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bbpbuildbot/GitLab logs for neuronsimulator-nrn#2909 Secret

Created June 17, 2024 20:00
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/217466 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2909.
Raw
build-neuron-nmodl-intel-legacy.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718651643:resolve_secrets Resolving secrets
section_end:1718651643:resolve_secrets section_start:1718651643:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor148883628, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 217466, build ref , job ID 1322290
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1322290_PROD_P2160_CP7_C5
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2255677
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322290_PROD_P2160_CP7_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --ntasks=2 --jobid=2255677 --cpus-per-task=8 --mem=160G
section_end:1718651645:prepare_executor section_start:1718651645:prepare_script Preparing environment
Using git from spack modules
Running on r1i7n20 via bbpv1.epfl.ch...
section_end:1718651648:prepare_script section_start:1718651648:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718651649:get_sources section_start:1718651649:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=252052 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718651655:restore_cache section_start:1718651655:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1322289)...
Runtime platform  arch=amd64 os=linux pid=252462 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1322289 responseStatus=200 OK token=glcbt-64
section_end:1718651656:download_artifacts section_start:1718651656:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466/J1322290_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/53hy2ex7xntc24cnbuojh6rrc3l2auap
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2255677/ccache
Config file: /nvme/bbpcihpcproj12/2255677/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Mon Jun 17 21:14:21 2024
Local storage:
Cache size (GB): 0.46 / 0.51 (90.13%)
Files: 10510
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/53hy2ex7xntc24cnbuojh6rrc3l2auap
Concretized
--------------------------------
- sghrr3b neuron@git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- fz3oxtc ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt
==> Installing neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z [49/49]
==> No binary for neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
26 errors found in build log:
2757 [ 35%] Running nrnivmodl-core with internal mod files
2758 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3
c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d
5fefjx2z/spack-build-sghrr3b/bin/nrnivmodl-core -b STATIC -m /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/i
nstall_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46
770aa12665_develop-53hy2e/bin/nmodl -n internal -p 4 .
2759 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi
5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/bin', compiling default o
nes only!
2760 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe
fjx2z/spack-build-sghrr3b MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software
/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d
46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
2761 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-build-sghrr3b/bin'
2762 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2763 make[3]: xcrun: No such file or directory
2764 Default NMODL flags:
>> 2765 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2766 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2767 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2768 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2769 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
2770 x86_64/corenrn/mod2c/exp2syn.cpp:295:9: warning: loop not vectoriz
ed: the optimizer was unable to perform the requested transformati
on; the transformation might be disabled or specified as part of a
n unsupported transformation ordering [-Wpass-failed=transform-war
ning]
2771 #pragma omp simd
...
3682 INFO:root:Extension common compile flags defaultdict(<class 'list'
>, {'library_dirs': ['/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu
3d5fefjx2z/spack-build-sghrr3b/lib'], 'libraries': ['nrniv'], 'lan
guage': 'c++'})
3683 INFO:root:RX3D is DISABLED
3684 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build
-sghrr3b/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e
840f9c938be979cceb8fe0
3685 cfiles =
3686 Mod files: "./follower.mod"[ 49%] Building CXX object src/nrniv/CM
akeFiles/nrniv.dir/__/oc/ockludge.cpp.o
3687 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322287/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu
3d5fefjx2z/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi
5cndfp4mhu3d5fefjx2z/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrniv -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack
-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72a
d175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13
22290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a
9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src
/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
7466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102
ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/s
pack-build-sghrr3b -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba
3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3
d5fefjx2z/spack-build-sghrr3b/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/src/nrnoc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build
-sghrr3b/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4
mhu3d5fefjx2z/spack-build-sghrr3b/src/oc -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-s
tage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-s
ghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/src/parallel -
I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J132
2290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9
971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-buil
d-sghrr3b/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4
mhu3d5fefjx2z/spack-build-sghrr3b/src/sundials/shared -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/gn
u -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J
1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405
5a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-s
rc/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fef
jx2z/spack-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5
cndfp4mhu3d5fefjx2z/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/scopmath -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/spar
se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/
J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40
55a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-
src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c
389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5
fefjx2z/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuro
n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgp
i5cndfp4mhu3d5fefjx2z/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-bu
ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17
5_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/sundials/
ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4
055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack
-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.
7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndf
p4mhu3d5fefjx2z/spack-build-sghrr3b/src/nrniv/oc_generated -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/iv
os -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/
J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40
55a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-
src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717
ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mh
u3d5fefjx2z/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-
stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-
sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrnpython/../nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13
22290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a
9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src
/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4
mhu3d5fefjx2z/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrnpython/../n
rnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174
66/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd
f4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spa
ck-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj
4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuro
n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgp
i5cndfp4mhu3d5fefjx2z/spack-src/external/eigen -march=skylake -mtu
ne=skylake -fopenmp-simd -g -O1 -fp-model precise -std=c++17 -pth
read -MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o -
MF CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o.d -o CMakeFiles/nrniv
.dir/__/oc/ockludge.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-src/src/oc/ockludge.cpp
>> 3688 "./gap.mod" "./name_clashes.mod" "./unitstest.mod"/gpfs/bbp.cscs.c
h/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-sk
ylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/site-packages/set
uptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer
and fetch_build_eggs are deprecated.
3689 !!
3690
3691 **********************************************************
**********************
3692 Requirements should be satisfied by a PEP 517 installer.
3693 If you are using pip, you can try `pip install --use-pep51
7`.
3694 **********************************************************
**********************
...
3701
3702 WARNING:root:WARNING: The wheel package is not available.
3703 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver
sion_macros.o
3704 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe
fjx2z/spack-build-sghrr3b MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
3705 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/c448d279dd3b9
1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
3706 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3707 make[3]: xcrun: No such file or directory
3708 Default NMODL flags:
>> 3709 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3710 [ 49%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/mo
dlreg.cpp.o
3711 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322287/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu
3d5fefjx2z/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi
5cndfp4mhu3d5fefjx2z/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrniv -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack
-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72a
d175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13
22290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a
9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src
/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
7466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102
ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/s
pack-build-sghrr3b -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba
3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3
d5fefjx2z/spack-build-sghrr3b/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/src/nrnoc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build
-sghrr3b/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4
mhu3d5fefjx2z/spack-build-sghrr3b/src/oc -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-s
tage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-s
ghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/src/parallel -
I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J132
2290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9
971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-buil
d-sghrr3b/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4
mhu3d5fefjx2z/spack-build-sghrr3b/src/sundials/shared -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/gn
u -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J
1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405
5a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-s
rc/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fef
jx2z/spack-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5
cndfp4mhu3d5fefjx2z/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/scopmath -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/spar
se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/
J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40
55a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-
src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c
389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5
fefjx2z/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuro
n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgp
i5cndfp4mhu3d5fefjx2z/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-bu
ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17
5_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/sundials/
ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4
055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack
-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.
7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndf
p4mhu3d5fefjx2z/spack-build-sghrr3b/src/nrniv/oc_generated -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/iv
os -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/
J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40
55a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-
src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717
ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mh
u3d5fefjx2z/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-
stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-
sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrnpython/../nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13
22290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a
9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src
/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4
mhu3d5fefjx2z/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrnpython/../n
rnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174
66/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd
f4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spa
ck-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj
4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuro
n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgp
i5cndfp4mhu3d5fefjx2z/spack-src/external/eigen -march=skylake -mtu
ne=skylake -fopenmp-simd -g -O1 -fp-model precise -std=c++17 -pth
read -MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/modlreg.cpp.o -M
F CMakeFiles/nrniv.dir/__/oc/modlreg.cpp.o.d -o CMakeFiles/nrniv.d
ir/__/oc/modlreg.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.7
717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp
4mhu3d5fefjx2z/spack-src/src/oc/modlreg.cpp
3712 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3713 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3714 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3715 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
...
4529 Translating version_macros.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-ne
uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2
hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/c448d2
79dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64/
version_macros.cpp
4530 Thread Safe
4531 Thread Safe
4532 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b'
4533 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-build-sghrr3b'
4534 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi
5cndfp4mhu3d5fefjx2z/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5
cndfp4mhu3d5fefjx2z/spack-src/test/external/ringtest /gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-bui
ld/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175
_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b /gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/
spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5
9c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sgh
rr3b/test/external/ringtest /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b/test/external/ringtest/CMakeF
iles/NRN_TEST_nrnivmodl_a9c54b18e4b54351cb4fd3e79067cafa02da4514b4
383a54de8ff121657615ff.dir/DependInfo.cmake "--color="
>> 4535 make[3]: xcrun: No such file or directory
4536 Default NMODL flags:
4537 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx
2z/spack-build-sghrr3b/test/nrnivmodl/c448d279dd3b91940d228c42e4a7
c280bafe100b4e840f9c938be979cceb8fe0/x86_64/follower.cpp
4538 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx
2z/spack-build-sghrr3b/test/nrnivmodl/c448d279dd3b91940d228c42e4a7
c280bafe100b4e840f9c938be979cceb8fe0/x86_64/unitstest.cpp
4539 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx
2z/spack-build-sghrr3b/test/nrnivmodl/c448d279dd3b91940d228c42e4a7
c280bafe100b4e840f9c938be979cceb8fe0/x86_64/version_macros.cpp
>> 4540 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4541 [ 55%] Built target vclamp_cpp
4542 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b'
4543 make -f test/external/ringtest/CMakeFiles/NRN_TEST_nrnivmodl_a9c5
4b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff.dir/b
uild.make test/external/ringtest/CMakeFiles/NRN_TEST_nrnivmodl_a9c
54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff.dir/
build
4544 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-build-sghrr3b'
4545 [ 55%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
4546 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/red
uced_dentate//mechanisms/Aradi_KA.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-
neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3
b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi
_KA.mod
...
4604 [ 55%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
4605 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/red
uced_dentate//mechanisms/DGC_UK.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-ne
uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2
hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.
mod
4606 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe
fjx2z/spack-build-sghrr3b MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4607 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
4608 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4609 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/ae2c9b73c9a624
bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/x86_64/./libnrn
mech.so"
>> 4610 make[3]: xcrun: No such file or directory
4611 Default NMODL flags:
4612 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx
2z/spack-build-sghrr3b/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/cacur.cpp
4613 [ 55%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
4614 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/red
uced_dentate//mechanisms/DGC_sAHP.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-
neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3
b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_s
AHP.mod
>> 4615 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4616 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4617 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4618 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4619 [ 55%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
4620 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/red
uced_dentate//mechanisms/Gfluct3.mod /gpfs/bbp.cscs.ch/ssd/gitlab_
map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-n
euron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b
2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/53c43
2f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct
3.mod
4621 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
...
4830 #pragma omp simd
4831 ^
4832 x86_64/corenrn/mod2c/expsyn.cpp:392:9: warning: loop not vectorize
d: the optimizer was unable to perform the requested transformatio
n; the transformation might be disabled or specified as part of an
unsupported transformation ordering [-Wpass-failed=transform-warn
ing]
4833 #pragma omp simd
4834 ^
4835 4 warnings generated.
>> 4836 make[3]: xcrun: No such file or directory
4837 Default NMODL flags:
>> 4838 make[3]: xcrun: No such file or directory
4839 Default NMODL flags:
4840 x86_64/corenrn/mod2c/exp2syn.cpp:295:9: warning: loop not vectoriz
ed: the optimizer was unable to perform the requested transformati
on; the transformation might be disabled or specified as part of a
n unsupported transformation ordering [-Wpass-failed=transform-war
ning]
4841 #pragma omp simd
4842 ^
4843 x86_64/corenrn/mod2c/exp2syn.cpp:329:13: warning: loop not vectori
zed: the optimizer was unable to perform the requested transformat
ion; the transformation might be disabled or specified as part of
an unsupported transformation ordering [-Wpass-failed=transform-wa
rning]
4844 #pragma omp simd
...
4851 ^
4852 4 warnings generated.
4853 x86_64/corenrn/mod2c/halfgap.cpp:271:9: warning: loop not vectoriz
ed: the optimizer was unable to perform the requested transformati
on; the transformation might be disabled or specified as part of a
n unsupported transformation ordering [-Wpass-failed=transform-war
ning]
4854 #pragma omp simd
4855 ^
4856 1 warning generated.
>> 4857 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
>> 4858 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4859 [NMODL] [warning] :: Can not inline function call to mynormrand
4860 [NMODL] [warning] :: Can not inline function call to mynormrand
4861 [NMODL] [warning] :: Can not inline function call to mynormrand
4862 [NMODL] [warning] :: Can not inline function call to mynormrand
4863 [ 57%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/Ca_LVAst.mod
4864 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/Ca_LVAst.mod /gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/sp
ack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c
72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr
3b/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963d
c6fd47c3be88641a/Ca_LVAst.mod
...
5106 cfiles =
5107 [ 59%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/cagk.mod
5108 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/cagk.mod /gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/t
est/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd
47c3be88641a/cagk.mod
5109 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe
fjx2z/spack-build-sghrr3b MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5110 Mod files:make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage
-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr
3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/53c
432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
5111 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5112 "./Gfluct.mod" "./ThreshDetect.mod"make[3]: xcrun: No such file or
directory
5113 Default NMODL flags:
5114 "./ampanmda.mod" "./distrt.mod"[ 59%] Generating ../../nrnivmodl/
3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/c
al2.mod
5115 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/cal2.mod /gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/t
est/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd
47c3be88641a/cal2.mod
>> 5116 "./fi.mod" "./fi_stdp.mod"diff: x86_64/corenrn/mod2c/_mod_func.cp
p: No such file or directory
5117 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5118 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5119 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5120 "./gap.mod" "./kamt.mod" "./kdrmt.mod" "./ks.mod" "./naxn.mod"[NM
ODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> def
inition in NMODL_GLOBAL
5121 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5122 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
...
5207 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kd.mod /gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-bu
ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17
5_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/tes
t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47
c3be88641a/kd.mod
5208 [ 59%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/kd2.mod
5209 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kd2.mod /gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-b
uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1
75_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/te
st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4
7c3be88641a/kd2.mod
5210 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe
fjx2z/spack-build-sghrr3b MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5211 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/14c92ceb412f1
b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
5212 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5213 make[3]: xcrun: No such file or directory
5214 Default NMODL flags:
5215 x86_64/corenrn/mod2c/svclmp.cpp:307:13: warning: loop not vectoriz
ed: the optimizer was unable to perform the requested transformati
on; the transformation might be disabled or specified as part of a
n unsupported transformation ordering [-Wpass-failed=transform-war
ning]
5216 #pragma omp simd
5217 ^
5218 x86_64/corenrn/mod2c/svclmp.cpp:374:9: warning: loop not vectorize
d: the optimizer was unable to perform the requested transformatio
n; the transformation might be disabled or specified as part of an
unsupported transformation ordering [-Wpass-failed=transform-warn
ing]
5219 #pragma omp simd
...
5223 ^
5224 3 warnings generated.
5225 x86_64/corenrn/mod2c/invlfiresha.cpp:589:13: warning: loop not vec
torized: the optimizer was unable to perform the requested transfo
rmation; the transformation might be disabled or specified as part
of an unsupported transformation ordering [-Wpass-failed=transfor
m-warning]
5226 #pragma omp simd
5227 ^
5228 1 warning generated.
>> 5229 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5230 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5231 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5232 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5233 [ 59%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/kdb.mod
5234 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kdb.mod /gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-b
uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1
75_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/te
st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4
7c3be88641a/kdb.mod
5235 x86_64/corenrn/mod2c/invlfirestats.cpp:445:13: warning: loop not v
ectorized: the optimizer was unable to perform the requested trans
formation; the transformation might be disabled or specified as pa
rt of an unsupported transformation ordering [-Wpass-failed=transf
orm-warning]
...
5811 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe
fjx2z/spack-build-sghrr3b MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5812 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/3a24bd33c51ee
30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a'
5813 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
5814 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b'
5815 make -f test/CMakeFiles/copy-scripts-pytest-basic_tests_py3.11.di
r/build.make test/CMakeFiles/copy-scripts-pytest-basic_tests_py3.1
1.dir/build
5816 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-build-sghrr3b'
>> 5817 make[3]: xcrun: No such file or directory
5818 Default NMODL flags:
>> 5819 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5820 [ 59%] Generating pytest/basic_tests_py3.11/test/pytest/test_nrnte
st_thread.json
5821 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.771
7ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4m
hu3d5fefjx2z/spack-src//test/pytest/test_nrntest_thread.json /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghr
r3b/test/pytest/basic_tests_py3.11/test/pytest/test_nrntest_thread
.json
5822 [ 59%] Generating pytest/basic_tests_py3.11/test/pytest/test_nrnte
st_thread.py
5823 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.771
7ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4m
hu3d5fefjx2z/spack-src//test/pytest/test_nrntest_thread.py /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3
b/test/pytest/basic_tests_py3.11/test/pytest/test_nrntest_thread.p
y
5824 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b'
5825 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx
2z/spack-build-sghrr3b/share/nrn/demo/release/x86_64/release.cpp
...
7189 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sg
hrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/ringtest//
test_optimize_node_order.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b/test/external_ringtest/neuron
_mpi_python/test_optimize_node_order.py
7190 [ 66%] Generating ../../external_ringtest/neuron_mpi/cell.hoc
7191 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sg
hrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/ringtest//
cell.hoc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217
466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102d
df4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/sp
ack-build-sghrr3b/test/external_ringtest/neuron_mpi/cell.hoc
7192 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx
2z/spack-build-sghrr3b/test/nrnivmodl/14c92ceb412f1b4e766bfda05bec
75b2d552a2f4499313751329f0689cf9faab/x86_64/fi.cpp
7193 [ 66%] Generating ../../external_ringtest/coreneuron_cpu_mpi/commo
nutils.py
7194 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sg
hrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/ringtest//
commonutils.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f
35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefj
x2z/spack-build-sghrr3b/test/external_ringtest/coreneuron_cpu_mpi/
commonutils.py
>> 7195 ampanmda.cpp:605:36: error: use of undeclared identifier '_globals
'
7196 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] ) ;
7197 ^
7198 ampanmda.cpp:49:55: note: expanded from macro '_threadargscomma_'
7199 #define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _n
t,
7200 ^
7201 1 error generated.
>> 7202 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 1
7203 make[3]: *** Waiting for unfinished jobs....
7204 [ 66%] Generating ../../external_ringtest_nrn/optim_node_order/cel
luniform.hoc
7205 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sg
hrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/ringtest//
celluniform.hoc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fef
jx2z/spack-build-sghrr3b/test/external_ringtest_nrn/optim_node_ord
er/celluniform.hoc
7206 [ 66%] Generating ../../external_ringtest/coreneuron_cpu_mpi_threa
ds/commonutils.py
7207 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sg
hrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/ringtest//
commonutils.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f
35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefj
x2z/spack-build-sghrr3b/test/external_ringtest/coreneuron_cpu_mpi_
threads/commonutils.py
7208 [ 66%] Generating ../../external_ringtest/neuron_mpi/celluniform.h
oc
...
7405 make -f test/external/testcorenrn/CMakeFiles/copy-scripts-testcor
enrn_conc-coreneuron_cpu_online.dir/build.make test/external/testc
orenrn/CMakeFiles/copy-scripts-testcorenrn_conc-coreneuron_cpu_onl
ine.dir/build
7406 [ 68%] Built target copy-scripts-testcorenrn_bbcore-coreneuron_cpu
_online_psolve_alternate
7407 make -f test/external/testcorenrn/CMakeFiles/copy-scripts-testcor
enrn_deriv-neuron.dir/build.make test/external/testcorenrn/CMakeFi
les/copy-scripts-testcorenrn_deriv-neuron.dir/depend
7408 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-build-sghrr3b'
7409 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi
5cndfp4mhu3d5fefjx2z/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5
cndfp4mhu3d5fefjx2z/spack-src/test/external/testcorenrn /gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b /
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13222
90/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a997
1c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-
sghrr3b/test/external/testcorenrn /gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neur
on-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hg
pi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/external/testcoren
rn/CMakeFiles/copy-scripts-testcorenrn_conc-coreneuron_cpu_online_
psolve_alternate.dir/DependInfo.cmake "--color="
7410 make -f test/external/testcorenrn/CMakeFiles/copy-scripts-testcor
enrn_deriv-coreneuron_cpu_online.dir/build.make test/external/test
corenrn/CMakeFiles/copy-scripts-testcorenrn_deriv-coreneuron_cpu_o
nline.dir/depend
>> 7411 fi.cpp:479:36: error: use of undeclared identifier '_globals'
7412 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] ) ;
7413 ^
7414 fi.cpp:49:55: note: expanded from macro '_threadargscomma_'
7415 #define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _n
t,
7416 ^
7417 1 error generated.
>> 7418 make[3]: *** [makemod2c_inc:39: fi.o] Error 1
7419 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/14c92ceb412f1b
4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64'
>> 7420 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_
nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068
9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd
a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2
7421 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b'
>> 7422 make[1]: *** [CMakeFiles/Makefile2:9702: test/external/olfactory-b
ulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec7
5b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2
7423 make[1]: *** Waiting for unfinished jobs....
7424 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-build-sghrr3b'
7425 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-build-sghrr3b'
7426 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi
5cndfp4mhu3d5fefjx2z/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5
cndfp4mhu3d5fefjx2z/spack-src/test/external/testcorenrn /gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b /
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13222
90/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a997
1c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-
sghrr3b/test/external/testcorenrn /gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neur
on-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hg
pi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/external/testcoren
rn/CMakeFiles/copy-scripts-testcorenrn_deriv-neuron.dir/DependInfo
.cmake "--color="
7427 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn
dfp4mhu3d5fefjx2z/spack-build-sghrr3b'
7428 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu
ild-sghrr3b && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi
5cndfp4mhu3d5fefjx2z/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5
cndfp4mhu3d5fefjx2z/spack-src/test/external/testcorenrn /gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b /
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13222
90/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a997
1c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-
sghrr3b/test/external/testcorenrn /gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neur
on-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hg
pi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/external/testcoren
rn/CMakeFiles/copy-scripts-testcorenrn_deriv-coreneuron_cpu_online
.dir/DependInfo.cmake "--color="
...
8209 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.771
7ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4m
hu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/3a24bd33c51ee30c68
f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64/./special" L
DFLAGS are:
8210 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/3a24bd33c51ee3
0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64'
8211 Successfully created x86_64/special
8212 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b'
8213 [ 69%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1
46a37c165552933d5963dc6fd47c3be88641a
8214 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd
fp4mhu3d5fefjx2z/spack-build-sghrr3b'
>> 8215 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322290/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i7n20: task 0: Exited with exit code 1
section_end:1718652800:step_script section_start:1718652800:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=297158 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1322290 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=297202 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1322290 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=297245 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1322290 responseStatus=201 Created token=glcbt-64
section_end:1718652802:upload_artifacts_on_failure section_start:1718652802:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718652803:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-intel-shared.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718651643:resolve_secrets Resolving secrets
section_end:1718651643:resolve_secrets section_start:1718651643:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor658050721, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 217466, build ref , job ID 1322291
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1322291_PROD_P2160_CP13_C22
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2255678
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322291_PROD_P2160_CP13_C22 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --ntasks=2 --jobid=2255678 --cpus-per-task=8 --mem=160G
section_end:1718651647:prepare_executor section_start:1718651647:prepare_script Preparing environment
Using git from spack modules
Running on r4i6n21 via bbpv1.epfl.ch...
section_end:1718651650:prepare_script section_start:1718651650:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718651651:get_sources section_start:1718651651:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:shared-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=115697 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718651658:restore_cache section_start:1718651658:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1322289)...
Runtime platform  arch=amd64 os=linux pid=115794 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1322289 responseStatus=200 OK token=glcbt-64
section_end:1718651660:download_artifacts section_start:1718651660:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466/J1322291_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/53hy2ex7xntc24cnbuojh6rrc3l2auap
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255678/ccache
Config file: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255678/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Mon Jun 17 21:14:34 2024
Local storage:
Cache size (GB): 0.47 / 0.51 (91.35%)
Files: 10379
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/53hy2ex7xntc24cnbuojh6rrc3l2auap
Concretized
--------------------------------
- 455jgpo neuron@git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- fz3oxtc ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul [43/49]
==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul
Stage: 1.56s. Cmake: 4.36s. Build: 1.43s. Install: 0.09s. Post-install: 0.09s. Total: 7.67s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e
==> Installing neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-455jgpouumhzavkmo6n4aq25lyicr5ea [49/49]
==> No binary for neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-455jgpouumhzavkmo6n4aq25lyicr5ea found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
24 errors found in build log:
2764 [ 34%] Built target coreneuron-for-tests
2765 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3
c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25
lyicr5ea/spack-build-455jgpo/bin/nrnivmodl-core -b SHARED -m /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/i
nstall_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46
770aa12665_develop-53hy2e/bin/nmodl -n internal -p 4 .
2766 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhz
avkmo6n4aq25lyicr5ea/spack-build-455jgpo/bin', compiling default o
nes only!
2767 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyi
cr5ea/spack-build-455jgpo MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software
/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d
46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
2768 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo/bin'
2769 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2770 make[3]: xcrun: No such file or directory
2771 Default NMODL flags:
>> 2772 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2773 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2774 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2775 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2776 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo'
2777 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
2778 [ 34%] Built target nrnpython
...
3689 INFO:root:Extension common compile flags defaultdict(<class 'list'
>, {'library_dirs': ['/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq
25lyicr5ea/spack-build-455jgpo/lib'], 'libraries': ['nrniv'], 'lan
guage': 'c++'})
3690 INFO:root:RX3D is DISABLED
3691 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build
-455jgpo/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e
840f9c938be979cceb8fe0
3692 cfiles =
3693 Mod files: "./follower.mod" "./gap.mod"[ 47%] Building CXX object
src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o
3694 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322287/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq
25lyicr5ea/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhz
avkmo6n4aq25lyicr5ea/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/nrniv -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack
-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72a
d175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13
22291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a
9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src
/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
7466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102
ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/s
pack-build-455jgpo -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba
3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq2
5lyicr5ea/spack-build-455jgpo/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/src/nrnoc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build
-455jgpo/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n
4aq25lyicr5ea/spack-build-455jgpo/src/oc -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-s
tage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-4
55jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/src/parallel -
I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J132
2291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9
971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-buil
d-455jgpo/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n
4aq25lyicr5ea/spack-build-455jgpo/src/sundials/shared -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/gn
u -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J
1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405
5a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-s
rc/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyic
r5ea/spack-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhza
vkmo6n4aq25lyicr5ea/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/scopmath -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/spar
se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/
J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40
55a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-
src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c
389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25l
yicr5ea/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuro
n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumh
zavkmo6n4aq25lyicr5ea/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-bu
ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17
5_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/sundials/
ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4
055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack
-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.
7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo
6n4aq25lyicr5ea/spack-build-455jgpo/src/nrniv/oc_generated -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/iv
os -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/
J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40
55a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-
src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717
ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4a
q25lyicr5ea/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-
stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-
455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/nrnpython/../nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13
22291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a
9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src
/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n
4aq25lyicr5ea/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/nrnpython/../n
rnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174
66/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd
f4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spa
ck-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj
4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuro
n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumh
zavkmo6n4aq25lyicr5ea/spack-src/external/eigen -march=skylake -mtu
ne=skylake -fopenmp-simd -g -O1 -fp-model precise -std=c++17 -pth
read -MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o -
MF CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o.d -o CMakeFiles/nrniv
.dir/__/oc/ockludge.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-src/src/oc/ockludge.cpp
>> 3695 "./name_clashes.mod"/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3x
bqx/lib/python3.11/site-packages/setuptools/__init__.py:84: _Depre
catedInstaller: setuptools.installer and fetch_build_eggs are depr
ecated.
3696 !!
3697
3698 **********************************************************
**********************
3699 Requirements should be satisfied by a PEP 517 installer.
3700 If you are using pip, you can try `pip install --use-pep51
7`.
3701 **********************************************************
**********************
...
3708 Creating 'x86_64' directory for .o files.
3709
3710 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver
sion_macros.o
3711 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyi
cr5ea/spack-build-455jgpo MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
3712 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/c448d279dd3b9
1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
3713 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3714 make[3]: xcrun: No such file or directory
3715 Default NMODL flags:
3716 [ 47%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/mo
dlreg.cpp.o
3717 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322287/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq
25lyicr5ea/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhz
avkmo6n4aq25lyicr5ea/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/nrniv -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack
-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72a
d175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13
22291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a
9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src
/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
7466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102
ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/s
pack-build-455jgpo -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba
3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq2
5lyicr5ea/spack-build-455jgpo/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/src/nrnoc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build
-455jgpo/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n
4aq25lyicr5ea/spack-build-455jgpo/src/oc -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-s
tage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-4
55jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/src/parallel -
I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J132
2291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9
971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-buil
d-455jgpo/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n
4aq25lyicr5ea/spack-build-455jgpo/src/sundials/shared -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/gn
u -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J
1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405
5a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-s
rc/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyic
r5ea/spack-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhza
vkmo6n4aq25lyicr5ea/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/scopmath -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/spar
se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/
J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40
55a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-
src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c
389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25l
yicr5ea/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuro
n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumh
zavkmo6n4aq25lyicr5ea/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-bu
ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17
5_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/sundials/
ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4
055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack
-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.
7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo
6n4aq25lyicr5ea/spack-build-455jgpo/src/nrniv/oc_generated -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/iv
os -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/
J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40
55a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-
src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717
ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4a
q25lyicr5ea/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-
stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-
455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/nrnpython/../nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13
22291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a
9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src
/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n
4aq25lyicr5ea/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/src/nrnpython/../n
rnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174
66/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd
f4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spa
ck-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj
4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuro
n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumh
zavkmo6n4aq25lyicr5ea/spack-src/external/eigen -march=skylake -mtu
ne=skylake -fopenmp-simd -g -O1 -fp-model precise -std=c++17 -pth
read -MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/modlreg.cpp.o -M
F CMakeFiles/nrniv.dir/__/oc/modlreg.cpp.o.d -o CMakeFiles/nrniv.d
ir/__/oc/modlreg.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7
717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6
n4aq25lyicr5ea/spack-src/src/oc/modlreg.cpp
>> 3718 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3719 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3720 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3721 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3722 [ 47%] Linking CXX executable ../../bin/nrniv
3723 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
n/cmake -E cmake_link_script CMakeFiles/nrniv.dir/link.txt --verbo
se=1
3724 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
...
4511 ^
4512 3 warnings generated.
4513 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyi
cr5ea/spack-build-455jgpo MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
4514 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
4515 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4516 [ 52%] Built target sections_c
>> 4517 make[3]: xcrun: No such file or directory
4518 Default NMODL flags:
>> 4519 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4520 [ 52%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
4521 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/external/tests/red
uced_dentate//mechanisms/Aradi_KA.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-
neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgp
ouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi
_KA.mod
4522 [ 52%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
4523 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/external/tests/red
uced_dentate//mechanisms/Aradi_KDRf.mod /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stag
e-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455j
gpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/53
c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Ara
di_KDRf.mod
4524 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/ae2c9b73c9a624
bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/x86_64'
4525 Successfully created x86_64/special
...
4603 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5
ea/spack-build-455jgpo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/cacur.cpp
4604 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyi
cr5ea/spack-build-455jgpo MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
4605 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
4606 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4607 [ 53%] Linking CXX executable ../bin/test/testneuron
4608 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E cmake_link_script CMakeFiles/testneuron.dir/link.txt --verbo
se=1
>> 4609 make[3]: xcrun: No such file or directory
4610 Default NMODL flags:
4611 [ 53%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/LcaMig.mod
4612 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/external/tests/red
uced_dentate//mechanisms/LcaMig.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-ne
uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpou
umhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.
mod
4613 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4614 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4615 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4616 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
287/spack/lib/spack/env/oneapi/icpx -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise CMakeFiles/testneuron.dir/
common/catch2_main.cpp.o CMakeFiles/testneuron.dir/unit_tests/basi
c.cpp.o CMakeFiles/testneuron.dir/unit_tests/iovec.cpp.o CMakeFile
s/testneuron.dir/unit_tests/container/container.cpp.o CMakeFiles/t
estneuron.dir/unit_tests/container/generic_data_handle.cpp.o CMake
Files/testneuron.dir/unit_tests/container/mechanism.cpp.o CMakeFil
es/testneuron.dir/unit_tests/container/node.cpp.o CMakeFiles/testn
euron.dir/unit_tests/node_order_optim/permutations.cpp.o CMakeFile
s/testneuron.dir/unit_tests/utils/enumerate.cpp.o CMakeFiles/testn
euron.dir/unit_tests/oc/hoc_interpreter.cpp.o CMakeFiles/testneuro
n.dir/cover/unit_tests/cover.cpp.o -o ../bin/test/testneuron -Wl,
-rpath,/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21746
6/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf
4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spac
k-build-455jgpo/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/lib:/g
pfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install
_gcc-12.3.0-skylake/readline-8.2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/
apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/
ncurses-6.4-6kdbhv/lib ../lib/libCatch2.a ../lib/libnrniv.so -ldl
../lib/libnrngnu.a ../lib/libsparse13.a /gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-
3.11.6-bj4i6m/lib/libpython3.11.so -pthread /gpfs/bbp.cscs.ch/ssd/
apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/
readline-8.2-pdugg7/lib/libreadline.so /gpfs/bbp.cscs.ch/ssd/apps/
bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurs
es-6.4-6kdbhv/lib/libcurses.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6
kdbhv/lib/libform.so -ldl
>> 4617 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4618 [ 53%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33
00792f8f757b926b965c058a4d6ee876/hhwatch.mod
4619 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-
3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/external/tests/testcor
enrn//mod/hhwatch.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq
25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/b62f97c7d3f6d905c774
d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod
4620 [ 53%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
4621 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/external/tests/red
uced_dentate//mechanisms/SH_KIn.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-ne
uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpou
umhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.
mod
4622 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4623 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
...
4708 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyi
cr5ea/spack-build-455jgpo MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
4709 [ 54%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/kcaPR.mod
4710 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/external/tests/red
uced_dentate//mechanisms/kcaPR.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neu
ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouu
mhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/53c432f
7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mo
d
4711 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/b62f97c7d3f6d
905c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
4712 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4713 MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o
>> 4714 make[3]: xcrun: No such file or directory
4715 Default NMODL flags:
4716 [NMODL] [warning] :: Can not inline function call to mynormrand
4717 [NMODL] [warning] :: Can not inline function call to mynormrand
4718 [NMODL] [warning] :: Can not inline function call to mynormrand
4719 [NMODL] [warning] :: Can not inline function call to mynormrand
>> 4720 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4721 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/bbd7c82eee28b9
31214a8172bb776ba66c406a6620c807381c850fedcdd74295/x86_64/./libnrn
mech.so"
4722 [ 54%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/na3n.mod
4723 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/external/tests/red
uced_dentate//mechanisms/na3n.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neur
on-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouum
hzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/53c432f7
080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
4724 [ 54%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/nca.mod
4725 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/external/tests/red
uced_dentate//mechanisms/nca.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuro
n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumh
zavkmo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/53c432f70
80fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod
4726 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/c448d279dd3b91
940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64'
...
4739 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyi
cr5ea/spack-build-455jgpo INCFLAGS=-I/usr/include LINKFLAGS=/usr/l
ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=SHARED
NRN_PRCELLSTATE=0
4740 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo'
4741 make -f test/external/channel-benchmark/CMakeFiles/NRN_TEST_nrniv
modl_3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47c3be886
41a.dir/build.make test/external/channel-benchmark/CMakeFiles/NRN_
TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6f
d47c3be88641a.dir/build
4742 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/f7f437ac4f0ea
140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c'
4743 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4744 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo'
>> 4745 make[3]: xcrun: No such file or directory
4746 Default NMODL flags:
4747 [ 55%] Building special[-core] for test group reduced_dentate
4748 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425
d200c645a6b4cec93b5edfead && cmake -E env NEURONHOME=/gpfs/bbp\.cs
cs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-b
uild/spack-stage-neuron-git\.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/s
hare/nrn NRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P217466/J1322291/spack-build/spack-stage-neuron-git\.7717ba3
c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25
lyicr5ea/spack-build-455jgpo PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-ne
uron-git\.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpo
uumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/bin:/gpfs/bbp\.cscs\
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.
0-skylake/readline-8\.2-pdugg7/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-co
verage-7\.2\.6-wuxetk/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02
-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3
\.2-lrf2u3/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/bi
n:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/bin:/gpfs/bbp
\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/ins
tall_gcc-12\.3\.0-skylake/nmodl-git\.5ff221d045c92389b4cab5ee159d4
6770aa12665_develop-53hy2e/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy-
1\.11\.1-t5tove/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1
-tabj2m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5d
ylnc/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
17466/software/install_oneapi-2023\.2\.0-skylake/libsonata-report-
git\.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/bin:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12\.3\.0-skylake/gettext-0\.22\.3-nbi5w5/bin:/gpfs/bbp\.cs
cs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.
3\.0-skylake/pigz-2\.7-dwjcgu/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/ncurse
s-6\.4-6kdbhv/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12\.3\.0-skylake/pkgconf-1\.9\.5-e533uu
/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_application
s/install_gcc-12\.3\.0-skylake/gmake-4\.4\.1-swjylu/bin:/gpfs/bbp\
.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2\.3\.0-skylake/xz-5\.4\.1-wwn5en/bin:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/zs
td-1\.5\.5-aivjoo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_applications/install_gcc-12\.3\.0-skylake/bzip2-1\.0\.8-vdqw
mg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals
/install_gcc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\
.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch/ssd/a
pps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/in
tel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-
12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.csc
s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0
-skylake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.
6\.3-edx4lf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_
externals/install_gcc-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install
_gcc-12\.3\.0-skylake/bison-3\.8\.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/lib/spa
ck/env/oneapi:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322287/spack/lib/spack/env/case-insensitive:/gpfs/bbp
\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spa
ck/lib/spack/env:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023
\.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake
/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gp
fs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_g
cc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skyl
ake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/202
4-02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27
\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.6\.3-edx4lf/b
in:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/ins
tall_gcc-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/gpfs/bbp\.csc
s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0
-skylake/m4-1\.4\.19-wtcpud/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2
024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/bison-3\.8\
.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_co
mpilers/install_gcc-4\.8\.5-haswell/binutils-2\.41-o6yabj/bin:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gc
c-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compile
r/2023\.2\.1/linux/lib/oclfpga/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-one
api-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin/inte
l64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/in
stall_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y
/compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P217466/bootstrap/store/linux-centos7-x86_64/g
cc-10\.2\.1/patchelf-0\.18\.0-afv7arjarb7nzmlh7c5slkfxykybuqce/bin
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/insta
ll_gcc-12\.3\.0-skylake/ccache-4\.7\.4-eompz5/bin:/gpfs/bbp\.cscs\
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/bin:
/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/instal
l_gcc-12\.3\.0-skylake/git-2\.42\.0-sie4gc/bin:/opt/clmgr/sbin:/op
t/clmgr/bin:/opt/sgi/sbin:/opt/sgi/bin:/usr/lib64/qt-3\.3/bin:/usr
/lib64/ccache:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sb
in:/gpfs/bbp\.cscs\.ch/ssd/apps/bb5/systemtools:/opt/c3/bin:/opt/d
dn/ime/bin:/opt/puppetlabs/bin:/sbin:/bin:/gpfs/bbp\.cscs\.ch/home
/bbpcihpcproj12/\.local/bin:/gpfs/bbp\.cscs\.ch/home/bbpcihpcproj1
2/bin LD_LIBRARY_PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git\.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n
4aq25lyicr5ea/spack-build-455jgpo/lib:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/intel
-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/lib/intel64:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\
.3\.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/li
b/intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/li
b:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/inst
all_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/c
ompiler/2023\.2\.1/linux/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024
-02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-co
mpilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/lib/x64:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-
4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/
2023\.2\.1/linux/lib/oclfpga/host/linux64/lib:/gpfs/bbp\.cscs\.ch/
ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswel
l/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/lin
ux/compiler/lib/intel64_lin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-
02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.
p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12\.3\.0-skylake/hdf5-1\.14\.3-5o77ye
/lib CORENRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P217466/J1322291/spack-build/spack-stage-neuron-git\.7717ba3
c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25
lyicr5ea/spack-build-455jgpo PYTHONPATH=/gpfs/bbp\.cscs\.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-st
age-neuron-git\.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-4
55jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/lib/python:/gp
fs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13222
91/spack-build/spack-stage-neuron-git\.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/t
est/rxd:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
7466/software/install_gcc-12\.3\.0-skylake/nmodl-git\.5ff221d045c9
2389b4cab5ee159d46770aa12665_develop-53hy2e/lib:/gpfs/bbp\.cscs\.c
h/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_gcc-
12\.3\.0-skylake/nmodl-git\.5ff221d045c92389b4cab5ee159d46770aa126
65_develop-53hy2e/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_applications/install_gcc-12\.3\.0-skylake/py-pytest-cov-4\.0
\.0-z5nf6n/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/a
pps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake
/py-coverage-7\.2\.6-wuxetk/lib/python3\.11/site-packages:/gpfs/bb
p\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc
-12\.3\.0-skylake/py-pytest-7\.3\.2-lrf2u3/lib/python3\.11/site-pa
ckages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicati
ons/install_gcc-12\.3\.0-skylake/py-iniconfig-2\.0\.0-mvxx6g/lib/p
ython3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12\.3\.0-skylake/py-pluggy-1\.0\
.0-6su7kv/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/ap
ps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/
py-numpy-1\.26\.1-elr5pn/lib/python3\.11/site-packages:/gpfs/bbp\.
cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12
\.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/lib/python3\.11/site-packa
ges:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications
/install_gcc-12\.3\.0-skylake/py-sympy-1\.11\.1-t5tove/lib/python3
\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/sta
ge_applications/install_gcc-12\.3\.0-skylake/py-mpmath-1\.2\.1-4ff
lyi/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pac
kaging-23\.1-uqml2t/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.
0-skylake/py-pyyaml-5\.4\.1-2inh3r/lib/python3\.11/site-packages:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1-tabj2m/lib/python3\.
11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_applications/install_gcc-12\.3\.0-skylake/py-jinja2-3\.1\.2-7vali
d/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2
024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-marku
psafe-2\.1\.3-r3ehtm/lib/python3\.11/site-packages:/gpfs/bbp\.cscs
\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\
.0-skylake/py-find-libpython-0\.3\.1-5dylnc/lib/python3\.11/site-p
ackages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicat
ions/install_gcc-12\.3\.0-skylake/py-setuptools-68\.0\.0-p3xbqx/li
b/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-
02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pip-23\.1
\.2-77ku3v/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/a
pps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake
/py-coverage-7\.2\.6-wuxetk/lib/python3\.11/site-packages:/gpfs/bb
p\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc
-12\.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/lib/python3\.11/site-pa
ckages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicati
ons/install_gcc-12\.3\.0-skylake/py-iniconfig-2\.0\.0-mvxx6g/lib/p
ython3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12\.3\.0-skylake/py-packaging-23
\.1-uqml2t/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/a
pps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake
/py-mpmath-1\.2\.1-4fflyi/lib/python3\.11/site-packages:/gpfs/bbp\
.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/lib/python3\.11/site-packag
es:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/
install_gcc-12\.3\.0-skylake/py-sympy-1\.11\.1-t5tove/lib/python3\
.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12\.3\.0-skylake/py-setuptools-68\.0\.0
-p3xbqx/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py
-pluggy-1\.0\.0-6su7kv/lib/python3\.11/site-packages:/gpfs/bbp\.cs
cs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.
3\.0-skylake/py-numpy-1\.26\.1-elr5pn/lib/python3\.11/site-package
s:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12\.3\.0-skylake/py-pytest-7\.3\.2-lrf2u3/lib/python3\.
11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_applications/install_gcc-12\.3\.0-skylake/py-pytest-cov-4\.0\.0-z
5nf6n/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/ninja-1
\.11\.1-nxtlgo/misc:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_externals/install_gcc-12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/m
isc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J
1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405
5a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-b
uild-455jgpo/bin/nrnivmodl -coreneuron .
4749 [ 55%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/new_calcium_channels.mod
4750 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/new_calcium_channel
s.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4
055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack
-build-455jgpo/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165
552933d5963dc6fd47c3be88641a/new_calcium_channels.mod
>> 4751 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4752 [NMODL] [warning] :: Can not inline function call to specify_invl
4753 [NMODL] [warning] :: Can not inline function call to specify_invl
4754 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build
-455jgpo/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d20
0c645a6b4cec93b5edfead
4755 cfiles =
4756 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5
ea/spack-build-455jgpo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/capmp.cpp
4757 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5
ea/spack-build-455jgpo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/expsynspine.cpp
...
5110 #pragma omp simd
5111 ^
5112 3 warnings generated.
5113 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyi
cr5ea/spack-build-455jgpo MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
5114 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/53c432f7080fe
7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
5115 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5116 make[3]: xcrun: No such file or directory
5117 Default NMODL flags:
5118 x86_64/corenrn/mod2c/expsyn.cpp:280:9: warning: loop not vectorize
d: the optimizer was unable to perform the requested transformatio
n; the transformation might be disabled or specified as part of an
unsupported transformation ordering [-Wpass-failed=transform-warn
ing]
5119 #pragma omp simd
5120 ^
5121 x86_64/corenrn/mod2c/expsyn.cpp:314:13: warning: loop not vectoriz
ed: the optimizer was unable to perform the requested transformati
on; the transformation might be disabled or specified as part of a
n unsupported transformation ordering [-Wpass-failed=transform-war
ning]
5122 #pragma omp simd
...
5125 #pragma omp simd
5126 ^
5127 x86_64/corenrn/mod2c/expsyn.cpp:392:9: warning: loop not vectorize
d: the optimizer was unable to perform the requested transformatio
n; the transformation might be disabled or specified as part of an
unsupported transformation ordering [-Wpass-failed=transform-warn
ing]
5128 #pragma omp simd
5129 ^
5130 4 warnings generated.
>> 5131 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5132 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5133 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5134 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5135 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5
ea/spack-build-455jgpo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/inatest.cpp
5136 [ 57%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/cacummb.mod
5137 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/cacummb.mod /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgp
o/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc
6fd47c3be88641a/cacummb.mod
...
5160 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5161 [ 58%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/halfgap.mod
5162 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/halfgap.mod /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgp
o/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc
6fd47c3be88641a/halfgap.mod
5163 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyi
cr5ea/spack-build-455jgpo MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
5164 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/14c92ceb412f1
b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
5165 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5166 make[3]: xcrun: No such file or directory
5167 Default NMODL flags:
>> 5168 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5169 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5170 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5171 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5172 [ 58%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/kadist.mod
5173 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kadist.mod /gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spac
k-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72
ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo
/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6
fd47c3be88641a/kadist.mod
5174 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
...
5665 #pragma omp simd
5666 ^
5667 x86_64/corenrn/mod2c/fi_stdp.cpp:491:9: warning: loop not vectoriz
ed: the optimizer was unable to perform the requested transformati
on; the transformation might be disabled or specified as part of a
n unsupported transformation ordering [-Wpass-failed=transform-war
ning]
5668 #pragma omp simd
5669 ^
5670 4 warnings generated.
>> 5671 make[3]: xcrun: No such file or directory
5672 Default NMODL flags:
5673 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/b62f97c7d3f6d9
05c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
5674 [INFO] MOD files built successfully for CoreNEURON
5675 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/b62f97c7d3f6d
905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/x86_64'
5676 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
5677 -> Compiling mod_func.cpp
5678 -> NMODL .././Gfluct3.mod
5679 -> NMODL .././hhderiv.mod
5680 -> NMODL .././hhkin.mod
>> 5681 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5682 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.771
7ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4
aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/f7f437ac4f0ea140e8
09f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/x86_64/./special" L
DFLAGS are: /usr/lib64/libcrypto.so
5683 Translating Gfluct3.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/b62f97c7d3f6d
905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/x86_64/Gfluct3
.cpp
5684 Thread Safe
5685 Translating hhderiv.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/b62f97c7d3f6d
905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/x86_64/hhderiv
.cpp
5686 Thread Safe
5687 Translating hhkin.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.
7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo
6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/b62f97c7d3f6d90
5c774d64e10128b3300792f8f757b926b965c058a4d6ee876/x86_64/hhkin.cpp
...
7267 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.771
7ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4
aq25lyicr5ea/spack-src//test/coreneuron/test_spikes.py /gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-b
uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1
75_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/te
st/coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.p
y
7268 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo'
7269 make -f test/CMakeFiles/copy-scripts-coreneuron_modtests-dataretu
rn_py_cpu.dir/build.make test/CMakeFiles/copy-scripts-coreneuron_m
odtests-datareturn_py_cpu.dir/build
7270 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo'
7271 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo'
7272 make -f test/CMakeFiles/copy-scripts-coreneuron_modtests-test_uni
ts_py_cpu.dir/build.make test/CMakeFiles/copy-scripts-coreneuron_m
odtests-test_units_py_cpu.dir/build
>> 7273 ampanmda.cpp:605:36: error: use of undeclared identifier '_globals
'
7274 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] ) ;
7275 ^
7276 ampanmda.cpp:49:55: note: expanded from macro '_threadargscomma_'
7277 #define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _n
t,
7278 ^
7279 1 error generated.
>> 7280 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 1
7281 make[3]: *** Waiting for unfinished jobs....
7282 [ 65%] Generating coreneuron_modtests/fast_imem_py_cpu/test/pytest
_coreneuron/test_fast_imem.py
7283 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.771
7ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4
aq25lyicr5ea/spack-src//test/pytest_coreneuron/test_fast_imem.py /
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13222
91/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a997
1c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-
455jgpo/test/coreneuron_modtests/fast_imem_py_cpu/test/pytest_core
neuron/test_fast_imem.py
7284 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo'
7285 [ 65%] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test
/coreneuron/test_spikes.py
7286 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.771
7ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4
aq25lyicr5ea/spack-src//test/coreneuron/test_spikes.py /gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-b
uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1
75_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/te
st/coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/tes
t_spikes.py
...
7293 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo'
7294 [ 65%] Built target copy-scripts-coreneuron_modtests-spikes_py_cpu
7295 make -f test/CMakeFiles/copy-scripts-coreneuron_modtests-test_net
move_py_cpu.dir/build.make test/CMakeFiles/copy-scripts-coreneuron
_modtests-test_netmove_py_cpu.dir/depend
7296 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavk
mo6n4aq25lyicr5ea/spack-build-455jgpo'
7297 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-bu
ild-455jgpo && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhz
avkmo6n4aq25lyicr5ea/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhza
vkmo6n4aq25lyicr5ea/spack-src/test /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neu
ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouu
mhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-
stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-
455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo/test /gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spac
k-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72
ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-455jgpo
/test/CMakeFiles/copy-scripts-coreneuron_modtests-test_netmove_py_
cpu.dir/DependInfo.cmake "--color="
7298 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/14c92ceb412f1b
4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64'
>> 7299 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_
nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068
9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd
a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2
7300 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo'
>> 7301 make[1]: *** [CMakeFiles/Makefile2:9814: test/external/olfactory-b
ulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec7
5b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2
7302 make[1]: *** Waiting for unfinished jobs....
7303 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo'
7304 [ 65%] Built target copy-scripts-coreneuron_modtests-fast_imem_py_
cpu
7305 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo'
7306 [ 65%] Built target copy-scripts-coreneuron_modtests-spikes_file_m
ode_py_cpu
7307 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo'
...
8313 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.771
7ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4
aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/3a24bd33c51ee30c68
f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64/./special" L
DFLAGS are:
8314 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo/test/nrnivmodl/3a24bd33c51ee3
0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64'
8315 Successfully created x86_64/special
8316 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo'
8317 [ 66%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1
46a37c165552933d5963dc6fd47c3be88641a
8318 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkm
o6n4aq25lyicr5ea/spack-build-455jgpo'
>> 8319 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322291/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-455jgpouumhzavkmo6n4aq25lyicr5ea/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r4i6n21: task 0: Exited with exit code 1
section_end:1718652384:step_script section_start:1718652384:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=132782 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1322291 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=132824 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1322291 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=132866 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1322291 responseStatus=201 Created token=glcbt-64
section_end:1718652386:upload_artifacts_on_failure section_start:1718652386:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718652387:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-nvhpc-acc-legacy.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718651644:resolve_secrets Resolving secrets
section_end:1718651644:resolve_secrets section_start:1718651644:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2305754466, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 217466, build ref , job ID 1322292
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1322292_PROD_P2160_CP14_C31
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2255679
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322292_PROD_P2160_CP14_C31 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --ntasks=2 --jobid=2255679 --cpus-per-task=8 --mem=160G
section_end:1718651647:prepare_executor section_start:1718651647:prepare_script Preparing environment
Using git from spack modules
Running on r4i6n22 via bbpv1.epfl.ch...
section_end:1718651650:prepare_script section_start:1718651650:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718651652:get_sources section_start:1718651652:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=121876 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718651659:restore_cache section_start:1718651659:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1322289)...
Runtime platform  arch=amd64 os=linux pid=122002 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1322289 responseStatus=200 OK token=glcbt-64
section_end:1718651660:download_artifacts section_start:1718651660:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466/J1322292_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/53hy2ex7xntc24cnbuojh6rrc3l2auap
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255679/ccache
Config file: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255679/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Mon Jun 17 21:14:33 2024
Local storage:
Cache size (GB): 0.45 / 0.51 (88.54%)
Files: 10450
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/53hy2ex7xntc24cnbuojh6rrc3l2auap
Concretized
--------------------------------
- 3fiddzu neuron@git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g [38/50]
==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g
Stage: 2.49s. Cmake: 3.67s. Build: 1.15s. Install: 0.08s. Post-install: 0.10s. Total: 7.63s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
==> Installing neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-3fiddzutebdckptfvn5jemnuutcdhl3h [50/50]
==> No binary for neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-3fiddzutebdckptfvn5jemnuutcdhl3h found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
24 errors found in build log:
2875 [ 29%] Built target coreneuron-for-tests
2876 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3
c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnu
utcdhl3h/spack-build-3fiddzu/bin/nrnivmodl-core -b STATIC -m /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/i
nstall_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46
770aa12665_develop-53hy2e/bin/nmodl -n internal -p 4 .
2877 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdc
kptfvn5jemnuutcdhl3h/spack-build-3fiddzu/bin', compiling default o
nes only!
2878 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc
dhl3h/spack-build-3fiddzu MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software
/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d
46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
2879 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt
fvn5jemnuutcdhl3h/spack-build-3fiddzu/bin'
2880 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2881 make[3]: xcrun: No such file or directory
2882 Default NMODL flags:
>> 2883 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2884 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2885 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2886 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2887 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
2888 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM
ath.h", line 984: warning: integer conversion resulted in a change
of sign [integer_sign_change]
2889 const __m128i sign_mask = _mm_set1_epi16(static_cast<numext::u
int16_t>(0x8000));
...
3818 INFO:root:RX3D is DISABLED
3819 "./unitstest.mod" "./version_macros.mod"
3820
3821 Creating 'x86_64' directory for .o files.
3822
3823 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver
sion_macros.o
>> 3824 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s
ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu
ptools.installer and fetch_build_eggs are deprecated.
3825 !!
3826
3827 **********************************************************
**********************
3828 Requirements should be satisfied by a PEP 517 installer.
3829 If you are using pip, you can try `pip install --use-pep51
7`.
3830 **********************************************************
**********************
...
3832 !!
3833 dist.fetch_build_eggs(dist.setup_requires)
3834 WARNING:root:WARNING: The wheel package is not available.
3835 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc
dhl3h/spack-build-3fiddzu MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
3836 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt
fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/c448d279dd3b9
1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
3837 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3838 make[3]: xcrun: No such file or directory
3839 Default NMODL flags:
>> 3840 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3841 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3842 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3843 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3844 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
3845 [ 42%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/oc
kludge.cpp.o
3846 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322287/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jem
nuutcdhl3h/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdc
kptfvn5jemnuutcdhl3h/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrniv -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack
-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72a
d175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13
22292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a
9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src
/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
7466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102
ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/s
pack-build-3fiddzu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba
3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemn
uutcdhl3h/spack-build-3fiddzu/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/src/nrnoc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build
-3fiddzu/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5
jemnuutcdhl3h/spack-build-3fiddzu/src/oc -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-s
tage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3
fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/src/parallel -
I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J132
2292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9
971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-buil
d-3fiddzu/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5
jemnuutcdhl3h/spack-build-3fiddzu/src/sundials/shared -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/gn
u -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J
1322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405
5a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-s
rc/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcd
hl3h/spack-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdck
ptfvn5jemnuutcdhl3h/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/scopmath -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/spar
se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/
J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40
55a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-
src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c
389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuu
tcdhl3h/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuro
n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebd
ckptfvn5jemnuutcdhl3h/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-bu
ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17
5_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/sundials/
ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4
055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack
-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git.
7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfv
n5jemnuutcdhl3h/spack-build-3fiddzu/src/nrniv/oc_generated -I/gpfs
/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
2.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-buil
d/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_
develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/ivos -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/
spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5
9c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/n
rnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl
3h/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neu
ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzute
bdckptfvn5jemnuutcdhl3h/spack-src/src/nrnpython/../nrnoc -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrnp
ython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcd
hl3h/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stag
e-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fid
dzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrnpython/../nrnmpi -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13222
92/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a997
1c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/sr
c/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st
age_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/incl
ude/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git.771
7ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5j
emnuutcdhl3h/spack-src/external/eigen -tp haswell -g -O1 -fno-omit
-frame-pointer --c++17 --diag_suppress=1,47,111,128,170,174,177,1
86,541,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nr
niv.dir/__/oc/ockludge.cpp.o -MF CMakeFiles/nrniv.dir/__/oc/ocklud
ge.cpp.o.d -o CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o -c /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/oc/o
ckludge.cpp
...
4528 [ 44%] Linking CXX executable ../../bin/test/netcon_cpp
4529 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/api && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin
/cmake -E cmake_link_script CMakeFiles/netcon_cpp.dir/link.txt --v
erbose=1
4530 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
287/spack/lib/spack/env/nvhpc/nvc++ -tp haswell -g -O1 -fno-omit-f
rame-pointer -noswitcherror -rdynamic CMakeFiles/netcon_cpp.dir/n
etcon.cpp.o -o ../../bin/test/netcon_cpp -L/gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hp
e-mpi-2.27.p1.hmpt-6rr256/lib -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f
iddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/lib:/gpfs/bbp.c
scs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-
skylake/python-3.11.6-bj4i6m/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.
2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_appli
cations/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib:/gpfs/bb
p.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3
.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib -ldl ../../lib/libnrniv
.so ../../lib/libnrngnu.a ../../lib/libsparse13.a /gpfs/bbp.cscs.c
h/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyla
ke/python-3.11.6-bj4i6m/lib/libpython3.11.so /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake
/readline-8.2-pdugg7/lib/libreadline.so /gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncur
ses-6.4-6kdbhv/lib/libcurses.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/202
4-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-
6kdbhv/lib/libform.so -lpthread -lmpi -ldl
4531 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc
dhl3h/spack-build-3fiddzu MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4532 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt
fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
4533 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4534 make[3]: xcrun: No such file or directory
4535 Default NMODL flags:
>> 4536 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4537 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4538 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4539 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu'
4540 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <
argument> definition in NetReceiveBlock
4541 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <
argument> definition in NetReceiveBlock
4542 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <
argument> definition in NetReceiveBlock
...
4693 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/red
uced_dentate//mechanisms/holdingi.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-
neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddz
utebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdi
ngi.mod
4694 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc
dhl3h/spack-build-3fiddzu MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4695 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt
fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
4696 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4697 [ 45%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33
00792f8f757b926b965c058a4d6ee876/vecevent.mod
4698 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-
3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/testcor
enrn//mod/vecevent.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717
ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5je
mnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/b62f97c7d3f6d905c77
4d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
>> 4699 make[3]: xcrun: No such file or directory
4700 Default NMODL flags:
>> 4701 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4702 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/hyperde3.mod
4703 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/red
uced_dentate//mechanisms/hyperde3.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-
neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddz
utebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyper
de3.mod
4704 [ 45%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33
00792f8f757b926b965c058a4d6ee876/Gfluct3.mod
4705 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-
3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/testcor
enrn//mod/Gfluct3.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jem
nuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/b62f97c7d3f6d905c774
d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
4706 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4707 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
...
4754 "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod"mak
e[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5
jemnuutcdhl3h/spack-build-3fiddzu'
4755 make -f test/external/tqperf/CMakeFiles/NRN_TEST_nrnivmodl_f7f437
ac4f0ea140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c.dir/bui
ld.make test/external/tqperf/CMakeFiles/NRN_TEST_nrnivmodl_f7f437a
c4f0ea140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c.dir/buil
d
4756 "./SH_KIn.mod"make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-
stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-
3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu'
4757 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc
dhl3h/spack-build-3fiddzu MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4758 "./SH_na8st.mod"make[3]: Entering directory '/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivm
odl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee8
76'
4759 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4760 "./bgka.mod" "./ccanl.mod"make[3]: xcrun: No such file or director
y
4761 Default NMODL flags:
4762 "./ggap.mod"[ 47%] Generating ../../nrnivmodl/f7f437ac4f0ea140e80
9f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/invlfirestats.mod
4763 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/tqperf && /gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.
7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stag
e-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fid
dzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/tqperf//modx
/invlfirestats.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c
389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuu
tcdhl3h/spack-build-3fiddzu/test/nrnivmodl/f7f437ac4f0ea140e809f1b
dd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/invlfirestats.mod
>> 4764 "./gskch.mod" "./holdingi.mod"diff: x86_64/corenrn/mod2c/_mod_fun
c.cpp: No such file or directory
4765 "./hyperde3.mod"[NMODL] [warning] :: Can not inline function call
to mynormrand
4766 [NMODL] [warning] :: Can not inline function call to mynormrand
4767 [NMODL] [warning] :: Can not inline function call to mynormrand
4768 [NMODL] [warning] :: Can not inline function call to mynormrand
4769 "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca
.mod" "./spines.mod"[ 47%] Generating ../../nrnivmodl/f7f437ac4f0e
a140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/invlfire.mod
4770 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/tqperf && /gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.
7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stag
e-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fid
dzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/tqperf//mod/
invlfire.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f35
102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3
h/spack-build-3fiddzu/test/nrnivmodl/f7f437ac4f0ea140e809f1bdd7f7d
03201e354b9a2041597f8faaf7fb7aebb7c/invlfire.mod
...
4788
4789 MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o
4790 MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o
./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_s
AHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./cc
anl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./ic
onc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.
o
4791 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc
dhl3h/spack-build-3fiddzu INCFLAGS=-I/usr/include LINKFLAGS=/usr/l
ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC
NRN_PRCELLSTATE=0
4792 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt
fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/f7f437ac4f0ea
140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c'
4793 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4794 make[3]: xcrun: No such file or directory
4795 Default NMODL flags:
>> 4796 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4797 [NMODL] [warning] :: Can not inline function call to specify_invl
4798 [NMODL] [warning] :: Can not inline function call to specify_invl
4799 [NMODL] [warning] :: Can not inline function call to specify_invl
4800 [NMODL] [warning] :: Can not inline function call to specify_invl
4801 [NMODL] [warning] :: Can not inline function call to specify_invl
4802 [NMODL] [warning] :: Can not inline function call to specify_invl
...
4804 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4805 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4806 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
4807 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc
dhl3h/spack-build-3fiddzu MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4808 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt
fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/53c432f7080fe
7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
4809 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4810 make[3]: xcrun: No such file or directory
4811 Default NMODL flags:
4812 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/ae2c9b73c9a624
bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/x86_64/./libnrn
mech.so"
>> 4813 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4814 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4815 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4816 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4817 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4818 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4819 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
...
4988 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl
3h/spack-build-3fiddzu/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/inatest.cpp
4989 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc
dhl3h/spack-build-3fiddzu MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4990 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt
fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/14c92ceb412f1
b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
4991 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4992 [ 48%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/na3n.mod
4993 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/na3n.mod /gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/t
est/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd
47c3be88641a/na3n.mod
>> 4994 make[3]: xcrun: No such file or directory
4995 Default NMODL flags:
>> 4996 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4997 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
4998 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
4999 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5000 [ 49%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/naxn.mod
5001 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/naxn.mod /gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/t
est/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd
47c3be88641a/naxn.mod
5002 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
...
5039 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/a9c54b18e4b543
51cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./libnrn
mech.so"
5040 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git.771
7ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5j
emnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/a9c54b18e4b54351cb
4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./special" L
DFLAGS are:
5041 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build
-3fiddzu/share/nrn/nrnmain.cpp:
5042 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc
dhl3h/spack-build-3fiddzu MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5043 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt
fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/3a24bd33c51ee
30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a'
5044 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5045 make[3]: xcrun: No such file or directory
5046 Default NMODL flags:
>> 5047 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5048 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5049 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5050 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5051 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5052 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5053 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
...
6144 [ 53%] Generating ../../external_ringtest_nrn/optim_node_order/rin
gtest.py
6145 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f
iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest//
ringtest.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f351
02ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h
/spack-build-3fiddzu/test/external_ringtest_nrn/optim_node_order/r
ingtest.py
6146 [ 53%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli
ne_saverestore/commonutils.py
6147 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f
iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest//
commonutils.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f
35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdh
l3h/spack-build-3fiddzu/test/external_ringtest/coreneuron_cpu_mpi_
offline_saverestore/commonutils.py
6148 [ 53%] Generating ../../external_ringtest/coreneuron_cpu_mpi/commo
nutils.py
6149 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f
iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest//
commonutils.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f
35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdh
l3h/spack-build-3fiddzu/test/external_ringtest/coreneuron_cpu_mpi/
commonutils.py
>> 6150 "ampanmda.cpp", line 605: error: identifier "_globals" is undefine
d
6151 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] )
;
6152 ^
6153
6154 1 error detected in the compilation of "ampanmda.cpp".
>> 6155 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 2
6156 make[3]: *** Waiting for unfinished jobs....
6157 [ 53%] Generating ../../external_ringtest_nrn/optim_node_order/rin
guniform.py
6158 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f
iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest//
ringuniform.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f
35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdh
l3h/spack-build-3fiddzu/test/external_ringtest_nrn/optim_node_orde
r/ringuniform.py
6159 [ 53%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli
ne_saverestore/ranparm.py
6160 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f
iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest//
ranparm.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
17466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f3510
2ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/
spack-build-3fiddzu/test/external_ringtest/coreneuron_cpu_mpi_offl
ine_saverestore/ranparm.py
6161 [ 53%] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranpa
rm.py
...
6184 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f
iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest//
celluniform.hoc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcd
hl3h/spack-build-3fiddzu/test/external_ringtest_nrn/optim_node_ord
er/celluniform.hoc
6185 [ 54%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli
ne_saverestore/settings.py
6186 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f
iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest//
settings.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f351
02ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h
/spack-build-3fiddzu/test/external_ringtest/coreneuron_cpu_mpi_off
line_saverestore/settings.py
6187 [ 54%] Generating ../../external_ringtest/coreneuron_cpu_mpi/setti
ngs.py
6188 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f
iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest//
settings.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f351
02ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h
/spack-build-3fiddzu/test/external_ringtest/coreneuron_cpu_mpi/set
tings.py
6189 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/14c92ceb412f1b
4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64'
>> 6190 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_
nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068
9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd
a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2
6191 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu'
>> 6192 make[1]: *** [CMakeFiles/Makefile2:11803: test/external/olfactory-
bulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec
75b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2
6193 make[1]: *** Waiting for unfinished jobs....
6194 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu'
6195 [ 54%] Generating ../../external_ringtest/coreneuron_cpu_mpi/test_
optimize_node_order.py
6196 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu
ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f
iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest//
test_optimize_node_order.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/test/external_ringtest/corene
uron_cpu_mpi/test_optimize_node_order.py
6197 [ 54%] Built target copy-scripts-external_ringtest_nrn-optim_node_
order
6198 [ 54%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli
ne_saverestore/test_optimize_node_order.py
...
6606 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
6607 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/3a24bd33c51ee3
0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64'
6608 Successfully created x86_64/special
6609 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu'
6610 [ 55%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1
46a37c165552933d5963dc6fd47c3be88641a
6611 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf
vn5jemnuutcdhl3h/spack-build-3fiddzu'
>> 6612 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322292/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r4i6n22: task 0: Exited with exit code 1
section_end:1718652987:step_script section_start:1718652987:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=141749 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1322292 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=141791 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1322292 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=141833 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1322292 responseStatus=201 Created token=glcbt-64
section_end:1718652988:upload_artifacts_on_failure section_start:1718652988:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718652989:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-nvhpc-acc-shared.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718651645:resolve_secrets Resolving secrets
section_end:1718651645:resolve_secrets section_start:1718651645:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1345923375, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 217466, build ref , job ID 1322293
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1322293_PROD_P2160_CP15_C32
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2255680
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322293_PROD_P2160_CP15_C32 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --ntasks=2 --jobid=2255680 --cpus-per-task=8 --mem=160G
section_end:1718651647:prepare_executor section_start:1718651647:prepare_script Preparing environment
Using git from spack modules
Running on r4i6n23 via bbpv1.epfl.ch...
section_end:1718651651:prepare_script section_start:1718651651:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718651652:get_sources section_start:1718651652:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=119222 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718651659:restore_cache section_start:1718651659:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1322289)...
Runtime platform  arch=amd64 os=linux pid=119349 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1322289 responseStatus=200 OK token=glcbt-64
section_end:1718651660:download_artifacts section_start:1718651660:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466/J1322293_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/53hy2ex7xntc24cnbuojh6rrc3l2auap
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255680/ccache
Config file: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255680/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Mon Jun 17 21:14:35 2024
Local storage:
Cache size (GB): 0.46 / 0.51 (90.34%)
Files: 10325
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/53hy2ex7xntc24cnbuojh6rrc3l2auap
Concretized
--------------------------------
- gbz4ovq neuron@git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
==> Installing neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd [50/50]
==> No binary for neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
24 errors found in build log:
2878 [ 26%] Built target coreneuron-for-tests
2879 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3
c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj
534a6ltd/spack-build-gbz4ovq/bin/nrnivmodl-core -b SHARED -m /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/i
nstall_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46
770aa12665_develop-53hy2e/bin/nmodl -n internal -p 4 .
2880 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2
aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq/bin', compiling default o
nes only!
2881 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534
a6ltd/spack-build-gbz4ovq MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software
/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d
46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
2882 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-build-gbz4ovq/bin'
2883 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2884 make[3]: xcrun: No such file or directory
2885 Default NMODL flags:
>> 2886 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2887 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2888 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2889 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2890 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
2891 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM
ath.h", line 984: warning: integer conversion resulted in a change
of sign [integer_sign_change]
2892 const __m128i sign_mask = _mm_set1_epi16(static_cast<numext::u
int16_t>(0x8000));
...
3823
3824 Creating 'x86_64' directory for .o files.
3825
3826 INFO:root:Extension common compile flags defaultdict(<class 'list'
>, {'library_dirs': ['/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzz
yj534a6ltd/spack-build-gbz4ovq/lib'], 'libraries': ['nrniv'], 'lan
guage': 'c++'})
3827 INFO:root:RX3D is DISABLED
3828 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver
sion_macros.o
>> 3829 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s
ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu
ptools.installer and fetch_build_eggs are deprecated.
3830 !!
3831
3832 **********************************************************
**********************
3833 Requirements should be satisfied by a PEP 517 installer.
3834 If you are using pip, you can try `pip install --use-pep51
7`.
3835 **********************************************************
**********************
...
3837 !!
3838 dist.fetch_build_eggs(dist.setup_requires)
3839 WARNING:root:WARNING: The wheel package is not available.
3840 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534
a6ltd/spack-build-gbz4ovq MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
3841 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/c448d279dd3b9
1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
3842 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3843 make[3]: xcrun: No such file or directory
3844 Default NMODL flags:
>> 3845 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3846 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3847 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3848 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3849 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
3850 [ 38%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/oc
kludge.cpp.o
3851 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322287/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzz
yj534a6ltd/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2
aum5ug6nzzyj534a6ltd/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/nrniv -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack
-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72a
d175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13
22293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a
9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src
/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
7466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102
ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/s
pack-build-gbz4ovq -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba
3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzy
j534a6ltd/spack-build-gbz4ovq/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq/src/nrnoc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build
-gbz4ovq/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6
nzzyj534a6ltd/spack-build-gbz4ovq/src/oc -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-s
tage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-g
bz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq/src/parallel -
I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J132
2293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9
971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-buil
d-gbz4ovq/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6
nzzyj534a6ltd/spack-build-gbz4ovq/src/sundials/shared -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/gn
u -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J
1322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405
5a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-s
rc/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a
6ltd/spack-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2a
um5ug6nzzyj534a6ltd/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack
-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop
-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/scopmath -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/spar
se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/
J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40
55a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-
src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c
389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj5
34a6ltd/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuro
n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j
2aum5ug6nzzyj534a6ltd/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-bu
ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17
5_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/sundials/
ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4
055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack
-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.
7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5u
g6nzzyj534a6ltd/spack-build-gbz4ovq/src/nrniv/oc_generated -I/gpfs
/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
2.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-buil
d/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_
develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/ivos -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/
spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5
9c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/n
rnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6l
td/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neu
ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp
5j2aum5ug6nzzyj534a6ltd/spack-src/src/nrnpython/../nrnoc -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/nrnp
ython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a
6ltd/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stag
e-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4
ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/nrnpython/../nrnmpi -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13222
93/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a997
1c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/sr
c/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st
age_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/incl
ude/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.771
7ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6n
zzyj534a6ltd/spack-src/external/eigen -tp haswell -g -O1 -fno-omit
-frame-pointer --c++17 --diag_suppress=1,47,111,128,170,174,177,1
86,541,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nr
niv.dir/__/oc/ockludge.cpp.o -MF CMakeFiles/nrniv.dir/__/oc/ocklud
ge.cpp.o.d -o CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o -c /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/oc/o
ckludge.cpp
...
4530 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test/api && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin
/cmake -E cmake_link_script CMakeFiles/hh_sim_cpp.dir/link.txt --v
erbose=1
4531 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
287/spack/lib/spack/env/nvhpc/nvc++ -tp haswell -g -O1 -fno-omit-f
rame-pointer -noswitcherror -rdynamic CMakeFiles/hh_sim_cpp.dir/h
h_sim.cpp.o -o ../../bin/test/hh_sim_cpp -L/gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hp
e-mpi-2.27.p1.hmpt-6rr256/lib -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gb
z4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq/lib:/gpfs/bbp.c
scs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-
skylake/python-3.11.6-bj4i6m/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.
2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_appli
cations/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib:/gpfs/bb
p.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3
.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib -ldl ../../lib/libnrniv
.so ../../lib/libnrngnu.a ../../lib/libsparse13.a /gpfs/bbp.cscs.c
h/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyla
ke/python-3.11.6-bj4i6m/lib/libpython3.11.so /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake
/readline-8.2-pdugg7/lib/libreadline.so /gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncur
ses-6.4-6kdbhv/lib/libcurses.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/202
4-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-
6kdbhv/lib/libform.so -lpthread -lmpi -ldl
4532 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq'
4533 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534
a6ltd/spack-build-gbz4ovq MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
4534 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
4535 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4536 make[3]: xcrun: No such file or directory
4537 Default NMODL flags:
4538 [ 41%] Built target hh_sim_cpp
>> 4539 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4540 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4541 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4542 [ 41%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
ts/utils/enumerate.cpp.o
4543 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P217466/J1322287/spack/lib/spack/env/nvhpc/nvc++ -DCORENRN_
BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-
build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad
175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/ivoc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/s
rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6l
td/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6
nzzyj534a6ltd/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-ne
uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqf
p5j2aum5ug6nzzyj534a6ltd/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-
stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-
gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-b
uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1
75_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq/sr
c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f35
102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6lt
d/spack-build-gbz4ovq/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neur
on-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5
j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq/src/nrnpython -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ov
q/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
17466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f3510
2ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/
spack-build-gbz4ovq/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neu
ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp
5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq/src/sundials -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ov
q/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.771
7ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6n
zzyj534a6ltd/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-
neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ov
qfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.c
h/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/
spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_de
velop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/nrnpython -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13222
93/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a997
1c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/sr
c/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f35
102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6lt
d/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.
7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5u
g6nzzyj534a6ltd/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage
-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4o
vqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/sparse13 -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-bui
ld/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175
_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/sundials -
I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J132
2293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9
971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/
src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzz
yj534a6ltd/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stag
e-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4
ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/sundials/shared -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/extern
al/catch2/src/catch2/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.7
717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug
6nzzyj534a6ltd/spack-build-gbz4ovq/external/catch2/generated-inclu
des -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4
055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack
-build-gbz4ovq/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi
-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2a
um5ug6nzzyj534a6ltd/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-sta
ge-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz
4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/nrnpython/.. -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/nrnp
ython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6l
td/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-
neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ov
qfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/nrnpython/../ivoc -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/nr
npython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c
389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj5
34a6ltd/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-
stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-
gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/src/nrnpython/../ivos -
I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install
_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python3.11 -isyst
em /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-sr
c/external/eigen -tp haswell -g -O1 -fno-omit-frame-pointer --c++
17 --diag_suppress=1,47,111,128,170,174,177,186,541,550,816,2465 -
noswitcherror -MD -MT test/CMakeFiles/testneuron.dir/unit_tests/ut
ils/enumerate.cpp.o -MF CMakeFiles/testneuron.dir/unit_tests/utils
/enumerate.cpp.o.d -o CMakeFiles/testneuron.dir/unit_tests/utils/e
numerate.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
oj12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c3
89f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj53
4a6ltd/spack-src/test/unit_tests/utils/enumerate.cpp
4544 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <
argument> definition in NetReceiveBlock
4545 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <
argument> definition in NetReceiveBlock
...
4671 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/external/tests/red
uced_dentate//mechanisms/DGC_sAHP.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-
neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ov
qfp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_s
AHP.mod
4672 [ 43%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
4673 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/external/tests/red
uced_dentate//mechanisms/Gfluct3.mod /gpfs/bbp.cscs.ch/ssd/gitlab_
map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-n
euron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovq
fp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/53c43
2f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct
3.mod
4674 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534
a6ltd/spack-build-gbz4ovq MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
4675 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
4676 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4677 make[3]: xcrun: No such file or directory
4678 Default NMODL flags:
4679 [ 43%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/LcaMig.mod
4680 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/external/tests/red
uced_dentate//mechanisms/LcaMig.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-ne
uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqf
p5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.
mod
>> 4681 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4682 [ 43%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
4683 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/external/tests/red
uced_dentate//mechanisms/SH_KIn.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-ne
uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqf
p5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.
mod
4684 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4685 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4686 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4687 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /gpfs/bbp
.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255680/pgcudafatiphGyDmwky
Ly.o: missing .note.GNU-stack section implies executable stack
...
4809
4810 Creating 'x86_64' directory for .o files.
4811
4812 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534
a6ltd/spack-build-gbz4ovq MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
4813 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/b62f97c7d3f6d
905c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
4814 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4815 make[3]: xcrun: No such file or directory
4816 Default NMODL flags:
>> 4817 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4818 [NMODL] [warning] :: Can not inline function call to mynormrand
4819 [NMODL] [warning] :: Can not inline function call to mynormrand
4820 [NMODL] [warning] :: Can not inline function call to mynormrand
4821 [NMODL] [warning] :: Can not inline function call to mynormrand
4822 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534
a6ltd/spack-build-gbz4ovq INCFLAGS=-I/usr/include LINKFLAGS=/usr/l
ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=SHARED
NRN_PRCELLSTATE=0
4823 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/f7f437ac4f0ea
140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c'
4824 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4825 make[3]: xcrun: No such file or directory
4826 Default NMODL flags:
>> 4827 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4828 [NMODL] [warning] :: Can not inline function call to specify_invl
4829 [NMODL] [warning] :: Can not inline function call to specify_invl
4830 [NMODL] [warning] :: Can not inline function call to specify_invl
4831 [NMODL] [warning] :: Can not inline function call to specify_invl
4832 [NMODL] [warning] :: Can not inline function call to specify_invl
4833 [NMODL] [warning] :: Can not inline function call to specify_invl
...
4848 make -f test/external/channel-benchmark/CMakeFiles/NRN_TEST_nrniv
modl_3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47c3be886
41a.dir/build.make test/external/channel-benchmark/CMakeFiles/NRN_
TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6f
d47c3be88641a.dir/depend
4849 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-build-gbz4ovq'
4850 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2
aum5ug6nzzyj534a6ltd/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2a
um5ug6nzzyj534a6ltd/spack-src/test/external/channel-benchmark /gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/
spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5
9c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz
4ovq /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/
J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40
55a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-
build-gbz4ovq/test/external/channel-benchmark /gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/extern
al/channel-benchmark/CMakeFiles/NRN_TEST_nrnivmodl_3a24bd33c51ee30
c68f71d610b146a37c165552933d5963dc6fd47c3be88641a.dir/DependInfo.c
make "--color="
4851 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534
a6ltd/spack-build-gbz4ovq MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
4852 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/53c432f7080fe
7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
4853 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4854 make[3]: xcrun: No such file or directory
4855 Default NMODL flags:
4856 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq'
4857 make -f test/external/channel-benchmark/CMakeFiles/NRN_TEST_nrniv
modl_3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47c3be886
41a.dir/build.make test/external/channel-benchmark/CMakeFiles/NRN_
TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6f
d47c3be88641a.dir/build
4858 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-build-gbz4ovq'
>> 4859 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4860 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4861 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4862 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4863 [ 45%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/new_calcium_channels.mod
4864 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/new_calcium_channel
s.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4
055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack
-build-gbz4ovq/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165
552933d5963dc6fd47c3be88641a/new_calcium_channels.mod
4865 [ 45%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/Ca.mod
...
5043 Creating 'x86_64' directory for .o files.
5044
5045 MODOBJS= ./Gfluct.o ./ThreshDetect.o ./ampanmda.o ./distrt.o ./fi.
o ./fi_stdp.o ./gap.o ./kamt.o ./kdrmt.o ./ks.o ./naxn.o ./orn.o .
/ostimhelper.o
5046 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534
a6ltd/spack-build-gbz4ovq MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
5047 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/3a24bd33c51ee
30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a'
5048 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5049 make[3]: xcrun: No such file or directory
5050 Default NMODL flags:
>> 5051 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5052 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /gpfs/bbp
.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255680/pgcudafatTlPGhVXoxn
fE.o: missing .note.GNU-stack section implies executable stack
5053 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5054 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534
a6ltd/spack-build-gbz4ovq MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
5055 => Binary creating x86_64/special-core
5056 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/14c92ceb412f1
b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
5057 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5058 make[3]: xcrun: No such file or directory
5059 Default NMODL flags:
>> 5060 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5061 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5062 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5063 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5064 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build
-gbz4ovq/share/coreneuron/coreneuron.cpp:
5065 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5066 [NMODL] [warning] :: SYMTAB :: w [Argument] in NetReceiveBlock sha
dows <assigned_definition> definition in NMODL_GLOBAL
...
6432 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2
aum5ug6nzzyj534a6ltd/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2a
um5ug6nzzyj534a6ltd/spack-src/test/external/ringtest /gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-bui
ld/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175
_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz4ovq /gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/
spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5
9c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build-gbz
4ovq/test/external/ringtest /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/external/ringtest/CMakeF
iles/copy-scripts-external_ringtest-coreneuron_gpu_mpi_python.dir/
DependInfo.cmake "--color="
6433 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq'
6434 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq'
6435 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq'
6436 make -f test/external/ringtest/CMakeFiles/copy-scripts-external_r
ingtest-coreneuron_gpu_mpi_python.dir/build.make test/external/rin
gtest/CMakeFiles/copy-scripts-external_ringtest-coreneuron_gpu_mpi
_python.dir/build
6437 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum
5ug6nzzyj534a6ltd/spack-build-gbz4ovq'
>> 6438 "ampanmda.cpp", line 605: error: identifier "_globals" is undefine
d
6439 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] )
;
6440 ^
6441
6442 1 error detected in the compilation of "ampanmda.cpp".
>> 6443 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 2
6444 make[3]: *** Waiting for unfinished jobs....
6445 [ 56%] Built target copy-scripts-external_ringtest-coreneuron_gpu_
mpi_offline_saverestore
6446 [ 56%] Built target copy-scripts-external_ringtest-coreneuron_gpu_
mpi
6447 [ 56%] Generating ../../external_ringtest/coreneuron_gpu_mpi_pytho
n/args.py
6448 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gb
z4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/external/tests/ringtest//
args.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174
66/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd
f4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spa
ck-build-gbz4ovq/test/external_ringtest/coreneuron_gpu_mpi_python/
args.py
6449 [ 56%] Generating ../../external_ringtest/coreneuron_gpu_mpi_pytho
n/commonutils.py
...
6470 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gb
z4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/external/tests/ringtest//
args.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174
66/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd
f4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spa
ck-build-gbz4ovq/test/external_ringtest/coreneuron_gpu_mpi_threads
/args.py
6471 [ 57%] Generating ../../external_ringtest/coreneuron_gpu_mpi_pytho
n/ringtest.py
6472 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gb
z4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/external/tests/ringtest//
ringtest.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f351
02ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd
/spack-build-gbz4ovq/test/external_ringtest/coreneuron_gpu_mpi_pyt
hon/ringtest.py
6473 [ 57%] Generating ../../external_ringtest/coreneuron_gpu_mpi_offli
ne/commonutils.py
6474 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gb
z4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/external/tests/ringtest//
commonutils.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f
35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6
ltd/spack-build-gbz4ovq/test/external_ringtest/coreneuron_gpu_mpi_
offline/commonutils.py
6475 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/14c92ceb412f1b
4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64'
>> 6476 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_
nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068
9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd
a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2
6477 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq'
>> 6478 make[1]: *** [CMakeFiles/Makefile2:11971: test/external/olfactory-
bulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec
75b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2
6479 make[1]: *** Waiting for unfinished jobs....
6480 [ 57%] Generating ../../external_ringtest/coreneuron_gpu_mpi_threa
ds/commonutils.py
6481 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gb
z4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/external/tests/ringtest//
commonutils.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f
35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6
ltd/spack-build-gbz4ovq/test/external_ringtest/coreneuron_gpu_mpi_
threads/commonutils.py
6482 [ 57%] Generating ../../external_ringtest/coreneuron_gpu_mpi_pytho
n/ringuniform.py
6483 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-bu
ild-gbz4ovq/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gb
z4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-src/external/tests/ringtest//
ringuniform.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f
35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6
ltd/spack-build-gbz4ovq/test/external_ringtest/coreneuron_gpu_mpi_
python/ringuniform.py
6484 [ 57%] Generating ../../external_ringtest/coreneuron_gpu_mpi_offli
ne/ranparm.py
...
6931 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
6932 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq/test/nrnivmodl/3a24bd33c51ee3
0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64'
6933 Successfully created x86_64/special
6934 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq'
6935 [ 57%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1
46a37c165552933d5963dc6fd47c3be88641a
6936 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5
ug6nzzyj534a6ltd/spack-build-gbz4ovq'
>> 6937 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322293/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-gbz4ovqfp5j2aum5ug6nzzyj534a6ltd/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r4i6n23: task 0: Exited with exit code 1
section_end:1718653047:step_script section_start:1718653047:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=140380 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1322293 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=140422 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1322293 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=140466 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1322293 responseStatus=201 Created token=glcbt-64
section_end:1718653049:upload_artifacts_on_failure section_start:1718653049:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718653050:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-nvhpc-omp-legacy.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718651645:resolve_secrets Resolving secrets
section_end:1718651645:resolve_secrets section_start:1718651645:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1521089615, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 217466, build ref , job ID 1322294
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1322294_PROD_P2160_CP16_C33
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2255681
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322294_PROD_P2160_CP16_C33 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --ntasks=2 --jobid=2255681 --cpus-per-task=8 --mem=160G
section_end:1718651647:prepare_executor section_start:1718651647:prepare_script Preparing environment
Using git from spack modules
Running on r4i6n24 via bbpv1.epfl.ch...
section_end:1718651651:prepare_script section_start:1718651651:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718651652:get_sources section_start:1718651652:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=93311 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718651659:restore_cache section_start:1718651659:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1322289)...
Runtime platform  arch=amd64 os=linux pid=93458 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1322289 responseStatus=200 OK token=glcbt-64
section_end:1718651660:download_artifacts section_start:1718651660:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466/J1322294_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/53hy2ex7xntc24cnbuojh6rrc3l2auap
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255681/ccache
Config file: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255681/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Mon Jun 17 21:14:34 2024
Local storage:
Cache size (GB): 0.46 / 0.51 (90.55%)
Files: 10962
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/53hy2ex7xntc24cnbuojh6rrc3l2auap
- ^caliper+cuda cuda_arch=70
Concretized
--------------------------------
- nbrt2mt neuron@git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
- vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e
==> Installing caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 [54/55]
==> No binary for caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 found: installing from source
==> Fetching https://github.com/LLNL/Caliper/archive/v2.11.0.tar.gz
==> No patches needed for caliper
==> caliper: Executing phase: 'cmake'
==> caliper: Executing phase: 'build'
==> caliper: Executing phase: 'install'
==> caliper: Successfully installed caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2
Stage: 2.49s. Cmake: 7.76s. Build: 6.93s. Install: 0.96s. Post-install: 0.16s. Total: 18.61s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
==> Installing neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-nbrt2mtvkibls5g6wll3eufcv5damkqi [55/55]
==> No binary for neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-nbrt2mtvkibls5g6wll3eufcv5damkqi found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
24 errors found in build log:
2878 [ 29%] Built target coreneuron-for-tests
2879 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3
c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufc
v5damkqi/spack-build-nbrt2mt/bin/nrnivmodl-core -b STATIC -m /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/i
nstall_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46
770aa12665_develop-53hy2e/bin/nmodl -n internal -p 4 .
2880 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibl
s5g6wll3eufcv5damkqi/spack-build-nbrt2mt/bin', compiling default o
nes only!
2881 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d
amkqi/spack-build-nbrt2mt MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software
/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d
46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
2882 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt/bin'
2883 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2884 make[3]: xcrun: No such file or directory
2885 Default NMODL flags:
>> 2886 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2887 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2888 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2889 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2890 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
2891 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM
ath.h", line 984: warning: integer conversion resulted in a change
of sign [integer_sign_change]
2892 const __m128i sign_mask = _mm_set1_epi16(static_cast<numext::u
int16_t>(0x8000));
...
3821
3822 Creating 'x86_64' directory for .o files.
3823
3824 INFO:root:Extension common compile flags defaultdict(<class 'list'
>, {'library_dirs': ['/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717b
a3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eu
fcv5damkqi/spack-build-nbrt2mt/lib'], 'libraries': ['nrniv'], 'lan
guage': 'c++'})
3825 INFO:root:RX3D is DISABLED
3826 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver
sion_macros.o
>> 3827 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s
ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu
ptools.installer and fetch_build_eggs are deprecated.
3828 !!
3829
3830 **********************************************************
**********************
3831 Requirements should be satisfied by a PEP 517 installer.
3832 If you are using pip, you can try `pip install --use-pep51
7`.
3833 **********************************************************
**********************
...
3835 !!
3836 dist.fetch_build_eggs(dist.setup_requires)
3837 WARNING:root:WARNING: The wheel package is not available.
3838 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d
amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
3839 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/c448d279dd3b9
1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
3840 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3841 make[3]: xcrun: No such file or directory
3842 Default NMODL flags:
>> 3843 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3844 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3845 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3846 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3847 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
3848 [ 42%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/oc
kludge.cpp.o
3849 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322287/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-buil
d/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_
develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/ivoc -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/
spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5
9c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/n
rncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
7466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102
ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/s
pack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba
3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3euf
cv5damkqi/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibl
s5g6wll3eufcv5damkqi/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stag
e-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt
2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/src/nr
ncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217
466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102d
df4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/sp
ack-build-nbrt2mt/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-g
it.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5
g6wll3eufcv5damkqi/spack-build-nbrt2mt/src/nrnpython -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-b
uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1
75_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/sr
c/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21746
6/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf
4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spac
k-build-nbrt2mt/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls
5g6wll3eufcv5damkqi/spack-build-nbrt2mt/src/sundials -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-b
uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1
75_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/sr
c/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3
c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufc
v5damkqi/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll
3eufcv5damkqi/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neur
on-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvki
bls5g6wll3eufcv5damkqi/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/nrnpython -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/pa
rallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217
466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102d
df4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/sp
ack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717
ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3e
ufcv5damkqi/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neu
ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvk
ibls5g6wll3eufcv5damkqi/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/sundials -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294
/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c
59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/
sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
oj12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c3
89f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5
damkqi/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-ne
uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtv
kibls5g6wll3eufcv5damkqi/spack-src/src/sundials/shared -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack
-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72a
d175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/
src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6
rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5da
mkqi/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git.7
717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wl
l3eufcv5damkqi/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-
stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-
nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/nrnpython/../oc -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13222
94/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a997
1c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/sr
c/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717
ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3e
ufcv5damkqi/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/nrnpython/../nrni
v -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J
1322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405
5a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-s
rc/src/nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs
.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-sky
lake/python-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_
gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spac
k-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72
ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/
eigen -tp haswell -g -O1 -fno-omit-frame-pointer --c++17 --diag_s
uppress=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherr
or -MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o -MF
CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o.d -o CMakeFiles/nrniv.d
ir/__/oc/ockludge.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git.
7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6w
ll3eufcv5damkqi/spack-src/src/oc/ockludge.cpp
...
4545 [ 44%] Linking CXX executable ../../bin/test/sections_c
4546 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/api && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin
/cmake -E cmake_link_script CMakeFiles/sections_c.dir/link.txt --v
erbose=1
4547 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
287/spack/lib/spack/env/nvhpc/nvc++ -tp haswell -g -O1 -fno-omit-f
rame-pointer -noswitcherror -rdynamic CMakeFiles/sections_c.dir/s
ections.c.o -o ../../bin/test/sections_c -L/gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hp
e-mpi-2.27.p1.hmpt-6rr256/lib -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb
rt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/lib:/gpfs/bbp.c
scs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-
skylake/python-3.11.6-bj4i6m/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.
2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_appli
cations/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib:/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/inst
all_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64:/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-s
kylake/adiak-0.4.0-hficqq/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-
02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.h
mpt-6rr256/lib -ldl ../../lib/libnrniv.so ../../lib/libnrngnu.a ..
/../lib/libsparse13.a /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st
age_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/lib/
libpython3.11.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7/lib/lib
readline.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applic
ations/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libcurses
.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libform.so /gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/in
stall_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64/libcaliper.so
.2.11.0 -lpthread -lpthread -ldl -lmpi -lnvcpumath -Wl,-rpath-link
,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12.3.0-skylake/adiak-0.4.0-hficqq/lib
4548 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d
amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4549 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
4550 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4551 make[3]: xcrun: No such file or directory
4552 Default NMODL flags:
>> 4553 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4554 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt'
4555 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4556 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4557 [ 44%] Built target sections_c
4558 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <
argument> definition in NetReceiveBlock
4559 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <
argument> definition in NetReceiveBlock
...
4648 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d
amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4649 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod
4650 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/red
uced_dentate//mechanisms/Aradi_Na.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-
neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2m
tvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi
_Na.mod
4651 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
4652 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4653 MODOBJS= ./halfgap.o
>> 4654 make[3]: xcrun: No such file or directory
4655 Default NMODL flags:
4656 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/bbd7c82eee28b
931214a8172bb776ba66c406a6620c807381c850fedcdd74295/x86_64'
4657 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4658 -> Compiling mod_func.cpp
4659 -> NMODL .././halfgap.mod
>> 4660 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4661 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/ae2c9b73c9a624
bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/x86_64'
4662 Successfully created x86_64/special
4663 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt'
4664 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk
qi/spack-build-nbrt2mt/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/cagkftab.cpp
4665 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/CaBK.mod
4666 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/red
uced_dentate//mechanisms/CaBK.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neur
on-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvki
bls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/53c432f7
080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
...
4734 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/red
uced_dentate//mechanisms/iconc_Ca.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-
neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2m
tvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc
_Ca.mod
4735 [ 46%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/kcaPR.mod
4736 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/red
uced_dentate//mechanisms/kcaPR.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neu
ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvk
ibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/53c432f
7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mo
d
4737 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d
amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4738 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/b62f97c7d3f6d
905c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
4739 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4740 make[3]: xcrun: No such file or directory
4741 Default NMODL flags:
4742 [ 46%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/na3n.mod
4743 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/red
uced_dentate//mechanisms/na3n.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neur
on-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvki
bls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/53c432f7
080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
>> 4744 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4745 [NMODL] [warning] :: Can not inline function call to mynormrand
4746 [NMODL] [warning] :: Can not inline function call to mynormrand
4747 [NMODL] [warning] :: Can not inline function call to mynormrand
4748 [NMODL] [warning] :: Can not inline function call to mynormrand
4749 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4750 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
...
4795 [ 47%] Linking CXX executable ../bin/test/testneuron
4796 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E cmake_link_script CMakeFiles/testneuron.dir/link.txt --verbo
se=1
4797 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
287/spack/lib/spack/env/nvhpc/nvc++ -tp haswell -g -O1 -fno-omit-f
rame-pointer -noswitcherror CMakeFiles/testneuron.dir/common/catc
h2_main.cpp.o CMakeFiles/testneuron.dir/unit_tests/basic.cpp.o CMa
keFiles/testneuron.dir/unit_tests/iovec.cpp.o CMakeFiles/testneuro
n.dir/unit_tests/container/container.cpp.o CMakeFiles/testneuron.d
ir/unit_tests/container/generic_data_handle.cpp.o CMakeFiles/testn
euron.dir/unit_tests/container/mechanism.cpp.o CMakeFiles/testneur
on.dir/unit_tests/container/node.cpp.o CMakeFiles/testneuron.dir/u
nit_tests/node_order_optim/permutations.cpp.o CMakeFiles/testneuro
n.dir/unit_tests/utils/enumerate.cpp.o CMakeFiles/testneuron.dir/u
nit_tests/oc/hoc_interpreter.cpp.o CMakeFiles/testneuron.dir/cover
/unit_tests/cover.cpp.o -o ../bin/test/testneuron -L/gpfs/bbp.cs
cs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-s
kylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib -Wl,-rpath,/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/lib:/g
pfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc
c-12.3.0-skylake/python-3.11.6-bj4i6m/lib:/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/re
adline-8.2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib
:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/soft
ware/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64:/gpfs/
bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc
-12.3.0-skylake/adiak-0.4.0-hficqq/lib:/gpfs/bbp.cscs.ch/ssd/apps/
bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-
2.27.p1.hmpt-6rr256/lib ../lib/libCatch2.a ../lib/libnrniv.so -ldl
../lib/libnrngnu.a ../lib/libsparse13.a /gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python
-3.11.6-bj4i6m/lib/libpython3.11.so /gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline
-8.2-pdugg7/lib/libreadline.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6
kdbhv/lib/libcurses.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/s
tage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/li
b/libform.so /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P217466/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/
lib64/libcaliper.so.2.11.0 -lpthread -lpthread -ldl -lmpi -Wl,-rpa
th-link,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applicatio
ns/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq/lib
4798 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d
amkqi/spack-build-nbrt2mt INCFLAGS=-I/usr/include LINKFLAGS=/usr/l
ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC
NRN_PRCELLSTATE=0
4799 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/f7f437ac4f0ea
140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c'
4800 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4801 make[3]: xcrun: No such file or directory
4802 Default NMODL flags:
>> 4803 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4804 [NMODL] [warning] :: Can not inline function call to specify_invl
4805 [NMODL] [warning] :: Can not inline function call to specify_invl
4806 [NMODL] [warning] :: Can not inline function call to specify_invl
4807 [NMODL] [warning] :: Can not inline function call to specify_invl
4808 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4809 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
...
4821 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt'
4822 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/new_calcium_channels.mod
4823 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/new_calcium_channel
s.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4
055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack
-build-nbrt2mt/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165
552933d5963dc6fd47c3be88641a/new_calcium_channels.mod
4824 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d
amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4825 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/53c432f7080fe
7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
4826 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4827 make[3]: xcrun: No such file or directory
4828 Default NMODL flags:
>> 4829 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4830 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4831 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4832 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4833 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/Ca.mod
4834 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/Ca.mod /gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-bu
ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17
5_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/tes
t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47
c3be88641a/Ca.mod
4835 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
...
5002
5003 Creating 'x86_64' directory for .o files.
5004
5005 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d
amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5006 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/14c92ceb412f1
b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
5007 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5008 make[3]: xcrun: No such file or directory
5009 Default NMODL flags:
>> 5010 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5011 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5012 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5013 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5014 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5015 [NMODL] [warning] :: SYMTAB :: w [Argument] in NetReceiveBlock sha
dows <assigned_definition> definition in NMODL_GLOBAL
5016 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
...
5028 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk
qi/spack-build-nbrt2mt/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/ionleak.cpp
5029 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk
qi/spack-build-nbrt2mt/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/nacum.cpp
5030 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk
qi/spack-build-nbrt2mt/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/nacur.cpp
5031 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d
amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5032 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/3a24bd33c51ee
30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a'
5033 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5034 make[3]: xcrun: No such file or directory
5035 Default NMODL flags:
>> 5036 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5037 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5038 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5039 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5040 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5041 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5042 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
...
6167 [ 53%] Generating ../../external_ringtest_nrn/optim_node_order/tes
t_optimize_node_order.py
6168 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb
rt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/ringtest//
test_optimize_node_order.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/test/external_ringtest_nrn/op
tim_node_order/test_optimize_node_order.py
6169 [ 53%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli
ne_saverestore/ringtest.py
6170 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb
rt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/ringtest//
ringtest.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f351
02ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi
/spack-build-nbrt2mt/test/external_ringtest/coreneuron_cpu_mpi_off
line_saverestore/ringtest.py
6171 [ 53%] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringt
est.py
6172 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb
rt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/ringtest//
ringtest.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f351
02ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi
/spack-build-nbrt2mt/test/external_ringtest/coreneuron_cpu_mpi/rin
gtest.py
>> 6173 "ampanmda.cpp", line 605: error: identifier "_globals" is undefine
d
6174 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] )
;
6175 ^
6176
6177 1 error detected in the compilation of "ampanmda.cpp".
>> 6178 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 2
6179 make[3]: *** Waiting for unfinished jobs....
6180 [ 54%] Generating ../../external_ringtest_nrn/optim_node_order/cel
l.hoc
6181 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb
rt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/ringtest//
cell.hoc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217
466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102d
df4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/sp
ack-build-nbrt2mt/test/external_ringtest_nrn/optim_node_order/cell
.hoc
6182 [ 54%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli
ne_saverestore/ringuniform.py
6183 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb
rt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/ringtest//
ringuniform.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f
35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5dam
kqi/spack-build-nbrt2mt/test/external_ringtest/coreneuron_cpu_mpi_
offline_saverestore/ringuniform.py
6184 [ 54%] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringu
niform.py
...
6200 make -f test/external/ringtest/CMakeFiles/copy-scripts-external_r
ingtest-coreneuron_cpu_mpi_offline.dir/build.make test/external/ri
ngtest/CMakeFiles/copy-scripts-external_ringtest-coreneuron_cpu_mp
i_offline.dir/depend
6201 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt'
6202 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibl
s5g6wll3eufcv5damkqi/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls
5g6wll3eufcv5damkqi/spack-src/test/external/ringtest /gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-bui
ld/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175
_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt /gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/
spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5
9c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbr
t2mt/test/external/ringtest /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/test/external/ringtest/CMakeF
iles/copy-scripts-external_ringtest-coreneuron_cpu_mpi_offline.dir
/DependInfo.cmake "--color="
6203 [ 54%] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.
hoc
6204 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb
rt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/ringtest//
cell.hoc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217
466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102d
df4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/sp
ack-build-nbrt2mt/test/external_ringtest/coreneuron_cpu_mpi/cell.h
oc
6205 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/14c92ceb412f1b
4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64'
>> 6206 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_
nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068
9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd
a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2
6207 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt'
>> 6208 make[1]: *** [CMakeFiles/Makefile2:11803: test/external/olfactory-
bulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec
75b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2
6209 make[1]: *** Waiting for unfinished jobs....
6210 [ 55%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli
ne_saverestore/celluniform.hoc
6211 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu
ild-nbrt2mt/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb
rt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/ringtest//
celluniform.hoc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5da
mkqi/spack-build-nbrt2mt/test/external_ringtest/coreneuron_cpu_mpi
_offline_saverestore/celluniform.hoc
6212 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt'
6213 make -f test/external/ringtest/CMakeFiles/copy-scripts-external_r
ingtest-coreneuron_cpu_mpi_offline.dir/build.make test/external/ri
ngtest/CMakeFiles/copy-scripts-external_ringtest-coreneuron_cpu_mp
i_offline.dir/build
6214 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g
6wll3eufcv5damkqi/spack-build-nbrt2mt'
...
6637 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
6638 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/3a24bd33c51ee3
0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64'
6639 Successfully created x86_64/special
6640 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt'
6641 [ 55%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1
46a37c165552933d5963dc6fd47c3be88641a
6642 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6
wll3eufcv5damkqi/spack-build-nbrt2mt'
>> 6643 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322294/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r4i6n24: task 0: Exited with exit code 1
section_end:1718653191:step_script section_start:1718653191:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=114526 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1322294 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=114568 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1322294 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=114609 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1322294 responseStatus=201 Created token=glcbt-64
section_end:1718653193:upload_artifacts_on_failure section_start:1718653193:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718653195:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-nvhpc-omp.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718651646:resolve_secrets Resolving secrets
section_end:1718651646:resolve_secrets section_start:1718651646:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1853363692, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 217466, build ref , job ID 1322295
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1322295_PROD_P2160_CP17_C34
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2255682
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322295_PROD_P2160_CP17_C34 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --ntasks=2 --jobid=2255682 --cpus-per-task=8 --mem=160G
section_end:1718651650:prepare_executor section_start:1718651650:prepare_script Preparing environment
Using git from spack modules
Running on r4i6n25 via bbpv1.epfl.ch...
section_end:1718651655:prepare_script section_start:1718651655:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718651657:get_sources section_start:1718651657:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=87348 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718651662:restore_cache section_start:1718651662:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1322289)...
Runtime platform  arch=amd64 os=linux pid=87446 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1322289 responseStatus=200 OK token=glcbt-64
section_end:1718651664:download_artifacts section_start:1718651664:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466/J1322295_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/53hy2ex7xntc24cnbuojh6rrc3l2auap
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255682/ccache
Config file: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255682/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Mon Jun 17 21:14:37 2024
Local storage:
Cache size (GB): 0.46 / 0.51 (90.02%)
Files: 10494
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/53hy2ex7xntc24cnbuojh6rrc3l2auap
- ^caliper+cuda cuda_arch=70
Concretized
--------------------------------
- bnprn6g neuron@git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
- vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
==> Installing neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-bnprn6guwoub4f74zhhyhh4tqphjptkp [55/55]
==> No binary for neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-bnprn6guwoub4f74zhhyhh4tqphjptkp found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
24 errors found in build log:
2878 [ 29%] Built target coreneuron-for-tests
2879 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3
c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4t
qphjptkp/spack-build-bnprn6g/bin/nrnivmodl-core -b STATIC -m /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/i
nstall_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46
770aa12665_develop-53hy2e/bin/nmodl -n internal -p 4 .
2880 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub
4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/bin', compiling default o
nes only!
2881 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph
jptkp/spack-build-bnprn6g MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software
/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d
46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
2882 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7
4zhhyhh4tqphjptkp/spack-build-bnprn6g/bin'
2883 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2884 make[3]: xcrun: No such file or directory
2885 Default NMODL flags:
>> 2886 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2887 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2888 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2889 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2890 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
2891 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM
ath.h", line 984: warning: integer conversion resulted in a change
of sign [integer_sign_change]
2892 const __m128i sign_mask = _mm_set1_epi16(static_cast<numext::u
int16_t>(0x8000));
...
3821 INFO:root:RX3D is DISABLED
3822 "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"
3823
3824 Creating 'x86_64' directory for .o files.
3825
3826 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver
sion_macros.o
>> 3827 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s
ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu
ptools.installer and fetch_build_eggs are deprecated.
3828 !!
3829
3830 **********************************************************
**********************
3831 Requirements should be satisfied by a PEP 517 installer.
3832 If you are using pip, you can try `pip install --use-pep51
7`.
3833 **********************************************************
**********************
...
3835 !!
3836 dist.fetch_build_eggs(dist.setup_requires)
3837 WARNING:root:WARNING: The wheel package is not available.
3838 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph
jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
3839 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7
4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/c448d279dd3b9
1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
3840 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3841 make[3]: xcrun: No such file or directory
3842 Default NMODL flags:
>> 3843 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3844 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3845 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3846 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3847 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
3848 [ 42%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/oc
kludge.cpp.o
3849 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322287/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-buil
d/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_
develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/src/ivoc -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/
spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5
9c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/src/n
rncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
7466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102
ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/s
pack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba
3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4
tqphjptkp/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub
4f74zhhyhh4tqphjptkp/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stag
e-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnpr
n6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/src/nr
ncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217
466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102d
df4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/sp
ack-build-bnprn6g/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-g
it.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f
74zhhyhh4tqphjptkp/spack-build-bnprn6g/src/nrnpython -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-b
uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1
75_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/sr
c/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21746
6/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf
4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spac
k-build-bnprn6g/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4
f74zhhyhh4tqphjptkp/spack-build-bnprn6g/src/sundials -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-b
uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1
75_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/sr
c/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3
c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4t
qphjptkp/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git.77
17ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhh
yhh4tqphjptkp/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neur
on-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwo
ub4f74zhhyhh4tqphjptkp/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/src/nrnpython -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/s
pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59
c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/src/pa
rallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217
466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102d
df4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/sp
ack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717
ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyh
h4tqphjptkp/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neu
ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guw
oub4f74zhhyhh4tqphjptkp/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/src/sundials -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295
/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c
59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/src/
sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
oj12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c3
89f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqp
hjptkp/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-ne
uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6gu
woub4f74zhhyhh4tqphjptkp/spack-src/src/sundials/shared -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack
-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72a
d175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/
src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6
rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphj
ptkp/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git.7
717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zh
hyhh4tqphjptkp/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-
stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-
bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/src/nrnpython/../oc -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J13222
95/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a997
1c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/sr
c/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717
ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyh
h4tqphjptkp/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/src/nrnpython/../nrni
v -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J
1322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405
5a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-s
rc/src/nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7
4zhhyhh4tqphjptkp/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs
.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-sky
lake/python-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_
gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spac
k-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72
ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/
eigen -tp haswell -g -O1 -fno-omit-frame-pointer --c++17 --diag_s
uppress=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherr
or -MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o -MF
CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o.d -o CMakeFiles/nrniv.d
ir/__/oc/ockludge.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git.
7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74z
hhyhh4tqphjptkp/spack-src/src/oc/ockludge.cpp
...
4507 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjpt
kp/spack-build-bnprn6g/test/nrnivmodl/c448d279dd3b91940d228c42e4a7
c280bafe100b4e840f9c938be979cceb8fe0/x86_64/unitstest.cpp
4508 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f3
5102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjpt
kp/spack-build-bnprn6g/test/nrnivmodl/c448d279dd3b91940d228c42e4a7
c280bafe100b4e840f9c938be979cceb8fe0/x86_64/version_macros.cpp
4509 MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.
o ./green.o ./invlfire.o ./natrans.o ./netmove.o ./noisychan.o ./r
ed.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o ./
watchrange2.o
4510 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph
jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4511 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7
4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
4512 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4513 make[3]: xcrun: No such file or directory
4514 Default NMODL flags:
>> 4515 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4516 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4517 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4518 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <
argument> definition in NetReceiveBlock
4519 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <
argument> definition in NetReceiveBlock
4520 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <
argument> definition in NetReceiveBlock
4521 make -f test/api/CMakeFiles/hh_sim_cpp.dir/build.make test/api/CM
akeFiles/hh_sim_cpp.dir/depend
...
4641 make -f test/external/ringtest/CMakeFiles/NRN_TEST_nrnivmodl_bbd7
c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295.dir/b
uild.make test/external/ringtest/CMakeFiles/NRN_TEST_nrnivmodl_bbd
7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295.dir/
depend
4642 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7
4zhhyhh4tqphjptkp/spack-build-bnprn6g'
4643 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron
-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub
4f74zhhyhh4tqphjptkp/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-
git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4
f74zhhyhh4tqphjptkp/spack-src/test/external/ringtest /gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-bui
ld/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175
_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g /gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/
spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5
9c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnp
rn6g/test/external/ringtest /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/test/external/ringtest/CMakeF
iles/NRN_TEST_nrnivmodl_bbd7c82eee28b931214a8172bb776ba66c406a6620
c807381c850fedcdd74295.dir/DependInfo.cmake "--color="
4644 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph
jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4645 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7
4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
4646 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4647 make[3]: xcrun: No such file or directory
4648 Default NMODL flags:
4649 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g'
4650 make -f test/external/ringtest/CMakeFiles/NRN_TEST_nrnivmodl_bbd7
c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295.dir/b
uild.make test/external/ringtest/CMakeFiles/NRN_TEST_nrnivmodl_bbd
7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295.dir/
build
4651 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/LcaMig.mod
4652 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/red
uced_dentate//mechanisms/LcaMig.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-ne
uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6gu
woub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.
mod
4653 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7
4zhhyhh4tqphjptkp/spack-build-bnprn6g'
>> 4654 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4655 [ 45%] Generating ../../nrnivmodl/bbd7c82eee28b931214a8172bb776ba6
6c406a6620c807381c850fedcdd74295/halfgap.mod
4656 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn
prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest//
mod/halfgap.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389
f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphj
ptkp/spack-build-bnprn6g/test/nrnivmodl/bbd7c82eee28b931214a8172bb
776ba66c406a6620c807381c850fedcdd74295/halfgap.mod
4657 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
4658 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/s
pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev
elop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/red
uced_dentate//mechanisms/SH_KIn.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-ne
uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6gu
woub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.
mod
4659 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4660 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
...
4745 MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o .
/vecevent.o
4746 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322
295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99
71c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build
-bnprn6g/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d20
0c645a6b4cec93b5edfead
4747 cfiles =
4748 Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod"
"./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod
" "./DGC_M.mod" "./DGC_UK.mod"[INFO] Running: make -j4 -f /gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spac
k-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72
ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g
/share/coreneuron/nrnivmodl_core_makefile ROOT=/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spa
ck-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_devel
op-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g MODS_PATH=
x86_64/corenrn/mod2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
4749 "./DGC_sAHP.mod"make[3]: Entering directory '/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spac
k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo
p-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivm
odl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee8
76'
4750 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4751 "./Gfluct3.mod"make[3]: xcrun: No such file or directory
4752 Default NMODL flags:
>> 4753 "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod"diff:
x86_64/corenrn/mod2c/_mod_func.cpp: No such file or directory
4754 [NMODL] [warning] :: Can not inline function call to mynormrand
4755 [NMODL] [warning] :: Can not inline function call to mynormrand
4756 [NMODL] [warning] :: Can not inline function call to mynormrand
4757 [NMODL] [warning] :: Can not inline function call to mynormrand
4758 "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hype
rde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mo
d" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod"
4759
...
4764 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4765 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4766 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
4767 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph
jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4768 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7
4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/53c432f7080fe
7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
4769 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4770 make[3]: xcrun: No such file or directory
4771 Default NMODL flags:
>> 4772 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4773 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4774 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4775 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4776 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /gpfs/bbp
.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255682/pgcudafatJgEyPL4v5W
5B.o: missing .note.GNU-stack section implies executable stack
4777 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
4778 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/c448d279dd3b91
940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64'
...
4804 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4805 MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o
4806 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/ae2c9b73c9a624
bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/x86_64/./libnrn
mech.so"
4807 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph
jptkp/spack-build-bnprn6g INCFLAGS=-I/usr/include LINKFLAGS=/usr/l
ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC
NRN_PRCELLSTATE=0
4808 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7
4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/f7f437ac4f0ea
140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c'
4809 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4810 make[3]: xcrun: No such file or directory
4811 Default NMODL flags:
>> 4812 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4813 [NMODL] [warning] :: Can not inline function call to specify_invl
4814 [NMODL] [warning] :: Can not inline function call to specify_invl
4815 [NMODL] [warning] :: Can not inline function call to specify_invl
4816 [NMODL] [warning] :: Can not inline function call to specify_invl
4817 [NMODL] [warning] :: Can not inline function call to specify_invl
4818 [NMODL] [warning] :: Can not inline function call to specify_invl
...
4980 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kd2.mod /gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-b
uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1
75_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/te
st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4
7c3be88641a/kd2.mod
4981 [ 48%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/kdb.mod
4982 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kdb.mod /gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-b
uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1
75_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/te
st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4
7c3be88641a/kdb.mod
4983 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph
jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4984 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7
4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/14c92ceb412f1
b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
4985 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4986 make[3]: xcrun: No such file or directory
4987 Default NMODL flags:
4988 [ 48%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/kdrbca1.mod
4989 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kdrbca1.mod /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spa
ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7
2ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6
g/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc
6fd47c3be88641a/kdrbca1.mod
>> 4990 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4991 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
4992 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
4993 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
4994 [ 48%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/kdrca1.mod
4995 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build
/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d
evelop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kdrca1.mod /gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spac
k-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72
ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g
/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6
fd47c3be88641a/kdrca1.mod
4996 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
...
5028
5029 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
5030 MODOBJS= ./Ca.o ./CaDynamics_DC0.o ./CaDynamics_E2.o ./Ca_HVA.o ./
Ca_HVA2.o ./Ca_LVAst.o ./CoreConfig.o ./Ih.o ./Im.o ./K_Pst.o ./K_
Tst.o ./KdShu2007.o ./NaTa_t.o ./NaTg.o ./NaTs2_t.o ./Nap_Et2.o ./
ProbAMPANMDA_EMS.o ./ProbGABAAB_EMS.o ./ProfileHelper.o ./SK_E2.o
./SKv3_1.o ./TTXDynamicsSwitch.o ./VecStim.o ./cacumm.o ./cacummb.
o ./cagk.o ./cal2.o ./can2.o ./cat.o ./gap.o ./h.o ./halfgap.o ./k
adist.o ./kaprox.o ./kca.o ./kd.o ./kd2.o ./kdb.o ./kdrbca1.o ./kd
rca1.o ./km.o ./kmb.o ./na3n.o ./naxn.o ./netstim_inhpoisson.o ./n
ew_calcium_channels.o
5031 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c38
9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph
jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5032 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7
4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/3a24bd33c51ee
30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a'
5033 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5034 make[3]: xcrun: No such file or directory
5035 Default NMODL flags:
>> 5036 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5037 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /gpfs/bbp
.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255682/pgcudafat6h7yUH2IiL
de.o: missing .note.GNU-stack section implies executable stack
5038 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5039 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/a9c54b18e4b543
51cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
5040 [INFO] MOD files built successfully for CoreNEURON
5041 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-gi
t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7
4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64'
5042 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
...
6287 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi_offli
ne_saverestore/ring.py
6288 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn
prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest//
ring.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174
66/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd
f4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spa
ck-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi_offline
_saverestore/ring.py
6289 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi/ranpa
rm.py
6290 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn
prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest//
ranparm.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
17466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f3510
2ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/
spack-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi/ranp
arm.py
6291 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi_offli
ne/commonutils.py
6292 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn
prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest//
commonutils.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f
35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjp
tkp/spack-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi_
offline/commonutils.py
>> 6293 "ampanmda.cpp", line 605: error: identifier "_globals" is undefine
d
6294 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] )
;
6295 ^
6296
6297 1 error detected in the compilation of "ampanmda.cpp".
>> 6298 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 2
6299 make[3]: *** Waiting for unfinished jobs....
6300 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi_offli
ne_saverestore/ringtest.py
6301 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn
prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest//
ringtest.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f351
02ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp
/spack-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi_off
line_saverestore/ringtest.py
6302 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi/ring.
py
6303 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn
prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest//
ring.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174
66/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd
f4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spa
ck-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi/ring.py
6304 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi_offli
ne/ranparm.py
...
6311 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn
prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest//
ring.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174
66/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd
f4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spa
ck-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi_offline
/ring.py
6312 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi_offli
ne_saverestore/settings.py
6313 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn
prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest//
settings.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f351
02ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp
/spack-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi_off
line_saverestore/settings.py
6314 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi/ringu
niform.py
6315 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn
prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest//
ringuniform.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f
35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjp
tkp/spack-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi/
ringuniform.py
6316 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/14c92ceb412f1b
4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64'
>> 6317 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_
nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068
9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd
a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2
6318 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g'
>> 6319 make[1]: *** [CMakeFiles/Makefile2:11803: test/external/olfactory-
bulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec
75b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2
6320 make[1]: *** Waiting for unfinished jobs....
6321 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi_offli
ne/ringtest.py
6322 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn
prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest//
ringtest.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f351
02ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp
/spack-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi_off
line/ringtest.py
6323 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi/setti
ngs.py
6324 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1
322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055
a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu
ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-st
age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn
prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest//
settings.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f351
02ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp
/spack-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi/set
tings.py
6325 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi_offli
ne_saverestore/test_optimize_node_order.py
...
6749 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
6750 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/3a24bd33c51ee3
0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64'
6751 Successfully created x86_64/special
6752 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g'
6753 [ 56%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1
46a37c165552933d5963dc6fd47c3be88641a
6754 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git
.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74
zhhyhh4tqphjptkp/spack-build-bnprn6g'
>> 6755 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322295/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r4i6n25: task 0: Exited with exit code 1
section_end:1718653282:step_script section_start:1718653282:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=107992 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1322295 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=108028 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1322295 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=108071 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1322295 responseStatus=201 Created token=glcbt-64
section_end:1718653286:upload_artifacts_on_failure section_start:1718653286:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718653287:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-nmodl.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718651311:resolve_secrets Resolving secrets
section_end:1718651311:resolve_secrets section_start:1718651311:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor645830359, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 217466, build ref , job ID 1322289
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1322289_PROD_P2160_CP7_C22
Job parameters: memory=160G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2255664
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322289_PROD_P2160_CP7_C22 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466 --ntasks=2 --jobid=2255664 --cpus-per-task=8 --mem=160G
section_end:1718651314:prepare_executor section_start:1718651314:prepare_script Preparing environment
Using git from spack modules
Running on r1i7n20 via bbpv1.epfl.ch...
section_end:1718651317:prepare_script section_start:1718651317:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718651318:get_sources section_start:1718651318:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:nmodl-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=246127 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718651324:restore_cache section_start:1718651324:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for spack_setup (1322287)...
Runtime platform  arch=amd64 os=linux pid=246255 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1322287 responseStatus=200 OK token=glcbt-64
section_end:1718651325:download_artifacts section_start:1718651325:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322289/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322289/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322289/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322289/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322289/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322289/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/J1322287/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217466/J1322289_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install nmodl%gcc ~legacy-unit
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2255664/ccache
Config file: /nvme/bbpcihpcproj12/2255664/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Mon Jun 17 21:08:50 2024
Local storage:
Cache size (GB): 0.45 / 0.51 (87.21%)
Files: 5143
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- nmodl%gcc~legacy-unit
Concretized
--------------------------------
- 53hy2ex nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
==> Installing nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665=develop-53hy2ex7xntc24cnbuojh6rrc3l2auap [19/19]
==> No binary for nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665=develop-53hy2ex7xntc24cnbuojh6rrc3l2auap found: installing from source
==> No patches needed for nmodl
==> nmodl: Executing phase: 'cmake'
==> nmodl: Executing phase: 'build'
==> nmodl: Executing phase: 'install'
==> nmodl: Successfully installed nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665=develop-53hy2ex7xntc24cnbuojh6rrc3l2auap
Stage: 47.94s. Cmake: 2.66s. Build: 1m 32.56s. Install: 1.47s. Post-install: 0.36s. Total: 2m 25.25s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217466/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be 53hy2ex7xntc24cnbuojh6rrc3l2auap
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2255664/ccache
Config file: /nvme/bbpcihpcproj12/2255664/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Mon Jun 17 21:13:31 2024
Cacheable calls: 138 / 165 (83.64%)
Hits: 136 / 138 (98.55%)
Direct: 28 / 136 (20.59%)
Preprocessed: 108 / 136 (79.41%)
Misses: 2 / 138 ( 1.45%)
Uncacheable calls: 27 / 165 (16.36%)
Called for linking: 24 / 27 (88.89%)
No input file: 3 / 27 (11.11%)
Successful lookups:
Direct: 28 / 138 (20.29%)
Preprocessed: 108 / 110 (98.18%)
Local storage:
Cache size (GB): 0.45 / 0.51 (87.22%)
Files: 5147
Hits: 136 / 138 (98.55%)
Misses: 2 / 138 ( 1.45%)
Reads: 276
Writes: 4
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1718651612:step_script section_start:1718651612:archive_cache Saving cache for successful job
Using git from spack modules
Creating cache build:nmodl-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=250245 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected
Created cache
section_end:1718651635:archive_cache section_start:1718651635:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=250979 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1322289 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=251025 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1322289 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=251077 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1322289 responseStatus=201 Created token=glcbt-64
section_end:1718651637:upload_artifacts_on_success section_start:1718651637:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718651639:cleanup_file_variables Job succeeded
Raw
mac-m1-cmake-build-cmake-on-off-off-address.txt
This file has been truncated, but you can view the full file.
Running with gitlab-runner 15.4.0 (43b2dc3d)
 on macos-arm64 vGzz-bdp
section_start:1718651251:resolve_secrets Resolving secrets
section_end:1718651251:resolve_secrets section_start:1718651251:prepare_executor Preparing the "shell" executor
Using Shell executor...
section_end:1718651251:prepare_executor section_start:1718651251:prepare_script Preparing environment
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1718651251:prepare_script section_start:1718651251:get_sources Getting source from Git repository
Fetching changes with git depth set to 20...
Initialized empty Git repository in /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/.git/
Created fresh repository.
Checking out 7717ba3c as cornu/use_globals...
Skipping Git submodules setup
section_end:1718651253:get_sources section_start:1718651253:restore_cache Restoring cache
Checking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-cornu/use_globals-1-non_protected...
Runtime platform  arch=arm64 os=darwin pid=76038 revision=43b2dc3d version=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.
Successfully extracted cache
section_end:1718651254:restore_cache section_start:1718651254:step_script Executing "step_script" stage of the job script
$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command
$ real_python=$(python3 resolve_shim.py)
$ echo "python3=$(command -v python3) is really ${real_python}"
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv
$ venv/bin/python3 -m ensurepip --upgrade --default-pip
Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpb_qqo1sl
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpb_qqo1sl/setuptools-68.2.2-py3-none-any.whl
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpb_qqo1sl/pip-23.3.1-py3-none-any.whl
Installing collected packages: setuptools, pip
Successfully installed pip-23.3.1 setuptools-68.2.2
$ git submodule update --init --recursive --force --depth 1 -- external/nmodl
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl'
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl'...
From https://github.com/BlueBrain/nmodl
* branch c5ecfea39cbd53ffcc248b1dcf732c1e0ae1ffc4 -> FETCH_HEAD
Submodule path 'external/nmodl': checked out 'c5ecfea39cbd53ffcc248b1dcf732c1e0ae1ffc4'
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions'
Submodule 'ext/backward' (https://github.com/bombela/backward-cpp.git) registered for path 'external/nmodl/ext/backward'
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2'
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11'
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen'
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt'
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json'
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11'
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog'
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'...
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/ext/backward'...
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/ext/catch2'...
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/ext/cli11'...
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/ext/eigen'...
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/ext/fmt'...
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/ext/json'...
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/ext/pybind11'...
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/ext/spdlog'...
From https://github.com/BlueBrain/hpc-coding-conventions
* branch f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d'
Submodule path 'external/nmodl/ext/backward': checked out '51f0700452cf71c57d43c2d028277b24cde32502'
From https://github.com/catchorg/Catch2
* branch 8ac8190e494a381072c89f5e161b92a08d98b37b -> FETCH_HEAD
Submodule path 'external/nmodl/ext/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
From https://github.com/CLIUtils/CLI11
* branch f4d0731cebb123ff0ace712c099dffbcd2c58e5a -> FETCH_HEAD
Submodule path 'external/nmodl/ext/cli11': checked out 'f4d0731cebb123ff0ace712c099dffbcd2c58e5a'
From https://gitlab.com/libeigen/eigen
* branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
From https://github.com/fmtlib/fmt
* branch e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281'
From https://github.com/nlohmann/json
* branch 9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/json': checked out '9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03'
From https://github.com/pybind/pybind11
* branch 3e9dfa2866941655c56877882565e7577de6fc7b -> FETCH_HEAD
Submodule path 'external/nmodl/ext/pybind11': checked out '3e9dfa2866941655c56877882565e7577de6fc7b'
From https://github.com/gabime/spdlog
* branch 7c02e204c92545f869e2f04edaab1f19fe8b19fd -> FETCH_HEAD
Submodule path 'external/nmodl/ext/spdlog': checked out '7c02e204c92545f869e2f04edaab1f19fe8b19fd'
$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt
Ignoring importlib-metadata: markers 'python_version < "3.9"' don't match your environment
Ignoring importlib-resources: markers 'python_version < "3.9"' don't match your environment
Collecting scikit-build-core (from -r external/nmodl/requirements.txt (line 2))
Using cached scikit_build_core-0.9.6-py3-none-any.whl.metadata (19 kB)
Collecting setuptools-scm>=8.0 (from -r external/nmodl/requirements.txt (line 3))
Using cached setuptools_scm-8.1.0-py3-none-any.whl.metadata (6.6 kB)
Collecting Jinja2>=2.9.3 (from -r external/nmodl/requirements.txt (line 4))
Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
Collecting PyYAML>=3.13 (from -r external/nmodl/requirements.txt (line 5))
Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB)
Collecting find_libpython (from -r external/nmodl/requirements.txt (line 7))
Using cached find_libpython-0.4.0-py3-none-any.whl.metadata (2.8 kB)
Collecting sympy>=1.3 (from -r external/nmodl/requirements.txt (line 8))
Using cached sympy-1.12.1-py3-none-any.whl.metadata (12 kB)
Collecting pytest<=8.1.1 (from -r external/nmodl/requirements.txt (line 12))
Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB)
Collecting pytest-cov (from -r external/nmodl/requirements.txt (line 13))
Using cached pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB)
Collecting numpy (from -r external/nmodl/requirements.txt (line 14))
Using cached numpy-2.0.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (114 kB)
Collecting jupyter-client (from -r external/nmodl/requirements.txt (line 16))
Using cached jupyter_client-8.6.2-py3-none-any.whl.metadata (8.3 kB)
Collecting jupyter (from -r external/nmodl/requirements.txt (line 17))
Using cached jupyter-1.0.0-py2.py3-none-any.whl.metadata (995 bytes)
Collecting myst_parser<2.0.0 (from -r external/nmodl/requirements.txt (line 18))
Using cached myst_parser-1.0.0-py3-none-any.whl.metadata (5.5 kB)
Collecting mistune<3 (from -r external/nmodl/requirements.txt (line 19))
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Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting executing>=1.2.0 (from stack-data->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting asttokens>=2.1.0 (from stack-data->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting fqdn (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting jsonpointer>1.13 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Using cached uri_template-1.3.0-py3-none-any.whl.metadata (8.8 kB)
Collecting webcolors>=1.11 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached webcolors-24.6.0-py3-none-any.whl.metadata (2.6 kB)
Collecting cffi>=1.0.1 (from argon2-cffi-bindings->argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached cffi-1.16.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (1.5 kB)
Collecting pycparser (from cffi>=1.0.1->argon2-cffi-bindings->argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting arrow>=0.15.0 (from isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached arrow-1.3.0-py3-none-any.whl.metadata (7.5 kB)
Collecting types-python-dateutil>=2.8.10 (from arrow>=0.15.0->isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Installing collected packages: webencodings, wcwidth, snowballstemmer, pure-eval, ptyprocess, mpmath, mistune, find_libpython, fastjsonschema, widgetsnbextension, websocket-client, webcolors, urllib3, uri-template, typing-extensions, types-python-dateutil, traitlets, tornado, tomli, tinycss2, sympy, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, sniffio, six, send2trash, rpds-py, rfc3986-validator, pyzmq, PyYAML, python-json-logger, pygments, pycparser, psutil, prompt-toolkit, prometheus-client, pluggy, platformdirs, pexpect, pathspec, parso, pandocfilters, packaging, overrides, numpy, nest-asyncio, mdurl, MarkupSafe, jupyterlab-widgets, jupyterlab-pygments, jsonpointer, json5, iniconfig, imagesize, idna, h11, fqdn, executing, exceptiongroup, docutils, defusedxml, decorator, debugpy, coverage, charset-normalizer, certifi, babel, attrs, appnope, alabaster, terminado, setuptools-scm, scikit-build-core, rfc3339-validator, requests, referencing, qtpy, python-dateutil, pytest, matplotlib-inline, markdown-it-py, jupyter-core, Jinja2, jedi, httpcore, comm, cffi, bleach, beautifulsoup4, async-lru, asttokens, anyio, stack-data, sphinx, pytest-cov, mdit-py-plugins, jupyter-server-terminals, jupyter-client, jsonschema-specifications, httpx, arrow, argon2-cffi-bindings, sphinxcontrib-jquery, myst_parser, jsonschema, isoduration, ipython, argon2-cffi, sphinx-rtd-theme, nbformat, ipywidgets, ipykernel, qtconsole, nbclient, jupyter-events, jupyter-console, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, notebook, jupyter
Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 PyYAML-6.0.1 alabaster-0.7.16 anyio-4.4.0 appnope-0.1.4 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 asttokens-2.4.1 async-lru-2.0.4 attrs-23.2.0 babel-2.15.0 beautifulsoup4-4.12.3 bleach-6.1.0 certifi-2024.6.2 cffi-1.16.0 charset-normalizer-3.3.2 comm-0.2.2 coverage-7.5.3 debugpy-1.8.1 decorator-5.1.1 defusedxml-0.7.1 docutils-0.19 exceptiongroup-1.2.1 executing-2.0.1 fastjsonschema-2.20.0 find_libpython-0.4.0 fqdn-1.5.1 h11-0.14.0 httpcore-1.0.5 httpx-0.27.0 idna-3.7 imagesize-1.4.1 iniconfig-2.0.0 ipykernel-6.29.4 ipython-8.25.0 ipywidgets-8.1.3 isoduration-20.11.0 jedi-0.19.1 json5-0.9.25 jsonpointer-3.0.0 jsonschema-4.22.0 jsonschema-specifications-2023.12.1 jupyter-1.0.0 jupyter-client-8.6.2 jupyter-console-6.6.3 jupyter-core-5.7.2 jupyter-events-0.10.0 jupyter-lsp-2.2.5 jupyter-server-2.14.1 jupyter-server-terminals-0.5.3 jupyterlab-4.2.2 jupyterlab-pygments-0.3.0 jupyterlab-server-2.27.2 jupyterlab-widgets-3.0.11 markdown-it-py-2.2.0 matplotlib-inline-0.1.7 mdit-py-plugins-0.3.5 mdurl-0.1.2 mistune-2.0.5 mpmath-1.3.0 myst_parser-1.0.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.9.4 nest-asyncio-1.6.0 notebook-7.2.1 notebook-shim-0.2.4 numpy-2.0.0 overrides-7.7.0 packaging-24.1 pandocfilters-1.5.1 parso-0.8.4 pathspec-0.12.1 pexpect-4.9.0 platformdirs-4.2.2 pluggy-1.5.0 prometheus-client-0.20.0 prompt-toolkit-3.0.47 psutil-5.9.8 ptyprocess-0.7.0 pure-eval-0.2.2 pycparser-2.22 pygments-2.18.0 pytest-8.1.1 pytest-cov-5.0.0 python-dateutil-2.9.0.post0 python-json-logger-2.0.7 pyzmq-26.0.3 qtconsole-5.5.2 qtpy-2.4.1 referencing-0.35.1 requests-2.32.3 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.18.1 scikit-build-core-0.9.6 send2trash-1.8.3 setuptools-scm-8.1.0 six-1.16.0 sniffio-1.3.1 snowballstemmer-2.2.0 soupsieve-2.5 sphinx-5.3.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 stack-data-0.6.3 sympy-1.12.1 terminado-0.18.1 tinycss2-1.3.0 tomli-2.0.1 tornado-6.4.1 traitlets-5.14.3 types-python-dateutil-2.9.0.20240316 typing-extensions-4.12.2 uri-template-1.3.0 urllib3-2.2.2 wcwidth-0.2.13 webcolors-24.6.0 webencodings-0.5.1 websocket-client-1.8.0 widgetsnbextension-4.0.11
[notice] A new release of pip is available: 23.3.1 -> 24.0
[notice] To update, run: /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/venv/bin/python3 -m pip install --upgrade pip
$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1)
Collecting pip
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Requirement already satisfied: pytest<=8.1.1 in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 11)) (8.1.1)
Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 12)) (5.0.0)
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Using cached mpi4py-3.1.6-cp310-cp310-macosx_12_0_arm64.whl
Collecting numpy<2 (from -r nrn_requirements.txt (line 14))
Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB)
Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 15)) (0.4.0)
Requirement already satisfied: tomli>=1 in ./venv/lib/python3.10/site-packages (from setuptools_scm->-r nrn_requirements.txt (line 3)) (2.0.1)
Collecting distro (from scikit-build->-r nrn_requirements.txt (line 4))
Using cached distro-1.9.0-py3-none-any.whl.metadata (6.8 kB)
Collecting contourpy>=1.0.1 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting cycler>=0.10 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (162 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB)
Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.2 kB)
Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB)
Requirement already satisfied: python-dateutil>=2.7 in ./venv/lib/python3.10/site-packages (from matplotlib->-r nrn_requirements.txt (line 5)) (2.9.0.post0)
Requirement already satisfied: Jinja2>=2.9 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (3.1.4)
Requirement already satisfied: PyYAML>=3.10 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (6.0.1)
Requirement already satisfied: tornado>=5.1 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (6.4.1)
Requirement already satisfied: typing-extensions>=3.10.0 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (4.12.2)
Requirement already satisfied: decorator in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (5.1.1)
Requirement already satisfied: jedi>=0.16 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.19.1)
Requirement already satisfied: matplotlib-inline in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.1.7)
Requirement already satisfied: prompt-toolkit<3.1.0,>=3.0.41 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (3.0.47)
Requirement already satisfied: pygments>=2.4.0 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (2.18.0)
Requirement already satisfied: stack-data in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.6.3)
Requirement already satisfied: traitlets>=5.13.0 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (5.14.3)
Requirement already satisfied: exceptiongroup in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (1.2.1)
Requirement already satisfied: pexpect>4.3 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (4.9.0)
Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r nrn_requirements.txt (line 11)) (2.0.0)
Requirement already satisfied: pluggy<2.0,>=1.4 in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r nrn_requirements.txt (line 11)) (1.5.0)
Requirement already satisfied: coverage>=5.2.1 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=5.2.1->pytest-cov->-r nrn_requirements.txt (line 12)) (7.5.3)
Requirement already satisfied: parso<0.9.0,>=0.8.3 in ./venv/lib/python3.10/site-packages (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 8)) (0.8.4)
Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9->bokeh<3->-r nrn_requirements.txt (line 7)) (2.1.5)
Requirement already satisfied: ptyprocess>=0.5 in ./venv/lib/python3.10/site-packages (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 8)) (0.7.0)
Requirement already satisfied: wcwidth in ./venv/lib/python3.10/site-packages (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 8)) (0.2.13)
Requirement already satisfied: six>=1.5 in ./venv/lib/python3.10/site-packages (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5)) (1.16.0)
Requirement already satisfied: executing>=1.2.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (2.0.1)
Requirement already satisfied: asttokens>=2.1.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (2.4.1)
Requirement already satisfied: pure-eval in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (0.2.2)
Using cached pip-24.0-py3-none-any.whl (2.1 MB)
Using cached wheel-0.43.0-py3-none-any.whl (65 kB)
Using cached setuptools-70.0.0-py3-none-any.whl (863 kB)
Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB)
Using cached matplotlib-3.9.0-cp310-cp310-macosx_11_0_arm64.whl (7.8 MB)
Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB)
Using cached Cython-0.29.37-py2.py3-none-any.whl (989 kB)
Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB)
Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl (244 kB)
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl (2.2 MB)
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB)
Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl (3.4 MB)
Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB)
Using cached distro-1.9.0-py3-none-any.whl (20 kB)
Installing collected packages: wheel, setuptools, pyparsing, pip, pillow, numpy, mpi4py, kiwisolver, fonttools, distro, cython, cycler, scikit-build, contourpy, bokeh, matplotlib
Attempting uninstall: setuptools
Found existing installation: setuptools 68.2.2
Uninstalling setuptools-68.2.2:
Successfully uninstalled setuptools-68.2.2
Attempting uninstall: pip
Found existing installation: pip 23.3.1
Uninstalling pip-23.3.1:
Successfully uninstalled pip-23.3.1
Attempting uninstall: numpy
Found existing installation: numpy 2.0.0
Uninstalling numpy-2.0.0:
Successfully uninstalled numpy-2.0.0
Successfully installed bokeh-2.4.3 contourpy-1.2.1 cycler-0.12.1 cython-0.29.37 distro-1.9.0 fonttools-4.53.0 kiwisolver-1.4.5 matplotlib-3.9.0 mpi4py-3.1.6 numpy-1.26.4 pillow-10.3.0 pip-24.0 pyparsing-3.1.2 scikit-build-0.17.6 setuptools-70.0.0 wheel-0.43.0
$ source ./venv/bin/activate
$ export PYTHON=${PWD}/venv/bin/python
$ ${PYTHON} --version
Python 3.10.13
$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"
$ export CXX=${CXX:-g++}
$ export CC=${CC:-gcc}
$ brew install flex bison
Warning: flex 2.6.4_2 is already installed and up-to-date.
To reinstall 2.6.4_2, run:
brew reinstall flex
Warning: bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
brew reinstall bison
$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"
$ export INSTALL_DIR=$(pwd)/install
$ echo $LANG
$ echo $LC_ALL
$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")
$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'
$ cmake_args=(-G Ninja)
$ if [[ -n "${sanitizer}" ]]; then
$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))
$ fi
$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})
$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")
$ mkdir build && cd build
$ echo "Building with ${cmake_args[@]}"
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/venv/bin/python
$ cmake .. "${cmake_args[@]}"
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- Sub-module : missing external/coding-conventions : running git submodule update --init
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions'
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/coding-conventions'...
Submodule path 'external/coding-conventions': checked out '3d157f9c8ea94d196a825aaa7f523265e360dc4b'
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123'
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/Random123'...
From https://github.com/BlueBrain/Random123
* branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1'
-- 3rd party project: using Random123 from "external/Random123"
-- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen
Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen'
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/eigen'...
From https://gitlab.com/libeigen/eigen
* branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
-- 3rd party project: using eigen from "external/eigen"
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2")
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6")
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1")
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11'
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/CLI11'...
From https://github.com/CLIUtils/CLI11
* branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2'
-- 3rd party project: using CLI11 from "external/CLI11"
CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Building CoreNEURON
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)")
-- Found Perl: /usr/bin/perl (found version "5.30.3")
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH)
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl
-- CHECKING FOR FLEX/BISON
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0")
-- Adding Flex include path as : /opt/homebrew/opt/flex/include/
-- NMODL_TEST_FORMATTING: OFF
-- NMODL_GIT_HOOKS: OFF
-- NMODL_GIT_COMMIT_HOOKS:
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg
-- NMODL_STATIC_ANALYSIS: OFF
-- NMODL_TEST_STATIC_ANALYSIS: OFF
-- 3rd party project: using eigen from "ext/eigen"
-- 3rd party project: using fmt from "ext/fmt"
-- Version: 10.2.1
-- Build type: Custom
-- 3rd party project: using json from "ext/json"
-- Using the multi-header code from /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/ext/json/include/
-- 3rd party project: using pybind11 from "ext/pybind11"
-- pybind11 v2.12.0
-- Found PythonInterp: /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.6")
-- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- 3rd party project: using spdlog from "ext/spdlog"
-- Build spdlog: 1.13.0
-- Build type: Custom
-- CHECKING FOR PYTHON
-- Found Python: /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/venv/bin/python3.10 (found suitable version "3.10.13", minimum required is "3.8") found components: Interpreter
CMake Warning (dev) at external/nmodl/src/pybind/CMakeLists.txt:27 (configure_file):
configure_file called with unknown argument(s):
@ONLY@
This warning is for project developers. Use -Wno-dev to suppress it.
--
-- Configured NMODL 0.0 (c5ecfea 2024-06-10 16:25:23 +0200)
--
-- You can now build NMODL using:
-- cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------------+--------------------------------------------------------
-- Target | Description
-- --------------------+--------------------------------------------------------
-- test | Run unit tests
-- install | Will install NMODL to: /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/install
-- --------------------+--------------------------------------------------------
-- Build option | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER | /usr/bin/g++
-- COMPILE FLAGS | -O1 -g -openmp-simd
-- Build Type | Custom
-- Python Bindings | OFF
-- Flex | /opt/homebrew/opt/flex/bin/flex
-- Bison | /opt/homebrew/opt/bison/bin/bison
-- Python | /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/venv/bin/python
-- Linked against | ON
-- --------------------+--------------------------------------------------------
-- See documentation : https://github.com/BlueBrain/nmodl/
-- --------------------+--------------------------------------------------------
--
--
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
-- Build option | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER | /usr/bin/g++
-- COMPILE FLAGS | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type | SHARED
-- MPI | ON
-- DYNAMIC | OFF
-- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include
-- OpenMP | ON
-- NMODL PATH | /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/bin/nmodl
-- NMODL FLAGS |
-- GPU Support | OFF
-- Auto Timeout | ON
-- Wrap exp() | OFF
-- SplayTree Queue | ON
-- NetReceive Buffer | ON
-- Caliper | OFF
-- Likwid | OFF
-- Unit Tests | ON
-- Reporting | OFF
-- --------------------+--------------------------------------------------------
--
Extracting link flags from target 'nrngnu', beware that this can be fragile. Got:
Extracting link flags from target 'sparse13', beware that this can be fragile. Got:
Generating link flags from name 'nrnpython', beware that this can be fragile. Got: -lnrnpython
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: -lnrnpython
Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
-- Sub-module : missing /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/catch2 : running git submodule update --init
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2'
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/catch2'...
Submodule path 'external/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
-- Found Python module 'pytest' with version(s): 8.1.1
-- Found Python module 'pytest_cov' with version(s): 5.0.0
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata'
Cloning into '/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/test/rxd/testdata'...
From https://github.com/neuronsimulator/rxdtestdata
* branch 30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD
Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58'
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0")
--
-- Configured NEURON 9.0.0
--
-- You can now build NEURON using:
-- cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
-- Target | Description
-- --------------+--------------------------------------------------------------
-- install | Will install NEURON to: /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/install
-- | Change the install location of NEURON using:
-- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
-- Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER | /usr/bin/gcc
-- CXX COMPILER | /usr/bin/g++
-- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug)
-- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd
-- Shared | ON
-- MPI | ON
-- DYNAMIC | OFF
-- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include
-- LIB | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Python | ON
-- DYNAMIC | OFF
-- MODULE | ON
-- python3.10 (default)
-- EXE | /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/venv/bin/python
-- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10
-- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D | OFF
-- Interviews | OFF
-- CoreNEURON | ON
-- PATH | /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/coreneuron
-- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Tests | ON
-- --------------+--------------------------------------------------------------
-- See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
--
-- Configuring done (26.0s)
-- Generating done (0.2s)
-- Build files have been written to: /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build
$ ccache -z
Statistics zeroed
$ ccache -vs 2>/dev/null
Cache directory: /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/ccache
Config file: /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated: Mon Jun 17 21:08:56 2024
Local storage:
Cache size (GiB): 0.1 / 5.0 ( 2.17%)
Files: 1184
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ cmake --build . --parallel
[0/2] Re-checking globbed directories...
[1/1930] Generating share/nrn/demo/demo.ses
[2/1930] Generating share/nrn/demo/cycle.hoc
[3/1930] Generating share/nrn/demo/dend3.ses
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[7/1930] Generating share/nrn/demo/dend3/control.hoc
[8/1930] Generating share/nrn/demo/dend3/syn3.hoc
[9/1930] Generating share/nrn/demo/dynchan.ses
[10/1930] Generating share/nrn/demo/dynclamp.hoc
[11/1930] Generating share/nrn/demo/dynclamp.ses
[12/1930] Generating share/nrn/demo/hh.hoc
[13/1930] Generating share/nrn/demo/hh.ses
[14/1930] Generating share/nrn/demo/nomodel.hoc
[15/1930] Generating share/nrn/demo/pyramid.nrn
[16/1930] Generating share/nrn/demo/pyramid.ses
[17/1930] Generating share/nrn/demo/reconst.hoc
[18/1930] Generating share/nrn/demo/release.ses
[19/1930] Generating share/nrn/demo/release.hoc
[20/1930] Generating share/nrn/demo/release/camchan.mod
[21/1930] Generating share/nrn/demo/release/cachan1.mod
[22/1930] Generating share/nrn/demo/release/invlfire.mod
[23/1930] Generating share/nrn/demo/release/khhchan.mod
[24/1930] Update hh.mod for CoreNEURON compatibility
[25/1930] Generating share/nrn/demo/release/cabpump.mod
[26/1930] Generating share/nrn/demo/release/capump.mod
[27/1930] Generating share/nrn/demo/release/release.mod
[28/1930] Generating share/nrn/demo/release/nacaex.mod
[29/1930] Generating share/nrn/demo/release/nachan.mod
[30/1930] Generating share/nrn/demo/singhh.ses
[31/1930] Generating share/nrn/demo/singhh.hoc
[32/1930] Generating share/nrn/demo/sync/init.hoc
[33/1930] Generating share/nrn/demo/sync/cell.hoc
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[37/1930] Generating share/nrn/demo/sync/start.ses
[38/1930] Generating share/nrn/demo/singhhchan.hoc
[39/1930] Generating share/nrn/demo/testca.hoc
[40/1930] Generating share/nrn/lib/auditscripts/gettarname
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[42/1930] Generating share/nrn/lib/auditscripts/retrieve.sh
[43/1930] Generating share/nrn/lib/auditscripts/saveaudit
[44/1930] Generating share/nrn/lib/cleanup
[45/1930] Generating share/nrn/lib/auditscripts/hocaudit.sh
[46/1930] Generating share/nrn/lib/helpdict
[47/1930] Generating share/nrn/lib/hoc/atoltool.hoc
[48/1930] Generating share/nrn/lib/hoc/attshape.hoc
[49/1930] Generating share/nrn/lib/hoc/binfo.hoc
[50/1930] Generating share/nrn/lib/hoc/celbild.hoc
[51/1930] Generating share/nrn/lib/hoc/celbild/celbild1.hoc
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[168/1930] Generating share/nrn/lib/nrnunits.lib
[169/1930] Generating share/nrn/lib/nrn.defaults.in
[170/1930] Generating share/nrn/lib/python/neuron/coreneuron.py
[171/1930] Generating share/nrn/lib/prologue.id
[172/1930] Generating share/nrn/lib/python/neuron/__init__.py
[173/1930] Generating share/nrn/lib/python/neuron/config.py
[174/1930] Generating share/nrn/lib/python/neuron/crxd/__init__.py
[175/1930] Generating share/nrn/lib/python/neuron/expect_hocerr.py
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[178/1930] Generating share/nrn/lib/python/neuron/gui2/__init__.py
[179/1930] Generating share/nrn/lib/python/neuron/gui2/config.py
[180/1930] Generating share/nrn/lib/python/neuron/gui2/rangevar.py
[181/1930] Generating share/nrn/lib/python/neuron/gui2/setup_threejs.py
[182/1930] Generating share/nrn/lib/python/neuron/gui2/plotshape.py
[183/1930] Generating share/nrn/lib/python/neuron/gui2/utilities.py
[184/1930] Generating share/nrn/lib/python/neuron/neuroml/__init__.py
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[186/1930] Generating share/nrn/lib/python/neuron/neuroml/metadata.py
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[191/1930] Generating share/nrn/lib/python/neuron/neuroml/morphml.py
[192/1930] Generating share/nrn/lib/python/neuron/nonvint_block_supervisor.py
[193/1930] Generating share/nrn/lib/python/neuron/rxd/__init__.py
[194/1930] Generating share/nrn/lib/python/neuron/rxd/constants.py
[195/1930] Generating share/nrn/lib/python/neuron/rxd/export.py
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[198/1930] Generating share/nrn/lib/python/neuron/rxd/geometry3d/FullJoinMorph.py
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[206/1930] Generating share/nrn/lib/python/neuron/rxd/geometry3d/scalarField.py
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[209/1930] Generating share/nrn/lib/python/neuron/rxd/geometry3d/triangularMesh.py
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[213/1930] Generating share/nrn/lib/python/neuron/rxd/gui.py
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[216/1930] Generating share/nrn/lib/python/neuron/rxd/node.py
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[230/1930] Generating share/nrn/lib/python/neuron/rxdtests/do_test.py
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In file included from /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.cpp:8:
In file included from /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.hpp:17:
In file included from /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/ext/fmt/include/fmt/format.h:41:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/memory:682:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/shared_ptr.h:25:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:57:5: warning: delete called on 'nmodl::utils::Blame' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor]
delete __ptr;
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:318:7: note: in instantiation of member function 'std::default_delete<nmodl::utils::Blame>::operator()' requested here
__ptr_.second()(__tmp);
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:272:19: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::reset' requested here
~unique_ptr() { reset(); }
^
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.cpp:115:26: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::~unique_ptr' requested here
auto blame_printer = utils::make_blame(blame_line);
^
1 warning generated.
[485/1930] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/cfg.cpp.o
[486/1930] -- NMODL : GENERATING C (11) PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/c11.yy:52.1-35: warning: deprecated directive: '%define parser_class_name {CParser}', use '%define api.parser.class {CParser}' [-Wdeprecated]
52 | %define parser_class_name {CParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {CParser}
../../../../../external/nmodl/src/parser/c11.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
[487/1930] Linking CXX static library lib/libspdlog.a
[488/1930] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/string_utils.cpp.o
[489/1930] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/file_library.cpp.o
[490/1930] Generating ../../../../lib/nmodl/__init__.py
[491/1930] Generating ../../../../lib/nmodl/_binwrapper.py
[492/1930] Generating ../../../../lib/nmodl/ast.py
[493/1930] Generating ../../../../lib/nmodl/dsl.py
[494/1930] Generating ../../../../lib/nmodl/ode.py
[495/1930] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/perf_stat.cpp.o
[496/1930] Generating ../../../../lib/nmodl/symtab.py
[497/1930] Generating ../../../../lib/nmodl/visitor.py
[498/1930] Generating ../../../../include/newton/newton.hpp
[499/1930] Generating ../../../../include/crout/crout.hpp
[500/1930] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/table_data.cpp.o
[501/1930] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/__/config/config.cpp.o
[502/1930] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spbuild.cpp.o
[503/1930] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spalloc.cpp.o
[504/1930] -- NMODL : GENERATING NMODL_CORE PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/nmodl.yy:64.1-39: warning: deprecated directive: '%define parser_class_name {NmodlParser}', use '%define api.parser.class {NmodlParser}' [-Wdeprecated]
64 | %define parser_class_name {NmodlParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {NmodlParser}
../../../../../external/nmodl/src/parser/nmodl.yy: warning: 3 shift/reduce conflicts [-Wconflicts-sr]
../../../../../external/nmodl/src/parser/nmodl.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
../../../../../external/nmodl/src/parser/nmodl.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
[505/1930] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spoutput.cpp.o
[506/1930] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spfactor.cpp.o
[507/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/ACG.cpp.o
[508/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Binomial.cpp.o
[509/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/DiscUnif.cpp.o
[510/1930] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spsolve.cpp.o
[511/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Erlang.cpp.o
[512/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Geom.cpp.o
[513/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/isaac64.cpp.o
[514/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/HypGeom.cpp.o
[515/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Isaac64RNG.cpp.o
[516/1930] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/sputils.cpp.o
[517/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/LogNorm.cpp.o
[518/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/MCellRan4RNG.cpp.o
[519/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/mcran4.cpp.o
[520/1930] Linking CXX static library lib/libsparse13.a
[521/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/MLCG.cpp.o
[522/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnisaac.cpp.o
[523/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/NegExp.cpp.o
[524/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Normal.cpp.o
[525/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Poisson.cpp.o
[526/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Rand.cpp.o
[527/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Random.cpp.o
[528/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RndInt.cpp.o
[529/1930] [FLEX][modlunitlexer] Building scanner with flex 2.6.4
[530/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RNG.cpp.o
[531/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Uniform.cpp.o
[532/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Weibull.cpp.o
[533/1930] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[534/1930] [FLEX][nocmodllexer] Building scanner with flex 2.6.4
[535/1930] [BISON][modlunitparser] Building parser with bison 3.8.2
[536/1930] [BISON][ocparser] Building parser with bison 3.8.2
../src/oc/parse.ypp: warning: 108 shift/reduce conflicts [-Wconflicts-sr]
../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[537/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnran123.cpp.o
[538/1930] Linking CXX static library lib/libnrngnu.a
[539/1930] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[540/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/declare.cpp.o
[541/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/consist.cpp.o
[542/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/init.cpp.o
[543/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/io.cpp.o
[544/1930] cd /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[545/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/list.cpp.o
[546/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/kinunit.cpp.o
[547/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/model.cpp.o
[548/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/nrnunit.cpp.o
[549/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/passn.cpp.o
[550/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/symbol.cpp.o
[551/1930] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/json_printer.cpp.o
[552/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units1.cpp.o
[553/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units.cpp.o
[554/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/version.cpp.o
[555/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/lex.cpp.o
[556/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/parse1.cpp.o
[557/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/consist.cpp.o
[558/1930] Linking CXX executable bin/modlunit
[559/1930] Building CXX object external/nmodl/src/pybind/CMakeFiles/pyembed.dir/pyembed.cpp.o
[560/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/deriv.cpp.o
[561/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/discrete.cpp.o
[562/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/init.cpp.o
[563/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/list.cpp.o
[564/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/kinetic.cpp.o
[565/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/noccout.cpp.o
[566/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/io.cpp.o
[567/1930] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/corenrn_parameters.cpp.o
[568/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/netrec_discon.cpp.o
[569/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/parsact.cpp.o
[570/1930] Linking CXX static library lib/libcoreneuron-core.a
[571/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/simultan.cpp.o
[572/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/symbol.cpp.o
[573/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/modlunit/units.cpp.o
[574/1930] Generating ../oc/hocusr.h
[575/1930] cd /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/src/nrniv && true
[576/1930] Generating ../../share/nrn/nrnmain.cpp
[577/1930] Generating ../../include/nrnmpiuse.h
[578/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/solve.cpp.o
[579/1930] Generating ../../include/nrncvode/nrnneosm.h
[580/1930] Generating ../../include/nrnconf.h
[581/1930] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/logger.cpp.o
[582/1930] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o
[583/1930] Linking CXX static library lib/libutil.a
[584/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/version.cpp.o
[585/1930] Linking CXX shared library lib/librxdmath.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[586/1930] -- NMODL : GENERATING NMODL LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/nmodl.ll:503: warning, -s option given but default rule can be matched
[587/1930] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! --
[588/1930] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/diffeq.ll:100: warning, -s option given but default rule can be matched
[589/1930] -- NMODL : GENERATING UNIT LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched
[590/1930] -- NMODL : GENERATING C(11) LEXER WITH FLEX! --
[591/1930] Linking CXX static library lib/libpyembed.a
[592/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o
[593/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o
[594/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o
[595/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/nocpout.cpp.o
[596/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_transform_visitor.cpp.o
[597/1930] Building CXX object external/nmodl/src/pybind/CMakeFiles/pywrapper.dir/wrapper.cpp.o
[598/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpython.cpp.o
[599/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_acc_visitor.cpp.o
[600/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_info.cpp.o
[601/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_hoc.cpp.o
[602/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_compatibility_visitor.cpp.o
[603/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/modtoken.cpp.o
[604/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/token_mapping.cpp.o
[605/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_helper_visitor.cpp.o
[606/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/modl.cpp.o
[607/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_utils.cpp.o
[608/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_utils.cpp.o
[609/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/verbatim_lexer.cpp.o
[610/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/diffeq_base_lexer.cpp.o
[611/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/unit_base_lexer.cpp.o
[612/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_driver.cpp.o
[613/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/c11_base_lexer.cpp.o
[614/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_context.cpp.o
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[617/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c11_driver.cpp.o
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[621/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c/c11_parser.cpp.o
[622/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq/diffeq_parser.cpp.o
[623/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl_driver.cpp.o
[624/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit/unit_parser.cpp.o
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[639/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl/nmodl_parser.cpp.o
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[661/1930] Linking CXX executable bin/nocmodl
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[669/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_marching_cubes.cpp.o
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[674/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_solver_visitor.cpp.o
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[678/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/symtab_visitor.cpp.o
[679/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_intracellular.cpp.o
[680/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_analyse.cpp.o
[681/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_run_for_at_least.cpp.o
[682/1930] Linking CXX static library lib/libvisitor.a
[683/1930] Linking CXX static library lib/libcodegen.a
[684/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generators.cpp.o
[685/1930] Linking CXX executable bin/nmodl
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[699/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_streaming_base.cpp.o
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[702/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd.cpp.o
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[706/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_teamcity.cpp.o
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Translating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/apcount.cpp
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Translating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/expsyn.cpp
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[710/1930] Generating ../nrnoc/exp2syn.cpp
Translating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp
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[712/1930] Generating ../nrnoc/feature.cpp
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Translating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/intfire2.cpp
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Translating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/intfire1.cpp
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Translating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/hh.cpp
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Translating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/intfire4.cpp
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Translating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/oclmp.cpp
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Translating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/passive.cpp
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Translating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/stim.cpp
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Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
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Translating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/syn.cpp
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Translating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/nrnoc/vclmp.cpp
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[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
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/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/src/ivoc/mymath.cpp:2:14: warning: '#pragma FENV_ACCESS' is not supported on this target - ignored [-Wignored-pragmas]
#pragma STDC FENV_ACCESS ON
^
1 warning generated.
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[1224/1930] Linking CXX executable bin/test/nrn-benchmarks
[1225/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod
[1226/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod
[1227/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod
[1228/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod
[1229/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod
[1230/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod
[1231/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod
[1232/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod
[1233/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod
[1234/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc
[1235/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod
[1236/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod
[1237/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod
[1238/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod
[1239/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod
[1240/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod
[1241/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod
[1242/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod
[1243/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod
[1244/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod
[1245/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/atest.mod
[1246/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod
[1247/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod
[1248/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand.mod
[1249/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand_art.mod
[1250/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand_pp.mod
[1251/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata.inc
[1252/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_pp.mod
[1253/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata.mod
[1254/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_ppts.mod
[1255/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_ts.mod
[1256/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod
[1257/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod
[1258/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod
[1259/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod
[1260/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod
[1261/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod
[1262/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod
[1263/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod
[1264/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod
[1265/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod
[1266/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod
[1267/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod
[1268/1930] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_BUILD=0
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
Traceback (most recent call last):
File "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
section = defn.get("tool", {})[tool_name]
KeyError: 'setuptools_scm'
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:167: UserWarning: "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn" is shallow and may cause errors
warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:creating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:creating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:creating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/coreneuron_available.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:creating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:creating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:creating /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:building 'neuron.hoc' extension
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -DCORENRN_BUILD=0=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../
ld: warning: -undefined dynamic_lookup may not work with chained fixups
INFO:root:running build_scripts
INFO:root:creating build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755
[1269/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.inc
[1270/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.mod
[1271/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial_pp.mod
[1272/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/bacur.mod
[1273/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/banocur.mod
[1274/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/fornetcon.mod
[1275/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/green.mod
[1276/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/invlfire.mod
[1277/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/natrans.mod
[1278/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/netmove.mod
[1279/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/noisychan.mod
[1280/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/red.mod
[1281/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/sample.mod
[1282/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/unitstest.mod
[1283/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/version_macros.mod
[1284/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange.mod
[1285/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange2.mod
[1286/1930] Building special[-core] for test group datahandle
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453
cfiles =
Mod files: "./opaque_token.mod" "./ptr.mod"
MODOBJS= ./opaque_token.o ./ptr.o
-> NMODL .././ptr.mod
-> Compiling mod_func.cpp
-> NMODL .././opaque_token.mod
Translating ptr.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp
Notice: Use of POINTER is not thread safe.
Translating opaque_token.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp
Notice: VERBATIM blocks are not thread safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp
=> LINKING shared library "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1287/1930] Generating datahandle/datahandle_tests/test/datahandle/test_1.py
[1288/1930] Generating datahandle/datahandle_tests/test/datahandle/test_token.py
[1289/1930] Linking CXX executable bin/test/hh_sim_cpp
[1290/1930] Linking CXX executable bin/test/netcon_cpp
[1291/1930] Linking CXX executable bin/test/sections_c
[1292/1930] Linking CXX executable bin/test/vclamp_cpp
[1293/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod
[1294/1930] Building special[-core] for test group coverage_tests
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51
cfiles =
Mod files: "./ppxsrc.mod"
MODOBJS= ./ppxsrc.o
-> Compiling mod_func.cpp
-> NMODL .././ppxsrc.mod
Translating ppxsrc.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
=> LINKING shared library "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1295/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod
[1296/1930] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json
[1297/1930] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py
[1298/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
[1299/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
[1300/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod
[1301/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod
[1302/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
[1303/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod
[1304/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
[1305/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
[1306/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
[1307/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod
[1308/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
[1309/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod
[1310/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod
[1311/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod
[1312/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod
[1313/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod
[1314/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod
[1315/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod
[1316/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod
[1317/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
[1318/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod
[1319/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
[1320/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod
[1321/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod
[1322/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod
[1323/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod
[1324/1930] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod
[1325/1930] Building special[-core] for test group parallel
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"
MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
-> NMODL .././gap.mod
-> Compiling mod_func.cpp
-> NMODL .././follower.mod
-> NMODL .././name_clashes.mod
Translating follower.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Thread Safe
Translating name_clashes.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
Translating gap.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
Thread Safe
Thread Safe
-> NMODL .././unitstest.mod
-> NMODL .././version_macros.mod
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
=> LINKING shared library "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1326/1930] Generating parallel/subworld/test/parallel_tests/test_subworld.py
[1327/1930] Building special[-core] for test group pytest
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c
cfiles =
Mod files: "./mcna.mod"
MODOBJS= ./mcna.o
-> Compiling mod_func.cpp
-> NMODL .././mcna.mod
Translating mcna.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
=> LINKING shared library "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1328/1930] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py
[1329/1930] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json
[1330/1930] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py
[1331/1930] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py
[1332/1930] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py
[1333/1930] Generating parallel/bas/test/parallel_tests/test_bas.py
[1334/1930] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py
[1335/1930] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json
[1336/1930] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py
[1337/1930] Generating ../../nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/halfgap.mod
[1338/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
[1339/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod
[1340/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod
[1341/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod
[1342/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod
[1343/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
[1344/1930] Building special[-core] for test group nmodl_tests
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5
cfiles =
Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod"
MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o
-> Compiling mod_func.cpp
-> NMODL .././cadif.mod
-> NMODL .././disc.mod
-> NMODL .././fornetcon.mod
Translating disc.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
Notice: DISCRETE is not thread safe.
Notice: This mechanism cannot be used with CVODE
-> NMODL .././hhwatch.mod
Translating cadif.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Thread Safe
-> NMODL .././k3st.mod
Translating fornetcon.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
Thread Safe
-> NMODL .././table.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
Thread Safe
-> NMODL .././variabletypes.mod
Translating k3st.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
NEURON's CVode method ignores conservation
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Translating table.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
Translating variabletypes.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
=> LINKING shared library "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1345/1930] Generating nmodl_tests/test_table/test/nmodl/test_table.py
[1346/1930] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py
[1347/1930] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py
[1348/1930] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py
[1349/1930] Generating nmodl_tests/test_random/test/nmodl/test_random.py
[1350/1930] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.mod
[1351/1930] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.py
[1352/1930] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py
[1353/1930] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py
[1354/1930] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py
[1355/1930] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py
[1356/1930] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfire.mod
[1357/1930] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfiresha.mod
[1358/1930] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfirestats.mod
[1359/1930] Building special[-core] for test group hoctests
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad
cfiles =
Mod files: "./atest.mod" "./rand.mod" "./rand_art.mod" "./rand_pp.mod" "./sdata.mod" "./sdata_pp.mod" "./sdata_ppts.mod" "./sdata_ts.mod"
MODOBJS= ./atest.o ./rand.o ./rand_art.o ./rand_pp.o ./sdata.o ./sdata_pp.o ./sdata_ppts.o ./sdata_ts.o
-> Compiling mod_func.cpp
-> NMODL .././rand.mod
-> NMODL .././rand_art.mod
-> NMODL .././atest.mod
Translating atest.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp
Thread Safe
-> NMODL .././rand_pp.mod
Translating rand.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp
Thread Safe
Translating rand_art.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp
Thread Safe
-> NMODL .././sdata.mod
-> NMODL .././sdata_pp.mod
Translating rand_pp.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp
Thread Safe
-> NMODL .././sdata_ppts.mod
Translating sdata.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
-> NMODL .././sdata_ts.mod
Translating sdata_pp.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp
Translating sdata_ts.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp
INCLUDEing sdata.inc
Thread Safe
Translating sdata_ppts.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp
INCLUDEing sdata.inc
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp
=> LINKING shared library "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1360/1930] Generating hoctests/test_loadbal_hoc/expect_err.hoc
[1361/1930] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc
[1362/1930] Generating hoctests/test_random_hoc/expect_err.hoc
[1363/1930] Generating hoctests/test_random_hoc/tests/test_random.hoc
[1364/1930] Generating hoctests/test_random_hoc/tests/test_random.json
[1365/1930] Generating hoctests/perf1_hoc/expect_err.hoc
[1366/1930] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc
[1367/1930] Generating hoctests/test1_hoc/expect_err.hoc
[1368/1930] Generating hoctests/test1_hoc/vardimtests/test1.hoc
[1369/1930] Generating hoctests/test2_hoc/expect_err.hoc
[1370/1930] Generating hoctests/test2_hoc/vardimtests/test2.hoc
[1371/1930] Generating hoctests/test3_hoc/expect_err.hoc
[1372/1930] Generating hoctests/test3_hoc/vardimtests/test3.hoc
[1373/1930] Generating hoctests/test4_hoc/expect_err.hoc
[1374/1930] Generating hoctests/test4_hoc/vardimtests/test4.hoc
[1375/1930] Generating hoctests/test5_hoc/expect_err.hoc
[1376/1930] Generating hoctests/test5_hoc/vardimtests/test5.hoc
[1377/1930] Generating hoctests/test6_hoc/expect_err.hoc
[1378/1930] Generating hoctests/test6_hoc/vardimtests/test6.hoc
[1379/1930] Generating hoctests/test7_hoc/expect_err.hoc
[1380/1930] Generating hoctests/test7_hoc/vardimtests/test7.hoc
[1381/1930] Generating hoctests/test8_hoc/expect_err.hoc
[1382/1930] Generating hoctests/test8_hoc/vardimtests/test8.hoc
[1383/1930] Generating hoctests/test9_hoc/expect_err.hoc
[1384/1930] Generating hoctests/test9_hoc/vardimtests/test9.hoc
[1385/1930] Generating hoctests/test_bbss_py/tests/test_bbss.py
[1386/1930] Generating hoctests/test_cvinterp_py/tests/test_cvinterp.py
[1387/1930] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py
[1388/1930] Generating hoctests/test_hocmech_py/tests/test_hocmech.py
[1389/1930] Generating hoctests/test_kschan_py/tests/test_kschan.json
[1390/1930] Generating hoctests/test_kschan_py/tests/test_kschan.py
[1391/1930] Generating hoctests/test_legacy_setpointer_py/tests/test_legacy_setpointer.py
[1392/1930] Generating hoctests/test_mechfunc_py/tests/test_mechfunc.py
[1393/1930] Generating hoctests/test_mechstd_py/tests/test_mechstd.py
[1394/1930] Generating hoctests/test_mode_py/tests/test_mode.py
[1395/1930] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json
[1396/1930] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py
[1397/1930] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py
[1398/1930] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.json
[1399/1930] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.py
[1400/1930] Generating hoctests/test_random_py/tests/test_random.json
[1401/1930] Generating hoctests/test_random_py/tests/test_random.py
[1402/1930] Generating hoctests/test_setdata_py/tests/test_setdata.py
[1403/1930] Generating hoctests/test_shape_py/tests/test_shape.py
[1404/1930] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py
[1405/1930] Generating hoctests/test1_py/vardimtests/test1.py
[1406/1930] Generating hoctests/test2_py/vardimtests/test2.py
[1407/1930] Generating hoctests/test9_py/vardimtests/test9.py
[1408/1930] Building special[-core] for test group external_ringtest_nrn
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295
cfiles =
Mod files: "./halfgap.mod"
MODOBJS= ./halfgap.o
-> Compiling mod_func.cpp
-> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp
=> LINKING shared library "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1409/1930] Generating ../../external_ringtest_nrn/optim_node_order/args.py
[1410/1930] Generating ../../external_ringtest_nrn/optim_node_order/cell.hoc
[1411/1930] Generating ../../external_ringtest_nrn/optim_node_order/celluniform.hoc
[1412/1930] Generating ../../external_ringtest_nrn/optim_node_order/commonutils.py
[1413/1930] Generating ../../external_ringtest_nrn/optim_node_order/ranparm.py
[1414/1930] Generating ../../external_ringtest_nrn/optim_node_order/ring.py
[1415/1930] Generating ../../external_ringtest_nrn/optim_node_order/ringtest.py
[1416/1930] Generating ../../external_ringtest_nrn/optim_node_order/ringuniform.py
[1417/1930] Generating ../../external_ringtest_nrn/optim_node_order/settings.py
[1418/1930] Generating ../../external_ringtest_nrn/optim_node_order/test_optimize_node_order.py
[1419/1930] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"
MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
-> NMODL ../cabpump.mod
-> Compiling mod_func.cpp
-> NMODL ../camchan.mod
-> NMODL ../cachan1.mod
Translating cachan1.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Thread Safe
-> NMODL ../capump.mod
Translating camchan.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
Thread Safe
-> NMODL ../invlfire.mod
Translating cabpump.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Translating capump.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
Thread Safe
-> NMODL ../khhchan.mod
-> NMODL ../nacaex.mod
Translating nacaex.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
Translating invlfire.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
Thread Safe
-> NMODL ../nachan.mod
-> NMODL ../release.mod
Translating khhchan.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Translating release.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Translating nachan.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
=> LINKING shared library "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1420/1930] Building special[-core] for test group pytest_coreneuron
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"
MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././follower.mod
-> NMODL .././gap.mod
-> NMODL .././name_clashes.mod
Translating follower.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Thread Safe
Translating gap.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
Thread Safe
Translating name_clashes.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
-> NMODL .././unitstest.mod
-> NMODL .././version_macros.mod
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
=> LINKING shared library "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1421/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py
[1422/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py
[1423/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py
[1424/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py
[1425/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py
[1426/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_coreneuron_configuration.py
[1427/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py
[1428/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py
[1429/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_imem.py
[1430/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py
[1431/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py
[1432/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py
[1433/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py
[1434/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py
[1435/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py
[1436/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py
[1437/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json
[1438/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py
[1439/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py
[1440/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py
[1441/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py
[1442/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py
[1443/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py
[1444/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py
[1445/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py
[1446/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py
[1447/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py
[1448/1930] Building special[-core] for test group external_ringtest
/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff
cfiles =
Mod files: "./halfgap.mod"
MODOBJS= ./halfgap.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
Thread Safe
-> Compiling /Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
=> LINKING shared library "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable "/Users/gitlab-runner/builds/3/P217466/J1322286/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1449/1930] Generating ../../external_ringtest/neuron/args.py
[1450/1930] Generating ../../external_ringtest/neuron/cell.hoc
[1451/1930] Generating ../../external_ringtest/neuron/celluniform.hoc
[1452/1930] Generating ../../external_ringtest/neuron/commonutils.py
[1453/1930] Generating ../../external_ringtest/neuron/ranparm.py
[1454/1930] Generating ../../external_ringtest/neuron/ring.py
[1455/1930] Generating ../../external_ringtest/neuron/ringtest.py
[1456/1930] Generating ../../external_ringtest/neuron/ringuniform.py
[1457/1930] Generating ../../external_ringtest/neuron/settings.py
[1458/1930] Generating ../../external_ringtest/neuron/test_optimize_node_order.py
[1459/1930] Generating ../../external_ringtest/neuron_mpi/args.py
[1460/1930] Generating ../../external_ringtest/neuron_mpi/cell.hoc
[1461/1930] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc
[1462/1930] Generating ../../external_ringtest/neuron_mpi/commonutils.py
[1463/1930] Generating ../../external_ringtest/neuron_mpi/ranparm.py
[1464/1930] Generating ../../external_ringtest/neuron_mpi/ring.py
[1465/1930] Generating ../../external_ringtest/neuron_mpi/ringuniform.py
[1466/1930] Generating ../../external_ringtest/neuron_mpi/ringtest.py
[1467/1930] Generating ../../external_ringtest/neuron_mpi/settings.py
[1468/1930] Generating ../../external_ringtest/neuron_mpi/test_optimize_node_order.py
[1469/1930] Generating ../../external_ringtest/neuron_mpi_python/args.py
[1470/1930] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc
[1471/1930] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc
[1472/1930] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py
[1473/1930] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py
[1474/1930] Generating ../../external_ringtest/neuron_mpi_python/ring.py
[1475/1930] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py
[1476/1930] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py
[1477/1930] Generating ../../external_ringtest/neuron_mpi_python/test_optimize_node_order.py
[1478/1930] Generating ../../external_ringtest/neuron_mpi_python/settings.py
[1479/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py
[1480/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc
[1481/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc
[1482/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py
[1483/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py
[1484/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py
[1485/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py
[1486/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/test_optimize_node_order.py
[1487/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py
[1488/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py
[1489/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py
[1490/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc
[1491/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py
[1492/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc
[1493/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py
[1494/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py
[1495/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py
[1496/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py
[1497/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py
[1498/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/test_optimize_node_order.py
[1499/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc
[1500/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py
[1501/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc
[1502/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py
[1503/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py
[1504/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py
[1505/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py
[1506/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py
[1507/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py
[1508/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/test_optimize_node_order.py
[1509/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc
[1510/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py
[1511/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc
[1512/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py
[1513/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py
[1514/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py
[1515/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py
[1516/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py
[1517/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py
[1518/1930] Generating ../../e
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