: example_nmodl::obj_ex_hoc | |
| 82/289 Test #40: example_nmodl::nadifl1_hoc ......................................................... Passed 0.50 sec | |
| Start 45: example_nmodl::order_hoc | |
| 83/289 Test #41: example_nmodl::nadifl2_hoc ......................................................... Passed 0.76 sec | |
| Start 46: example_nmodl::passiv_hoc | |
| 84/289 Test #44: example_nmodl::obj_ex_hoc .......................................................... Passed 0.69 sec | |
| Start 47: example_nmodl::stim1_hoc | |
| 85/289 Test #42: example_nmodl::nadifl3_hoc ......................................................... Passed 0.78 sec | |
| Start 48: example_nmodl::syn1_hoc | |
| 86/289 Test #45: example_nmodl::order_hoc ........................................................... Passed 0.99 sec | |
| Start 49: example_nmodl::synpre_hoc | |
| 87/289 Test #43: example_nmodl::nadifl4_hoc ......................................................... Passed 1.10 sec | |
| Start 50: example_nmodl::tstextrn_hoc | |
| 88/289 Test #46: example_nmodl::passiv_hoc .......................................................... Passed 0.52 sec | |
| Start 51: example_nmodl::tstpnt1_hoc | |
| 89/289 Test #47: example_nmodl::stim1_hoc ........................................................... Passed 0.45 sec | |
| Start 52: example_nmodl::tstpnt2_hoc | |
| 90/289 Test #48: example_nmodl::syn1_hoc ............................................................ Passed 0.45 sec | |
| Start 53: example_nmodl::tstvec_hoc | |
| 91/289 Test #50: example_nmodl::tstextrn_hoc ........................................................ Passed 0.34 sec | |
| Start 54: example_nmodl::cagkftab_py | |
| 92/289 Test #49: example_nmodl::synpre_hoc .......................................................... Passed 0.50 sec | |
| Start 55: example_nmodl::expsynspine_py | |
| 93/289 Test #52: example_nmodl::tstpnt2_hoc ......................................................... Passed 0.39 sec | |
| Start 56: example_nmodl::nonlin_py | |
| 94/289 Test #51: example_nmodl::tstpnt1_hoc ......................................................... Passed 0.45 sec | |
| Start 57: example_nmodl::tstpnt1_py | |
| 95/289 Test #53: example_nmodl::tstvec_hoc .......................................................... Passed 0.44 sec | |
| Start 58: example_nmodl::tstpnt2_py | |
| 96/289 Test #19: unit_tests::python_unit_tests ...................................................... Passed 7.27 sec | |
| Start 59: example_nmodl::vlag_py | |
| 97/289 Test #22: datahandle::datahandle_tests ....................................................... Passed 7.30 sec | |
| Start 60: hoctests::test_loadbal_hoc | |
| 98/289 Test #20: pytest::basic_tests_py3.11 ......................................................... Passed 7.40 sec | |
| Start 61: hoctests::test_random_hoc | |
| 99/289 Test #57: example_nmodl::tstpnt1_py .......................................................... Passed 0.85 sec | |
| Start 62: hoctests::perf1_hoc | |
| 100/289 Test #23: coverage_tests::cover_tests ........................................................ Passed 7.52 sec | |
| Start 63: hoctests::test1_hoc | |
| 101/289 Test #60: hoctests::test_loadbal_hoc ......................................................... Passed 0.36 sec | |
| Start 64: hoctests::test2_hoc | |
| 102/289 Test #61: hoctests::test_random_hoc .......................................................... Passed 0.40 sec | |
| Start 65: hoctests::test3_hoc | |
| 103/289 Test #55: example_nmodl::expsynspine_py ...................................................... Passed 1.07 sec | |
| Start 66: hoctests::test4_hoc | |
| 104/289 Test #66: hoctests::test4_hoc ................................................................ Passed 0.29 sec | |
| Start 67: hoctests::test5_hoc | |
| 105/289 Test #63: hoctests::test1_hoc ................................................................ Passed 0.45 sec | |
| Start 68: hoctests::test6_hoc | |
| 106/289 Test #64: hoctests::test2_hoc ................................................................ Passed 0.46 sec | |
| Start 69: hoctests::test7_hoc | |
| 107/289 Test #65: hoctests::test3_hoc ................................................................ Passed 0.44 sec | |
| Start 70: hoctests::test8_hoc | |
| 108/289 Test #58: example_nmodl::tstpnt2_py .......................................................... Passed 1.38 sec | |
| Start 71: hoctests::test9_hoc | |
| 109/289 Test #59: example_nmodl::vlag_py ............................................................. Passed 1.17 sec | |
| Start 72: hoctests::test_bbss_py | |
| 110/289 Test #62: hoctests::perf1_hoc ................................................................ Passed 0.75 sec | |
| Start 73: hoctests::test_cvinterp_py | |
| 111/289 Test #68: hoctests::test6_hoc ................................................................ Passed 0.47 sec | |
| Start 74: hoctests::test_hocGUI2_py | |
| 112/289 Test #69: hoctests::test7_hoc ................................................................ Passed 0.45 sec | |
| Start 75: hoctests::test_hoc_class_instance_py | |
| 113/289 Test #67: hoctests::test5_hoc ................................................................ Passed 0.58 sec | |
| Start 76: hoctests::test_hocmech_py | |
| 114/289 Test #56: example_nmodl::nonlin_py ........................................................... Passed 2.04 sec | |
| Start 77: hoctests::test_kschan_py | |
| 115/289 Test #70: hoctests::test8_hoc ................................................................ Passed 0.61 sec | |
| Start 78: hoctests::test_legacy_setpointer_py | |
| 116/289 Test #71: hoctests::test9_hoc ................................................................ Passed 0.65 sec | |
| Start 79: hoctests::test_mechfunc_py | |
| 117/289 Test #72: hoctests::test_bbss_py ............................................................. Passed 1.12 sec | |
| Start 80: hoctests::test_mechstd_py | |
| 118/289 Test #73: hoctests::test_cvinterp_py ......................................................... Passed 1.28 sec | |
| Start 81: hoctests::test_mode_py | |
| 119/289 Test #54: example_nmodl::cagkftab_py ......................................................... Passed 3.07 sec | |
| Start 82: hoctests::test_neurondemo_py | |
| 120/289 Test #75: hoctests::test_hoc_class_instance_py ...............................................***Failed 1.30 sec | |
| h.Vector[0] | |
| Traceback (most recent call last): | |
| File "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265063/spack-build/spack-stage-neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b_develop-2axlnbootcf7duaejyuwj65gqpo4kyvn/spack-build-2axlnbo/test/hoctests/test_hoc_class_instance_py/tests/test_hoc_class_instance.py", line 28, in <module> | |
| test1() | |
| File "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265063/spack-build/spack-stage-neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b_develop-2axlnbootcf7duaejyuwj65gqpo4kyvn/spack-build-2axlnbo/test/hoctests/test_hoc_class_instance_py/tests/test_hoc_class_instance.py", line 18, in test1 | |
| exec(vstr + ".resize(10)") | |
| File "<string>", line 1, in <module> | |
| TypeError: type 'hoc.Vector' is not subscriptable | |
| Start 83: hoctests::test_nrniv-launch_py | |
| 121/289 Test #76: hoctests::test_hocmech_py .......................................................... Passed 1.28 sec | |
| Start 84: hoctests::test_optim_node_order_py | |
| 122/289 Test #74: hoctests::test_hocGUI2_py .......................................................... Passed 1.49 sec | |
| Start 85: hoctests::test_random_py | |
| 123/289 Test #78: hoctests::test_legacy_setpointer_py ................................................ Passed 1.29 sec | |
| Start 86: hoctests::test_setdata_py | |
| 124/289 Test #79: hoctests::test_mechfunc_py ......................................................... Passed 1.40 sec | |
| Start 87: hoctests::test_shape_py | |
| 125/289 Test #77: hoctests::test_kschan_py ........................................................... Passed 1.73 sec | |
| Start 88: hoctests::test_thread_partition_py | |
| 126/289 Test #83: hoctests::test_nrniv-launch_py ..................................................... Passed 0.89 sec | |
| Start 89: hoctests::test1_py | |
| 127/289 Test #80: hoctests::test_mechstd_py .......................................................... Passed 1.32 sec | |
| Start 90: hoctests::test2_py | |
| 128/289 Test #82: hoctests::test_neurondemo_py ....................................................... Passed 1.35 sec | |
| Start 91: hoctests::test9_py | |
| 129/289 Test #81: hoctests::test_mode_py ............................................................. Passed 1.52 sec | |
| Start 97: nmodl_tests::test_table | |
| 130/289 Test #86: hoctests::test_setdata_py .......................................................... Passed 1.22 sec | |
| Start 98: nmodl_tests::test_disc | |
| 131/289 Test #85: hoctests::test_random_py ........................................................... Passed 1.40 sec | |
| Start 99: nmodl_tests::test_function_table | |
| 132/289 Test #84: hoctests::test_optim_node_order_py ................................................. Passed 1.55 sec | |
| Start 100: nmodl_tests::test_kinetic | |
| 133/289 Test #87: hoctests::test_shape_py ............................................................ Passed 1.37 sec | |
| Start 101: nmodl_tests::test_random | |
| 134/289 Test #88: hoctests::test_thread_partition_py ................................................. Passed 1.23 sec | |
| Start 102: nmodl_tests::test_path_spaces | |
| 135/289 Test #90: hoctests::test2_py ................................................................. Passed 1.22 sec | |
| Start 103: coreneuron_modtests::version_macros | |
| 136/289 Test #89: hoctests::test1_py ................................................................. Passed 1.28 sec | |
| Start 105: coreneuron_modtests::fornetcon_py_cpu | |
| 137/289 Test #91: hoctests::test9_py ................................................................. Passed 1.56 sec | |
| Start 106: coreneuron_modtests::direct_py_cpu | |
| 138/289 Test #97: nmodl_tests::test_table ............................................................ Passed 1.77 sec | |
| Start 107: coreneuron_modtests::direct_hoc_cpu | |
| 139/289 Test #101: nmodl_tests::test_random ........................................................... Passed 1.46 sec | |
| Start 108: coreneuron_modtests::spikes_py_cpu | |
| 140/289 Test #98: nmodl_tests::test_disc ............................................................. Passed 1.85 sec | |
| Start 109: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 141/289 Test #99: nmodl_tests::test_function_table ................................................... Passed 1.71 sec | |
| Start 110: coreneuron_modtests::fast_imem_py_cpu | |
| 142/289 Test #100: nmodl_tests::test_kinetic .......................................................... Passed 1.88 sec | |
| Start 111: coreneuron_modtests::datareturn_py_cpu | |
| 143/289 Test #21: pytest_coreneuron::basic_tests_py3.11 .............................................. Passed 13.79 sec | |
| Start 112: coreneuron_modtests::test_units_py_cpu | |
| 144/289 Test #105: coreneuron_modtests::fornetcon_py_cpu .............................................. Passed 1.84 sec | |
| Start 113: coreneuron_modtests::test_netmove_py_cpu | |
| 145/289 Test #103: coreneuron_modtests::version_macros ................................................ Passed 1.95 sec | |
| Start 114: coreneuron_modtests::test_pointer_py_cpu | |
| 146/289 Test #107: coreneuron_modtests::direct_hoc_cpu ................................................ Passed 1.81 sec | |
| Start 115: coreneuron_modtests::test_watchrange_py_cpu | |
| 147/289 Test #106: coreneuron_modtests::direct_py_cpu ................................................. Passed 2.23 sec | |
| Start 116: coreneuron_modtests::test_psolve_py_cpu | |
| 148/289 Test #108: coreneuron_modtests::spikes_py_cpu ................................................. Passed 2.02 sec | |
| Start 117: coreneuron_modtests::test_ba_py_cpu | |
| 149/289 Test #109: coreneuron_modtests::spikes_file_mode_py_cpu ....................................... Passed 2.16 sec | |
| Start 118: coreneuron_modtests::test_nmodlrandom_py_cpu | |
| 150/289 Test #111: coreneuron_modtests::datareturn_py_cpu ............................................. Passed 2.19 sec | |
| Start 119: coreneuron_modtests::test_nmodlrandom_syntax_py_cpu | |
| 151/289 Test #112: coreneuron_modtests::test_units_py_cpu ............................................. Passed 1.88 sec | |
| Start 120: coreneuron_modtests::test_natrans_py_cpu | |
| 152/289 Test #110: coreneuron_modtests::fast_imem_py_cpu .............................................. Passed 2.60 sec | |
| Start 121: coreneuron_modtests::array_variable_transfer_run_mode_0_py_cpu | |
| 153/289 Test #113: coreneuron_modtests::test_netmove_py_cpu ........................................... Passed 2.53 sec | |
| Start 122: coreneuron_modtests::array_variable_transfer_run_mode_1_py_cpu | |
| 154/289 Test #117: coreneuron_modtests::test_ba_py_cpu ................................................ Passed 1.62 sec | |
| Start 123: coreneuron_modtests::array_variable_transfer_run_mode_2_py_cpu | |
| 155/289 Test #115: coreneuron_modtests::test_watchrange_py_cpu ........................................ Passed 1.99 sec | |
| Start 124: coreneuron_modtests::array_variable_transfer_file_mode_py_cpu | |
| 156/289 Test #116: coreneuron_modtests::test_psolve_py_cpu ............................................ Passed 2.20 sec | |
| Start 127: nmodl_tests_coreneuron::test_table_coreneuron_cpu | |
| 157/289 Test #120: coreneuron_modtests::test_natrans_py_cpu ........................................... Passed 1.57 sec | |
| Start 128: nmodl_tests_coreneuron::test_disc_coreneuron_cpu | |
| 158/289 Test #121: coreneuron_modtests::array_variable_transfer_run_mode_0_py_cpu ..................... Passed 1.94 sec | |
| Start 129: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu | |
| 159/289 Test #118: coreneuron_modtests::test_nmodlrandom_py_cpu ....................................... Passed 2.69 sec | |
| Start 130: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu | |
| 160/289 Test #114: coreneuron_modtests::test_pointer_py_cpu ........................................... Passed 4.14 sec | |
| Start 131: modlunit_unitstest | |
| 161/289 Test #131: modlunit_unitstest ................................................................. Passed 0.11 sec | |
| Start 132: modlunit_hh | |
| 162/289 Test #122: coreneuron_modtests::array_variable_transfer_run_mode_1_py_cpu ..................... Passed 1.86 sec | |
| Start 133: modlunit_stim | |
| 163/289 Test #132: modlunit_hh ........................................................................ Passed 0.10 sec | |
| Start 134: modlunit_pattern | |
| 164/289 Test #134: modlunit_pattern ................................................................... Passed 0.10 sec | |
| Start 135: modlunit_rand | |
| 165/289 Test #135: modlunit_rand ...................................................................... Passed 0.03 sec | |
| Start 136: pyinit::nrniv_script.py | |
| 166/289 Test #133: modlunit_stim ...................................................................... Passed 0.17 sec | |
| Start 137: pyinit::nrniv_script.py_error | |
| 167/289 Test #124: coreneuron_modtests::array_variable_transfer_file_mode_py_cpu ...................... Passed 1.90 sec | |
| Start 138: pyinit::nrniv_two_scripts.py | |
| 168/289 Test #123: coreneuron_modtests::array_variable_transfer_run_mode_2_py_cpu ..................... Passed 2.14 sec | |
| Start 139: pyinit::nrniv_two_scripts.py_error_check_code | |
| 169/289 Test #137: pyinit::nrniv_script.py_error ...................................................... Passed 0.43 sec | |
| Start 140: pyinit::nrniv_two_scripts.py_error_check_output | |
| 170/289 Test #128: nmodl_tests_coreneuron::test_disc_coreneuron_cpu ................................... Passed 1.81 sec | |
| Start 141: pyinit::nrniv_python_command | |
| 171/289 Test #136: pyinit::nrniv_script.py ............................................................ Passed 0.58 sec | |
| Start 142: pyinit::nrniv_python_command_error | |
| 172/289 Test #127: nmodl_tests_coreneuron::test_table_coreneuron_cpu .................................. Passed 1.93 sec | |
| Start 143: pyinit::nrniv_python_script.py | |
| 173/289 Test #138: pyinit::nrniv_two_scripts.py ....................................................... Passed 0.63 sec | |
| Start 144: pyinit::nrniv_python_script.py_error | |
| 174/289 Test #139: pyinit::nrniv_two_scripts.py_error_check_code ...................................... Passed 0.46 sec | |
| Start 145: pyinit::nrniv_python_command_twice | |
| 175/289 Test #140: pyinit::nrniv_two_scripts.py_error_check_output .................................... Passed 0.46 sec | |
| Start 146: pyinit::nrniv_python_script.py_twice | |
| 176/289 Test #119: coreneuron_modtests::test_nmodlrandom_syntax_py_cpu ................................ Passed 3.91 sec | |
| Start 147: pyinit::nrniv_python_command_args | |
| 177/289 Test #141: pyinit::nrniv_python_command ....................................................... Passed 0.51 sec | |
| Start 148: pyinit::nrniv_python_script.py_args | |
| 178/289 Test #143: pyinit::nrniv_python_script.py ..................................................... Passed 0.47 sec | |
| Start 149: pyinit::nrniv_nopython_PythonObject | |
| 179/289 Test #142: pyinit::nrniv_python_command_error ................................................. Passed 0.55 sec | |
| Start 150: pyinit::nrniv_nopython_PythonObject_pyexe | |
| 180/289 Test #144: pyinit::nrniv_python_script.py_error ............................................... Passed 0.42 sec | |
| Start 151: pyinit::nrniv_nopython_PythonObject_pyenv | |
| 181/289 Test #129: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ......................... Passed 2.08 sec | |
| Start 152: pyinit::nrniv_py3.11_python_command_version_check | |
| 182/289 Test #145: pyinit::nrniv_python_command_twice ................................................. Passed 0.59 sec | |
| Start 153: pyinit::nrniv_py3.11_python_check_sys_path | |
| 183/289 Test #146: pyinit::nrniv_python_script.py_twice ............................................... Passed 0.67 sec | |
| Start 155: pyinit::nrniv_py3.11_nrnpython_check_sys_path | |
| 184/289 Test #150: pyinit::nrniv_nopython_PythonObject_pyexe .......................................... Passed 0.66 sec | |
| Start 157: pyinit::nrniv_py3.11_python_check_sys_prefix | |
| 185/289 Test #148: pyinit::nrniv_python_script.py_args ................................................ Passed 0.72 sec | |
| Start 159: pyinit::nrniv_py3.11_nrnpython_check_sys_prefix | |
| 186/289 Test #147: pyinit::nrniv_python_command_args .................................................. Passed 0.78 sec | |
| Start 161: pyinit::nrniv_py3.11_python_check_sys_exec_prefix | |
| 187/289 Test #130: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ................................ Passed 2.35 sec | |
| Start 163: pyinit::nrniv_py3.11_nrnpython_check_sys_exec_prefix | |
| 188/289 Test #149: pyinit::nrniv_nopython_PythonObject ................................................ Passed 0.89 sec | |
| Start 165: pyinit::nrniv_py3.11_python_check_sys_base_prefix | |
| 189/289 Test #151: pyinit::nrniv_nopython_PythonObject_pyenv .......................................... Passed 0.99 sec | |
| Start 167: pyinit::nrniv_py3.11_nrnpython_check_sys_base_prefix | |
| 190/289 Test #152: pyinit::nrniv_py3.11_python_command_version_check .................................. Passed 1.10 sec | |
| Start 169: pyinit::nrniv_py3.11_python_check_sys_base_exec_prefix | |
| 191/289 Test #153: pyinit::nrniv_py3.11_python_check_sys_path ......................................... Passed 1.26 sec | |
| Start 171: pyinit::nrniv_py3.11_nrnpython_check_sys_base_exec_prefix | |
| 192/289 Test #155: pyinit::nrniv_py3.11_nrnpython_check_sys_path ...................................... Passed 1.18 sec | |
| Start 173: pyinit::nrniv_py3.11_python_check_sys_stderr.encoding | |
| 193/289 Test #161: pyinit::nrniv_py3.11_python_check_sys_exec_prefix .................................. Passed 1.14 sec | |
| Start 175: pyinit::nrniv_py3.11_nrnpython_check_sys_stderr.encoding | |
| 194/289 Test #157: pyinit::nrniv_py3.11_python_check_sys_prefix ....................................... Passed 1.17 sec | |
| Start 177: pyinit::nrniv_py3.11_python_check_sys_stdin.encoding | |
| 195/289 Test #159: pyinit::nrniv_py3.11_nrnpython_check_sys_prefix .................................... Passed 1.19 sec | |
| Start 179: pyinit::nrniv_py3.11_nrnpython_check_sys_stdin.encoding | |
| 196/289 Test #163: pyinit::nrniv_py3.11_nrnpython_check_sys_exec_prefix ............................... Passed 1.12 sec | |
| Start 181: pyinit::nrniv_py3.11_python_check_sys_stdout.encoding | |
| 197/289 Test #165: pyinit::nrniv_py3.11_python_check_sys_base_prefix .................................. Passed 1.09 sec | |
| Start 183: pyinit::nrniv_py3.11_nrnpython_check_sys_stdout.encoding | |
| 198/289 Test #167: pyinit::nrniv_py3.11_nrnpython_check_sys_base_prefix ............................... Passed 1.01 sec | |
| Start 185: pyinit::nrniv_py3.11_python_command_import_neuron | |
| 199/289 Test #279: channel_benchmark_hippo::coreneuron_cpu_filemode ................................... Passed 27.42 sec | |
| Start 186: pyinit::py3.11_command_import_neuron | |
| 200/289 Test #102: nmodl_tests::test_path_spaces ...................................................... Passed 10.04 sec | |
| Start 187: pyinit::nrniv_py3.11_hoc_command_nrnpython | |
| 201/289 Test #281: channel_benchmark_sscx::neuron ..................................................... Passed 24.75 sec | |
| Start 188: pyinit::nrniv_pydef_python_command_version_check | |
| 202/289 Test #169: pyinit::nrniv_py3.11_python_check_sys_base_exec_prefix ............................. Passed 0.99 sec | |
| Start 189: pyinit::nrniv_pydef_python_check_sys_path | |
| 203/289 Test #277: channel_benchmark_hippo::neuron .................................................... Passed 27.60 sec | |
| Start 191: pyinit::nrniv_pydef_nrnpython_check_sys_path | |
| 204/289 Test #278: channel_benchmark_hippo::coreneuron_cpu_online ..................................... Passed 27.73 sec | |
| Start 193: pyinit::nrniv_pydef_python_check_sys_prefix | |
| 205/289 Test #171: pyinit::nrniv_py3.11_nrnpython_check_sys_base_exec_prefix .......................... Passed 1.11 sec | |
| Start 195: pyinit::nrniv_pydef_nrnpython_check_sys_prefix | |
| 206/289 Test #173: pyinit::nrniv_py3.11_python_check_sys_stderr.encoding .............................. Passed 1.17 sec | |
| Start 197: pyinit::nrniv_pydef_python_check_sys_exec_prefix | |
| 207/289 Test #177: pyinit::nrniv_py3.11_python_check_sys_stdin.encoding ............................... Passed 1.21 sec | |
| Start 199: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix | |
| 208/289 Test #175: pyinit::nrniv_py3.11_nrnpython_check_sys_stderr.encoding ........................... Passed 1.26 sec | |
| Start 201: pyinit::nrniv_pydef_python_check_sys_base_prefix | |
| 209/289 Test #179: pyinit::nrniv_py3.11_nrnpython_check_sys_stdin.encoding ............................ Passed 1.24 sec | |
| Start 203: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix | |
| 210/289 Test #181: pyinit::nrniv_py3.11_python_check_sys_stdout.encoding .............................. Passed 1.28 sec | |
| Start 205: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix | |
| 211/289 Test #183: pyinit::nrniv_py3.11_nrnpython_check_sys_stdout.encoding ........................... Passed 1.31 sec | |
| Start 207: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix | |
| 212/289 Test #187: pyinit::nrniv_py3.11_hoc_command_nrnpython ......................................... Passed 1.16 sec | |
| Start 209: pyinit::nrniv_pydef_python_check_sys_stderr.encoding | |
| 213/289 Test #188: pyinit::nrniv_pydef_python_command_version_check ................................... Passed 1.22 sec | |
| Start 211: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding | |
| 214/289 Test #189: pyinit::nrniv_pydef_python_check_sys_path .......................................... Passed 1.44 sec | |
| Start 213: pyinit::nrniv_pydef_python_check_sys_stdin.encoding | |
| 215/289 Test #191: pyinit::nrniv_pydef_nrnpython_check_sys_path ....................................... Passed 1.44 sec | |
| Start 215: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding | |
| 216/289 Test #193: pyinit::nrniv_pydef_python_check_sys_prefix ........................................ Passed 1.44 sec | |
| Start 217: pyinit::nrniv_pydef_python_check_sys_stdout.encoding | |
| 217/289 Test #195: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ..................................... Passed 1.49 sec | |
| Start 219: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding | |
| 218/289 Test #197: pyinit::nrniv_pydef_python_check_sys_exec_prefix ................................... Passed 1.46 sec | |
| Start 221: pyinit::nrniv_pydef_python_command_import_neuron | |
| 219/289 Test #199: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ................................ Passed 1.42 sec | |
| Start 222: pyinit::pydef_command_import_neuron | |
| 220/289 Test #282: channel_benchmark_sscx::coreneuron_cpu_online ...................................... Passed 26.84 sec | |
| Start 223: pyinit::nrniv_pydef_hoc_command_nrnpython | |
| 221/289 Test #201: pyinit::nrniv_pydef_python_check_sys_base_prefix ................................... Passed 1.48 sec | |
| Start 224: external_nrntest | |
| 222/289 Test #203: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ................................ Passed 1.48 sec | |
| Start 231: external_ringtest_nrn::optim_node_order | |
| 223/289 Test #205: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix .............................. Passed 1.48 sec | |
| Start 242: testcorenrn_bbcore::compare_results | |
| 224/289 Test #207: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix ........................... Passed 1.44 sec | |
| Start 246: testcorenrn_conc::compare_results | |
| 225/289 Test #186: pyinit::py3.11_command_import_neuron ............................................... Passed 2.65 sec | |
| Start 250: testcorenrn_deriv::compare_results | |
| 226/289 Test #209: pyinit::nrniv_pydef_python_check_sys_stderr.encoding ............................... Passed 1.47 sec | |
| Start 258: testcorenrn_kin::compare_results | |
| 227/289 Test #211: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding ............................ Passed 1.45 sec | |
| Start 280: channel_benchmark_hippo::compare_results | |
| 228/289 Test #185: pyinit::nrniv_py3.11_python_command_import_neuron .................................. Passed 3.01 sec | |
| 229/289 Test #213: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ................................ Passed 1.46 sec | |
| Start 229: external_ringtest::neuron_mpi | |
| 230/289 Test #215: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ............................. Passed 1.51 sec | |
| 231/289 Test #242: testcorenrn_bbcore::compare_results ................................................ Passed 0.65 sec | |
| Start 230: external_ringtest::neuron_mpi_python | |
| 232/289 Test #246: testcorenrn_conc::compare_results .................................................. Passed 0.62 sec | |
| 233/289 Test #217: pyinit::nrniv_pydef_python_check_sys_stdout.encoding ............................... Passed 1.45 sec | |
| Start 232: external_ringtest::coreneuron_cpu_mpi | |
| 234/289 Test #250: testcorenrn_deriv::compare_results ................................................. Passed 0.59 sec | |
| 235/289 Test #258: testcorenrn_kin::compare_results ................................................... Passed 0.61 sec | |
| Start 234: external_ringtest::coreneuron_mpi_registermapping_directmode | |
| 236/289 Test #280: channel_benchmark_hippo::compare_results ........................................... Passed 0.57 sec | |
| 237/289 Test #219: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding ............................ Passed 1.31 sec | |
| Start 235: external_ringtest::coreneuron_mpi_registermapping_filemode | |
| 238/289 Test #283: channel_benchmark_sscx::coreneuron_cpu_filemode .................................... Passed 26.52 sec | |
| Start 284: channel_benchmark_sscx::compare_results | |
| 239/289 Test #223: pyinit::nrniv_pydef_hoc_command_nrnpython .......................................... Passed 1.13 sec | |
| 240/289 Test #284: channel_benchmark_sscx::compare_results ............................................ Passed 0.22 sec | |
| Start 251: testcorenrn_gf::neuron | |
| 241/289 Test #222: pyinit::pydef_command_import_neuron ................................................ Passed 1.55 sec | |
| 242/289 Test #221: pyinit::nrniv_pydef_python_command_import_neuron ................................... Passed 1.78 sec | |
| Start 252: testcorenrn_gf::coreneuron_cpu_online | |
| 243/289 Test #231: external_ringtest_nrn::optim_node_order ............................................ Passed 4.40 sec | |
| 244/289 Test #251: testcorenrn_gf::neuron ............................................................. Passed 4.96 sec | |
| Start 253: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 245/289 Test #252: testcorenrn_gf::coreneuron_cpu_online .............................................. Passed 5.26 sec | |
| Start 259: testcorenrn_patstim::neuron | |
| 246/289 Test #229: external_ringtest::neuron_mpi ...................................................... Passed 6.61 sec | |
| Start 261: testcorenrn_vecplay::neuron | |
| 247/289 Test #232: external_ringtest::coreneuron_cpu_mpi .............................................. Passed 6.53 sec | |
| Start 262: testcorenrn_vecplay::coreneuron_cpu_online | |
| 248/289 Test #234: external_ringtest::coreneuron_mpi_registermapping_directmode ....................... Passed 6.58 sec | |
| Start 263: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| Start 237: external_ringtest::compare_soma_report_coreneuron_mpi_registermapping_directmode | |
| 249/289 Test #237: external_ringtest::compare_soma_report_coreneuron_mpi_registermapping_directmode ... Passed 0.02 sec | |
| 250/289 Test #235: external_ringtest::coreneuron_mpi_registermapping_filemode ......................... Passed 6.56 sec | |
| Start 269: testcorenrn_watch::neuron | |
| Start 238: external_ringtest::compare_soma_report_coreneuron_mpi_registermapping_filemode | |
| 251/289 Test #238: external_ringtest::compare_soma_report_coreneuron_mpi_registermapping_filemode ..... Passed 0.04 sec | |
| 252/289 Test #230: external_ringtest::neuron_mpi_python ............................................... Passed 7.32 sec | |
| Start 270: testcorenrn_watch::coreneuron_cpu_online | |
| 253/289 Test #259: testcorenrn_patstim::neuron ........................................................ Passed 2.07 sec | |
| Start 271: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| Start 260: testcorenrn_patstim::compare_results | |
| 254/289 Test #260: testcorenrn_patstim::compare_results ............................................... Passed 0.60 sec | |
| 255/289 Test #253: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............................. Passed 5.43 sec | |
| Start 273: testcorenrn_netstimdirect::direct_netstimdirect | |
| Start 254: testcorenrn_gf::compare_results | |
| 256/289 Test #261: testcorenrn_vecplay::neuron ........................................................ Passed 4.76 sec | |
| Start 274: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 257/289 Test #254: testcorenrn_gf::compare_results .................................................... Passed 0.44 sec | |
| 258/289 Test #269: testcorenrn_watch::neuron .......................................................... Passed 4.90 sec | |
| Start 93: parallel::partrans | |
| 259/289 Test #262: testcorenrn_vecplay::coreneuron_cpu_online ......................................... Passed 5.78 sec | |
| Start 94: parallel::netpar | |
| 260/289 Test #263: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........................ Passed 5.81 sec | |
| Start 95: parallel::bas | |
| Start 264: testcorenrn_vecplay::compare_results | |
| 261/289 Test #264: testcorenrn_vecplay::compare_results ............................................... Passed 0.34 sec | |
| 262/289 Test #270: testcorenrn_watch::coreneuron_cpu_online ........................................... Passed 5.72 sec | |
| Start 96: parallel::nrntest_fast | |
| 263/289 Test #271: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......................... Passed 5.67 sec | |
| Start 104: coreneuron_modtests::inputpresyn_py | |
| Start 272: testcorenrn_watch::compare_results | |
| 264/289 Test #272: testcorenrn_watch::compare_results ................................................. Passed 0.52 sec | |
| 265/289 Test #273: testcorenrn_netstimdirect::direct_netstimdirect .................................... Passed 4.68 sec | |
| Start 125: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 266/289 Test #274: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ................... Passed 4.71 sec | |
| Start 275: testcorenrn_netstimdirect::compare_results | |
| 267/289 Test #275: testcorenrn_netstimdirect::compare_results ......................................... Passed 0.27 sec | |
| 268/289 Test #93: parallel::partrans ................................................................. Passed 4.79 sec | |
| Start 225: reduced_dentate::neuron | |
| 269/289 Test #94: parallel::netpar ................................................................... Passed 5.12 sec | |
| 270/289 Test #104: coreneuron_modtests::inputpresyn_py ................................................ Passed 4.55 sec | |
| Start 226: reduced_dentate::coreneuron_cpu | |
| 271/289 Test #125: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................................... Passed 5.46 sec | |
| 272/289 Test #95: parallel::bas ...................................................................... Passed 9.93 sec | |
| Start 265: testcorenrn_vecevent::neuron | |
| 273/289 Test #96: parallel::nrntest_fast ............................................................. Passed 9.89 sec | |
| 274/289 Test #265: testcorenrn_vecevent::neuron ....................................................... Passed 2.45 sec | |
| Start 233: external_ringtest::coreneuron_cpu_mpi_threads | |
| 275/289 Test #225: reduced_dentate::neuron ............................................................ Passed 11.32 sec | |
| Start 266: testcorenrn_vecevent::coreneuron_cpu_online | |
| 276/289 Test #233: external_ringtest::coreneuron_cpu_mpi_threads ...................................... Passed 3.86 sec | |
| Start 267: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| Start 236: external_ringtest::compare_results | |
| 277/289 Test #226: reduced_dentate::coreneuron_cpu .................................................... Passed 10.60 sec | |
| Start 285: olfactory-bulb-3d::neuron | |
| Start 227: reduced_dentate::compare_results | |
| 278/289 Test #236: external_ringtest::compare_results ................................................. Passed 0.47 sec | |
| 279/289 Test #227: reduced_dentate::compare_results ................................................... Passed 0.46 sec | |
| 280/289 Test #266: testcorenrn_vecevent::coreneuron_cpu_online ........................................ Passed 6.12 sec | |
| Start 287: olfactory-bulb-3d::coreneuron_cpu_online | |
| 281/289 Test #267: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....................... Passed 6.48 sec | |
| Start 92: parallel::subworld | |
| Start 268: testcorenrn_vecevent::compare_results | |
| 282/289 Test #268: testcorenrn_vecevent::compare_results .............................................. Passed 0.12 sec | |
| 283/289 Test #92: parallel::subworld ................................................................. Passed 3.21 sec | |
| Start 126: coreneuron_modtests::test_subworlds_py_cpu | |
| 284/289 Test #126: coreneuron_modtests::test_subworlds_py_cpu ......................................... Passed 3.25 sec | |
| 285/289 Test #287: olfactory-bulb-3d::coreneuron_cpu_online ........................................... Passed 32.82 sec | |
| 286/289 Test #285: olfactory-bulb-3d::neuron .......................................................... Passed 44.18 sec | |
| Start 289: olfactory-bulb-3d::compare_results | |
| 287/289 Test #289: olfactory-bulb-3d::compare_results ................................................. Passed 0.16 sec | |
| 288/289 Test #224: external_nrntest ................................................................... Passed 99.58 sec | |
| Start 276: tqperf::coreneuron_special | |
| 289/289 Test #276: tqperf::coreneuron_special ......................................................... Passed 8.38 sec | |
| 99% tests passed, 1 tests failed out of 289 | |
| Total Test time (real) = 139.95 sec | |
| The following tests FAILED: | |
| 75 - hoctests::test_hoc_class_instance_py (Failed) | |
| Errors while running CTest | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| srun: error: r1i7n30: task 0: Exited with exit code 1 | |
| section_end:1714627694:step_script [0Ksection_start:1714627694:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=44588 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 8 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1265075 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=44689 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1265075 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1714627696:upload_artifacts_on_failure [0Ksection_start:1714627696:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1714627698:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1714628411:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1714628411:resolve_secrets [0Ksection_start:1714628411:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3530380839, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 208761, build ref , job ID 1265081 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761, optional exclusive flag --exclusive=user, optional cpus per task flag --cpus-per-task=2, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1265081_PROD_P2160_CP1_C2 | |
| Job parameters: memory=160G, cpus_per_task=2, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 2158955 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=2 --mem=160G --exclusive=user --job-name=GL_J1265081_PROD_P2160_CP1_C2 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208761 --ntasks=16 --jobid=2158955 --cpus-per-task=2 --mem=160G --exclusive=user | |
| section_end:1714628413:prepare_executor [0Ksection_start:1714628413:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1714628424:prepare_script [0Ksection_start:1714628424:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1714628425:get_sources [0Ksection_start:1714628425:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:neuron:nmodl:nvhpc:acc:legacy (1265066)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=43076 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1265066 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1714628427:download_artifacts [0Ksection_start:1714628427:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} build-env ${SPACK_FULL_SPEC} -- ctest --no-tests=error --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n29 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20240502-0541 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265066/spack-build/spack-stage-neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b_develop-pqdm6n2kufagtcocoit5kpgfpg255jdz/spack-build-pqdm6n2 | |
| Start 263: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 268: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 279: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 283: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 289: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| Start 293: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 299: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 303: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 309: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 313: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 319: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| Start 323: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 1/385 Test #279: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............................ Passed 4.15 sec | |
| Start 328: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/385 Test #293: testcorenrn_conc::coreneuron_cpu_offline::preparation .............................. Passed 4.20 sec | |
| Start 181: pyinit::nrniv_py3.11_python_check_sys_path::preparation | |
| 3/385 Test #283: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............................ Passed 4.22 sec | |
| Start 183: pyinit::nrniv_py3.11_nrnpython_check_sys_path::preparation | |
| 4/385 Test #289: testcorenrn_conc::coreneuron_gpu_offline::preparation .............................. Passed 4.23 sec | |
| Start 185: pyinit::nrniv_py3.11_python_check_sys_prefix::preparation | |
| 5/385 Test #181: pyinit::nrniv_py3.11_python_check_sys_path::preparation ............................ Passed 0.06 sec | |
| Start 187: pyinit::nrniv_py3.11_nrnpython_check_sys_prefix::preparation | |
| 6/385 Test #183: pyinit::nrniv_py3.11_nrnpython_check_sys_path::preparation ......................... Passed 0.06 sec | |
| Start 189: pyinit::nrniv_py3.11_python_check_sys_exec_prefix::preparation | |
| 7/385 Test #185: pyinit::nrniv_py3.11_python_check_sys_prefix::preparation .......................... Passed 0.06 sec | |
| Start 191: pyinit::nrniv_py3.11_nrnpython_check_sys_exec_prefix::preparation | |
| 8/385 Test #189: pyinit::nrniv_py3.11_python_check_sys_exec_prefix::preparation ..................... Passed 0.06 sec | |
| Start 193: pyinit::nrniv_py3.11_python_check_sys_base_prefix::preparation | |
| 9/385 Test #187: pyinit::nrniv_py3.11_nrnpython_check_sys_prefix::preparation ....................... Passed 0.09 sec | |
| Start 195: pyinit::nrniv_py3.11_nrnpython_check_sys_base_prefix::preparation | |
| 10/385 Test #191: pyinit::nrniv_py3.11_nrnpython_check_sys_exec_prefix::preparation .................. Passed 0.09 sec | |
| Start 197: pyinit::nrniv_py3.11_python_check_sys_base_exec_prefix::preparation | |
| 11/385 Test #193: pyinit::nrniv_py3.11_python_check_sys_base_prefix::preparation ..................... Passed 0.07 sec | |
| Start 199: pyinit::nrniv_py3.11_nrnpython_check_sys_base_exec_prefix::preparation | |
| 12/385 Test #195: pyinit::nrniv_py3.11_nrnpython_check_sys_base_prefix::preparation .................. Passed 0.07 sec | |
| Start 201: pyinit::nrniv_py3.11_python_check_sys_stderr.encoding::preparation | |
| 13/385 Test #197: pyinit::nrniv_py3.11_python_check_sys_base_exec_prefix::preparation ................ Passed 0.07 sec | |
| Start 203: pyinit::nrniv_py3.11_nrnpython_check_sys_stderr.encoding::preparation | |
| 14/385 Test #199: pyinit::nrniv_py3.11_nrnpython_check_sys_base_exec_prefix::preparation ............. Passed 0.06 sec | |
| Start 205: pyinit::nrniv_py3.11_python_check_sys_stdin.encoding::preparation | |
| 15/385 Test #201: pyinit::nrniv_py3.11_python_check_sys_stderr.encoding::preparation ................. Passed 0.06 sec | |
| Start 207: pyinit::nrniv_py3.11_nrnpython_check_sys_stdin.encoding::preparation | |
| 16/385 Test #203: pyinit::nrniv_py3.11_nrnpython_check_sys_stderr.encoding::preparation .............. Passed 0.06 sec | |
| Start 209: pyinit::nrniv_py3.11_python_check_sys_stdout.encoding::preparation | |
| 17/385 Test #205: pyinit::nrniv_py3.11_python_check_sys_stdin.encoding::preparation .................. Passed 0.06 sec | |
| Start 211: pyinit::nrniv_py3.11_nrnpython_check_sys_stdout.encoding::preparation | |
| 18/385 Test #207: pyinit::nrniv_py3.11_nrnpython_check_sys_stdin.encoding::preparation ............... Passed 0.06 sec | |
| Start 217: pyinit::nrniv_pydef_python_check_sys_path::preparation | |
| 19/385 Test #209: pyinit::nrniv_py3.11_python_check_sys_stdout.encoding::preparation ................. Passed 0.06 sec | |
| Start 219: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation | |
| 20/385 Test #211: pyinit::nrniv_py3.11_nrnpython_check_sys_stdout.encoding::preparation .............. Passed 0.06 sec | |
| Start 221: pyinit::nrniv_pydef_python_check_sys_prefix::preparation | |
| 21/385 Test #217: pyinit::nrniv_pydef_python_check_sys_path::preparation ............................. Passed 0.06 sec | |
| Start 223: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation | |
| 22/385 Test #219: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation .......................... Passed 0.06 sec | |
| Start 225: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation | |
| 23/385 Test #221: pyinit::nrniv_pydef_python_check_sys_prefix::preparation ........................... Passed 0.06 sec | |
| Start 227: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation | |
| 24/385 Test #223: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation ........................ Passed 0.06 sec | |
| Start 229: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation | |
| 25/385 Test #225: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ...................... Passed 0.06 sec | |
| Start 231: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation | |
| 26/385 Test #227: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation ................... Passed 0.06 sec | |
| Start 233: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation | |
| 27/385 Test #229: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ...................... Passed 0.06 sec | |
| Start 235: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation | |
| 28/385 Test #231: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation ................... Passed 0.06 sec | |
| Start 237: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation | |
| 29/385 Test #233: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation ................. Passed 0.06 sec | |
| Start 239: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation | |
| 30/385 Test #235: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation .............. Passed 0.06 sec | |
| Start 241: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation | |
| 31/385 Test #237: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation .................. Passed 0.06 sec | |
| Start 243: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation | |
| 32/385 Test #239: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation ............... Passed 0.06 sec | |
| Start 245: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation | |
| 33/385 Test #241: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation ................... Passed 0.06 sec | |
| Start 247: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation | |
| 34/385 Test #243: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ................ Passed 0.06 sec | |
| Start 256: external_ringtest::neuron | |
| 35/385 Test #245: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation .................. Passed 0.06 sec | |
| Start 275: testcorenrn_bbcore::neuron | |
| 36/385 Test #247: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation ............... Passed 0.06 sec | |
| Start 276: testcorenrn_bbcore::coreneuron_gpu_online | |
| 37/385 Test #299: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............................. Passed 5.14 sec | |
| Start 277: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 38/385 Test #323: testcorenrn_kin::coreneuron_cpu_offline::preparation ............................... Passed 5.72 sec | |
| Start 278: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 39/385 Test #313: testcorenrn_gf::coreneuron_cpu_offline::preparation ................................ Passed 6.18 sec | |
| Start 331: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 40/385 Test #303: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............................. Passed 6.31 sec | |
| Start 280: testcorenrn_bbcore::coreneuron_cpu_online | |
| 41/385 Test #309: testcorenrn_gf::coreneuron_gpu_offline::preparation ................................ Passed 6.76 sec | |
| Start 337: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 42/385 Test #319: testcorenrn_kin::coreneuron_gpu_offline::preparation ............................... Passed 6.96 sec | |
| Start 281: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 43/385 Test #328: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........................... Passed 5.75 sec | |
| Start 282: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 44/385 Test #263: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......................... Passed 10.46 sec | |
| Start 341: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 45/385 Test #268: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......................... Passed 11.01 sec | |
| Start 357: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 46/385 Test #275: testcorenrn_bbcore::neuron ......................................................... Passed 6.11 sec | |
| Start 285: testcorenrn_conc::neuron | |
| 47/385 Test #331: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........................... Passed 4.93 sec | |
| Start 361: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 48/385 Test #337: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........................... Passed 5.07 sec | |
| Start 257: external_ringtest::neuron_mpi | |
| 49/385 Test #280: testcorenrn_bbcore::coreneuron_cpu_online .......................................... Passed 5.66 sec | |
| Start 286: testcorenrn_conc::coreneuron_gpu_online | |
| 50/385 Test #282: testcorenrn_bbcore::coreneuron_cpu_offline ......................................... Passed 2.17 sec | |
| Start 287: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 51/385 Test #281: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......................... Passed 5.56 sec | |
| Start 288: testcorenrn_conc::coreneuron_gpu_offline | |
| 52/385 Test #341: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........................... Passed 2.64 sec | |
| Start 258: external_ringtest::neuron_mpi_python | |
| 53/385 Test #285: testcorenrn_conc::neuron ........................................................... Passed 3.38 sec | |
| Start 290: testcorenrn_conc::coreneuron_cpu_online | |
| 54/385 Test #357: testcorenrn_watch::coreneuron_gpu_offline::preparation ............................. Passed 3.61 sec | |
| Start 260: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 55/385 Test #361: testcorenrn_watch::coreneuron_cpu_offline::preparation ............................. Passed 3.78 sec | |
| Start 261: external_ringtest::coreneuron_cpu_mpi | |
| 56/385 Test #277: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......................... Passed 11.62 sec | |
| Start 291: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 57/385 Test #278: testcorenrn_bbcore::coreneuron_gpu_offline ......................................... Passed 11.15 sec | |
| Start 292: testcorenrn_conc::coreneuron_cpu_offline | |
| 58/385 Test #276: testcorenrn_bbcore::coreneuron_gpu_online .......................................... Passed 12.14 sec | |
| Start 295: testcorenrn_deriv::neuron | |
| 59/385 Test #290: testcorenrn_conc::coreneuron_cpu_online ............................................ Passed 4.90 sec | |
| Start 296: testcorenrn_deriv::coreneuron_gpu_online | |
| 60/385 Test #292: testcorenrn_conc::coreneuron_cpu_offline ........................................... Passed 2.81 sec | |
| Start 297: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 61/385 Test #295: testcorenrn_deriv::neuron .......................................................... Passed 3.31 sec | |
| Start 298: testcorenrn_deriv::coreneuron_gpu_offline | |
| 62/385 Test #288: testcorenrn_conc::coreneuron_gpu_offline ........................................... Passed 8.61 sec | |
| Start 300: testcorenrn_deriv::coreneuron_cpu_online | |
| 63/385 Test #291: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........................... Passed 4.58 sec | |
| Start 301: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 64/385 Test #261: external_ringtest::coreneuron_cpu_mpi .............................................. Passed 6.55 sec | |
| Start 262: external_ringtest::coreneuron_cpu_mpi_offline | |
| 65/385 Test #286: testcorenrn_conc::coreneuron_gpu_online ............................................ Passed 10.66 sec | |
| Start 302: testcorenrn_deriv::coreneuron_cpu_offline | |
| 66/385 Test #256: external_ringtest::neuron .......................................................... Passed 18.44 sec | |
| Start 315: testcorenrn_kin::neuron | |
| 67/385 Test #287: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........................... Passed 11.98 sec | |
| Start 316: testcorenrn_kin::coreneuron_gpu_online | |
| 68/385 Test #257: external_ringtest::neuron_mpi ...................................................... Passed 14.15 sec | |
| Start 265: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 69/385 Test #315: testcorenrn_kin::neuron ............................................................ Passed 3.25 sec | |
| Start 317: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 70/385 Test #302: testcorenrn_deriv::coreneuron_cpu_offline .......................................... Passed 3.96 sec | |
| Start 318: testcorenrn_kin::coreneuron_gpu_offline | |
| 71/385 Test #300: testcorenrn_deriv::coreneuron_cpu_online ........................................... Passed 5.53 sec | |
| Start 320: testcorenrn_kin::coreneuron_cpu_online | |
| 72/385 Test #301: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......................... Passed 5.56 sec | |
| Start 321: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 73/385 Test #258: external_ringtest::neuron_mpi_python ............................................... Passed 14.14 sec | |
| Start 266: external_ringtest::coreneuron_gpu_mpi | |
| 74/385 Test #262: external_ringtest::coreneuron_cpu_mpi_offline ...................................... Passed 6.37 sec | |
| Start 267: external_ringtest::coreneuron_gpu_mpi_offline | |
| 75/385 Test #320: testcorenrn_kin::coreneuron_cpu_online ............................................. Passed 4.90 sec | |
| Start 322: testcorenrn_kin::coreneuron_cpu_offline | |
| 76/385 Test #321: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............................ Passed 4.94 sec | |
| Start 326: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 77/385 Test #260: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......................... Passed 18.72 sec | |
| Start 270: external_ringtest::coreneuron_mpi_registermapping_directmode | |
| 78/385 Test #322: testcorenrn_kin::coreneuron_cpu_offline ............................................ Passed 1.76 sec | |
| Start 327: testcorenrn_patstim::coreneuron_gpu_offline | |
| 79/385 Test #298: testcorenrn_deriv::coreneuron_gpu_offline .......................................... Passed 17.21 sec | |
| Start 367: channel_benchmark_hippo::neuron | |
| 80/385 Test #296: testcorenrn_deriv::coreneuron_gpu_online ........................................... Passed 19.36 sec | |
| Start 368: channel_benchmark_hippo::coreneuron_gpu_online | |
| 81/385 Test #270: external_ringtest::coreneuron_mpi_registermapping_directmode ....................... Passed 5.57 sec | |
| Start 271: external_ringtest::coreneuron_mpi_registermapping_filemode | |
| 82/385 Test #265: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......................... Passed 13.68 sec | |
| Start 305: testcorenrn_gf::neuron | |
| 83/385 Test #297: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......................... Passed 21.77 sec | |
| Start 369: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 84/385 Test #316: testcorenrn_kin::coreneuron_gpu_online ............................................. Passed 18.05 sec | |
| Start 370: channel_benchmark_hippo::coreneuron_cpu_online | |
| 85/385 Test #318: testcorenrn_kin::coreneuron_gpu_offline ............................................ Passed 17.68 sec | |
| Start 371: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 86/385 Test #271: external_ringtest::coreneuron_mpi_registermapping_filemode ......................... Passed 6.20 sec | |
| Start 306: testcorenrn_gf::coreneuron_gpu_online | |
| 87/385 Test #305: testcorenrn_gf::neuron ............................................................. Passed 5.66 sec | |
| Start 307: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 88/385 Test #317: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............................ Passed 20.38 sec | |
| Start 373: channel_benchmark_sscx::neuron | |
| 89/385 Test #267: external_ringtest::coreneuron_gpu_mpi_offline ...................................... Passed 21.04 sec | |
| Start 308: testcorenrn_gf::coreneuron_gpu_offline | |
| 90/385 Test #266: external_ringtest::coreneuron_gpu_mpi .............................................. Passed 22.36 sec | |
| Start 310: testcorenrn_gf::coreneuron_cpu_online | |
| 91/385 Test #327: testcorenrn_patstim::coreneuron_gpu_offline ........................................ Passed 16.62 sec | |
| Start 374: channel_benchmark_sscx::coreneuron_gpu_online | |
| 92/385 Test #326: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............................ Passed 20.57 sec | |
| Start 375: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 93/385 Test #310: testcorenrn_gf::coreneuron_cpu_online .............................................. Passed 4.12 sec | |
| Start 311: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 94/385 Test #311: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............................. Passed 5.35 sec | |
| Start 312: testcorenrn_gf::coreneuron_cpu_offline | |
| 95/385 Test #306: testcorenrn_gf::coreneuron_gpu_online .............................................. Passed 14.45 sec | |
| Start 325: testcorenrn_patstim::neuron | |
| 96/385 Test #308: testcorenrn_gf::coreneuron_gpu_offline ............................................. Passed 10.81 sec | |
| Start 329: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 97/385 Test #307: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............................. Passed 14.89 sec | |
| Start 330: testcorenrn_patstim::coreneuron_cpu_offline | |
| 98/385 Test #312: testcorenrn_gf::coreneuron_cpu_offline ............................................. Passed 2.46 sec | |
| Start 333: testcorenrn_vecplay::neuron | |
| 99/385 Test #325: testcorenrn_patstim::neuron ........................................................ Passed 2.95 sec | |
| Start 334: testcorenrn_vecplay::coreneuron_gpu_online | |
| 100/385 Test #330: testcorenrn_patstim::coreneuron_cpu_offline ........................................ Passed 2.68 sec | |
| Start 335: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 101/385 Test #333: testcorenrn_vecplay::neuron ........................................................ Passed 4.09 sec | |
| Start 336: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 102/385 Test #329: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............................ Passed 11.64 sec | |
| Start 338: testcorenrn_vecplay::coreneuron_cpu_online | |
| 103/385 Test #338: testcorenrn_vecplay::coreneuron_cpu_online ......................................... Passed 2.24 sec | |
| Start 339: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 104/385 Test #339: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........................ Passed 2.90 sec | |
| Start 340: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 105/385 Test #340: testcorenrn_vecplay::coreneuron_cpu_offline ........................................ Passed 1.80 sec | |
| Start 353: testcorenrn_watch::neuron | |
| 106/385 Test #353: testcorenrn_watch::neuron .......................................................... Passed 1.92 sec | |
| Start 354: testcorenrn_watch::coreneuron_gpu_online | |
| 107/385 Test #336: testcorenrn_vecplay::coreneuron_gpu_offline ........................................ Passed 35.53 sec | |
| Start 355: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 108/385 Test #334: testcorenrn_vecplay::coreneuron_gpu_online ......................................... Passed 38.81 sec | |
| Start 356: testcorenrn_watch::coreneuron_gpu_offline | |
| 109/385 Test #354: testcorenrn_watch::coreneuron_gpu_online ........................................... Passed 21.52 sec | |
| Start 358: testcorenrn_watch::coreneuron_cpu_online | |
| 110/385 Test #335: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........................ Passed 42.12 sec | |
| Start 359: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 111/385 Test #358: testcorenrn_watch::coreneuron_cpu_online ........................................... Passed 4.64 sec | |
| Start 360: testcorenrn_watch::coreneuron_cpu_offline | |
| 112/385 Test #359: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......................... Passed 2.61 sec | |
| Start 363: testcorenrn_netstimdirect::direct_netstimdirect | |
| 113/385 Test #360: testcorenrn_watch::coreneuron_cpu_offline .......................................... Passed 1.87 sec | |
| Start 364: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 114/385 Test #363: testcorenrn_netstimdirect::direct_netstimdirect .................................... Passed 3.09 sec | |
| Start 376: channel_benchmark_sscx::coreneuron_cpu_online | |
| Start 377: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 115/385 Test #364: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ................... Passed 2.83 sec | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| 116/385 Test #1: cmd_interface_test ................................................................. Passed 0.04 sec | |
| Start 3: alignment_test | |
| 117/385 Test #2: interleave_info_constructor_test ................................................... Passed 0.04 sec | |
| Start 4: queuing_test | |
| 118/385 Test #3: alignment_test ..................................................................... Passed 0.04 sec | |
| Start 5: test-solver | |
| 119/385 Test #4: queuing_test ....................................................................... Passed 0.04 sec | |
| Start 6: random_test | |
| 120/385 Test #6: random_test ........................................................................ Passed 0.04 sec | |
| Start 7: lfp_test | |
| 121/385 Test #7: lfp_test ........................................................................... Passed 0.05 sec | |
| Start 8: unit_tests::testneuron | |
| 122/385 Test #8: unit_tests::testneuron ............................................................. Passed 0.09 sec | |
| Start 9: unit_tests::testneuron_soa_erase_calls_terminate | |
| 123/385 Test #9: unit_tests::testneuron_soa_erase_calls_terminate ................................... Passed 0.09 sec | |
| Start 10: ringtest | |
| 124/385 Test #356: testcorenrn_watch::coreneuron_gpu_offline .......................................... Passed 10.57 sec | |
| Start 11: connect_dend | |
| Start 12: mpi_init::nrniv_mpiopt | |
| 125/385 Test #12: mpi_init::nrniv_mpiopt ............................................................. Passed 0.09 sec | |
| Start 13: mpi_init::nrniv_nrnmpi_init | |
| 126/385 Test #13: mpi_init::nrniv_nrnmpi_init ........................................................ Passed 0.09 sec | |
| Start 14: mpi_init::python_nrnmpi_init | |
| 127/385 Test #11: connect_dend ....................................................................... Passed 0.21 sec | |
| Start 15: mpi_init::python_mpienv | |
| 128/385 Test #10: ringtest ........................................................................... Passed 0.65 sec | |
| Start 16: mpi_init::nrniv_mpiexec_mpiopt | |
| 129/385 Test #14: mpi_init::python_nrnmpi_init ....................................................... Passed 0.33 sec | |
| Start 17: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 130/385 Test #15: mpi_init::python_mpienv ............................................................ Passed 0.33 sec | |
| Start 18: mpi_init::python_mpiexec_nrnmpi_init | |
| 131/385 Test #355: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......................... Passed 14.30 sec | |
| Start 19: mpi_init::python_mpiexec_mpienv | |
| Start 20: unit_tests::python_unit_tests | |
| 132/385 Test #16: mpi_init::nrniv_mpiexec_mpiopt ..................................................... Passed 3.39 sec | |
| Start 21: pytest::basic_tests_py3.11 | |
| 133/385 Test #18: mpi_init::python_mpiexec_nrnmpi_init ............................................... Passed 3.58 sec | |
| Start 22: pytest_coreneuron::basic_tests_py3.11 | |
| 134/385 Test #17: mpi_init::nrniv_mpiexec_nrnmpi_init ................................................ Passed 3.68 sec | |
| Start 23: datahandle::datahandle_tests | |
| 135/385 Test #5: test-solver ........................................................................ Passed 5.34 sec | |
| Start 24: coverage_tests::cover_tests | |
| 136/385 Test #20: unit_tests::python_unit_tests ...................................................... Passed 3.25 sec | |
| Start 25: example_nmodl::ca_ap_hoc | |
| 137/385 Test #21: pytest::basic_tests_py3.11 ......................................................... Passed 3.43 sec | |
| Start 26: example_nmodl::cabpump_hoc | |
| 138/385 Test #19: mpi_init::python_mpiexec_mpienv .................................................... Passed 3.84 sec | |
| Start 27: example_nmodl::cachan_hoc | |
| 139/385 Test #25: example_nmodl::ca_ap_hoc ........................................................... Passed 0.83 sec | |
| Start 28: example_nmodl::cadif_hoc | |
| 140/385 Test #27: example_nmodl::cachan_hoc .......................................................... Passed 0.81 sec | |
| Start 29: example_nmodl::cadifusl_hoc | |
| 141/385 Test #26: example_nmodl::cabpump_hoc ......................................................... Passed 1.26 sec | |
| Start 30: example_nmodl::cadifusl1_hoc | |
| 142/385 Test #23: datahandle::datahandle_tests ....................................................... Passed 4.49 sec | |
| Start 31: example_nmodl::cadifusl2_hoc | |
| 143/385 Test #28: example_nmodl::cadif_hoc ........................................................... Passed 1.19 sec | |
| Start 32: example_nmodl::cagk_hoc | |
| 144/385 Test #29: example_nmodl::cadifusl_hoc ........................................................ Passed 0.88 sec | |
| Start 33: example_nmodl::capmp_hoc | |
| 145/385 Test #32: example_nmodl::cagk_hoc ............................................................ Passed 0.64 sec | |
| Start 34: example_nmodl::cv_hoc | |
| 146/385 Test #30: example_nmodl::cadifusl1_hoc ....................................................... Passed 1.10 sec | |
| Start 35: example_nmodl::fh_hoc | |
| 147/385 Test #31: example_nmodl::cadifusl2_hoc ....................................................... Passed 0.82 sec | |
| Start 36: example_nmodl::fit1_hoc | |
| 148/385 Test #33: example_nmodl::capmp_hoc ........................................................... Passed 0.97 sec | |
| Start 37: example_nmodl::gap_hoc | |
| 149/385 Test #34: example_nmodl::cv_hoc .............................................................. Passed 0.69 sec | |
| Start 38: example_nmodl::hh1_hoc | |
| 150/385 Test #35: example_nmodl::fh_hoc .............................................................. Passed 0.71 sec | |
| Start 39: example_nmodl::hhvect_hoc | |
| 151/385 Test #36: example_nmodl::fit1_hoc ............................................................ Passed 0.70 sec | |
| Start 40: example_nmodl::nacum_hoc | |
| 152/385 Test #37: example_nmodl::gap_hoc ............................................................. Passed 0.76 sec | |
| Start 41: example_nmodl::nadifl1_hoc | |
| 153/385 Test #38: example_nmodl::hh1_hoc ............................................................. Passed 0.73 sec | |
| Start 42: example_nmodl::nadifl2_hoc | |
| 154/385 Test #39: example_nmodl::hhvect_hoc .......................................................... Passed 0.72 sec | |
| Start 43: example_nmodl::nadifl3_hoc | |
| 155/385 Test #40: example_nmodl::nacum_hoc ........................................................... Passed 0.68 sec | |
| Start 44: example_nmodl::nadifl4_hoc | |
| 156/385 Test #41: example_nmodl::nadifl1_hoc ......................................................... Passed 0.76 sec | |
| Start 45: example_nmodl::obj_ex_hoc | |
| 157/385 Test #43: example_nmodl::nadifl3_hoc ......................................................... Passed 1.07 sec | |
| Start 46: example_nmodl::order_hoc | |
| 158/385 Test #42: example_nmodl::nadifl2_hoc ......................................................... Passed 1.09 sec | |
| Start 47: example_nmodl::passiv_hoc | |
| 159/385 Test #24: coverage_tests::cover_tests ........................................................ Passed 7.36 sec | |
| Start 48: example_nmodl::stim1_hoc | |
| 160/385 Test #44: example_nmodl::nadifl4_hoc ......................................................... Passed 1.13 sec | |
| Start 49: example_nmodl::syn1_hoc | |
| 161/385 Test #45: example_nmodl::obj_ex_hoc .......................................................... Passed 0.74 sec | |
| Start 50: example_nmodl::synpre_hoc | |
| 162/385 Test #47: example_nmodl::passiv_hoc .......................................................... Passed 0.78 sec | |
| Start 51: example_nmodl::tstextrn_hoc | |
| 163/385 Test #48: example_nmodl::stim1_hoc ........................................................... Passed 0.78 sec | |
| Start 52: example_nmodl::tstpnt1_hoc | |
| 164/385 Test #49: example_nmodl::syn1_hoc ............................................................ Passed 0.79 sec | |
| Start 53: example_nmodl::tstpnt2_hoc | |
| 165/385 Test #46: example_nmodl::order_hoc ........................................................... Passed 1.19 sec | |
| Start 54: example_nmodl::tstvec_hoc | |
| 166/385 Test #50: example_nmodl::synpre_hoc .......................................................... Passed 0.87 sec | |
| Start 55: example_nmodl::cagkftab_py | |
| 167/385 Test #51: example_nmodl::tstextrn_hoc ........................................................ Passed 0.81 sec | |
| Start 56: example_nmodl::expsynspine_py | |
| 168/385 Test #52: example_nmodl::tstpnt1_hoc ......................................................... Passed 0.79 sec | |
| Start 57: example_nmodl::nonlin_py | |
| 169/385 Test #53: example_nmodl::tstpnt2_hoc ......................................................... Passed 0.78 sec | |
| Start 58: example_nmodl::tstpnt1_py | |
| 170/385 Test #54: example_nmodl::tstvec_hoc .......................................................... Passed 0.78 sec | |
| Start 59: example_nmodl::tstpnt2_py | |
| 171/385 Test #58: example_nmodl::tstpnt1_py .......................................................... Passed 1.71 sec | |
| Start 60: example_nmodl::vlag_py | |
| 172/385 Test #56: example_nmodl::expsynspine_py ...................................................... Passed 1.93 sec | |
| Start 61: hoctests::test_loadbal_hoc | |
| 173/385 Test #59: example_nmodl::tstpnt2_py .......................................................... Passed 1.73 sec | |
| Start 62: hoctests::test_random_hoc | |
| 174/385 Test #61: hoctests::test_loadbal_hoc ......................................................... Passed 0.61 sec | |
| Start 63: hoctests::perf1_hoc | |
| 175/385 Test #62: hoctests::test_random_hoc .......................................................... Passed 0.62 sec | |
| Start 64: hoctests::test1_hoc | |
| 176/385 Test #60: example_nmodl::vlag_py ............................................................. Passed 1.56 sec | |
| Start 65: hoctests::test2_hoc | |
| 177/385 Test #64: hoctests::test1_hoc ................................................................ Passed 0.97 sec | |
| Start 66: hoctests::test3_hoc | |
| 178/385 Test #22: pytest_coreneuron::basic_tests_py3.11 .............................................. Passed 13.26 sec | |
| Start 67: hoctests::test4_hoc | |
| 179/385 Test #65: hoctests::test2_hoc ................................................................ Passed 0.62 sec | |
| Start 68: hoctests::test5_hoc | |
| 180/385 Test #66: hoctests::test3_hoc ................................................................ Passed 0.52 sec | |
| Start 69: hoctests::test6_hoc | |
| 181/385 Test #67: hoctests::test4_hoc ................................................................ Passed 0.45 sec | |
| Start 70: hoctests::test7_hoc | |
| 182/385 Test #68: hoctests::test5_hoc ................................................................ Passed 0.41 sec | |
| Start 71: hoctests::test8_hoc | |
| 183/385 Test #69: hoctests::test6_hoc ................................................................ Passed 0.51 sec | |
| Start 72: hoctests::test9_hoc | |
| 184/385 Test #70: hoctests::test7_hoc ................................................................ Passed 0.54 sec | |
| Start 73: hoctests::test_bbss_py | |
| 185/385 Test #71: hoctests::test8_hoc ................................................................ Passed 0.53 sec | |
| Start 74: hoctests::test_cvinterp_py | |
| 186/385 Test #57: example_nmodl::nonlin_py ........................................................... Passed 5.01 sec | |
| Start 75: hoctests::test_hocGUI2_py | |
| 187/385 Test #72: hoctests::test9_hoc ................................................................ Passed 0.55 sec | |
| Start 76: hoctests::test_hoc_class_instance_py | |
| 188/385 Test #63: hoctests::perf1_hoc ................................................................ Passed 3.24 sec | |
| Start 77: hoctests::test_hocmech_py | |
| 189/385 Test #73: hoctests::test_bbss_py ............................................................. Passed 1.46 sec | |
| Start 78: hoctests::test_kschan_py | |
| 190/385 Test #55: example_nmodl::cagkftab_py ......................................................... Passed 6.79 sec | |
| Start 79: hoctests::test_legacy_setpointer_py | |
| 191/385 Test #74: hoctests::test_cvinterp_py ......................................................... Passed 1.54 sec | |
| Start 80: hoctests::test_mechfunc_py | |
| 192/385 Test #76: hoctests::test_hoc_class_instance_py ...............................................***Failed 1.45 sec | |
| h.Vector[0] | |
| Traceback (most recent call last): | |
| File "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265066/spack-build/spack-stage-neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b_develop-pqdm6n2kufagtcocoit5kpgfpg255jdz/spack-build-pqdm6n2/test/hoctests/test_hoc_class_instance_py/tests/test_hoc_class_instance.py", line 28, in <module> | |
| test1() | |
| File "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208761/J1265066/spack-build/spack-stage-neuron-git.c37983f65b4f7b386e049c653f50bed70fe3196b_develop-pqdm6n2kufagtcocoit5kpgfpg255jdz/spack-build-pqdm6n2/test/hoctests/test_hoc_class_instance_py/tests/test_hoc_class_instance.py", line 18, in test1 | |
| exec(vstr + ".resize(10)") | |
| File "<string>", line 1, in <module> | |
| TypeError: type 'hoc.Vector' is not subscriptable | |
| Start 81: hoctests::test_mechstd_py | |
| 193/385 Test #75: hoctests::test_hocGUI2_py .......................................................... Passed 1.78 sec | |
| Start 82: hoctests::test_mode_py | |
| 194/385 Test #77: hoctests::test_hocmech_py .......................................................... Passed 1.87 sec | |
| Start 83: hoctests::test_neurondemo_py | |
| 195/385 Test #79: hoctests::test_legacy_setpointer_py ................................................ Passed 1.67 sec | |
| Start 84: hoctests::test_nrniv-launch_py | |
| 196/385 Test #80: hoctests::test_mechfunc_py ......................................................... Passed 1.72 sec | |
| Start 85: hoctests::test_optim_node_order_py | |
| 197/385 Test #82: hoctests::test_mode_py ............................................................. Passed 1.60 sec | |
| Start 86: hoctests::test_random_py | |
| 198/385 Test #81: hoctests::test_mechstd_py .......................................................... Passed 1.80 sec | |
| Start 87: hoctests::test_setdata_py | |
| 199/385 Test #78: hoctests::test_kschan_py ........................................................... Passed 2.36 sec | |
| Start 88: hoctests::test_shape_py | |
| 200/385 Test #84: hoctests::test_nrniv-launch_py ..................................................... Passed 1.08 sec | |
| Start 89: hoctests::test_thread_partition_py | |
| 201/385 Test #83: hoctests::test_neurondemo_py ....................................................... Passed 1.52 sec | |
| Start 90: hoctests::test1_py | |
| 202/385 Test #85: hoctests::test_optim_node_order_py ................................................. Passed 1.86 sec | |
| Start 91: hoctests::test2_py | |
| 203/385 Test #87: hoctests::test_setdata_py .......................................................... Passed 1.62 sec | |
| Start 92: hoctests::test9_py | |
| 204/385 Test #86: hoctests::test_random_py ........................................................... Passed 1.79 sec | |
| Start 98: nmodl_tests::test_table | |
| 205/385 Test #88: hoctests::test_shape_py ............................................................ Passed 1.82 sec | |
| Start 99: nmodl_tests::test_disc | |
| 206/385 Test #90: hoctests::test1_py ................................................................. Passed 1.42 sec | |
| Start 100: nmodl_tests::test_function_table | |
| 207/385 Test #89: hoctests::test_thread_partition_py ................................................. Passed 1.68 sec | |
| Start 101: nmodl_tests::test_kinetic | |
| 208/385 Test #91: hoctests::test2_py ................................................................. Passed 1.08 sec | |
| Start 102: nmodl_tests::test_random | |
| 209/385 Test #92: hoctests::test9_py ................................................................. Passed 1.04 sec | |
| Start 103: nmodl_tests::test_path_spaces | |
| 210/385 Test #98: nmodl_tests::test_table ............................................................ Passed 1.57 sec | |
| Start 104: coreneuron_modtests::version_macros | |
| 211/385 Test #99: nmodl_tests::test_disc ............................................................. Passed 1.62 sec | |
| Start 106: coreneuron_modtests::fornetcon_py_cpu | |
| 212/385 Test #100: nmodl_tests::test_function_table ................................................... Passed 1.66 sec | |
| Start 107: coreneuron_modtests::direct_py_cpu | |
| 213/385 Test #101: nmodl_tests::test_kinetic .......................................................... Passed 1.77 sec | |
| Start 108: coreneuron_modtests::direct_hoc_cpu | |
| 214/385 Test #102: nmodl_tests::test_random ........................................................... Passed 1.58 sec | |
| Start 109: coreneuron_modtests::spikes_py_cpu | |
| 215/385 Test #108: coreneuron_modtests::direct_hoc_cpu ................................................ Passed 4.57 sec | |
| Start 110: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 216/385 Test #104: coreneuron_modtests::version_macros ................................................ Passed 5.40 sec | |
| Start 111: coreneuron_modtests::fast_imem_py_cpu | |
| 217/385 Test #106: coreneuron_modtests::fornetcon_py_cpu .............................................. Passed 5.18 sec | |
| Start 112: coreneuron_modtests::datareturn_py_cpu | |
| 218/385 Test #109: coreneuron_modtests::spikes_py_cpu ................................................. Passed 4.60 sec | |
| Start 113: coreneuron_modtests::test_units_py_cpu | |
| 219/385 Test #107: coreneuron_modtests::direct_py_cpu ................................................. Passed 5.81 sec | |
| Start 114: coreneuron_modtests::test_netmove_py_cpu | |
| 220/385 Test #103: nmodl_tests::test_path_spaces ...................................................... Passed 9.02 sec | |
| Start 115: coreneuron_modtests::test_pointer_py_cpu | |
| 221/385 Test #113: coreneuron_modtests::test_units_py_cpu ............................................. Passed 3.47 sec | |
| Start 116: coreneuron_modtests::test_watchrange_py_cpu | |
| 222/385 Test #110: coreneuron_modtests::spikes_file_mode_py_cpu ....................................... Passed 3.64 sec | |
| Start 117: coreneuron_modtests::test_psolve_py_cpu | |
| 223/385 Test #111: coreneuron_modtests::fast_imem_py_cpu .............................................. Passed 3.66 sec | |
| Start 118: coreneuron_modtests::test_ba_py_cpu | |
| 224/385 Test #114: coreneuron_modtests::test_netmove_py_cpu ........................................... Passed 3.09 sec | |
| Start 119: coreneuron_modtests::test_nmodlrandom_py_cpu | |
| 225/385 Test #112: coreneuron_modtests::datareturn_py_cpu ............................................. Passed 4.00 sec | |
| Start 120: coreneuron_modtests::test_nmodlrandom_syntax_py_cpu | |
| 226/385 Test #118: coreneuron_modtests::test_ba_py_cpu ................................................ Passed 0.82 sec | |
| Start 121: coreneuron_modtests::test_natrans_py_cpu | |
| 227/385 Test #116: coreneuron_modtests::test_watchrange_py_cpu ........................................ Passed 1.10 sec | |
| Start 122: coreneuron_modtests::array_variable_transfer_run_mode_0_py_cpu | |
| 228/385 Test #117: coreneuron_modtests::test_psolve_py_cpu ............................................ Passed 1.27 sec | |
| Start 123: coreneuron_modtests::array_variable_transfer_run_mode_1_py_cpu | |
| 229/385 Test #121: coreneuron_modtests::test_natrans_py_cpu ........................................... Passed 1.22 sec | |
| Start 124: coreneuron_modtests::array_variable_transfer_run_mode_2_py_cpu | |
| 230/385 Test #120: coreneuron_modtests::test_nmodlrandom_syntax_py_cpu ................................ Passed 1.73 sec | |
| Start 125: coreneuron_modtests::array_variable_transfer_file_mode_py_cpu | |
| 231/385 Test #122: coreneuron_modtests::array_variable_transfer_run_mode_0_py_cpu ..................... Passed 1.34 sec | |
| Start 128: nmodl_tests_coreneuron::test_table_coreneuron_cpu | |
| 232/385 Test #119: coreneuron_modtests::test_nmodlrandom_py_cpu ....................................... Passed 2.15 sec | |
| Start 129: nmodl_tests_coreneuron::test_disc_coreneuron_cpu | |
| 233/385 Test #123: coreneuron_modtests::array_variable_transfer_run_mode_1_py_cpu ..................... Passed 1.44 sec | |
| Start 130: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu | |
| 234/385 Test #128: nmodl_tests_coreneuron::test_table_coreneuron_cpu .................................. Passed 0.57 sec | |
| Start 131: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu | |
| 235/385 Test #124: coreneuron_modtests::array_variable_transfer_run_mode_2_py_cpu ..................... Passed 0.99 sec | |
| Start 132: coreneuron_modtests::fornetcon_py_gpu | |
| 236/385 Test #129: nmodl_tests_coreneuron::test_disc_coreneuron_cpu ................................... Passed 0.61 sec | |
| Start 133: coreneuron_modtests::direct_py_gpu | |
| 237/385 Test #115: coreneuron_modtests::test_pointer_py_cpu ........................................... Passed 3.72 sec | |
| Start 134: coreneuron_modtests::direct_hoc_gpu | |
| 238/385 Test #125: coreneuron_modtests::array_variable_transfer_file_mode_py_cpu ...................... Passed 0.98 sec | |
| Start 135: coreneuron_modtests::spikes_py_gpu | |
| 239/385 Test #130: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ......................... Passed 0.72 sec | |
| Start 136: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 240/385 Test #131: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ................................ Passed 0.75 sec | |
| Start 137: coreneuron_modtests::fast_imem_py_gpu | |
| 241/385 Test #134: coreneuron_modtests::direct_hoc_gpu ................................................ Passed 5.07 sec | |
| Start 138: coreneuron_modtests::datareturn_py_gpu | |
| 242/385 Test #137: coreneuron_modtests::fast_imem_py_gpu .............................................. Passed 5.94 sec | |
| Start 139: coreneuron_modtests::test_units_py_gpu | |
| 243/385 Test #136: coreneuron_modtests::spikes_file_mode_py_gpu ....................................... Passed 6.38 sec | |
| Start 140: coreneuron_modtests::test_netmove_py_gpu | |
| 244/385 Test #139: coreneuron_modtests::test_units_py_gpu ............................................. Passed 0.68 sec | |
| Start 141: coreneuron_modtests::test_pointer_py_gpu | |
| 245/385 Test #133: coreneuron_modtests::direct_py_gpu ................................................. Passed 7.43 sec | |
| Start 142: coreneuron_modtests::test_watchrange_py_gpu | |
| 246/385 Test #132: coreneuron_modtests::fornetcon_py_gpu .............................................. Passed 7.82 sec | |
| Start 143: coreneuron_modtests::test_psolve_py_gpu | |
| 247/385 Test #135: coreneuron_modtests::spikes_py_gpu ................................................. Passed 8.03 sec | |
| Start 144: coreneuron_modtests::test_ba_py_gpu | |
| 248/385 Test #144: coreneuron_modtests::test_ba_py_gpu ................................................ Passed 1.04 sec | |
| Start 145: coreneuron_modtests::test_nmodlrandom_py_gpu | |
| 249/385 Test #143: coreneuron_modtests::test_psolve_py_gpu ............................................ Passed 2.24 sec | |
| Start 146: coreneuron_modtests::test_nmodlrandom_syntax_py_gpu | |
| 250/385 Test #142: coreneuron_modtests::test_watchrange_py_gpu ........................................ Passed 3.14 sec | |
| Start 147: coreneuron_modtests::test_natrans_py_gpu | |
| 251/385 Test #147: coreneuron_modtests::test_natrans_py_gpu ........................................... Passed 1.31 sec | |
| Start 148: coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu | |
| 252/385 Test #146: coreneuron_modtests::test_nmodlrandom_syntax_py_gpu ................................ Passed 1.92 sec | |
| Start 149: coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu | |
| 253/385 Test #145: coreneuron_modtests::test_nmodlrandom_py_gpu ....................................... Passed 3.40 sec | |
| Start 150: coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu | |
| 254/385 Test #148: coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu ..................... Passed 1.13 sec | |
| Start 151: coreneuron_modtests::array_variable_transfer_file_mode_py_gpu | |
| 255/385 Test #149: coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu ..................... Passed 1.13 sec | |
| Start 154: nmodl_tests_coreneuron::test_table_coreneuron_gpu | |
| 256/385 Test #154: nmodl_tests_coreneuron::test_table_coreneuron_gpu .................................. Passed 0.44 sec | |
| Start 155: nmodl_tests_coreneuron::test_disc_coreneuron_gpu | |
| 257/385 Test #150: coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu ..................... Passed 1.08 sec | |
| Start 156: nmodl_tests_coreneuron::test_function_table_coreneuron_gpu | |
| 258/385 Test #138: coreneuron_modtests::datareturn_py_gpu ............................................. Passed 8.71 sec | |
| Start 157: nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu | |
| 259/385 Test #155: nmodl_tests_coreneuron::test_disc_coreneuron_gpu ................................... Passed 0.45 sec | |
| Start 158: modlunit_unitstest | |
| 260/385 Test #141: coreneuron_modtests::test_pointer_py_gpu ........................................... Passed 6.81 sec | |
| Start 159: modlunit_hh | |
| 261/385 Test #158: modlunit_unitstest ................................................................. Passed 0.03 sec | |
| Start 160: modlunit_stim | |
| 262/385 Test #159: modlunit_hh ........................................................................ Passed 0.02 sec | |
| Start 161: modlunit_pattern | |
| 263/385 Test #151: coreneuron_modtests::array_variable_transfer_file_mode_py_gpu ...................... Passed 1.04 sec | |
| Start 162: modlunit_rand | |
| 264/385 Test #160: modlunit_stim ...................................................................... Passed 0.02 sec | |
| Start 163: pyinit::nrniv_script.py | |
| 265/385 Test #161: modlunit_pattern ................................................................... Passed 0.06 sec | |
| Start 164: pyinit::nrniv_script.py_error | |
| 266/385 Test #162: modlunit_rand ...................................................................... Passed 0.07 sec | |
| Start 165: pyinit::nrniv_two_scripts.py | |
| 267/385 Test #156: nmodl_tests_coreneuron::test_function_table_coreneuron_gpu ......................... Passed 0.53 sec | |
| Start 166: pyinit::nrniv_two_scripts.py_error_check_code | |
| 268/385 Test #163: pyinit::nrniv_script.py ............................................................ Passed 0.19 sec | |
| Start 167: pyinit::nrniv_two_scripts.py_error_check_output | |
| 269/385 Test #164: pyinit::nrniv_script.py_error ...................................................... Passed 0.18 sec | |
| Start 168: pyinit::nrniv_python_command | |
| 270/385 Test #166: pyinit::nrniv_two_scripts.py_error_check_code ...................................... Passed 0.17 sec | |
| Start 169: pyinit::nrniv_python_command_error | |
| 271/385 Test #165: pyinit::nrniv_two_scripts.py ....................................................... Passed 0.20 sec | |
| Start 170: pyinit::nrniv_python_script.py | |
| 272/385 Test #167: pyinit::nrniv_two_scripts.py_error_check_output .................................... Passed 0.14 sec | |
| Start 171: pyinit::nrniv_python_script.py_error | |
| 273/385 Test #157: nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu ................................ Passed 0.64 sec | |
| Start 172: pyinit::nrniv_python_command_twice | |
| 274/385 Test #169: pyinit::nrniv_python_command_error ................................................. Passed 0.25 sec | |
| Start 173: pyinit::nrniv_python_script.py_twice | |
| 275/385 Test #170: pyinit::nrniv_python_script.py ..................................................... Passed 0.24 sec | |
| Start 174: pyinit::nrniv_python_command_args | |
| 276/385 Test #168: pyinit::nrniv_python_command ....................................................... Passed 0.27 sec | |
| Start 175: pyinit::nrniv_python_script.py_args | |
| 277/385 Test #172: pyinit::nrniv_python_command_twice ................................................. Passed 0.20 sec | |
| Start 176: pyinit::nrniv_nopython_PythonObject | |
| 278/385 Test #171: pyinit::nrniv_python_script.py_error ............................................... Passed 0.25 sec | |
| Start 177: pyinit::nrniv_nopython_PythonObject_pyexe | |
| 279/385 Test #173: pyinit::nrniv_python_script.py_twice ............................................... Passed 0.27 sec | |
| Start 178: pyinit::nrniv_nopython_PythonObject_pyenv | |
| 280/385 Test #174: pyinit::nrniv_python_command_args .................................................. Passed 0.26 sec | |
| Start 179: pyinit::nrniv_py3.11_python_command_version_check | |
| 281/385 Test #176: pyinit::nrniv_nopython_PythonObject ................................................ Passed 0.19 sec | |
| Start 180: pyinit::nrniv_py3.11_python_check_sys_path | |
| 282/385 Test #177: pyinit::nrniv_nopython_PythonObject_pyexe .......................................... Passed 0.19 sec | |
| Start 182: pyinit::nrniv_py3.11_nrnpython_check_sys_path | |
| 283/385 Test #175: pyinit::nrniv_python_script.py_args ................................................ Passed 0.27 sec | |
| Start 184: pyinit::nrniv_py3.11_python_check_sys_prefix | |
| 284/385 Test #178: pyinit::nrniv_nopython_PythonObject_pyenv .......................................... Passed 0.21 sec | |
| Start 186: pyinit::nrniv_py3.11_nrnpython_check_sys_prefix | |
| 285/385 Test #179: pyinit::nrniv_py3.11_python_command_version_check .................................. Passed 0.23 sec | |
| Start 188: pyinit::nrniv_py3.11_python_check_sys_exec_prefix | |
| 286/385 Test #140: coreneuron_modtests::test_netmove_py_gpu ........................................... Passed 8.34 sec | |
| Start 190: pyinit::nrniv_py3.11_nrnpython_check_sys_exec_prefix | |
| 287/385 Test #182: pyinit::nrniv_py3.11_nrnpython_check_sys_path ...................................... Passed 0.31 sec | |
| Start 192: pyinit::nrniv_py3.11_python_check_sys_base_prefix | |
| 288/385 Test #180: pyinit::nrniv_py3.11_python_check_sys_path ......................................... Passed 0.35 sec | |
| Start 194: pyinit::nrniv_py3.11_nrnpython_check_sys_base_prefix | |
| 289/385 Test #184: pyinit::nrniv_py3.11_python_check_sys_prefix ....................................... Passed 0.35 sec | |
| Start 196: pyinit::nrniv_py3.11_python_check_sys_base_exec_prefix | |
| 290/385 Test #186: pyinit::nrniv_py3.11_nrnpython_check_sys_prefix .................................... Passed 0.31 sec | |
| Start 198: pyinit::nrniv_py3.11_nrnpython_check_sys_base_exec_prefix | |
| 291/385 Test #188: pyinit::nrniv_py3.11_python_check_sys_exec_prefix .................................. Passed 0.32 sec | |
| Start 200: pyinit::nrniv_py3.11_python_check_sys_stderr.encoding | |
| 292/385 Test #190: pyinit::nrniv_py3.11_nrnpython_check_sys_exec_prefix ............................... Passed 0.36 sec | |
| Start 202: pyinit::nrniv_py3.11_nrnpython_check_sys_stderr.encoding | |
| 293/385 Test #192: pyinit::nrniv_py3.11_python_check_sys_base_prefix .................................. Passed 0.37 sec | |
| Start 204: pyinit::nrniv_py3.11_python_check_sys_stdin.encoding | |
| 294/385 Test #196: pyinit::nrniv_py3.11_python_check_sys_base_exec_prefix ............................. Passed 0.37 sec | |
| Start 206: pyinit::nrniv_py3.11_nrnpython_check_sys_stdin.encoding | |
| 295/385 Test #194: pyinit::nrniv_py3.11_nrnpython_check_sys_base_prefix ............................... Passed 0.38 sec | |
| Start 208: pyinit::nrniv_py3.11_python_check_sys_stdout.encoding | |
| 296/385 Test #198: pyinit::nrniv_py3.11_nrnpython_check_sys_base_exec_prefix .......................... Passed 0.31 sec | |
| Start 210: pyinit::nrniv_py3.11_nrnpython_check_sys_stdout.encoding | |
| 297/385 Test #200: pyinit::nrniv_py3.11_python_check_sys_stderr.encoding .............................. Passed 0.35 sec | |
| Start 212: pyinit::nrniv_py3.11_python_command_import_neuron | |
| 298/385 Test #202: pyinit::nrniv_py3.11_nrnpython_check_sys_stderr.encoding ........................... Passed 0.33 sec | |
| Start 213: pyinit::py3.11_command_import_neuron | |
| 299/385 Test #204: pyinit::nrniv_py3.11_python_check_sys_stdin.encoding ............................... Passed 0.32 sec | |
| Start 214: pyinit::nrniv_py3.11_hoc_command_nrnpython | |
| 300/385 Test #206: pyinit::nrniv_py3.11_nrnpython_check_sys_stdin.encoding ............................ Passed 0.33 sec | |
| Start 215: pyinit::nrniv_pydef_python_command_version_check | |
| 301/385 Test #208: pyinit::nrniv_py3.11_python_check_sys_stdout.encoding .............................. Passed 0.36 sec | |
| Start 216: pyinit::nrniv_pydef_python_check_sys_path | |
| 302/385 Test #210: pyinit::nrniv_py3.11_nrnpython_check_sys_stdout.encoding ........................... Passed 0.26 sec | |
| Start 218: pyinit::nrniv_pydef_nrnpython_check_sys_path | |
| 303/385 Test #214: pyinit::nrniv_py3.11_hoc_command_nrnpython ......................................... Passed 0.30 sec | |
| Start 220: pyinit::nrniv_pydef_python_check_sys_prefix | |
| 304/385 Test #215: pyinit::nrniv_pydef_python_command_version_check ................................... Passed 0.29 sec | |
| Start 222: pyinit::nrniv_pydef_nrnpython_check_sys_prefix | |
| 305/385 Test #218: pyinit::nrniv_pydef_nrnpython_check_sys_path ....................................... Passed 0.33 sec | |
| Start 224: pyinit::nrniv_pydef_python_check_sys_exec_prefix | |
| 306/385 Test #216: pyinit::nrniv_pydef_python_check_sys_path .......................................... Passed 0.37 sec | |
| Start 226: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix | |
| 307/385 Test #220: pyinit::nrniv_pydef_python_check_sys_prefix ........................................ Passed 0.28 sec | |
| Start 228: pyinit::nrniv_pydef_python_check_sys_base_prefix | |
| 308/385 Test #222: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ..................................... Passed 0.26 sec | |
| Start 230: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix | |
| 309/385 Test #224: pyinit::nrniv_pydef_python_check_sys_exec_prefix ................................... Passed 0.26 sec | |
| Start 232: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix | |
| 310/385 Test #212: pyinit::nrniv_py3.11_python_command_import_neuron .................................. Passed 0.82 sec | |
| Start 234: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix | |
| 311/385 Test #226: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ................................ Passed 0.29 sec | |
| Start 236: pyinit::nrniv_pydef_python_check_sys_stderr.encoding | |
| 312/385 Test #213: pyinit::py3.11_command_import_neuron ............................................... Passed 0.82 sec | |
| Start 238: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding | |
| 313/385 Test #228: pyinit::nrniv_pydef_python_check_sys_base_prefix ................................... Passed 0.31 sec | |
| Start 240: pyinit::nrniv_pydef_python_check_sys_stdin.encoding | |
| 314/385 Test #230: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ................................ Passed 0.33 sec | |
| Start 242: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding | |
| 315/385 Test #232: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix .............................. Passed 0.33 sec | |
| Start 244: pyinit::nrniv_pydef_python_check_sys_stdout.encoding | |
| 316/385 Test #234: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix ........................... Passed 0.32 sec | |
| Start 246: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding | |
| 317/385 Test #236: pyinit::nrniv_pydef_python_check_sys_stderr.encoding ............................... Passed 0.32 sec | |
| Start 248: pyinit::nrniv_pydef_python_command_import_neuron | |
| 318/385 Test #238: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding ............................ Passed 0.37 sec | |
| Start 249: pyinit::pydef_command_import_neuron | |
| 319/385 Test #240: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ................................ Passed 0.34 sec | |
| Start 250: pyinit::nrniv_pydef_hoc_command_nrnpython | |
| 320/385 Test #242: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ............................. Passed 0.32 sec | |
| Start 251: external_nrntest | |
| 321/385 Test #244: pyinit::nrniv_pydef_python_check_sys_stdout.encoding ............................... Passed 0.36 sec | |
| Start 259: external_ringtest_nrn::optim_node_order | |
| 322/385 Test #246: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding ............................ Passed 0.34 sec | |
| Start 273: external_ringtest::compare_soma_report_coreneuron_mpi_registermapping_directmode | |
| 323/385 Test #273: external_ringtest::compare_soma_report_coreneuron_mpi_registermapping_directmode ... Passed 0.02 sec | |
| Start 274: external_ringtest::compare_soma_report_coreneuron_mpi_registermapping_filemode | |
| 324/385 Test #274: external_ringtest::compare_soma_report_coreneuron_mpi_registermapping_filemode ..... Passed 0.02 sec | |
| Start 284: testcorenrn_bbcore::compare_results | |
| 325/385 Test #250: pyinit::nrniv_pydef_hoc_command_nrnpython .......................................... Passed 0.29 sec | |
| Start 294: testcorenrn_conc::compare_results | |
| 326/385 Test #284: testcorenrn_bbcore::compare_results ................................................ Passed 0.14 sec | |
| Start 304: testcorenrn_deriv::compare_results | |
| 327/385 Test #294: testcorenrn_conc::compare_results .................................................. Passed 0.13 sec | |
| Start 314: testcorenrn_gf::compare_results | |
| 328/385 Test #304: testcorenrn_deriv::compare_results ................................................. Passed 0.13 sec | |
| Start 324: testcorenrn_kin::compare_results | |
| 329/385 Test #314: testcorenrn_gf::compare_results .................................................... Passed 0.12 sec | |
| Start 332: testcorenrn_patstim::compare_results | |
| 330/385 Test #248: pyinit::nrniv_pydef_python_command_import_neuron ................................... Passed 0.76 sec | |
| Start 342: testcorenrn_vecplay::compare_results | |
| 331/385 Test #324: testcorenrn_kin::compare_results ................................................... Passed 0.13 sec | |
| Start 362: testcorenrn_watch::compare_results | |
| 332/385 Test #332: testcorenrn_patstim::compare_results ............................................... Passed 0.08 sec | |
| Start 365: testcorenrn_netstimdirect::compare_results | |
| 333/385 Test #249: pyinit::pydef_command_import_neuron ................................................ Passed 0.72 sec | |
| 334/385 Test #342: testcorenrn_vecplay::compare_results ............................................... Passed 0.07 sec | |
| Start 94: parallel::partrans | |
| 335/385 Test #362: testcorenrn_watch::compare_results ................................................. Passed 0.08 sec | |
| 336/385 Test #365: testcorenrn_netstimdirect::compare_results ......................................... Passed 0.07 sec | |
| Start 95: parallel::netpar | |
| 337/385 Test #94: parallel::partrans ................................................................. Passed 3.05 sec | |
| Start 96: parallel::bas | |
| 338/385 Test #95: parallel::netpar ................................................................... Passed 3.06 sec | |
| Start 97: parallel::nrntest_fast | |
| 339/385 Test #96: parallel::bas ...................................................................... Passed 5.47 sec | |
| Start 105: coreneuron_modtests::inputpresyn_py | |
| 340/385 Test #97: parallel::nrntest_fast ............................................................. Passed 6.33 sec | |
| Start 126: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 341/385 Test #105: coreneuron_modtests::inputpresyn_py ................................................ Passed 7.07 sec | |
| Start 152: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 342/385 Test #126: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................................... Passed 6.29 sec | |
| 343/385 Test #152: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................................... Passed 6.64 sec | |
| Start 347: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 344/385 Test #347: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......................... Passed 3.14 sec | |
| Start 351: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 345/385 Test #259: external_ringtest_nrn::optim_node_order ............................................ Passed 27.00 sec | |
| 346/385 Test #351: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......................... Passed 2.92 sec | |
| Start 380: olfactory-bulb-3d::neuron::preparation | |
| 347/385 Test #380: olfactory-bulb-3d::neuron::preparation ............................................. Passed 0.15 sec | |
| Start 382: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 348/385 Test #382: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............................. Passed 0.15 sec | |
| Start 384: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 349/385 Test #384: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............................. Passed 0.12 sec | |
| Start 252: reduced_dentate::neuron | |
| 350/385 Test #252: reduced_dentate::neuron ............................................................ Passed 97.36 sec | |
| Start 253: reduced_dentate::coreneuron_cpu | |
| 351/385 Test #251: external_nrntest ................................................................... Passed 190.04 sec | |
| 352/385 Test #374: channel_benchmark_sscx::coreneuron_gpu_online ...................................... Passed 310.29 sec | |
| 353/385 Test #368: channel_benchmark_hippo::coreneuron_gpu_online ..................................... Passed 323.37 sec | |
| Start 254: reduced_dentate::coreneuron_gpu | |
| 354/385 Test #369: channel_benchmark_hippo::coreneuron_gpu_filemode ................................... Passed 325.92 sec | |
| 355/385 Test #370: channel_benchmark_hippo::coreneuron_cpu_online ..................................... Passed 327.00 sec | |
| 356/385 Test #375: channel_benchmark_sscx::coreneuron_gpu_filemode .................................... Passed 318.02 sec | |
| 357/385 Test #371: channel_benchmark_hippo::coreneuron_cpu_filemode ................................... Passed 328.11 sec | |
| Start 343: testcorenrn_vecevent::neuron | |
| 358/385 Test #343: testcorenrn_vecevent::neuron ....................................................... Passed 2.00 sec | |
| Start 344: testcorenrn_vecevent::coreneuron_gpu_online | |
| 359/385 Test #253: reduced_dentate::coreneuron_cpu .................................................... Passed 84.61 sec | |
| Start 345: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 360/385 Test #373: channel_benchmark_sscx::neuron ..................................................... Passed 331.00 sec | |
| 361/385 Test #344: testcorenrn_vecevent::coreneuron_gpu_online ........................................ Passed 9.11 sec | |
| Start 346: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 362/385 Test #345: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....................... Passed 7.90 sec | |
| Start 348: testcorenrn_vecevent::coreneuron_cpu_online | |
| 363/385 Test #367: channel_benchmark_hippo::neuron .................................................... Passed 348.70 sec | |
| Start 372: channel_benchmark_hippo::compare_results | |
| 364/385 Test #372: channel_benchmark_hippo::compare_results ........................................... Passed 0.07 sec | |
| 365/385 Test #346: testcorenrn_vecevent::coreneuron_gpu_offline ....................................... Passed 4.94 sec | |
| Start 264: external_ringtest::coreneuron_cpu_mpi_threads | |
| 366/385 Test #348: testcorenrn_vecevent::coreneuron_cpu_online ........................................ Passed 2.83 sec | |
| Start 349: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 367/385 Test #349: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....................... Passed 3.08 sec | |
| Start 350: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 368/385 Test #264: external_ringtest::coreneuron_cpu_mpi_threads ...................................... Passed 4.11 sec | |
| Start 269: external_ringtest::coreneuron_gpu_mpi_threads | |
| 369/385 Test #350: testcorenrn_vecevent::coreneuron_cpu_offline ....................................... Passed 2.52 sec | |
| Start 379: olfactory-bulb-3d::neuron | |
| 370/385 Test #269: external_ringtest::coreneuron_gpu_mpi_threads ...................................... Passed 15.06 sec | |
| Start 381: olfactory-bulb-3d::coreneuron_gpu_online | |
| Start 272: external_ringtest::compare_results | |
| Start 352: testcorenrn_vecevent::compare_results | |
| 371/385 Test #352: testcorenrn_vecevent::compare_results .............................................. Passed 0.06 sec | |
| 372/385 Test #272: external_ringtest::compare_results ................................................. Passed 0.07 sec | |
| 373/385 Test #377: channel_benchmark_sscx::coreneuron_cpu_filemode .................................... Passed 311.04 sec | |
| 374/385 Test #376: channel_benchmark_sscx::coreneuron_cpu_online ...................................... Passed 317.67 sec | |
| Start 383: olfactory-bulb-3d::coreneuron_cpu_online | |
| 375/385 Test #254: reduced_dentate::coreneuron_gpu .................................................... Passed 78.93 sec | |
| Start 255: reduced_dentate::compare_results | |
| Start 378: channel_benchmark_sscx::compare_results | |
| 376/385 Test #378: channel_benchmark_sscx::compare_results ............................................ Passed 0.06 sec | |
| 377/385 Test #255: reduced_dentate::compare_results ................................................... Passed 0.07 sec | |
| 378/385 Test #381: olfactory-bulb-3d::coreneuron_gpu_online ........................................... Passed 54.49 sec | |
| Start 93: parallel::subworld | |
| 379/385 Test #93: parallel::subworld ................................................................. Passed 2.80 sec | |
| Start 127: coreneuron_modtests::test_subworlds_py_cpu | |
| 380/385 Test #127: coreneuron_modtests::test_subworlds_py_cpu ......................................... Passed 10.74 sec | |
| Start 153: coreneuron_modtests::test_subworlds_py_gpu | |
| 381/385 Test #153: coreneuron_modtests::test_subworlds_py_gpu ......................................... Passed 4.75 sec | |
| 382/385 Test #383: olfactory-bulb-3d::coreneuron_cpu_online ........................................... Passed 76.04 sec | |
| 383/385 Test #379: olfactory-bulb-3d::neuron .......................................................... Passed 147.94 sec | |
| Start 366: tqperf::coreneuron_special | |
| 384/385 Test #366: tqperf::coreneuron_special ......................................................... Passed 12.16 sec | |
| Start 385: olfactory-bulb-3d::compare_results | |
| 385/385 Test #385: olfactory-bulb-3d::compare_results ................................................. Passed 0.18 sec | |
| 99% tests passed, 1 tests failed out of 385 | |
| Total Test time (real) = 555.02 sec | |
| The following tests FAILED: | |
| 76 - hoctests::test_hoc_class_instance_py (Failed) | |
| Errors while running CTest | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| srun: error: ldir01u09: task 0: Exited with exit code 1 | |
| section_end:1714629049:step_script [0Ksection_start:1714629049:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=78289 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 8 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1265081 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=78441 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1265081 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1714629052:upload_artifacts_on_failure [0Ksection_start:1714629052:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1714629054:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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