Created
December 8, 2023 16:19
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/178789 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2635.
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1702045829:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1702045829:resolve_secrets [0Ksection_start:1702045829:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3666367630, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 178789, build ref , job ID 1072349 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1072349_PROD_P2160_CP1_C1 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1936243 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J1072349_PROD_P2160_CP1_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789 --ntasks=2 --jobid=1936243 --cpus-per-task=8 --mem=76G | |
| section_end:1702045832:prepare_executor [0Ksection_start:1702045832:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i4n28 via bbpv1.epfl.ch... | |
| section_end:1702045842:prepare_script [0Ksection_start:1702045842:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1702045843:get_sources [0Ksection_start:1702045843:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=29932 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1702045849:restore_cache [0Ksection_start:1702045849:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1072348)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=30636 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1072348 responseStatus[0;m=200 OK token[0;m=64_zVssL | |
| section_end:1702045850:download_artifacts [0Ksection_start:1702045850:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072349/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072349/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072349/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072349/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072349/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072349/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789/J1072349_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/u4us3s7btn5uzg7kd6wiwiqlzttpqezu | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1936243/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1936243/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Fri Dec 8 15:30:54 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (91.58 %) | |
| Files: 15004 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - t6t4gwo neuron@develop%oneapi@2022.2.1~caliper~codegenopt+coreneuron~gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
| [^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
| [^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
| [^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] qk754fs ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| - eokjmbo ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 72vpm3g ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f,474b58c arch=linux-rhel7-skylake | |
| [^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] u4us3s7 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] glx4cfn ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] uucrzmi ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2zoh6fg ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a53pqvu ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ua7apk4 ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] oumzlg3 ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] yqakowj ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
| [+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-bvghnw (external hpe-mpi-2.25.hmpt-qk754fsip5huicz34oar3tlywrt5q2hf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| ==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-72vpm3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-glx4cf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_gcc-12.2.0-skylake/nmodl-develop-u4us3s | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_gcc-12.2.0-skylake/libsonata-report-develop-eokjmb | |
| ==> Installing neuron-develop-t6t4gwogmackm3sztoiv7yazd7abg4au | |
| ==> No binary for neuron-develop-t6t4gwogmackm3sztoiv7yazd7abg4au found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-t6t4gwogmackm3sztoiv7yazd7abg4au | |
| Fetch: 22.55s. Build: 30m 52.04s. Total: 31m 14.60s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_oneapi-2022.2.1-skylake/neuron-develop-t6t4gw | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be t6t4gwogmackm3sztoiv7yazd7abg4au | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1936243/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1936243/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Fri Dec 8 16:04:59 2023 | |
| Hits: 792 / 861 (91.99 %) | |
| Direct: 17 / 865 (1.97 %) | |
| Preprocessed: 775 / 847 (91.50 %) | |
| Misses: 69 | |
| Direct: 848 | |
| Preprocessed: 72 | |
| Uncacheable: 1144 | |
| Primary storage: | |
| Hits: 809 / 1729 (46.79 %) | |
| Misses: 920 | |
| Cache size (GB): 0.47 / 0.51 (91.70 %) | |
| Files: 15326 | |
| Cleanups: 2 | |
| Uncacheable: | |
| Autoconf compile/link: 5 | |
| Called for linking: 1126 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 8 | |
| Preprocessing failed: 1 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1702047902:step_script [0Ksection_start:1702047902:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=79132 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1702047923:archive_cache [0Ksection_start:1702047923:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=79518 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1072349 responseStatus[0;m=201 Created token[0;m=64_zVssL | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=79561 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1072349 responseStatus[0;m=201 Created token[0;m=64_zVssL | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=79603 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1072349 responseStatus[0;m=201 Created token[0;m=64_zVssL | |
| section_end:1702047925:upload_artifacts_on_success [0Ksection_start:1702047925:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1702047926:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1702045830:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1702045830:resolve_secrets [0Ksection_start:1702045830:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3933775339, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 178789, build ref , job ID 1072351 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1072351_PROD_P2160_CP3_C14 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1936245 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J1072351_PROD_P2160_CP3_C14 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789 --ntasks=2 --jobid=1936245 --cpus-per-task=8 --mem=76G | |
| section_end:1702045832:prepare_executor [0Ksection_start:1702045832:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i4n28 via bbpv1.epfl.ch... | |
| section_end:1702045842:prepare_script [0Ksection_start:1702045842:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1702045843:get_sources [0Ksection_start:1702045843:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=29873 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1702045849:restore_cache [0Ksection_start:1702045849:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1072348)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=30555 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1072348 responseStatus[0;m=200 OK token[0;m=64_Yk-Bq | |
| section_end:1702045850:download_artifacts [0Ksection_start:1702045850:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072351/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072351/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072351/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072351/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072351/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072351/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789/J1072351_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/u4us3s7btn5uzg7kd6wiwiqlzttpqezu | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1936245/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1936245/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Fri Dec 8 15:30:54 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (92.37 %) | |
| Files: 16298 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - qkejqrc neuron@develop%nvhpc@23.1~caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
| [^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
| [^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
| [^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] qk754fs ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| - eokjmbo ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 72vpm3g ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f,474b58c arch=linux-rhel7-skylake | |
| [^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] u4us3s7 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] glx4cfn ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] uucrzmi ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2zoh6fg ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a53pqvu ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ua7apk4 ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] oumzlg3 ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] yqakowj ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
| [+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-bvghnw (external hpe-mpi-2.25.hmpt-qk754fsip5huicz34oar3tlywrt5q2hf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| ==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-72vpm3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_gcc-12.2.0-skylake/libsonata-report-develop-eokjmb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-glx4cf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_gcc-12.2.0-skylake/nmodl-develop-u4us3s | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk | |
| ==> Installing neuron-develop-qkejqrcf6rrk5ifco7o5cehut4iz6wxe | |
| ==> No binary for neuron-develop-qkejqrcf6rrk5ifco7o5cehut4iz6wxe found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-qkejqrcf6rrk5ifco7o5cehut4iz6wxe | |
| Fetch: 20.72s. Build: 50m 41.04s. Total: 51m 1.76s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_nvhpc-23.1-skylake/neuron-develop-qkejqr | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be qkejqrcf6rrk5ifco7o5cehut4iz6wxe | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1936245/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1936245/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Fri Dec 8 16:24:39 2023 | |
| Hits: 791 / 910 (86.92 %) | |
| Direct: 17 / 864 (1.97 %) | |
| Preprocessed: 774 / 846 (91.49 %) | |
| Misses: 119 | |
| Direct: 847 | |
| Preprocessed: 72 | |
| Uncacheable: 109 | |
| Primary storage: | |
| Hits: 808 / 1727 (46.79 %) | |
| Misses: 919 | |
| Cache size (GB): 0.45 / 0.51 (88.73 %) | |
| Files: 15905 | |
| Cleanups: 5 | |
| Uncacheable: | |
| Autoconf compile/link: 5 | |
| Called for linking: 90 | |
| Called for preprocessing: 2 | |
| Compilation failed: 3 | |
| No input file: 8 | |
| Preprocessing failed: 1 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1702049080:step_script [0Ksection_start:1702049080:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=128898 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1702049100:archive_cache [0Ksection_start:1702049100:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=129951 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1072351 responseStatus[0;m=201 Created token[0;m=64_Yk-Bq | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=129990 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1072351 responseStatus[0;m=201 Created token[0;m=64_Yk-Bq | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=130032 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1072351 responseStatus[0;m=201 Created token[0;m=64_Yk-Bq | |
| section_end:1702049102:upload_artifacts_on_success [0Ksection_start:1702049102:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1702049103:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1702045831:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1702045831:resolve_secrets [0Ksection_start:1702045831:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3463685493, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 178789, build ref , job ID 1072353 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1072353_PROD_P2160_CP5_C16 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1936247 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J1072353_PROD_P2160_CP5_C16 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789 --ntasks=2 --jobid=1936247 --cpus-per-task=8 --mem=76G | |
| section_end:1702045832:prepare_executor [0Ksection_start:1702045832:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i4n30 via bbpv1.epfl.ch... | |
| section_end:1702045836:prepare_script [0Ksection_start:1702045836:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1702045836:get_sources [0Ksection_start:1702045836:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=287979 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1702045843:restore_cache [0Ksection_start:1702045843:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1072348)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=288433 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1072348 responseStatus[0;m=200 OK token[0;m=64_PYhE3 | |
| section_end:1702045844:download_artifacts [0Ksection_start:1702045844:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072353/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072353/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072353/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072353/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072353/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072353/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789/J1072353_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/u4us3s7btn5uzg7kd6wiwiqlzttpqezu | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1936247/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1936247/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Fri Dec 8 15:30:48 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.45 / 0.51 (88.72 %) | |
| Files: 15455 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^caliper+cuda cuda_arch=70 | |
| [+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - kshit76 neuron@develop%nvhpc@23.1+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] jdv6mlw ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] 5floujd ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7yt5klx ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake | |
| [^] zttduab ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake | |
| [^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
| [^] ja6blio ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] 3gsobub ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
| [^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
| [^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] qk754fs ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| - eokjmbo ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 72vpm3g ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f,474b58c arch=linux-rhel7-skylake | |
| [^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] u4us3s7 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] glx4cfn ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] uucrzmi ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2zoh6fg ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a53pqvu ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ua7apk4 ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] oumzlg3 ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] yqakowj ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-bvghnw (external hpe-mpi-2.25.hmpt-qk754fsip5huicz34oar3tlywrt5q2hf) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
| [+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
| [+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| ==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-5flouj | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-72vpm3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-glx4cf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-jdv6ml | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_gcc-12.2.0-skylake/nmodl-develop-u4us3s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_gcc-12.2.0-skylake/libsonata-report-develop-eokjmb | |
| ==> Installing neuron-develop-kshit76rl4ypafhguozwtq6zpp4tyuc4 | |
| ==> No binary for neuron-develop-kshit76rl4ypafhguozwtq6zpp4tyuc4 found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-kshit76rl4ypafhguozwtq6zpp4tyuc4 | |
| Fetch: 18.94s. Build: 1h 20m 51.35s. Total: 1h 21m 10.29s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_nvhpc-23.1-skylake/neuron-develop-kshit7 | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be kshit76rl4ypafhguozwtq6zpp4tyuc4 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1936247/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1936247/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Fri Dec 8 16:54:45 2023 | |
| Hits: 791 / 920 (85.98 %) | |
| Direct: 17 / 866 (1.96 %) | |
| Preprocessed: 774 / 848 (91.27 %) | |
| Misses: 129 | |
| Direct: 849 | |
| Preprocessed: 74 | |
| Uncacheable: 111 | |
| Primary storage: | |
| Hits: 808 / 1731 (46.68 %) | |
| Misses: 923 | |
| Cache size (GB): 0.46 / 0.51 (88.96 %) | |
| Files: 15895 | |
| Cleanups: 2 | |
| Uncacheable: | |
| Autoconf compile/link: 5 | |
| Called for linking: 92 | |
| Called for preprocessing: 2 | |
| Compilation failed: 3 | |
| No input file: 8 | |
| Preprocessing failed: 1 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1702050886:step_script [0Ksection_start:1702050886:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=71648 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1702050907:archive_cache [0Ksection_start:1702050907:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=76903 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1072353 responseStatus[0;m=201 Created token[0;m=64_PYhE3 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=76950 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1072353 responseStatus[0;m=201 Created token[0;m=64_PYhE3 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=77047 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1072353 responseStatus[0;m=201 Created token[0;m=64_PYhE3 | |
| section_end:1702050909:upload_artifacts_on_success [0Ksection_start:1702050909:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1702050910:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1702045831:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1702045831:resolve_secrets [0Ksection_start:1702045831:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor357427520, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 178789, build ref , job ID 1072354 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1072354_PROD_P2160_CP6_C17 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1936248 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J1072354_PROD_P2160_CP6_C17 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789 --ntasks=2 --jobid=1936248 --cpus-per-task=8 --mem=76G | |
| section_end:1702045835:prepare_executor [0Ksection_start:1702045835:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i4n30 via bbpv1.epfl.ch... | |
| section_end:1702045839:prepare_script [0Ksection_start:1702045839:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1702045840:get_sources [0Ksection_start:1702045840:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=288314 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1702045846:restore_cache [0Ksection_start:1702045846:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1072348)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=289632 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1072348 responseStatus[0;m=200 OK token[0;m=64_Eiyst | |
| section_end:1702045847:download_artifacts [0Ksection_start:1702045847:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072354/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072354/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072354/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072354/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072354/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072354/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789/J1072354_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/u4us3s7btn5uzg7kd6wiwiqlzttpqezu | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1936248/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1936248/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Fri Dec 8 15:30:51 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (92.62 %) | |
| Files: 16003 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^caliper+cuda cuda_arch=70 | |
| [+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - phgmbpz neuron@develop%nvhpc@23.1+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] jdv6mlw ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] 5floujd ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7yt5klx ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake | |
| [^] zttduab ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake | |
| [^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
| [^] ja6blio ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] 3gsobub ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
| [^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
| [^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] qk754fs ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| - eokjmbo ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 72vpm3g ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f,474b58c arch=linux-rhel7-skylake | |
| [^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] u4us3s7 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] glx4cfn ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] uucrzmi ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2zoh6fg ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a53pqvu ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ua7apk4 ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] oumzlg3 ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] yqakowj ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-bvghnw (external hpe-mpi-2.25.hmpt-qk754fsip5huicz34oar3tlywrt5q2hf) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
| [+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
| [+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| ==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-5flouj | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-72vpm3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| ==> Installing libsonata-report-develop-eokjmboykth2wmse7tz35stlwymxvqwm | |
| ==> No binary for libsonata-report-develop-eokjmboykth2wmse7tz35stlwymxvqwm found: installing from source | |
| ==> No patches needed for libsonata-report | |
| ==> libsonata-report: Executing phase: 'cmake' | |
| ==> libsonata-report: Executing phase: 'build' | |
| ==> libsonata-report: Executing phase: 'install' | |
| ==> libsonata-report: Successfully installed libsonata-report-develop-eokjmboykth2wmse7tz35stlwymxvqwm | |
| Fetch: 2.46s. Build: 5.42s. Total: 7.88s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_gcc-12.2.0-skylake/libsonata-report-develop-eokjmb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-glx4cf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-jdv6ml | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_gcc-12.2.0-skylake/nmodl-develop-u4us3s | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
| ==> Installing neuron-develop-phgmbpzssdge3mazeox34kwq44ngpsqg | |
| ==> No binary for neuron-develop-phgmbpzssdge3mazeox34kwq44ngpsqg found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-phgmbpzssdge3mazeox34kwq44ngpsqg | |
| Fetch: 20.93s. Build: 1h 21m 21.10s. Total: 1h 21m 42.02s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_nvhpc-23.1-skylake/neuron-develop-phgmbp | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be phgmbpzssdge3mazeox34kwq44ngpsqg | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1936248/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1936248/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Fri Dec 8 16:55:15 2023 | |
| Hits: 801 / 942 (85.03 %) | |
| Direct: 41 / 888 (4.62 %) | |
| Preprocessed: 760 / 846 (89.83 %) | |
| Misses: 141 | |
| Direct: 847 | |
| Preprocessed: 86 | |
| Uncacheable: 134 | |
| Primary storage: | |
| Hits: 842 / 1775 (47.44 %) | |
| Misses: 933 | |
| Cache size (GB): 0.47 / 0.51 (90.90 %) | |
| Files: 15904 | |
| Cleanups: 4 | |
| Uncacheable: | |
| Autoconf compile/link: 5 | |
| Called for linking: 105 | |
| Called for preprocessing: 2 | |
| Compilation failed: 3 | |
| No input file: 18 | |
| Preprocessing failed: 1 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1702050916:step_script [0Ksection_start:1702050916:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=78935 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1702050935:archive_cache [0Ksection_start:1702050935:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=83501 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1072354 responseStatus[0;m=201 Created token[0;m=64_Eiyst | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=83625 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1072354 responseStatus[0;m=201 Created token[0;m=64_Eiyst | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=83794 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1072354 responseStatus[0;m=201 Created token[0;m=64_Eiyst | |
| section_end:1702050937:upload_artifacts_on_success [0Ksection_start:1702050937:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1702050938:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1702045393:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1702045393:resolve_secrets [0Ksection_start:1702045393:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor249978735, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 178789, build ref , job ID 1072348 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1072348_PROD_P2160_CP1_C1 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1936218 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J1072348_PROD_P2160_CP1_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789 --ntasks=2 --jobid=1936218 --cpus-per-task=8 --mem=76G | |
| section_end:1702045395:prepare_executor [0Ksection_start:1702045395:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i4n28 via bbpv1.epfl.ch... | |
| section_end:1702045399:prepare_script [0Ksection_start:1702045399:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1702045400:get_sources [0Ksection_start:1702045400:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=19150 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1702045405:restore_cache [0Ksection_start:1702045405:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for spack_setup (1072346)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=19267 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1072346 responseStatus[0;m=200 OK token[0;m=64_xFs9n | |
| section_end:1702045406:download_artifacts [0Ksection_start:1702045406:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072348/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072348/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072348/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072348/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072348/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072348/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/J1072346/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P178789/J1072348_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1936218/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1936218/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Fri Dec 8 15:23:41 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.45 / 0.51 (87.71 %) | |
| Files: 1003 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - u4us3s7 nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] uucrzmi ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d7dkmvv ^py-flit-core@3.7.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2zoh6fg ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a53pqvu ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6tqbi2i ^py-setuptools-scm@7.0.5%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c564cvo ^py-typing-extensions@4.8.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] oumzlg3 ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] yqakowj ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-flit-core-3.7.1-d7dkmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-typing-extensions-4.8.0-c564cv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-scm-7.0.5-6tqbi2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm | |
| ==> Installing nmodl-develop-u4us3s7btn5uzg7kd6wiwiqlzttpqezu | |
| ==> No binary for nmodl-develop-u4us3s7btn5uzg7kd6wiwiqlzttpqezu found: installing from source | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-develop-u4us3s7btn5uzg7kd6wiwiqlzttpqezu | |
| Fetch: 1m 2.35s. Build: 2m 51.12s. Total: 3m 53.47s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178789/software/install_gcc-12.2.0-skylake/nmodl-develop-u4us3s | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be u4us3s7btn5uzg7kd6wiwiqlzttpqezu | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1936218/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1936218/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Fri Dec 8 15:30:01 2023 | |
| Hits: 123 / 135 (91.11 %) | |
| Direct: 27 / 135 (20.00 %) | |
| Preprocessed: 96 / 108 (88.89 %) | |
| Misses: 12 | |
| Direct: 108 | |
| Preprocessed: 12 | |
| Uncacheable: 25 | |
| Primary storage: | |
| Hits: 150 / 270 (55.56 %) | |
| Misses: 120 | |
| Cache size (GB): 0.46 / 0.51 (89.83 %) | |
| Files: 897 | |
| Cleanups: 2 | |
| Uncacheable: | |
| Called for linking: 24 | |
| No input file: 1 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1702045802:step_script [0Ksection_start:1702045802:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=27660 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1702045823:archive_cache [0Ksection_start:1702045823:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=28031 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1072348 responseStatus[0;m=201 Created token[0;m=64_xFs9n | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=28070 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1072348 responseStatus[0;m=201 Created token[0;m=64_xFs9n | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=28094 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1072348 responseStatus[0;m=201 Created token[0;m=64_xFs9n | |
| section_end:1702045825:upload_artifacts_on_success [0Ksection_start:1702045825:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1702045825:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m | |
| [0K on macos-arm64 vGzz-bdp[0;m | |
| section_start:1702045275:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1702045275:resolve_secrets [0Ksection_start:1702045275:prepare_executor [0K[0K[36;1mPreparing the "shell" executor[0;m[0;m | |
| [0KUsing Shell executor...[0;m | |
| section_end:1702045275:prepare_executor [0Ksection_start:1702045275:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on bbpmacglr01.bbp.epfl.ch... | |
| section_end:1702045276:prepare_script [0Ksection_start:1702045276:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mFetching changes with git depth set to 20...[0;m | |
| Initialized empty Git repository in /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/.git/ | |
| [32;1mCreated fresh repository.[0;m | |
| [32;1mChecking out 764e148c as update_nmodl_submodule...[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1702045277:get_sources [0Ksection_start:1702045277:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-update_nmodl_submodule-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=47297 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
| No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1702045279:restore_cache [0Ksection_start:1702045279:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ real_python=$(python3 resolve_shim.py)[0;m | |
| [32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m | |
| python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.8/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python | |
| [32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m | |
| [32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m | |
| Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (22.2.2) | |
| Collecting pip | |
| Using cached pip-23.3.1-py3-none-any.whl (2.1 MB) | |
| Collecting wheel | |
| Using cached wheel-0.42.0-py3-none-any.whl (65 kB) | |
| Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (65.4.1) | |
| Collecting setuptools | |
| Using cached setuptools-69.0.2-py3-none-any.whl (819 kB) | |
| Collecting setuptools_scm | |
| Using cached setuptools_scm-8.0.4-py3-none-any.whl (42 kB) | |
| Collecting scikit-build | |
| Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB) | |
| Collecting matplotlib | |
| Using cached matplotlib-3.8.2-cp310-cp310-macosx_11_0_arm64.whl (7.5 MB) | |
| Collecting bokeh<3 | |
| Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB) | |
| Collecting ipython | |
| Using cached ipython-8.18.1-py3-none-any.whl (808 kB) | |
| Collecting cython<3 | |
| Using cached Cython-0.29.36-py2.py3-none-any.whl (988 kB) | |
| Collecting packaging | |
| Using cached packaging-23.2-py3-none-any.whl (53 kB) | |
| Collecting pytest | |
| Using cached pytest-7.4.3-py3-none-any.whl (325 kB) | |
| Collecting pytest-cov | |
| Using cached pytest_cov-4.1.0-py3-none-any.whl (21 kB) | |
| Collecting mpi4py | |
| Using cached mpi4py-3.1.5-cp310-cp310-macosx_12_0_arm64.whl | |
| Collecting numpy | |
| Using cached numpy-1.26.2-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB) | |
| Collecting find_libpython | |
| Using cached find_libpython-0.3.1-py3-none-any.whl (8.4 kB) | |
| Collecting typing-extensions | |
| Using cached typing_extensions-4.8.0-py3-none-any.whl (31 kB) | |
| Collecting tomli>=1 | |
| Using cached tomli-2.0.1-py3-none-any.whl (12 kB) | |
| Collecting distro | |
| Using cached distro-1.8.0-py3-none-any.whl (20 kB) | |
| Collecting cycler>=0.10 | |
| Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB) | |
| Collecting fonttools>=4.22.0 | |
| Using cached fonttools-4.46.0-cp310-cp310-macosx_10_9_universal2.whl (2.8 MB) | |
| Collecting contourpy>=1.0.1 | |
| Using cached contourpy-1.2.0-cp310-cp310-macosx_11_0_arm64.whl (242 kB) | |
| Collecting pillow>=8 | |
| Using cached Pillow-10.1.0-cp310-cp310-macosx_11_0_arm64.whl (3.3 MB) | |
| Collecting python-dateutil>=2.7 | |
| Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) | |
| Collecting pyparsing>=2.3.1 | |
| Using cached pyparsing-3.1.1-py3-none-any.whl (103 kB) | |
| Collecting kiwisolver>=1.3.1 | |
| Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB) | |
| Collecting PyYAML>=3.10 | |
| Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl (169 kB) | |
| Collecting tornado>=5.1 | |
| Using cached tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl (433 kB) | |
| Collecting Jinja2>=2.9 | |
| Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB) | |
| Collecting pygments>=2.4.0 | |
| Using cached pygments-2.17.2-py3-none-any.whl (1.2 MB) | |
| Collecting prompt-toolkit<3.1.0,>=3.0.41 | |
| Using cached prompt_toolkit-3.0.41-py3-none-any.whl (385 kB) | |
| Collecting traitlets>=5 | |
| Using cached traitlets-5.14.0-py3-none-any.whl (85 kB) | |
| Collecting matplotlib-inline | |
| Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB) | |
| Collecting pexpect>4.3 | |
| Using cached pexpect-4.9.0-py2.py3-none-any.whl (63 kB) | |
| Collecting jedi>=0.16 | |
| Using cached jedi-0.19.1-py2.py3-none-any.whl (1.6 MB) | |
| Collecting decorator | |
| Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB) | |
| Collecting exceptiongroup | |
| Using cached exceptiongroup-1.2.0-py3-none-any.whl (16 kB) | |
| Collecting stack-data | |
| Using cached stack_data-0.6.3-py3-none-any.whl (24 kB) | |
| Collecting pluggy<2.0,>=0.12 | |
| Using cached pluggy-1.3.0-py3-none-any.whl (18 kB) | |
| Collecting iniconfig | |
| Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB) | |
| Collecting coverage[toml]>=5.2.1 | |
| Using cached coverage-7.3.2-cp310-cp310-macosx_11_0_arm64.whl (200 kB) | |
| Collecting parso<0.9.0,>=0.8.3 | |
| Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB) | |
| Collecting MarkupSafe>=2.0 | |
| Using cached MarkupSafe-2.1.3-cp310-cp310-macosx_10_9_universal2.whl (17 kB) | |
| Collecting ptyprocess>=0.5 | |
| Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) | |
| Collecting wcwidth | |
| Using cached wcwidth-0.2.12-py2.py3-none-any.whl (34 kB) | |
| Collecting six>=1.5 | |
| Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) | |
| Collecting pure-eval | |
| Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB) | |
| Collecting executing>=1.2.0 | |
| Using cached executing-2.0.1-py2.py3-none-any.whl (24 kB) | |
| Collecting asttokens>=2.1.0 | |
| Using cached asttokens-2.4.1-py2.py3-none-any.whl (27 kB) | |
| Installing collected packages: wcwidth, pure-eval, ptyprocess, find_libpython, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, executing, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython | |
| Attempting uninstall: setuptools | |
| Found existing installation: setuptools 65.4.1 | |
| Uninstalling setuptools-65.4.1: | |
| Successfully uninstalled setuptools-65.4.1 | |
| Attempting uninstall: pip | |
| Found existing installation: pip 22.2.2 | |
| Uninstalling pip-22.2.2: | |
| Successfully uninstalled pip-22.2.2 | |
| Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.3 PyYAML-6.0.1 asttokens-2.4.1 bokeh-2.4.3 contourpy-1.2.0 coverage-7.3.2 cycler-0.12.1 cython-0.29.36 decorator-5.1.1 distro-1.8.0 exceptiongroup-1.2.0 executing-2.0.1 find_libpython-0.3.1 fonttools-4.46.0 iniconfig-2.0.0 ipython-8.18.1 jedi-0.19.1 kiwisolver-1.4.5 matplotlib-3.8.2 matplotlib-inline-0.1.6 mpi4py-3.1.5 numpy-1.26.2 packaging-23.2 parso-0.8.3 pexpect-4.9.0 pillow-10.1.0 pip-23.3.1 pluggy-1.3.0 prompt-toolkit-3.0.41 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.17.2 pyparsing-3.1.1 pytest-7.4.3 pytest-cov-4.1.0 python-dateutil-2.8.2 scikit-build-0.17.6 setuptools-69.0.2 setuptools_scm-8.0.4 six-1.16.0 stack-data-0.6.3 tomli-2.0.1 tornado-6.4 traitlets-5.14.0 typing-extensions-4.8.0 wcwidth-0.2.12 wheel-0.42.0 | |
| [32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m | |
| Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl' | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/nmodl'... | |
| From https://github.com/BlueBrain/nmodl | |
| * branch 3136d2184254799cb581346c26fb034e885aa812 -> FETCH_HEAD | |
| Submodule path 'external/nmodl': checked out '3136d2184254799cb581346c26fb034e885aa812' | |
| Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions' | |
| Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2' | |
| Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11' | |
| Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen' | |
| Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt' | |
| Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json' | |
| Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11' | |
| Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog' | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/nmodl/ext/catch2'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/nmodl/ext/cli11'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/nmodl/ext/eigen'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/nmodl/ext/fmt'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/nmodl/ext/json'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/nmodl/ext/pybind11'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/nmodl/ext/spdlog'... | |
| From https://github.com/BlueBrain/hpc-coding-conventions | |
| * branch f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD | |
| Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d' | |
| From https://github.com/catchorg/Catch2 | |
| * branch 3f0283de7a9c43200033da996ff9093be3ac84dc -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/catch2': checked out '3f0283de7a9c43200033da996ff9093be3ac84dc' | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch b9be5b9444772324459989177108a6a65b8b2769 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/cli11': checked out 'b9be5b9444772324459989177108a6a65b8b2769' | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
| From https://github.com/fmtlib/fmt | |
| * branch a33701196adfad74917046096bf5a2aa0ab0bb50 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/fmt': checked out 'a33701196adfad74917046096bf5a2aa0ab0bb50' | |
| From https://github.com/nlohmann/json | |
| * branch 4f8fba14066156b73f1189a2b8bd568bde5284c5 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/json': checked out '4f8fba14066156b73f1189a2b8bd568bde5284c5' | |
| From https://github.com/pybind/pybind11 | |
| * branch 914c06fb252b6cc3727d0eedab6736e88a3fcb01 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/pybind11': checked out '914c06fb252b6cc3727d0eedab6736e88a3fcb01' | |
| From https://github.com/gabime/spdlog | |
| * branch 76fb40d95455f249bd70824ecfcae7a8f0930fa3 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/spdlog': checked out '76fb40d95455f249bd70824ecfcae7a8f0930fa3' | |
| [32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m | |
| Requirement already satisfied: Jinja2>=2.9.3 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 1)) (3.1.2) | |
| Requirement already satisfied: PyYAML>=3.13 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 2)) (6.0.1) | |
| Requirement already satisfied: pytest in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 3)) (7.4.3) | |
| Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 4)) (4.1.0) | |
| Collecting sympy (from -r external/nmodl/requirements.txt (line 5)) | |
| Using cached sympy-1.12-py3-none-any.whl (5.7 MB) | |
| Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 6)) (1.26.2) | |
| Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 7)) (0.3.1) | |
| Requirement already satisfied: scikit-build in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 8)) (0.17.6) | |
| Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 1)) (2.1.3) | |
| Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.0) | |
| Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (23.2) | |
| Requirement already satisfied: pluggy<2.0,>=0.12 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.3.0) | |
| Requirement already satisfied: exceptiongroup>=1.0.0rc8 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.2.0) | |
| Requirement already satisfied: tomli>=1.0.0 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.1) | |
| Requirement already satisfied: coverage>=5.2.1 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=5.2.1->pytest-cov->-r external/nmodl/requirements.txt (line 4)) (7.3.2) | |
| Collecting mpmath>=0.19 (from sympy->-r external/nmodl/requirements.txt (line 5)) | |
| Using cached mpmath-1.3.0-py3-none-any.whl (536 kB) | |
| Requirement already satisfied: distro in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (1.8.0) | |
| Requirement already satisfied: setuptools>=42.0.0 in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (69.0.2) | |
| Requirement already satisfied: wheel>=0.32.0 in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (0.42.0) | |
| Installing collected packages: mpmath, sympy | |
| Successfully installed mpmath-1.3.0 sympy-1.12 | |
| [32;1m$ source ./venv/bin/activate[0;m | |
| [32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m | |
| [32;1m$ ${PYTHON} --version[0;m | |
| Python 3.10.8 | |
| [32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m | |
| [32;1m$ export CXX=${CXX:-g++}[0;m | |
| [32;1m$ export CC=${CC:-gcc}[0;m | |
| [32;1m$ brew install flex bison[0;m | |
| Warning: flex 2.6.4_2 is already installed and up-to-date. | |
| To reinstall 2.6.4_2, run: | |
| brew reinstall flex | |
| Warning: bison 3.8.2 is already installed and up-to-date. | |
| To reinstall 3.8.2, run: | |
| brew reinstall bison | |
| [32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m | |
| [32;1m$ export INSTALL_DIR=$(pwd)/install[0;m | |
| [32;1m$ echo $LANG[0;m | |
| [32;1m$ echo $LC_ALL[0;m | |
| [32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m | |
| [32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m | |
| [32;1m$ cmake_args=(-G Ninja)[0;m | |
| [32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m | |
| [32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m | |
| [32;1m$ mkdir build && cd build[0;m | |
| [32;1m$ echo "Building with ${cmake_args[@]}"[0;m | |
| Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/venv/bin/python | |
| [32;1m$ cmake .. "${cmake_args[@]}"[0;m | |
| -- The C compiler identification is AppleClang 14.0.0.14000029 | |
| -- The CXX compiler identification is AppleClang 14.0.0.14000029 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /usr/bin/gcc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /usr/bin/g++ - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check | |
| -- Sub-module : missing external/coding-conventions : running git submodule update --init | |
| Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions' | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/coding-conventions'... | |
| Submodule path 'external/coding-conventions': checked out '80a2c9013463b89b5c426e18403e9a2f87c59a00' | |
| -- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123 | |
| Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123' | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/Random123'... | |
| From https://github.com/BlueBrain/Random123 | |
| * branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD | |
| Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1' | |
| -- 3rd party project: using Random123 from "external/Random123" | |
| -- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen | |
| Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen' | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/eigen'... | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 328b5f90858f93344ebc1484df8cadfd2a5da6dd -> FETCH_HEAD | |
| Submodule path 'external/eigen': checked out '328b5f90858f93344ebc1484df8cadfd2a5da6dd' | |
| -- 3rd party project: using eigen from "external/eigen" | |
| -- Enabling sanitizers: address | |
| -- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| -- Checking if /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/venv/bin/python is a working python | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") | |
| -- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6") | |
| -- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include | |
| -- Found MPI_C: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Detected OpenMPI 4.1.4 | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
| -- Found Threads: TRUE | |
| -- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11 | |
| Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11' | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/CLI11'... | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD | |
| Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2' | |
| -- 3rd party project: using CLI11 from "external/CLI11" | |
| -- Building CoreNEURON | |
| -- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") | |
| -- Found Perl: /usr/bin/perl (found version "5.30.3") | |
| -- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH) | |
| -- Sub-project : using nmodl from from /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/nmodl | |
| -- CHECKING FOR FLEX/BISON | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") | |
| -- Adding Flex include path as : /opt/homebrew/opt/flex/include/ | |
| -- NMODL_TEST_FORMATTING: OFF | |
| -- NMODL_GIT_HOOKS: OFF | |
| -- NMODL_GIT_COMMIT_HOOKS: | |
| -- NMODL_GIT_PUSH_HOOKS: courtesy-msg | |
| -- NMODL_STATIC_ANALYSIS: OFF | |
| -- NMODL_TEST_STATIC_ANALYSIS: OFF | |
| -- 3rd party project: using eigen from "ext/eigen" | |
| -- 3rd party project: using fmt from "ext/fmt" | |
| -- Module support is disabled. | |
| -- Version: 9.1.0 | |
| -- Build type: Custom | |
| -- CXX_STANDARD: 17 | |
| -- Required features: cxx_variadic_templates | |
| -- 3rd party project: using json from "ext/json" | |
| -- Using the single-header code from /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/nmodl/ext/json/single_include/ | |
| -- 3rd party project: using pybind11 from "ext/pybind11" | |
| -- pybind11 v2.9.2 | |
| -- Found PythonInterp: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/venv/bin/python (found version "3.10.8") | |
| -- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- 3rd party project: using spdlog from "ext/spdlog" | |
| -- Build spdlog: 1.10.0 | |
| -- Build type: Custom | |
| -- CHECKING FOR PYTHON | |
| -- Found PythonInterp: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.8", minimum required is "3.8") | |
| -- | |
| -- Configured NMODL 0.0 (3136d21 2023-12-08 14:41:12 +0100) | |
| -- | |
| -- You can now build NMODL using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------------+-------------------------------------------------------- | |
| -- test | Run unit tests | |
| -- install | Will install NMODL to: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g | |
| -- Build Type | Custom | |
| -- Python Bindings | ON | |
| -- Flex | /opt/homebrew/opt/flex/bin/flex | |
| -- Bison | /opt/homebrew/opt/bison/bin/bison | |
| -- Python | /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/venv/bin/python | |
| -- Linked against | TRUE | |
| -- --------------------+-------------------------------------------------------- | |
| -- See documentation : https://github.com/BlueBrain/nmodl/ | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| -- | |
| -- CoreNEURON is enabled with following build configuration: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -std=c++17 -DCORENEURON_BUILD -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
| -- Build Type | SHARED | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include | |
| -- OpenMP | ON | |
| -- NMODL PATH | /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/bin/nmodl | |
| -- NMODL FLAGS | | |
| -- GPU Support | OFF | |
| -- Auto Timeout | ON | |
| -- Wrap exp() | OFF | |
| -- SplayTree Queue | ON | |
| -- NetReceive Buffer | ON | |
| -- Caliper | OFF | |
| -- Likwid | OFF | |
| -- Unit Tests | ON | |
| -- Reporting | OFF | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| Extracting link flags from target 'nrngnu', beware that this can be fragile. Got: | |
| Extracting link flags from target 'sparse13', beware that this can be fragile. Got: | |
| Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: | |
| Generating link flags from path /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib | |
| Generating link flags from path /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| -- Sub-module : missing /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/catch2 : running git submodule update --init | |
| Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2' | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/external/catch2'... | |
| Submodule path 'external/catch2': checked out 'c4e3767e265808590986d5db6ca1b5532a7f3d13' | |
| -- Found Python module 'pytest' with version(s): 7.4.3 | |
| -- Found Python module 'pytest_cov' with version(s): 4.1.0 | |
| -- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata | |
| Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata' | |
| Cloning into '/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/test/rxd/testdata'... | |
| From https://github.com/neuronsimulator/rxdtestdata | |
| * branch 30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD | |
| Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58' | |
| -- 3rd party project: using rxd/testdata from "test/rxd/testdata" | |
| -- Found Python module 'mpi4py' with version(s): 3.1.5 | |
| -- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled | |
| -- Found Python module 'mpi4py' with version(s): 3.1.5 | |
| -- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled | |
| -- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled | |
| -- Could NOT find OpenSSL, try to set the path to OpenSSL root folder in the system variable OPENSSL_ROOT_DIR (missing: OPENSSL_CRYPTO_LIBRARY OPENSSL_INCLUDE_DIR) | |
| -- Skipping tqperf test as OpenSSL package not found | |
| -- | |
| -- Configured NEURON 9.0.0 | |
| -- | |
| -- You can now build NEURON using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------+-------------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------+-------------------------------------------------------------- | |
| -- install | Will install NEURON to: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install | |
| -- | Change the install location of NEURON using: | |
| -- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path> | |
| -- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean | |
| -- uninstall | Removes files installed by make install (todo) | |
| -- --------------+-------------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------+-------------------------------------------------------------- | |
| -- C COMPILER | /usr/bin/gcc | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast) | |
| -- COMPILE FLAGS | -O1 -g -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
| -- Shared | ON | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include | |
| -- LIB | /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib | |
| -- Python | ON | |
| -- DYNAMIC | OFF | |
| -- MODULE | ON | |
| -- python3.10 (default) | |
| -- EXE | /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/venv/bin/python | |
| -- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 | |
| -- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd | |
| -- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd | |
| -- RX3D | OFF | |
| -- Interviews | OFF | |
| -- CoreNEURON | ON | |
| -- PATH | /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/coreneuron | |
| -- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib | |
| -- Tests | ON | |
| -- --------------+-------------------------------------------------------------- | |
| -- See documentation : https://www.neuron.yale.edu/neuron/ | |
| -- --------------+-------------------------------------------------------------- | |
| -- | |
| -- Configuring done | |
| -- Generating done | |
| -- Build files have been written to: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build | |
| [32;1m$ ccache -z[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache -vs 2>/dev/null[0;m | |
| Cache directory: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/ccache | |
| Config file: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/ccache/ccache.conf | |
| System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf | |
| Stats updated: Fri Dec 8 15:22:26 2023 | |
| Local storage: | |
| Cache size (GB): 0.14 / 5.00 ( 2.84%) | |
| Files: 951 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ cmake --build . --parallel[0;m | |
| [0/2] Re-checking globbed directories... | |
| [1/1694] Generating share/nrn/demo/demo.hoc | |
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| [14/1694] Update hh.mod for CoreNEURON compatibility | |
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| 56 | %define parser_class_name {DiffeqParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
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| 49 | %define parser_class_name {UnitParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
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| 52 | %define parser_class_name {CParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {CParser} | |
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| 64 | %define parser_class_name {NmodlParser} | |
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| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
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| [625/1694] Generating nrniv_py3.10_python_check_sys_stdout.encoding/dump_sys_attr.py | |
| [626/1694] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o | |
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| [630/1694] Generating nrniv_pydef_python_check_sys_path/check_sys_attr.py | |
| [631/1694] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/nocpout.cpp.o | |
| [632/1694] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o | |
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| [639/1694] Generating nrniv_pydef_nrnpython_check_sys_prefix/dump_sys_attr.py | |
| [640/1694] -- NMODL : GENERATING NMODL LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/nmodl.ll:503: warning, -s option given but default rule can be matched | |
| [641/1694] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! -- | |
| [642/1694] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc | |
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| [645/1694] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/dump_sys_attr.py | |
| [646/1694] -- NMODL : GENERATING C(11) LEXER WITH FLEX! -- | |
| [647/1694] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/diffeq.ll:100: warning, -s option given but default rule can be matched | |
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| [649/1694] Generating nrniv_pydef_python_check_sys_base_prefix/dump_sys_attr.py | |
| [650/1694] -- NMODL : GENERATING UNIT LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched | |
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| [733/1694] Generating ../nrnoc/exp2syn.cpp | |
| Translating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/apcount.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/feature.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
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| Translating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/expsyn.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/intfire1.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/hh.cpp | |
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| [740/1694] Generating ../nrnoc/intfire2.cpp | |
| Translating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/intfire2.cpp | |
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| Translating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/intfire4.cpp | |
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| Translating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/netstim.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
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| Translating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/oclmp.cpp | |
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| Translating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/passive.cpp | |
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| Translating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/src/nrnoc/pattern.cpp | |
| Thread Safe | |
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| only affects and is affected by discrete events. As such it is not | |
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| [1043/1694] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/modlreg.cpp.o | |
| [1044/1694] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/basic.cpp.o | |
| [1045/1694] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocmatrix.cpp.o | |
| [1046/1694] Linking CXX shared library lib/libnrniv.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| [1047/1694] Linking CXX executable bin/nrniv | |
| [1048/1694] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/container.cpp.o | |
| [1049/1694] Generating inithoc.cpp | |
| [1050/1694] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/generic_data_handle.cpp.o | |
| [1051/1694] Running utility command for hoc_module | |
| INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS | |
| INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk | |
| WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org | |
| WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0 | |
| INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'}) | |
| INFO:root:RX3D is DISABLED | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. | |
| !! | |
| ******************************************************************************** | |
| Requirements should be satisfied by a PEP 517 installer. | |
| If you are using pip, you can try `pip install --use-pep517`. | |
| ******************************************************************************** | |
| !! | |
| dist.fetch_build_eggs(dist.setup_requires) | |
| WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn" is shallow and may cause errors | |
| warnings.warn(f'"{wd.path}" is shallow and may cause errors') | |
| INFO:root:running build | |
| INFO:root:running build_py | |
| INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:creating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:creating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:creating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:creating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:creating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
| INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
| INFO:root:creating /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:running build_ext | |
| INFO:root:==> Building Python extensions | |
| INFO:root:building 'neuron.hoc' extension | |
| INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17 | |
| INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../ | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| INFO:root:running build_scripts | |
| INFO:root:creating build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10 | |
| INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755 | |
| [1052/1694] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/mechanism.cpp.o | |
| [1053/1694] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/nrn/demo/release | |
| cfiles = | |
| Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
| MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL ../cabpump.mod | |
| -> NMODL ../cachan1.mod | |
| -> NMODL ../camchan.mod | |
| Translating cabpump.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp | |
| Translating cachan1.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp | |
| Thread Safe | |
| Translating camchan.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| Thread Safe | |
| -> NMODL ../capump.mod | |
| -> NMODL ../invlfire.mod | |
| -> NMODL ../khhchan.mod | |
| Translating capump.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp | |
| Thread Safe | |
| Translating invlfire.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp | |
| Thread Safe | |
| Translating khhchan.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp | |
| Thread Safe | |
| -> NMODL ../nacaex.mod | |
| -> NMODL ../nachan.mod | |
| -> NMODL ../release.mod | |
| Translating nachan.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp | |
| Thread Safe | |
| Translating nacaex.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp | |
| Thread Safe | |
| Translating release.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp | |
| -> Compiling cabpump.cpp | |
| Thread Safe | |
| -> Compiling cachan1.cpp | |
| -> Compiling camchan.cpp | |
| -> Compiling capump.cpp | |
| -> Compiling invlfire.cpp | |
| -> Compiling khhchan.cpp | |
| -> Compiling nacaex.cpp | |
| -> Compiling nachan.cpp | |
| -> Compiling release.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1054/1694] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/utils/enumerate.cpp.o | |
| [1055/1694] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/oc/hoc_interpreter.cpp.o | |
| [1056/1694] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/node.cpp.o | |
| [1057/1694] Generating nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/mcna.mod | |
| [1058/1694] Building CXX object test/coreneuron/unit/interleave_info/CMakeFiles/interleave_info_bin.dir/check_constructors.cpp.o | |
| [1059/1694] Building CXX object test/coreneuron/unit/cmdline_interface/CMakeFiles/cmd_interface_test_bin.dir/test_cmdline_interface.cpp.o | |
| [1060/1694] Linking CXX executable bin/interleave_info_bin | |
| [1061/1694] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/follower.mod | |
| [1062/1694] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/gap.mod | |
| [1063/1694] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/name_clashes.mod | |
| [1064/1694] Linking CXX executable bin/cmd_interface_test_bin | |
| [1065/1694] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/unitstest.mod | |
| [1066/1694] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/version_macros.mod | |
| [1067/1694] Generating nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/opaque_token.mod | |
| [1068/1694] Generating nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/ptr.mod | |
| [1069/1694] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/benchmarks/threads/test_multicore.cpp.o | |
| [1070/1694] Generating nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/ppxsrc.mod | |
| [1071/1694] Building CXX object test/coreneuron/unit/alignment/CMakeFiles/alignment_test_bin.dir/alignment.cpp.o | |
| [1072/1694] Linking CXX executable bin/alignment_test_bin | |
| [1073/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/argpass.mod | |
| [1074/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cabpump.mod | |
| [1075/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cachan.mod | |
| [1076/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacum.mod | |
| [1077/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacur.mod | |
| [1078/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadif.mod | |
| [1079/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadifusl.mod | |
| [1080/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagk.mod | |
| [1081/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagkftab.mod | |
| [1082/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/capmp.mod | |
| [1083/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/expsynspine.mod | |
| [1084/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fh.mod | |
| [1085/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fit1.mod | |
| [1086/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/gap.mod | |
| [1087/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hh1.mod | |
| [1088/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hhvect.mod | |
| [1089/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/inatest.mod | |
| [1090/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod | |
| [1091/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod | |
| [1092/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod | |
| [1093/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod | |
| [1094/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod | |
| [1095/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod | |
| [1096/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod | |
| [1097/1694] Building CXX object test/coreneuron/unit/queueing/CMakeFiles/queuing_test_bin.dir/test_queueing.cpp.o | |
| [1098/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod | |
| [1099/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod | |
| [1100/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc | |
| [1101/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod | |
| [1102/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod | |
| [1103/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod | |
| [1104/1694] Linking CXX executable bin/queuing_test_bin | |
| [1105/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod | |
| [1106/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod | |
| [1107/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod | |
| [1108/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod | |
| [1109/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod | |
| [1110/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod | |
| [1111/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod | |
| [1112/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod | |
| [1113/1694] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod | |
| [1114/1694] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/atest.mod | |
| [1115/1694] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata.inc | |
| [1116/1694] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata.mod | |
| [1117/1694] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_pp.mod | |
| [1118/1694] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_ppts.mod | |
| [1119/1694] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_ts.mod | |
| [1120/1694] Building special[-core] for test group datahandle | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453 | |
| cfiles = | |
| Mod files: "./opaque_token.mod" "./ptr.mod" | |
| MODOBJS= ./opaque_token.o ./ptr.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././opaque_token.mod | |
| -> NMODL .././ptr.mod | |
| Translating ptr.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp | |
| Translating opaque_token.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| Notice: VERBATIM blocks are not thread safe | |
| -> Compiling opaque_token.cpp | |
| -> Compiling ptr.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1121/1694] Generating datahandle/datahandle_tests/test/datahandle/test_1.py | |
| [1122/1694] Generating datahandle/datahandle_tests/test/datahandle/test_token.py | |
| [1123/1694] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod | |
| [1124/1694] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod | |
| [1125/1694] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod | |
| [1126/1694] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod | |
| [1127/1694] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod | |
| [1128/1694] Building CXX object test/coreneuron/unit/lfp/CMakeFiles/lfp_test_bin.dir/lfp.cpp.o | |
| [1129/1694] Linking CXX executable bin/lfp_test_bin | |
| [1130/1694] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod | |
| [1131/1694] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod | |
| [1132/1694] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod | |
| [1133/1694] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod | |
| [1134/1694] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod | |
| [1135/1694] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod | |
| [1136/1694] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod | |
| [1137/1694] Building special[-core] for test group coverage_tests | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51 | |
| cfiles = | |
| Mod files: "./ppxsrc.mod" | |
| MODOBJS= ./ppxsrc.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././ppxsrc.mod | |
| Translating ppxsrc.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp | |
| Thread Safe | |
| -> Compiling ppxsrc.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1138/1694] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json | |
| [1139/1694] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py | |
| [1140/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial.inc | |
| [1141/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial.mod | |
| [1142/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial_pp.mod | |
| [1143/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/bacur.mod | |
| [1144/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/banocur.mod | |
| [1145/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/fornetcon.mod | |
| [1146/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/invlfire.mod | |
| [1147/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/natrans.mod | |
| [1148/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/netmove.mod | |
| [1149/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/sample.mod | |
| [1150/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/unitstest.mod | |
| [1151/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/version_macros.mod | |
| [1152/1694] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/watchrange.mod | |
| [1153/1694] Building special[-core] for test group pytest | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c | |
| cfiles = | |
| Mod files: "./mcna.mod" | |
| MODOBJS= ./mcna.o | |
| -> NMODL .././mcna.mod | |
| -> Compiling mod_func.cpp | |
| Translating mcna.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp | |
| Thread Safe | |
| -> Compiling mcna.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1154/1694] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json | |
| [1155/1694] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py | |
| [1156/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod | |
| [1157/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod | |
| [1158/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod | |
| [1159/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod | |
| [1160/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod | |
| [1161/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod | |
| [1162/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod | |
| [1163/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod | |
| [1164/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod | |
| [1165/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod | |
| [1166/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod | |
| [1167/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod | |
| [1168/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod | |
| [1169/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod | |
| [1170/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod | |
| [1171/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod | |
| [1172/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod | |
| [1173/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod | |
| [1174/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod | |
| [1175/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod | |
| [1176/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod | |
| [1177/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod | |
| [1178/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod | |
| [1179/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| [1180/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod | |
| [1181/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod | |
| [1182/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod | |
| [1183/1694] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod | |
| [1184/1694] Building CXX object test/CMakeFiles/testneuron.dir/common/catch2_main.cpp.o | |
| [1185/1694] Linking CXX executable bin/test/testneuron | |
| [1186/1694] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod | |
| [1187/1694] Building CXX object test/coreneuron/unit/solver/CMakeFiles/test-solver.dir/test_solver.cpp.o | |
| [1188/1694] Linking CXX executable bin/test-solver | |
| [1189/1694] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod | |
| [1190/1694] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod | |
| [1191/1694] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod | |
| [1192/1694] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod | |
| [1193/1694] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod | |
| [1194/1694] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod | |
| [1195/1694] Building special[-core] for test group hoctests | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f | |
| cfiles = | |
| Mod files: "./atest.mod" "./sdata.mod" "./sdata_pp.mod" "./sdata_ppts.mod" "./sdata_ts.mod" | |
| MODOBJS= ./atest.o ./sdata.o ./sdata_pp.o ./sdata_ppts.o ./sdata_ts.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././atest.mod | |
| -> NMODL .././sdata.mod | |
| -> NMODL .././sdata_pp.mod | |
| Translating sdata_pp.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_pp.cpp | |
| Translating atest.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/atest.cpp | |
| INCLUDEing sdata.inc | |
| Notice: Use of POINTER is not thread safe. | |
| Notice: VERBATIM blocks are not thread safe | |
| Thread Safe | |
| Translating sdata.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata.cpp | |
| INCLUDEing sdata.inc | |
| Notice: Use of POINTER is not thread safe. | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././sdata_ppts.mod | |
| -> NMODL .././sdata_ts.mod | |
| -> Compiling atest.cpp | |
| Translating sdata_ppts.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_ppts.cpp | |
| Translating sdata_ts.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_ts.cpp | |
| INCLUDEing sdata.inc | |
| INCLUDEing sdata.inc | |
| Thread Safe | |
| Thread Safe | |
| -> Compiling sdata.cpp | |
| -> Compiling sdata_pp.cpp | |
| -> Compiling sdata_ppts.cpp | |
| -> Compiling sdata_ts.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1196/1694] Generating hoctests/test_loadbal_hoc/expect_err.hoc | |
| [1197/1694] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc | |
| [1198/1694] Generating hoctests/perf1_hoc/expect_err.hoc | |
| [1199/1694] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc | |
| [1200/1694] Generating hoctests/test1_hoc/expect_err.hoc | |
| [1201/1694] Generating hoctests/test1_hoc/vardimtests/test1.hoc | |
| [1202/1694] Generating hoctests/test2_hoc/expect_err.hoc | |
| [1203/1694] Generating hoctests/test2_hoc/vardimtests/test2.hoc | |
| [1204/1694] Generating hoctests/test3_hoc/expect_err.hoc | |
| [1205/1694] Generating hoctests/test3_hoc/vardimtests/test3.hoc | |
| [1206/1694] Generating hoctests/test4_hoc/expect_err.hoc | |
| [1207/1694] Generating hoctests/test4_hoc/vardimtests/test4.hoc | |
| [1208/1694] Generating hoctests/test5_hoc/expect_err.hoc | |
| [1209/1694] Generating hoctests/test5_hoc/vardimtests/test5.hoc | |
| [1210/1694] Generating hoctests/test6_hoc/expect_err.hoc | |
| [1211/1694] Generating hoctests/test6_hoc/vardimtests/test6.hoc | |
| [1212/1694] Generating hoctests/test7_hoc/expect_err.hoc | |
| [1213/1694] Generating hoctests/test7_hoc/vardimtests/test7.hoc | |
| [1214/1694] Generating hoctests/test8_hoc/expect_err.hoc | |
| [1215/1694] Generating hoctests/test8_hoc/vardimtests/test8.hoc | |
| [1216/1694] Generating hoctests/test9_hoc/expect_err.hoc | |
| [1217/1694] Generating hoctests/test9_hoc/vardimtests/test9.hoc | |
| [1218/1694] Generating hoctests/test_cvinterp_py/tests/test_cvinterp.py | |
| [1219/1694] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py | |
| [1220/1694] Generating hoctests/test_kschan_py/tests/test_kschan.json | |
| [1221/1694] Generating hoctests/test_kschan_py/tests/test_kschan.py | |
| [1222/1694] Generating hoctests/test_mechfunc_py/tests/test_mechfunc.py | |
| [1223/1694] Generating hoctests/test_mode_py/tests/test_mode.py | |
| [1224/1694] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json | |
| [1225/1694] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py | |
| [1226/1694] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py | |
| [1227/1694] Generating hoctests/test_setdata_py/tests/test_setdata.py | |
| [1228/1694] Generating hoctests/test_shape_py/tests/test_shape.py | |
| [1229/1694] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py | |
| [1230/1694] Generating hoctests/test1_py/vardimtests/test1.py | |
| [1231/1694] Generating hoctests/test2_py/vardimtests/test2.py | |
| [1232/1694] Generating hoctests/test9_py/vardimtests/test9.py | |
| [1233/1694] Generating ../tests/testcorenrn/reference/out_gf.spk | |
| [1234/1694] Generating ../tests/testcorenrn/reference/out_kin.spk | |
| [1235/1694] Generating ../tests/testcorenrn/reference/out_patstim.spk | |
| [1236/1694] Generating ../tests/testcorenrn/reference/out_vecplay.spk | |
| [1237/1694] Generating ../tests/testcorenrn/reference/out_vecevent.spk | |
| [1238/1694] Generating ../tests/testcorenrn/reference/out_watch.spk | |
| [1239/1694] Generating ../tests/testcorenrn/reference/out_netstimdirect.spk | |
| [1240/1694] Building special[-core] for test group parallel | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100 | |
| cfiles = | |
| Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
| MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././follower.mod | |
| -> NMODL .././gap.mod | |
| -> NMODL .././name_clashes.mod | |
| Translating gap.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp | |
| Thread Safe | |
| Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp | |
| Thread Safe | |
| -> NMODL .././unitstest.mod | |
| Translating follower.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp | |
| Thread Safe | |
| -> NMODL .././version_macros.mod | |
| -> Compiling follower.cpp | |
| Translating unitstest.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp | |
| Thread Safe | |
| -> Compiling gap.cpp | |
| Translating version_macros.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp | |
| Thread Safe | |
| -> Compiling name_clashes.cpp | |
| -> Compiling unitstest.cpp | |
| -> Compiling version_macros.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1241/1694] Generating parallel/subworld/test/parallel_tests/test_subworld.py | |
| [1242/1694] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py | |
| [1243/1694] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py | |
| [1244/1694] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py | |
| [1245/1694] Generating parallel/bas/test/parallel_tests/test_bas.py | |
| [1246/1694] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py | |
| [1247/1694] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json | |
| [1248/1694] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py | |
| [1249/1694] Building special[-core] for test group nmodl_tests | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5 | |
| cfiles = | |
| Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod" | |
| MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././cadif.mod | |
| -> NMODL .././disc.mod | |
| -> NMODL .././fornetcon.mod | |
| Translating cadif.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp | |
| Thread Safe | |
| Translating disc.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp | |
| Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp | |
| Notice: DISCRETE is not thread safe. | |
| Notice: This mechanism cannot be used with CVODE | |
| -> NMODL .././hhwatch.mod | |
| Thread Safe | |
| -> NMODL .././k3st.mod | |
| -> NMODL .././table.mod | |
| Translating k3st.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp | |
| NEURON's CVode method ignores conservation | |
| Thread Safe | |
| -> NMODL .././variabletypes.mod | |
| Translating table.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp | |
| Thread Safe | |
| -> Compiling cadif.cpp | |
| Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp | |
| Thread Safe | |
| -> Compiling disc.cpp | |
| Translating variabletypes.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp | |
| Thread Safe | |
| -> Compiling fornetcon.cpp | |
| -> Compiling hhwatch.cpp | |
| -> Compiling k3st.cpp | |
| -> Compiling table.cpp | |
| -> Compiling variabletypes.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1250/1694] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py | |
| [1251/1694] Generating nmodl_tests/test_table/test/nmodl/test_table.py | |
| [1252/1694] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py | |
| [1253/1694] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py | |
| [1254/1694] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py | |
| [1255/1694] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py | |
| [1256/1694] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py | |
| [1257/1694] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py | |
| [1258/1694] Building special[-core] for test group pytest_coreneuron | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0 | |
| cfiles = | |
| Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
| MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/follower.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/gap.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/name_clashes.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././follower.mod | |
| -> NMODL .././gap.mod | |
| -> NMODL .././name_clashes.mod | |
| Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp | |
| Translating follower.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp | |
| Thread Safe | |
| -> NMODL .././unitstest.mod | |
| Thread Safe | |
| Translating gap.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp | |
| Thread Safe | |
| -> NMODL .././version_macros.mod | |
| -> Compiling follower.cpp | |
| Translating unitstest.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp | |
| Translating version_macros.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp | |
| Thread Safe | |
| -> Compiling gap.cpp | |
| Thread Safe | |
| -> Compiling name_clashes.cpp | |
| -> Compiling unitstest.cpp | |
| -> Compiling version_macros.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1259/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py | |
| [1260/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py | |
| [1261/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py | |
| [1262/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py | |
| [1263/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py | |
| [1264/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py | |
| [1265/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py | |
| [1266/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py | |
| [1267/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py | |
| [1268/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py | |
| [1269/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py | |
| [1270/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py | |
| [1271/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py | |
| [1272/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py | |
| [1273/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json | |
| [1274/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py | |
| [1275/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py | |
| [1276/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py | |
| [1277/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py | |
| [1278/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py | |
| [1279/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py | |
| [1280/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py | |
| [1281/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py | |
| [1282/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py | |
| [1283/1694] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py | |
| [1284/1694] Building special[-core] for test group external_ringtest | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff | |
| cfiles = | |
| Mod files: "./halfgap.mod" | |
| MODOBJS= ./halfgap.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/halfgap.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././halfgap.mod | |
| Translating halfgap.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp | |
| Thread Safe | |
| -> Compiling halfgap.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1285/1694] Generating ../../external_ringtest/neuron/ranparm.py | |
| [1286/1694] Generating ../../external_ringtest/neuron/args.py | |
| [1287/1694] Generating ../../external_ringtest/neuron/cell.hoc | |
| [1288/1694] Generating ../../external_ringtest/neuron/celluniform.hoc | |
| [1289/1694] Generating ../../external_ringtest/neuron/commonutils.py | |
| [1290/1694] Generating ../../external_ringtest/neuron/ringtest.py | |
| [1291/1694] Generating ../../external_ringtest/neuron_mpi/args.py | |
| [1292/1694] Generating ../../external_ringtest/neuron/ring.py | |
| [1293/1694] Generating ../../external_ringtest/neuron/ringuniform.py | |
| [1294/1694] Generating ../../external_ringtest/neuron/settings.py | |
| [1295/1694] Generating ../../external_ringtest/neuron_mpi/cell.hoc | |
| [1296/1694] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc | |
| [1297/1694] Generating ../../external_ringtest/neuron_mpi/commonutils.py | |
| [1298/1694] Generating ../../external_ringtest/neuron_mpi/ranparm.py | |
| [1299/1694] Generating ../../external_ringtest/neuron_mpi/ring.py | |
| [1300/1694] Generating ../../external_ringtest/neuron_mpi/ringuniform.py | |
| [1301/1694] Generating ../../external_ringtest/neuron_mpi/ringtest.py | |
| [1302/1694] Generating ../../external_ringtest/neuron_mpi/settings.py | |
| [1303/1694] Generating ../../external_ringtest/neuron_mpi_python/args.py | |
| [1304/1694] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc | |
| [1305/1694] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc | |
| [1306/1694] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py | |
| [1307/1694] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py | |
| [1308/1694] Generating ../../external_ringtest/neuron_mpi_python/ring.py | |
| [1309/1694] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py | |
| [1310/1694] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py | |
| [1311/1694] Generating ../../external_ringtest/neuron_mpi_python/settings.py | |
| [1312/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py | |
| [1313/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc | |
| [1314/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py | |
| [1315/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py | |
| [1316/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc | |
| [1317/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py | |
| [1318/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py | |
| [1319/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py | |
| [1320/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py | |
| [1321/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py | |
| [1322/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc | |
| [1323/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc | |
| [1324/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py | |
| [1325/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py | |
| [1326/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py | |
| [1327/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py | |
| [1328/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py | |
| [1329/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py | |
| [1330/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py | |
| [1331/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc | |
| [1332/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc | |
| [1333/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py | |
| [1334/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py | |
| [1335/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py | |
| [1336/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py | |
| [1337/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py | |
| [1338/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py | |
| [1339/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py | |
| [1340/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc | |
| [1341/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc | |
| [1342/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py | |
| [1343/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py | |
| [1344/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py | |
| [1345/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py | |
| [1346/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py | |
| [1347/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py | |
| [1348/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py | |
| [1349/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc | |
| [1350/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc | |
| [1351/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py | |
| [1352/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py | |
| [1353/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py | |
| [1354/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py | |
| [1355/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py | |
| [1356/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py | |
| [1357/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py | |
| [1358/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc | |
| [1359/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc | |
| [1360/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py | |
| [1361/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py | |
| [1362/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py | |
| [1363/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py | |
| [1364/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py | |
| [1365/1694] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py | |
| [1366/1694] Building special[-core] for test group testcorenrn_bbcore | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876 | |
| cfiles = | |
| Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod" | |
| MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/hhderiv.mod | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/hhkin.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse | |
| [NMODL] [info] :: Running sympy solve visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/hhwatch.mod | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/nacum.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././Gfluct3.mod | |
| -> NMODL .././hhkin.mod | |
| -> NMODL .././hhderiv.mod | |
| Translating hhderiv.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp | |
| Thread Safe | |
| Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp | |
| Translating hhkin.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././hhwatch.mod | |
| -> NMODL .././nacum.mod | |
| -> NMODL .././vecevent.mod | |
| Translating vecevent.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp | |
| Thread Safe | |
| Translating nacum.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp | |
| Thread Safe | |
| -> Compiling Gfluct3.cpp | |
| -> Compiling hhderiv.cpp | |
| -> Compiling hhkin.cpp | |
| -> Compiling hhwatch.cpp | |
| -> Compiling nacum.cpp | |
| -> Compiling vecevent.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1367/1694] Generating ../../testcorenrn_bbcore/neuron/common.hoc | |
| [1368/1694] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc | |
| [1369/1694] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc | |
| [1370/1694] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc | |
| [1371/1694] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc | |
| [1372/1694] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc | |
| [1373/1694] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1374/1694] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1375/1694] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc | |
| [1376/1694] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc | |
| [1377/1694] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc | |
| [1378/1694] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc | |
| [1379/1694] Generating ../../testcorenrn_conc/neuron/common.hoc | |
| [1380/1694] Generating ../../testcorenrn_conc/neuron/defvar.hoc | |
| [1381/1694] Generating ../../testcorenrn_conc/neuron/testconc.hoc | |
| [1382/1694] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1383/1694] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1384/1694] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc | |
| [1385/1694] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc | |
| [1386/1694] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc | |
| [1387/1694] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc | |
| [1388/1694] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc | |
| [1389/1694] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc | |
| [1390/1694] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc | |
| [1391/1694] Generating ../../testcorenrn_deriv/neuron/common.hoc | |
| [1392/1694] Generating ../../testcorenrn_deriv/neuron/defvar.hoc | |
| [1393/1694] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc | |
| [1394/1694] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc | |
| [1395/1694] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1396/1694] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc | |
| [1397/1694] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc | |
| [1398/1694] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1399/1694] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc | |
| [1400/1694] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc | |
| [1401/1694] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc | |
| [1402/1694] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc | |
| [1403/1694] Generating ../../testcorenrn_gf/neuron/common.hoc | |
| [1404/1694] Generating ../../testcorenrn_gf/neuron/defvar.hoc | |
| [1405/1694] Generating ../../testcorenrn_gf/neuron/testgf.hoc | |
| [1406/1694] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc | |
| [1407/1694] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc | |
| [1408/1694] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1409/1694] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc | |
| [1410/1694] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1411/1694] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc | |
| [1412/1694] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc | |
| [1413/1694] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc | |
| [1414/1694] Generating ../../testcorenrn_kin/neuron/common.hoc | |
| [1415/1694] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc | |
| [1416/1694] Generating ../../testcorenrn_kin/neuron/testkin.hoc | |
| [1417/1694] Generating ../../testcorenrn_kin/neuron/defvar.hoc | |
| [1418/1694] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc | |
| [1419/1694] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc | |
| [1420/1694] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1421/1694] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc | |
| [1422/1694] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1423/1694] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc | |
| [1424/1694] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc | |
| [1425/1694] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc | |
| [1426/1694] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc | |
| [1427/1694] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc | |
| [1428/1694] Generating ../../testcorenrn_patstim/neuron/common.hoc | |
| [1429/1694] Generating ../../testcorenrn_patstim/neuron/defvar.hoc | |
| [1430/1694] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc | |
| [1431/1694] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc | |
| [1432/1694] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc | |
| [1433/1694] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc | |
| [1434/1694] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc | |
| [1435/1694] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc | |
| [1436/1694] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc | |
| [1437/1694] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc | |
| [1438/1694] Generating ../../testcorenrn_vecplay/neuron/common.hoc | |
| [1439/1694] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc | |
| [1440/1694] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc | |
| [1441/1694] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc | |
| [1442/1694] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1443/1694] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc | |
| [1444/1694] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1445/1694] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc | |
| [1446/1694] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc | |
| [1447/1694] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc | |
| [1448/1694] Generating ../../testcorenrn_vecevent/neuron/common.hoc | |
| [1449/1694] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc | |
| [1450/1694] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc | |
| [1451/1694] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc | |
| [1452/1694] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc | |
| [1453/1694] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc | |
| [1454/1694] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1455/1694] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc | |
| [1456/1694] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1457/1694] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc | |
| [1458/1694] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc | |
| [1459/1694] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc | |
| [1460/1694] Generating ../../testcorenrn_watch/neuron/common.hoc | |
| [1461/1694] Generating ../../testcorenrn_watch/neuron/defvar.hoc | |
| [1462/1694] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc | |
| [1463/1694] Generating ../../testcorenrn_watch/neuron/testwatch.hoc | |
| [1464/1694] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc | |
| [1465/1694] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc | |
| [1466/1694] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1467/1694] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1468/1694] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc | |
| [1469/1694] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc | |
| [1470/1694] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc | |
| [1471/1694] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc | |
| [1472/1694] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc | |
| [1473/1694] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc | |
| [1474/1694] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc | |
| [1475/1694] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc | |
| [1476/1694] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc | |
| [1477/1694] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc | |
| [1478/1694] Building special[-core] for test group coreneuron_modtests | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30 | |
| cfiles = | |
| Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod" | |
| MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./invlfire.o ./natrans.o ./netmove.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/axial.mod | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/bacur.mod | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/axial_pp.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/banocur.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/fornetcon.mod | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/natrans.mod | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/netmove.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfire.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/sample.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/watchrange.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././axial.mod | |
| -> NMODL .././axial_pp.mod | |
| -> NMODL .././bacur.mod | |
| Translating axial_pp.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/axial_pp.cpp | |
| INCLUDEing axial.inc | |
| Translating bacur.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/bacur.cpp | |
| Thread Safe | |
| Thread Safe | |
| Translating axial.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/axial.cpp | |
| INCLUDEing axial.inc | |
| Thread Safe | |
| -> NMODL .././banocur.mod | |
| -> NMODL .././fornetcon.mod | |
| -> NMODL .././invlfire.mod | |
| Translating banocur.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/banocur.cpp | |
| Notice: This mechanism cannot be used with CVODE | |
| Translating invlfire.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/invlfire.cpp | |
| Thread Safe | |
| Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/fornetcon.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././natrans.mod | |
| -> NMODL .././netmove.mod | |
| -> NMODL .././sample.mod | |
| Translating natrans.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/natrans.cpp | |
| Thread Safe | |
| Translating netmove.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/netmove.cpp | |
| Thread Safe | |
| -> NMODL .././unitstest.mod | |
| Translating sample.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/sample.cpp | |
| Thread Safe | |
| -> NMODL .././version_macros.mod | |
| -> NMODL .././watchrange.mod | |
| Translating unitstest.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/unitstest.cpp | |
| Thread Safe | |
| Translating version_macros.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/version_macros.cpp | |
| Thread Safe | |
| Translating watchrange.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/watchrange.cpp | |
| -> Compiling axial.cpp | |
| Thread Safe | |
| -> Compiling axial_pp.cpp | |
| -> Compiling bacur.cpp | |
| -> Compiling banocur.cpp | |
| -> Compiling fornetcon.cpp | |
| -> Compiling invlfire.cpp | |
| -> Compiling natrans.cpp | |
| -> Compiling netmove.cpp | |
| -> Compiling sample.cpp | |
| -> Compiling unitstest.cpp | |
| -> Compiling version_macros.cpp | |
| -> Compiling watchrange.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1479/1694] Generating coreneuron_modtests/inputpresyn_py/test/coreneuron/test_inputpresyn.py | |
| [1480/1694] Generating coreneuron_modtests/version_macros/test/pytest_coreneuron/test_version_macros.py | |
| [1481/1694] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py | |
| [1482/1694] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py | |
| [1483/1694] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py | |
| [1484/1694] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py | |
| [1485/1694] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py | |
| [1486/1694] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc | |
| [1487/1694] Generating coreneuron_modtests/fast_imem_py_cpu/test/pytest_coreneuron/test_fast_imem.py | |
| [1488/1694] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py | |
| [1489/1694] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py | |
| [1490/1694] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py | |
| [1491/1694] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py | |
| [1492/1694] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py | |
| [1493/1694] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py | |
| [1494/1694] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py | |
| [1495/1694] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py | |
| [1496/1694] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py | |
| [1497/1694] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/common/catch2_main.cpp.o | |
| [1498/1694] Linking CXX executable bin/test/nrn-benchmarks | |
| [1499/1694] Building special[-core] for test group example_nmodl | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2 | |
| cfiles = | |
| Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod" | |
| MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././argpass.mod | |
| -> NMODL .././cabpump.mod | |
| -> NMODL .././cachan.mod | |
| Translating argpass.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp | |
| Translating cachan.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| Thread Safe | |
| Translating cabpump.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp | |
| -> NMODL .././cacum.mod | |
| -> NMODL .././cacur.mod | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| -> NMODL .././cadif.mod | |
| Translating cacur.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp | |
| Translating cacum.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././cadifusl.mod | |
| -> NMODL .././cagk.mod | |
| Translating cadif.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp | |
| Thread Safe | |
| -> NMODL .././cagkftab.mod | |
| Translating cagk.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp | |
| Thread Safe | |
| Translating cadifusl.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| -> NMODL .././capmp.mod | |
| Translating cagkftab.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp | |
| Thread Safe | |
| -> NMODL .././expsynspine.mod | |
| -> NMODL .././fh.mod | |
| Translating fh.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp | |
| INCLUDEing standard.inc | |
| Notice: Assignment to the GLOBAL variable, "inf", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "tau", is not thread safe | |
| -> NMODL .././fit1.mod | |
| Translating expsynspine.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp | |
| Notice: LINEAR is not thread safe. | |
| -> NMODL .././gap.mod | |
| Translating capmp.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp | |
| NEURON's CVode method ignores conservation | |
| Thread Safe | |
| -> NMODL .././hh1.mod | |
| Translating gap.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| Translating fit1.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././hhvect.mod | |
| Translating hh1.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp | |
| Notice: This mechanism cannot be used with CVODE | |
| Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "minf", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe | |
| Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON. | |
| Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON. | |
| Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON. | |
| -> NMODL .././inatest.mod | |
| -> NMODL .././ionleak.mod | |
| Translating hhvect.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp | |
| Notice: This mechanism cannot be used with CVODE | |
| Thread Safe | |
| Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON. | |
| Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON. | |
| Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON. | |
| Translating inatest.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp | |
| Thread Safe | |
| -> NMODL .././nacum.mod | |
| Translating ionleak.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp | |
| Thread Safe | |
| -> NMODL .././nacur.mod | |
| -> NMODL .././nadifl.mod | |
| Translating nacum.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp | |
| Thread Safe | |
| Translating nacur.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp | |
| -> NMODL .././nonlin.mod | |
| Thread Safe | |
| Translating nadifl.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp | |
| Thread Safe | |
| -> NMODL .././obj_ex.mod | |
| -> NMODL .././order.mod | |
| Translating nonlin.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp | |
| Notice: NONLINEAR is not thread safe. | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Translating obj_ex.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp | |
| Translating order.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp | |
| -> NMODL .././passiv.mod | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././rchan.mod | |
| -> NMODL .././stim1.mod | |
| Translating passiv.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp | |
| Thread Safe | |
| Translating stim1.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp | |
| Thread Safe | |
| Translating rchan.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp | |
| Notice: normrand is not thread safe | |
| Notice: This mechanism cannot be used with CVODE | |
| -> NMODL .././str.mod | |
| -> NMODL .././syn1.mod | |
| -> NMODL .././synpre.mod | |
| Translating syn1.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp | |
| Thread Safe | |
| Translating str.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././trivial.mod | |
| -> NMODL .././tstdarray.mod | |
| Translating synpre.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| Notice: VERBATIM blocks are not thread safe | |
| Notice: This mechanism cannot be used with CVODE | |
| -> NMODL .././tstextrn.mod | |
| Translating tstdarray.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp | |
| Thread Safe | |
| -> NMODL .././tstpnt1.mod | |
| Translating tstextrn.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp | |
| Notice: Use of EXTERNAL is not thread safe. | |
| Translating trivial.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp | |
| -> NMODL .././tstpnt2.mod | |
| -> NMODL .././tstvec.mod | |
| -> NMODL .././vclmp1.mod | |
| Translating tstpnt1.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| Translating tstpnt2.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| -> NMODL .././vlag.mod | |
| -> Compiling argpass.cpp | |
| Translating tstvec.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> Compiling cabpump.cpp | |
| Translating vclmp1.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp | |
| Translating vlag.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| Notice: This mechanism cannot be used with CVODE | |
| Notice: LINEAR is not thread safe. | |
| Thread Safe | |
| -> Compiling cachan.cpp | |
| -> Compiling cacum.cpp | |
| -> Compiling cacur.cpp | |
| -> Compiling cadif.cpp | |
| -> Compiling cadifusl.cpp | |
| -> Compiling cagk.cpp | |
| -> Compiling cagkftab.cpp | |
| -> Compiling capmp.cpp | |
| -> Compiling expsynspine.cpp | |
| -> Compiling fh.cpp | |
| -> Compiling fit1.cpp | |
| -> Compiling gap.cpp | |
| -> Compiling hh1.cpp | |
| -> Compiling hhvect.cpp | |
| -> Compiling inatest.cpp | |
| -> Compiling ionleak.cpp | |
| -> Compiling nacum.cpp | |
| -> Compiling nacur.cpp | |
| -> Compiling nadifl.cpp | |
| -> Compiling nonlin.cpp | |
| -> Compiling obj_ex.cpp | |
| -> Compiling order.cpp | |
| -> Compiling passiv.cpp | |
| -> Compiling rchan.cpp | |
| -> Compiling stim1.cpp | |
| -> Compiling str.cpp | |
| -> Compiling syn1.cpp | |
| -> Compiling synpre.cpp | |
| -> Compiling trivial.cpp | |
| -> Compiling tstdarray.cpp | |
| -> Compiling tstextrn.cpp | |
| -> Compiling tstpnt1.cpp | |
| -> Compiling tstpnt2.cpp | |
| -> Compiling tstvec.cpp | |
| -> Compiling vclmp1.cpp | |
| -> Compiling vlag.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1500/1694] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc | |
| [1501/1694] Generating example_nmodl/cadif_hoc/cadif.ses | |
| [1502/1694] Generating example_nmodl/cachan_hoc/cachan.hoc | |
| [1503/1694] Generating example_nmodl/cabpump_hoc/cabpump.hoc | |
| [1504/1694] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc | |
| [1505/1694] Generating example_nmodl/cadif_hoc/cadif.hoc | |
| [1506/1694] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc | |
| [1507/1694] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc | |
| [1508/1694] Generating example_nmodl/cagk_hoc/cagk.hoc | |
| [1509/1694] Generating example_nmodl/capmp_hoc/capmp.hoc | |
| [1510/1694] Generating example_nmodl/cv_hoc/cv.hoc | |
| [1511/1694] Generating example_nmodl/fit1_hoc/fit1.hoc | |
| [1512/1694] Generating example_nmodl/gap_hoc/gap.hoc | |
| [1513/1694] Generating example_nmodl/fh_hoc/fh.hoc | |
| [1514/1694] Generating example_nmodl/hhvect_hoc/hhvect.hoc | |
| [1515/1694] Generating example_nmodl/hh1_hoc/hh1.hoc | |
| [1516/1694] Generating example_nmodl/nacum_hoc/nacum.hoc | |
| [1517/1694] Generating example_nmodl/nadifl2_hoc/nadifl2.ses | |
| [1518/1694] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc | |
| [1519/1694] Generating example_nmodl/nadifl1_hoc/nadifl1.ses | |
| [1520/1694] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc | |
| [1521/1694] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc | |
| [1522/1694] Generating example_nmodl/nadifl3_hoc/nadifl3.ses | |
| [1523/1694] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc | |
| [1524/1694] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc | |
| [1525/1694] Generating example_nmodl/passiv_hoc/passiv.hoc | |
| [1526/1694] Generating example_nmodl/nadifl4_hoc/nadifl4.ses | |
| [1527/1694] Generating example_nmodl/stim1_hoc/stim1.hoc | |
| [1528/1694] Generating example_nmodl/order_hoc/order.hoc | |
| [1529/1694] Generating example_nmodl/syn1_hoc/syn1.hoc | |
| [1530/1694] Generating example_nmodl/synpre_hoc/synpre.hoc | |
| [1531/1694] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc | |
| [1532/1694] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc | |
| [1533/1694] Generating example_nmodl/expsynspine_py/expsynspine.py | |
| [1534/1694] Generating example_nmodl/expsynspine_py/expsynspine.ses | |
| [1535/1694] Generating example_nmodl/cagkftab_py/cagkftab.py | |
| [1536/1694] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc | |
| [1537/1694] Generating example_nmodl/tstvec_hoc/tstvec.hoc | |
| [1538/1694] Generating example_nmodl/nonlin_py/nonlin.py | |
| [1539/1694] Generating example_nmodl/tstpnt2_py/tstpnt2.py | |
| [1540/1694] Generating example_nmodl/tstpnt1_py/tstpnt1.py | |
| [1541/1694] Generating example_nmodl/vlag_py/vlag.py | |
| [1542/1694] Building special[-core] for test group reduced_dentate | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead | |
| cfiles = | |
| Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod" | |
| MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Ca.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_CadepK.mod | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KA.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRf.mod | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRs.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Na.mod | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/CaBK.mod | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_M.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_UK.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_sAHP.mod | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/LcaMig.mod | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_KIn.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_na8st.mod | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse | |
| [NMODL] [info] :: Running sympy solve visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/bgka.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/ccanl.mod | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/gskch.mod | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/ggap.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/holdingi.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/hyperde3.mod | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/ichan2.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/iconc_Ca.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/kcaPR.mod | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/na3n.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/nca.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [warning] :: Can not inline function call to erand | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/spines.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/tca.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod | |
| [NMODL] [info] :: Running symtab visitor | |
| [NMODL] [info] :: Running semantic analysis visitor | |
| [NMODL] [info] :: Running CVode to cnexp visitor | |
| [NMODL] [info] :: Running code compatibility checker | |
| [NMODL] [info] :: Running verbatim rename visitor | |
| [NMODL] [info] :: Running KINETIC block visitor | |
| [NMODL] [info] :: Running STEADYSTATE visitor | |
| [NMODL] [info] :: Parsing Units | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running nmodl inline visitor | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running local variable rename visitor | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| [NMODL] [info] :: Running cnexp visitor | |
| [NMODL] [info] :: Running C++ backend code generator for CoreNEURON | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././Aradi_Ca.mod | |
| -> NMODL .././Aradi_KA.mod | |
| -> NMODL .././Aradi_CadepK.mod | |
| Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp | |
| Thread Safe | |
| Translating Aradi_KA.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp | |
| Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././Aradi_KDRf.mod | |
| -> NMODL .././Aradi_KDRs.mod | |
| -> NMODL .././Aradi_Na.mod | |
| Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp | |
| Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp | |
| Thread Safe | |
| Thread Safe | |
| Translating Aradi_Na.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp | |
| Thread Safe | |
| -> NMODL .././CaBK.mod | |
| -> NMODL .././DGC_M.mod | |
| -> NMODL .././DGC_UK.mod | |
| Translating CaBK.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp | |
| Thread Safe | |
| Translating DGC_M.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp | |
| Thread Safe | |
| -> NMODL .././DGC_sAHP.mod | |
| -> NMODL .././Gfluct3.mod | |
| Translating DGC_UK.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp | |
| Thread Safe | |
| -> NMODL .././LcaMig.mod | |
| Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp | |
| Thread Safe | |
| Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp | |
| -> NMODL .././SH_KIn.mod | |
| Thread Safe | |
| -> NMODL .././SH_na8st.mod | |
| -> NMODL .././bgka.mod | |
| Translating LcaMig.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp | |
| Thread Safe | |
| Translating SH_KIn.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp | |
| -> NMODL .././ccanl.mod | |
| Thread Safe | |
| Translating SH_na8st.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp | |
| Translating bgka.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp | |
| -> NMODL .././ggap.mod | |
| NEURON's CVode method ignores conservation | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././gskch.mod | |
| -> NMODL .././holdingi.mod | |
| Translating ccanl.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp | |
| Thread Safe | |
| Translating ggap.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp | |
| Thread Safe | |
| -> NMODL .././hyperde3.mod | |
| Translating gskch.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp | |
| Translating holdingi.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp | |
| Thread Safe | |
| -> NMODL .././ichan2.mod | |
| Thread Safe | |
| -> NMODL .././iconc_Ca.mod | |
| -> NMODL .././kcaPR.mod | |
| Translating hyperde3.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp | |
| Translating ichan2.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp | |
| Thread Safe | |
| Thread Safe | |
| Translating iconc_Ca.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp | |
| -> NMODL .././na3n.mod | |
| Thread Safe | |
| -> NMODL .././nca.mod | |
| Translating kcaPR.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp | |
| Thread Safe | |
| -> NMODL .././spines.mod | |
| -> NMODL .././tca.mod | |
| Translating na3n.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp | |
| Translating nca.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp | |
| Thread Safe | |
| Thread Safe | |
| Translating spines.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp | |
| Thread Safe | |
| -> NMODL .././vecevent.mod | |
| Translating tca.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp | |
| Thread Safe | |
| -> Compiling Aradi_Ca.cpp | |
| -> Compiling Aradi_CadepK.cpp | |
| -> Compiling Aradi_KA.cpp | |
| Translating vecevent.mod into /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| -> Compiling Aradi_KDRf.cpp | |
| -> Compiling Aradi_KDRs.cpp | |
| -> Compiling Aradi_Na.cpp | |
| -> Compiling CaBK.cpp | |
| -> Compiling DGC_M.cpp | |
| -> Compiling DGC_UK.cpp | |
| -> Compiling DGC_sAHP.cpp | |
| -> Compiling Gfluct3.cpp | |
| -> Compiling LcaMig.cpp | |
| -> Compiling SH_KIn.cpp | |
| -> Compiling SH_na8st.cpp | |
| -> Compiling bgka.cpp | |
| -> Compiling ccanl.cpp | |
| -> Compiling ggap.cpp | |
| -> Compiling gskch.cpp | |
| -> Compiling holdingi.cpp | |
| -> Compiling hyperde3.cpp | |
| -> Compiling ichan2.cpp | |
| -> Compiling iconc_Ca.cpp | |
| -> Compiling kcaPR.cpp | |
| -> Compiling na3n.cpp | |
| -> Compiling nca.cpp | |
| -> Compiling spines.cpp | |
| -> Compiling tca.cpp | |
| -> Compiling vecevent.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1543/1694] Generating ../../reduced_dentate/neuron/commonutils.py | |
| [1544/1694] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat | |
| [1545/1694] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat | |
| [1546/1694] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat | |
| [1547/1694] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat | |
| [1548/1694] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat | |
| [1549/1694] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat | |
| [1550/1694] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat | |
| [1551/1694] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat | |
| [1552/1694] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat | |
| [1553/1694] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat | |
| [1554/1694] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat | |
| [1555/1694] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat | |
| [1556/1694] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat | |
| [1557/1694] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat | |
| [1558/1694] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat | |
| [1559/1694] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat | |
| [1560/1694] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat | |
| [1561/1694] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat | |
| [1562/1694] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat | |
| [1563/1694] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat | |
| [1564/1694] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat | |
| [1565/1694] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat | |
| [1566/1694] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat | |
| [1567/1694] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat | |
| [1568/1694] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat | |
| [1569/1694] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat | |
| [1570/1694] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat | |
| [1571/1694] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat | |
| [1572/1694] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat | |
| [1573/1694] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat | |
| [1574/1694] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat | |
| [1575/1694] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat | |
| [1576/1694] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat | |
| [1577/1694] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat | |
| [1578/1694] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat | |
| [1579/1694] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat | |
| [1580/1694] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat | |
| [1581/1694] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat | |
| [1582/1694] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat | |
| [1583/1694] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat | |
| [1584/1694] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat | |
| [1585/1694] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat | |
| [1586/1694] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat | |
| [1587/1694] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat | |
| [1588/1694] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat | |
| [1589/1694] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat | |
| [1590/1694] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat | |
| [1591/1694] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat | |
| [1592/1694] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat | |
| [1593/1694] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat | |
| [1594/1694] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat | |
| [1595/1694] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat | |
| [1596/1694] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat | |
| [1597/1694] Generating ../../reduced_dentate/neuron/main.hoc | |
| [1598/1694] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat | |
| [1599/1694] Generating ../../reduced_dentate/neuron/lib.hoc | |
| [1600/1694] Generating ../../reduced_dentate/neuron/parameters/Control.hoc | |
| [1601/1694] Generating ../../reduced_dentate/neuron/run.hoc | |
| [1602/1694] Generating ../../reduced_dentate/neuron/templates/DGC.hoc | |
| [1603/1694] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc | |
| [1604/1694] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc | |
| [1605/1694] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc | |
| [1606/1694] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc | |
| [1607/1694] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc | |
| [1608/1694] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc | |
| [1609/1694] Generating ../../reduced_dentate/neuron/templates/Dict.hoc | |
| [1610/1694] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc | |
| [1611/1694] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc | |
| [1612/1694] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc | |
| [1613/1694] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc | |
| [1614/1694] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc | |
| [1615/1694] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc | |
| [1616/1694] Generating ../../reduced_dentate/neuron/templates/Value.hoc | |
| [1617/1694] Generating ../../reduced_dentate/neuron/templates/defvar.hoc | |
| [1618/1694] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc | |
| [1619/1694] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py | |
| [1620/1694] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat | |
| [1621/1694] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat | |
| [1622/1694] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat | |
| [1623/1694] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat | |
| [1624/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat | |
| [1625/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat | |
| [1626/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat | |
| [1627/1694] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat | |
| [1628/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat | |
| [1629/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat | |
| [1630/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat | |
| [1631/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat | |
| [1632/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat | |
| [1633/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat | |
| [1634/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat | |
| [1635/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat | |
| [1636/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat | |
| [1637/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat | |
| [1638/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat | |
| [1639/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat | |
| [1640/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat | |
| [1641/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat | |
| [1642/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat | |
| [1643/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat | |
| [1644/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat | |
| [1645/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat | |
| [1646/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat | |
| [1647/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat | |
| [1648/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat | |
| [1649/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat | |
| [1650/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat | |
| [1651/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat | |
| [1652/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat | |
| [1653/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat | |
| [1654/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat | |
| [1655/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat | |
| [1656/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat | |
| [1657/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat | |
| [1658/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat | |
| [1659/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat | |
| [1660/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat | |
| [1661/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat | |
| [1662/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat | |
| [1663/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat | |
| [1664/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat | |
| [1665/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat | |
| [1666/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat | |
| [1667/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat | |
| [1668/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat | |
| [1669/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat | |
| [1670/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat | |
| [1671/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat | |
| [1672/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat | |
| [1673/1694] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat | |
| [1674/1694] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc | |
| [1675/1694] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc | |
| [1676/1694] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc | |
| [1677/1694] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc | |
| [1678/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc | |
| [1679/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc | |
| [1680/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc | |
| [1681/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc | |
| [1682/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc | |
| [1683/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc | |
| [1684/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc | |
| [1685/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc | |
| [1686/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc | |
| [1687/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc | |
| [1688/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc | |
| [1689/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc | |
| [1690/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc | |
| [1691/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc | |
| [1692/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc | |
| [1693/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc | |
| [1694/1694] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc | |
| [32;1m$ ccache -vs 2>/dev/null[0;m | |
| Cache directory: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/ccache | |
| Config file: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/ccache/ccache.conf | |
| System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf | |
| Stats updated: Fri Dec 8 15:24:39 2023 | |
| Cacheable calls: 511 / 511 (100.0%) | |
| Hits: 0 / 511 ( 0.00%) | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Misses: 511 / 511 (100.0%) | |
| Successful lookups: | |
| Direct: 0 / 511 ( 0.00%) | |
| Preprocessed: 0 / 511 ( 0.00%) | |
| Local storage: | |
| Cache size (GB): 0.28 / 5.00 ( 5.68%) | |
| Files: 1902 | |
| Hits: 0 / 511 ( 0.00%) | |
| Misses: 511 / 511 (100.0%) | |
| Reads: 1022 | |
| Writes: 953 | |
| [32;1m$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg[0;m | |
| [32;1m$ cat src/nrnpython/setup.cfg[0;m | |
| [install] | |
| prefix= | |
| [32;1m$ ctest --output-on-failure[0;m | |
| Test project /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build | |
| Start 219: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 227: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| 1/278 Test #227: testcorenrn_bbcore::coreneuron_cpu_offline::preparation .................. Passed 1.16 sec | |
| Start 233: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 2/278 Test #233: testcorenrn_conc::coreneuron_cpu_offline::preparation .................... Passed 0.34 sec | |
| Start 239: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 3/278 Test #219: external_ringtest::coreneuron_cpu_mpi_offline::preparation ............... Passed 1.76 sec | |
| Start 245: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| 4/278 Test #239: testcorenrn_deriv::coreneuron_cpu_offline::preparation ................... Passed 0.31 sec | |
| Start 251: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 5/278 Test #245: testcorenrn_gf::coreneuron_cpu_offline::preparation ...................... Passed 0.33 sec | |
| Start 256: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 6/278 Test #251: testcorenrn_kin::coreneuron_cpu_offline::preparation ..................... Passed 0.30 sec | |
| Start 138: pyinit::nrniv_py3.10_python_check_sys_path::preparation | |
| 7/278 Test #138: pyinit::nrniv_py3.10_python_check_sys_path::preparation .................. Passed 0.02 sec | |
| Start 140: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation | |
| 8/278 Test #140: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ............... Passed 0.02 sec | |
| Start 142: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation | |
| 9/278 Test #142: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................ Passed 0.02 sec | |
| Start 144: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation | |
| 10/278 Test #144: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation ............. Passed 0.02 sec | |
| Start 146: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation | |
| 11/278 Test #146: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ........... Passed 0.02 sec | |
| Start 148: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation | |
| 12/278 Test #148: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........ Passed 0.02 sec | |
| Start 150: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation | |
| 13/278 Test #150: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ........... Passed 0.02 sec | |
| Start 152: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation | |
| 14/278 Test #152: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........ Passed 0.02 sec | |
| Start 154: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation | |
| 15/278 Test #154: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ...... Passed 0.02 sec | |
| Start 156: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation | |
| 16/278 Test #156: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ... Passed 0.02 sec | |
| Start 158: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation | |
| 17/278 Test #158: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation ....... Passed 0.02 sec | |
| Start 160: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation | |
| 18/278 Test #160: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation .... Passed 0.02 sec | |
| Start 162: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation | |
| 19/278 Test #162: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........ Passed 0.02 sec | |
| Start 164: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation | |
| 20/278 Test #164: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation ..... Passed 0.02 sec | |
| Start 166: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation | |
| 21/278 Test #166: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation ....... Passed 0.02 sec | |
| Start 168: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation | |
| 22/278 Test #168: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation .... Passed 0.02 sec | |
| Start 174: pyinit::nrniv_pydef_python_check_sys_path::preparation | |
| 23/278 Test #174: pyinit::nrniv_pydef_python_check_sys_path::preparation ................... Passed 0.02 sec | |
| Start 176: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation | |
| 24/278 Test #256: testcorenrn_patstim::coreneuron_cpu_offline::preparation ................. Passed 0.35 sec | |
| Start 262: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 25/278 Test #176: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................ Passed 0.02 sec | |
| Start 178: pyinit::nrniv_pydef_python_check_sys_prefix::preparation | |
| 26/278 Test #178: pyinit::nrniv_pydef_python_check_sys_prefix::preparation ................. Passed 0.02 sec | |
| Start 180: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation | |
| 27/278 Test #180: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation .............. Passed 0.02 sec | |
| Start 182: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation | |
| 28/278 Test #182: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............ Passed 0.02 sec | |
| Start 184: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation | |
| 29/278 Test #184: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation ......... Passed 0.05 sec | |
| Start 186: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation | |
| 30/278 Test #186: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............ Passed 0.02 sec | |
| Start 188: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation | |
| 31/278 Test #188: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation ......... Passed 0.02 sec | |
| Start 190: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation | |
| 32/278 Test #190: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation ....... Passed 0.02 sec | |
| Start 192: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation | |
| 33/278 Test #192: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation .... Passed 0.02 sec | |
| Start 194: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation | |
| 34/278 Test #194: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........ Passed 0.02 sec | |
| Start 196: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation | |
| 35/278 Test #196: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation ..... Passed 0.02 sec | |
| Start 198: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation | |
| 36/278 Test #198: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation ......... Passed 0.02 sec | |
| Start 200: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation | |
| 37/278 Test #200: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ...... Passed 0.02 sec | |
| Start 202: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation | |
| 38/278 Test #202: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........ Passed 0.02 sec | |
| Start 204: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation | |
| 39/278 Test #262: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ................. Passed 0.31 sec | |
| Start 274: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 40/278 Test #204: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation ..... Passed 0.02 sec | |
| Start 212: external_ringtest::neuron | |
| 41/278 Test #274: testcorenrn_watch::coreneuron_cpu_offline::preparation ................... Passed 0.32 sec | |
| Start 213: external_ringtest::neuron_mpi | |
| 42/278 Test #213: external_ringtest::neuron_mpi ............................................ Passed 2.41 sec | |
| Start 214: external_ringtest::neuron_mpi_python | |
| 43/278 Test #212: external_ringtest::neuron ................................................ Passed 4.21 sec | |
| Start 223: testcorenrn_bbcore::neuron | |
| 44/278 Test #223: testcorenrn_bbcore::neuron ............................................... Passed 0.31 sec | |
| Start 224: testcorenrn_bbcore::coreneuron_cpu_online | |
| 45/278 Test #224: testcorenrn_bbcore::coreneuron_cpu_online ................................ Passed 0.55 sec | |
| Start 225: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 46/278 Test #214: external_ringtest::neuron_mpi_python ..................................... Passed 2.88 sec | |
| Start 215: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 47/278 Test #225: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ............... Passed 0.65 sec | |
| Start 226: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 48/278 Test #226: testcorenrn_bbcore::coreneuron_cpu_offline ............................... Passed 0.61 sec | |
| Start 229: testcorenrn_conc::neuron | |
| 49/278 Test #229: testcorenrn_conc::neuron ................................................. Passed 0.33 sec | |
| Start 230: testcorenrn_conc::coreneuron_cpu_online | |
| 50/278 Test #230: testcorenrn_conc::coreneuron_cpu_online .................................. Passed 0.57 sec | |
| Start 231: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 51/278 Test #215: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................ Passed 1.84 sec | |
| Start 216: external_ringtest::coreneuron_cpu_mpi | |
| 52/278 Test #231: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ................. Passed 0.63 sec | |
| Start 232: testcorenrn_conc::coreneuron_cpu_offline | |
| 53/278 Test #232: testcorenrn_conc::coreneuron_cpu_offline ................................. Passed 0.27 sec | |
| Start 235: testcorenrn_deriv::neuron | |
| 54/278 Test #216: external_ringtest::coreneuron_cpu_mpi .................................... Passed 0.99 sec | |
| Start 217: external_ringtest::coreneuron_cpu_mpi_python | |
| 55/278 Test #235: testcorenrn_deriv::neuron ................................................ Passed 0.34 sec | |
| Start 236: testcorenrn_deriv::coreneuron_cpu_online | |
| 56/278 Test #236: testcorenrn_deriv::coreneuron_cpu_online ................................. Passed 0.80 sec | |
| Start 237: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 57/278 Test #217: external_ringtest::coreneuron_cpu_mpi_python ............................. Passed 1.38 sec | |
| Start 218: external_ringtest::coreneuron_cpu_mpi_offline | |
| 58/278 Test #237: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................ Passed 0.63 sec | |
| Start 238: testcorenrn_deriv::coreneuron_cpu_offline | |
| 59/278 Test #238: testcorenrn_deriv::coreneuron_cpu_offline ................................ Passed 0.26 sec | |
| Start 247: testcorenrn_kin::neuron | |
| 60/278 Test #218: external_ringtest::coreneuron_cpu_mpi_offline ............................ Passed 0.54 sec | |
| Start 241: testcorenrn_gf::neuron | |
| 61/278 Test #247: testcorenrn_kin::neuron .................................................. Passed 0.31 sec | |
| Start 248: testcorenrn_kin::coreneuron_cpu_online | |
| 62/278 Test #248: testcorenrn_kin::coreneuron_cpu_online ................................... Passed 0.57 sec | |
| Start 249: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 63/278 Test #249: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate .................. Passed 0.61 sec | |
| Start 250: testcorenrn_kin::coreneuron_cpu_offline | |
| 64/278 Test #250: testcorenrn_kin::coreneuron_cpu_offline .................................. Passed 0.27 sec | |
| Start 1: cmd_interface_test | |
| 65/278 Test #1: cmd_interface_test ....................................................... Passed 0.36 sec | |
| Start 2: interleave_info_constructor_test | |
| 66/278 Test #241: testcorenrn_gf::neuron ................................................... Passed 2.04 sec | |
| Start 242: testcorenrn_gf::coreneuron_cpu_online | |
| 67/278 Test #2: interleave_info_constructor_test ......................................... Passed 0.22 sec | |
| Start 3: alignment_test | |
| 68/278 Test #3: alignment_test ........................................................... Passed 0.22 sec | |
| Start 4: queuing_test | |
| 69/278 Test #4: queuing_test ............................................................. Passed 0.22 sec | |
| Start 5: test-solver | |
| 70/278 Test #242: testcorenrn_gf::coreneuron_cpu_online .................................... Passed 0.72 sec | |
| Start 243: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 71/278 Test #5: test-solver .............................................................. Passed 0.32 sec | |
| Start 6: lfp_test | |
| 72/278 Test #6: lfp_test ................................................................. Passed 0.44 sec | |
| Start 7: unit_tests::testneuron | |
| 73/278 Test #7: unit_tests::testneuron ................................................... Passed 0.29 sec | |
| Start 8: unit_tests::testneuron_soa_erase_calls_terminate | |
| 74/278 Test #8: unit_tests::testneuron_soa_erase_calls_terminate ......................... Passed 0.10 sec | |
| Start 9: ringtest | |
| 75/278 Test #9: ringtest ................................................................. Passed 0.51 sec | |
| Start 10: connect_dend | |
| 76/278 Test #10: connect_dend ............................................................. Passed 0.17 sec | |
| Start 11: mpi_init::nrniv_mpiopt | |
| 77/278 Test #243: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ................... Passed 1.86 sec | |
| Start 244: testcorenrn_gf::coreneuron_cpu_offline | |
| 78/278 Test #11: mpi_init::nrniv_mpiopt ................................................... Passed 0.32 sec | |
| Start 12: mpi_init::nrniv_nrnmpi_init | |
| 79/278 Test #244: testcorenrn_gf::coreneuron_cpu_offline ................................... Passed 0.38 sec | |
| Start 253: testcorenrn_patstim::neuron | |
| 80/278 Test #12: mpi_init::nrniv_nrnmpi_init .............................................. Passed 0.32 sec | |
| Start 13: mpi_init::python_nrnmpi_init | |
| 81/278 Test #253: testcorenrn_patstim::neuron .............................................. Passed 0.54 sec | |
| Start 254: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 82/278 Test #13: mpi_init::python_nrnmpi_init ............................................. Passed 0.74 sec | |
| Start 14: mpi_init::python_mpienv | |
| 83/278 Test #254: testcorenrn_patstim::coreneuron_cpu_offline_saverestore .................. Passed 1.00 sec | |
| Start 255: testcorenrn_patstim::coreneuron_cpu_offline | |
| 84/278 Test #14: mpi_init::python_mpienv .................................................. Passed 0.72 sec | |
| Start 15: mpi_init::nrniv_mpiexec_mpiopt | |
| 85/278 Test #15: mpi_init::nrniv_mpiexec_mpiopt ........................................... Passed 0.25 sec | |
| Start 16: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 86/278 Test #255: testcorenrn_patstim::coreneuron_cpu_offline .............................. Passed 0.27 sec | |
| Start 258: testcorenrn_vecplay::neuron | |
| 87/278 Test #16: mpi_init::nrniv_mpiexec_nrnmpi_init ...................................... Passed 0.25 sec | |
| Start 17: mpi_init::python_mpiexec_nrnmpi_init | |
| 88/278 Test #258: testcorenrn_vecplay::neuron .............................................. Passed 0.36 sec | |
| Start 259: testcorenrn_vecplay::coreneuron_cpu_online | |
| 89/278 Test #17: mpi_init::python_mpiexec_nrnmpi_init ..................................... Passed 0.79 sec | |
| Start 18: mpi_init::python_mpiexec_mpienv | |
| 90/278 Test #259: testcorenrn_vecplay::coreneuron_cpu_online ............................... Passed 0.75 sec | |
| Start 260: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 91/278 Test #18: mpi_init::python_mpiexec_mpienv .......................................... Passed 0.83 sec | |
| Start 19: unit_tests::python_unit_tests | |
| 92/278 Test #260: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate .............. Passed 0.83 sec | |
| Start 261: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 93/278 Test #261: testcorenrn_vecplay::coreneuron_cpu_offline .............................. Passed 0.29 sec | |
| Start 270: testcorenrn_watch::neuron | |
| 94/278 Test #19: unit_tests::python_unit_tests ............................................ Passed 0.70 sec | |
| Start 20: pytest::basic_tests_py3.10 | |
| 95/278 Test #270: testcorenrn_watch::neuron ................................................ Passed 0.56 sec | |
| Start 271: testcorenrn_watch::coreneuron_cpu_online | |
| 96/278 Test #20: pytest::basic_tests_py3.10 ............................................... Passed 0.78 sec | |
| Start 21: pytest_coreneuron::basic_tests_py3.10 | |
| 97/278 Test #271: testcorenrn_watch::coreneuron_cpu_online ................................. Passed 0.74 sec | |
| Start 272: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 98/278 Test #272: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................ Passed 0.91 sec | |
| Start 273: testcorenrn_watch::coreneuron_cpu_offline | |
| 99/278 Test #273: testcorenrn_watch::coreneuron_cpu_offline ................................ Passed 0.28 sec | |
| Start 276: testcorenrn_netstimdirect::direct_netstimdirect | |
| 100/278 Test #276: testcorenrn_netstimdirect::direct_netstimdirect .......................... Passed 1.08 sec | |
| Start 277: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 101/278 Test #277: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ......... Passed 0.88 sec | |
| Start 22: datahandle::datahandle_tests | |
| Start 23: coverage_tests::cover_tests | |
| 102/278 Test #22: datahandle::datahandle_tests ............................................. Passed 0.88 sec | |
| Start 24: example_nmodl::ca_ap_hoc | |
| 103/278 Test #23: coverage_tests::cover_tests .............................................. Passed 1.04 sec | |
| Start 25: example_nmodl::cabpump_hoc | |
| 104/278 Test #24: example_nmodl::ca_ap_hoc ................................................. Passed 0.46 sec | |
| Start 26: example_nmodl::cachan_hoc | |
| 105/278 Test #25: example_nmodl::cabpump_hoc ............................................... Passed 0.35 sec | |
| Start 27: example_nmodl::cadif_hoc | |
| 106/278 Test #26: example_nmodl::cachan_hoc ................................................ Passed 0.14 sec | |
| Start 28: example_nmodl::cadifusl_hoc | |
| 107/278 Test #27: example_nmodl::cadif_hoc ................................................. Passed 0.18 sec | |
| Start 29: example_nmodl::cadifusl1_hoc | |
| 108/278 Test #21: pytest_coreneuron::basic_tests_py3.10 .................................... Passed 4.94 sec | |
| Start 30: example_nmodl::cadifusl2_hoc | |
| 109/278 Test #28: example_nmodl::cadifusl_hoc .............................................. Passed 0.20 sec | |
| Start 31: example_nmodl::cagk_hoc | |
| 110/278 Test #30: example_nmodl::cadifusl2_hoc ............................................. Passed 0.17 sec | |
| Start 32: example_nmodl::capmp_hoc | |
| 111/278 Test #31: example_nmodl::cagk_hoc .................................................. Passed 0.14 sec | |
| Start 33: example_nmodl::cv_hoc | |
| 112/278 Test #29: example_nmodl::cadifusl1_hoc ............................................. Passed 0.29 sec | |
| Start 34: example_nmodl::fh_hoc | |
| 113/278 Test #33: example_nmodl::cv_hoc .................................................... Passed 0.13 sec | |
| Start 35: example_nmodl::fit1_hoc | |
| 114/278 Test #34: example_nmodl::fh_hoc .................................................... Passed 0.14 sec | |
| Start 36: example_nmodl::gap_hoc | |
| 115/278 Test #32: example_nmodl::capmp_hoc ................................................. Passed 0.25 sec | |
| Start 37: example_nmodl::hh1_hoc | |
| 116/278 Test #35: example_nmodl::fit1_hoc .................................................. Passed 0.14 sec | |
| Start 38: example_nmodl::hhvect_hoc | |
| 117/278 Test #36: example_nmodl::gap_hoc ................................................... Passed 0.15 sec | |
| Start 39: example_nmodl::nacum_hoc | |
| 118/278 Test #37: example_nmodl::hh1_hoc ................................................... Passed 0.14 sec | |
| Start 40: example_nmodl::nadifl1_hoc | |
| 119/278 Test #38: example_nmodl::hhvect_hoc ................................................ Passed 0.15 sec | |
| Start 41: example_nmodl::nadifl2_hoc | |
| 120/278 Test #39: example_nmodl::nacum_hoc ................................................. Passed 0.14 sec | |
| Start 42: example_nmodl::nadifl3_hoc | |
| 121/278 Test #40: example_nmodl::nadifl1_hoc ............................................... Passed 0.16 sec | |
| Start 43: example_nmodl::nadifl4_hoc | |
| 122/278 Test #41: example_nmodl::nadifl2_hoc ............................................... Passed 0.17 sec | |
| Start 44: example_nmodl::obj_ex_hoc | |
| 123/278 Test #42: example_nmodl::nadifl3_hoc ............................................... Passed 0.17 sec | |
| Start 45: example_nmodl::order_hoc | |
| 124/278 Test #43: example_nmodl::nadifl4_hoc ............................................... Passed 0.17 sec | |
| Start 46: example_nmodl::passiv_hoc | |
| 125/278 Test #44: example_nmodl::obj_ex_hoc ................................................ Passed 0.14 sec | |
| Start 47: example_nmodl::stim1_hoc | |
| 126/278 Test #45: example_nmodl::order_hoc ................................................. Passed 0.17 sec | |
| Start 48: example_nmodl::syn1_hoc | |
| 127/278 Test #46: example_nmodl::passiv_hoc ................................................ Passed 0.14 sec | |
| Start 49: example_nmodl::synpre_hoc | |
| 128/278 Test #47: example_nmodl::stim1_hoc ................................................. Passed 0.14 sec | |
| Start 50: example_nmodl::tstextrn_hoc | |
| 129/278 Test #48: example_nmodl::syn1_hoc .................................................. Passed 0.14 sec | |
| Start 51: example_nmodl::tstpnt1_hoc | |
| 130/278 Test #49: example_nmodl::synpre_hoc ................................................ Passed 0.21 sec | |
| Start 52: example_nmodl::tstpnt2_hoc | |
| 131/278 Test #50: example_nmodl::tstextrn_hoc .............................................. Passed 0.14 sec | |
| Start 53: example_nmodl::tstvec_hoc | |
| 132/278 Test #51: example_nmodl::tstpnt1_hoc ............................................... Passed 0.14 sec | |
| Start 54: example_nmodl::cagkftab_py | |
| 133/278 Test #52: example_nmodl::tstpnt2_hoc ............................................... Passed 0.14 sec | |
| Start 55: example_nmodl::expsynspine_py | |
| 134/278 Test #53: example_nmodl::tstvec_hoc ................................................ Passed 0.14 sec | |
| Start 56: example_nmodl::nonlin_py | |
| 135/278 Test #55: example_nmodl::expsynspine_py ............................................ Passed 0.70 sec | |
| Start 57: example_nmodl::tstpnt1_py | |
| 136/278 Test #57: example_nmodl::tstpnt1_py ................................................ Passed 0.51 sec | |
| Start 58: example_nmodl::tstpnt2_py | |
| 137/278 Test #58: example_nmodl::tstpnt2_py ................................................ Passed 0.52 sec | |
| Start 59: example_nmodl::vlag_py | |
| 138/278 Test #59: example_nmodl::vlag_py ................................................... Passed 0.57 sec | |
| Start 60: hoctests::test_loadbal_hoc | |
| 139/278 Test #56: example_nmodl::nonlin_py ................................................. Passed 2.62 sec | |
| Start 61: hoctests::perf1_hoc | |
| 140/278 Test #60: hoctests::test_loadbal_hoc ............................................... Passed 0.40 sec | |
| Start 62: hoctests::test1_hoc | |
| 141/278 Test #62: hoctests::test1_hoc ...................................................... Passed 0.37 sec | |
| Start 63: hoctests::test2_hoc | |
| 142/278 Test #63: hoctests::test2_hoc ...................................................... Passed 0.21 sec | |
| Start 64: hoctests::test3_hoc | |
| 143/278 Test #64: hoctests::test3_hoc ...................................................... Passed 0.16 sec | |
| Start 65: hoctests::test4_hoc | |
| 144/278 Test #65: hoctests::test4_hoc ...................................................... Passed 0.14 sec | |
| Start 66: hoctests::test5_hoc | |
| 145/278 Test #66: hoctests::test5_hoc ...................................................... Passed 0.15 sec | |
| Start 67: hoctests::test6_hoc | |
| 146/278 Test #67: hoctests::test6_hoc ...................................................... Passed 0.15 sec | |
| Start 68: hoctests::test7_hoc | |
| 147/278 Test #68: hoctests::test7_hoc ...................................................... Passed 0.15 sec | |
| Start 69: hoctests::test8_hoc | |
| 148/278 Test #61: hoctests::perf1_hoc ...................................................... Passed 1.52 sec | |
| Start 70: hoctests::test9_hoc | |
| 149/278 Test #69: hoctests::test8_hoc ...................................................... Passed 0.15 sec | |
| Start 71: hoctests::test_cvinterp_py | |
| 150/278 Test #70: hoctests::test9_hoc ...................................................... Passed 0.15 sec | |
| Start 72: hoctests::test_hocGUI2_py | |
| 151/278 Test #54: example_nmodl::cagkftab_py ............................................... Passed 4.43 sec | |
| Start 73: hoctests::test_kschan_py | |
| 152/278 Test #71: hoctests::test_cvinterp_py ............................................... Passed 0.80 sec | |
| Start 74: hoctests::test_mechfunc_py | |
| 153/278 Test #72: hoctests::test_hocGUI2_py ................................................ Passed 0.86 sec | |
| Start 75: hoctests::test_mode_py | |
| 154/278 Test #73: hoctests::test_kschan_py ................................................. Passed 0.92 sec | |
| Start 76: hoctests::test_neurondemo_py | |
| 155/278 Test #74: hoctests::test_mechfunc_py ............................................... Passed 0.93 sec | |
| Start 77: hoctests::test_nrniv-launch_py | |
| 156/278 Test #75: hoctests::test_mode_py ................................................... Passed 0.86 sec | |
| Start 78: hoctests::test_setdata_py | |
| 157/278 Test #76: hoctests::test_neurondemo_py ............................................. Passed 0.80 sec | |
| Start 79: hoctests::test_shape_py | |
| 158/278 Test #77: hoctests::test_nrniv-launch_py ........................................... Passed 0.44 sec | |
| Start 80: hoctests::test_thread_partition_py | |
| 159/278 Test #78: hoctests::test_setdata_py ................................................ Passed 0.83 sec | |
| Start 81: hoctests::test1_py | |
| 160/278 Test #79: hoctests::test_shape_py .................................................. Passed 0.88 sec | |
| Start 82: hoctests::test2_py | |
| 161/278 Test #80: hoctests::test_thread_partition_py ....................................... Passed 1.06 sec | |
| Start 83: hoctests::test9_py | |
| 162/278 Test #81: hoctests::test1_py ....................................................... Passed 0.79 sec | |
| Start 89: coreneuron_standalone::test_nrn_corenrn_standalone | |
| 163/278 Test #82: hoctests::test2_py ....................................................... Passed 0.82 sec | |
| Start 90: nmodl_tests::test_table | |
| 164/278 Test #83: hoctests::test9_py ....................................................... Passed 0.79 sec | |
| Start 91: nmodl_tests::test_disc | |
| 165/278 Test #90: nmodl_tests::test_table .................................................. Passed 1.03 sec | |
| Start 92: nmodl_tests::test_function_table | |
| 166/278 Test #89: coreneuron_standalone::test_nrn_corenrn_standalone ....................... Passed 1.45 sec | |
| Start 93: nmodl_tests::test_kinetic | |
| 167/278 Test #91: nmodl_tests::test_disc ................................................... Passed 0.96 sec | |
| Start 94: coreneuron_modtests::version_macros | |
| 168/278 Test #92: nmodl_tests::test_function_table ......................................... Passed 0.90 sec | |
| Start 96: coreneuron_modtests::fornetcon_py_cpu | |
| 169/278 Test #93: nmodl_tests::test_kinetic ................................................ Passed 1.09 sec | |
| Start 97: coreneuron_modtests::direct_py_cpu | |
| 170/278 Test #94: coreneuron_modtests::version_macros ...................................... Passed 1.53 sec | |
| Start 98: coreneuron_modtests::direct_hoc_cpu | |
| 171/278 Test #96: coreneuron_modtests::fornetcon_py_cpu .................................... Passed 1.08 sec | |
| Start 99: coreneuron_modtests::spikes_py_cpu | |
| 172/278 Test #97: coreneuron_modtests::direct_py_cpu ....................................... Passed 1.02 sec | |
| Start 100: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 173/278 Test #98: coreneuron_modtests::direct_hoc_cpu ...................................... Passed 0.87 sec | |
| Start 101: coreneuron_modtests::fast_imem_py_cpu | |
| 174/278 Test #99: coreneuron_modtests::spikes_py_cpu ....................................... Passed 1.19 sec | |
| Start 102: coreneuron_modtests::datareturn_py_cpu | |
| 175/278 Test #100: coreneuron_modtests::spikes_file_mode_py_cpu ............................. Passed 1.11 sec | |
| Start 103: coreneuron_modtests::test_units_py_cpu | |
| 176/278 Test #101: coreneuron_modtests::fast_imem_py_cpu .................................... Passed 1.55 sec | |
| Start 104: coreneuron_modtests::test_netmove_py_cpu | |
| 177/278 Test #103: coreneuron_modtests::test_units_py_cpu ................................... Passed 0.89 sec | |
| Start 105: coreneuron_modtests::test_pointer_py_cpu | |
| 178/278 Test #102: coreneuron_modtests::datareturn_py_cpu ................................... Passed 1.78 sec | |
| Start 106: coreneuron_modtests::test_watchrange_py_cpu | |
| 179/278 Test #106: coreneuron_modtests::test_watchrange_py_cpu .............................. Passed 0.75 sec | |
| Start 107: coreneuron_modtests::test_psolve_py_cpu | |
| 180/278 Test #104: coreneuron_modtests::test_netmove_py_cpu ................................. Passed 1.45 sec | |
| Start 108: coreneuron_modtests::test_ba_py_cpu | |
| 181/278 Test #108: coreneuron_modtests::test_ba_py_cpu ...................................... Passed 0.78 sec | |
| Start 109: coreneuron_modtests::test_natrans_py_cpu | |
| 182/278 Test #107: coreneuron_modtests::test_psolve_py_cpu .................................. Passed 0.95 sec | |
| Start 112: nmodl_tests_coreneuron::test_table_coreneuron_cpu | |
| 183/278 Test #109: coreneuron_modtests::test_natrans_py_cpu ................................. Passed 0.94 sec | |
| Start 113: nmodl_tests_coreneuron::test_disc_coreneuron_cpu | |
| 184/278 Test #112: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................ Passed 0.91 sec | |
| Start 114: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu | |
| 185/278 Test #105: coreneuron_modtests::test_pointer_py_cpu ................................. Passed 3.20 sec | |
| Start 115: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu | |
| 186/278 Test #113: nmodl_tests_coreneuron::test_disc_coreneuron_cpu ......................... Passed 0.93 sec | |
| Start 116: modlunit_unitstest | |
| 187/278 Test #115: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ...................... Passed 0.92 sec | |
| Start 117: modlunit_hh | |
| 188/278 Test #114: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ............... Passed 0.93 sec | |
| Start 118: modlunit_stim | |
| 189/278 Test #118: modlunit_stim ............................................................ Passed 0.12 sec | |
| Start 119: modlunit_pattern | |
| 190/278 Test #116: modlunit_unitstest ....................................................... Passed 0.22 sec | |
| Start 120: pyinit::nrniv_script.py | |
| 191/278 Test #117: modlunit_hh .............................................................. Passed 0.14 sec | |
| Start 121: pyinit::nrniv_script.py_error | |
| 192/278 Test #119: modlunit_pattern ......................................................... Passed 0.09 sec | |
| Start 122: pyinit::nrniv_two_scripts.py | |
| 193/278 Test #121: pyinit::nrniv_script.py_error ............................................ Passed 0.13 sec | |
| Start 123: pyinit::nrniv_two_scripts.py_error_check_code | |
| 194/278 Test #120: pyinit::nrniv_script.py .................................................. Passed 0.16 sec | |
| Start 124: pyinit::nrniv_two_scripts.py_error_check_output | |
| 195/278 Test #122: pyinit::nrniv_two_scripts.py ............................................. Passed 0.14 sec | |
| Start 125: pyinit::nrniv_python_command | |
| 196/278 Test #124: pyinit::nrniv_two_scripts.py_error_check_output .......................... Passed 0.13 sec | |
| Start 126: pyinit::nrniv_python_command_error | |
| 197/278 Test #123: pyinit::nrniv_two_scripts.py_error_check_code ............................ Passed 0.14 sec | |
| Start 127: pyinit::nrniv_python_script.py | |
| 198/278 Test #125: pyinit::nrniv_python_command ............................................. Passed 0.14 sec | |
| Start 128: pyinit::nrniv_python_script.py_error | |
| 199/278 Test #126: pyinit::nrniv_python_command_error ....................................... Passed 0.14 sec | |
| Start 129: pyinit::nrniv_python_command_twice | |
| 200/278 Test #127: pyinit::nrniv_python_script.py ........................................... Passed 0.14 sec | |
| Start 130: pyinit::nrniv_python_script.py_twice | |
| 201/278 Test #128: pyinit::nrniv_python_script.py_error ..................................... Passed 0.14 sec | |
| Start 131: pyinit::nrniv_python_command_args | |
| 202/278 Test #130: pyinit::nrniv_python_script.py_twice ..................................... Passed 0.14 sec | |
| Start 132: pyinit::nrniv_python_script.py_args | |
| 203/278 Test #129: pyinit::nrniv_python_command_twice ....................................... Passed 0.14 sec | |
| Start 133: pyinit::nrniv_nopython_PythonObject | |
| 204/278 Test #131: pyinit::nrniv_python_command_args ........................................ Passed 0.14 sec | |
| Start 134: pyinit::nrniv_nopython_PythonObject_pyexe | |
| 205/278 Test #133: pyinit::nrniv_nopython_PythonObject ...................................... Passed 0.12 sec | |
| Start 135: pyinit::nrniv_nopython_PythonObject_pyenv | |
| 206/278 Test #132: pyinit::nrniv_python_script.py_args ...................................... Passed 0.14 sec | |
| Start 136: pyinit::nrniv_py3.10_python_command_version_check | |
| 207/278 Test #134: pyinit::nrniv_nopython_PythonObject_pyexe ................................ Passed 0.12 sec | |
| Start 137: pyinit::nrniv_py3.10_python_check_sys_path | |
| 208/278 Test #135: pyinit::nrniv_nopython_PythonObject_pyenv ................................ Passed 0.12 sec | |
| Start 139: pyinit::nrniv_py3.10_nrnpython_check_sys_path | |
| 209/278 Test #136: pyinit::nrniv_py3.10_python_command_version_check ........................ Passed 0.13 sec | |
| Start 141: pyinit::nrniv_py3.10_python_check_sys_prefix | |
| 210/278 Test #137: pyinit::nrniv_py3.10_python_check_sys_path ............................... Passed 0.14 sec | |
| Start 143: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix | |
| 211/278 Test #139: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................ Passed 0.14 sec | |
| Start 145: pyinit::nrniv_py3.10_python_check_sys_exec_prefix | |
| 212/278 Test #141: pyinit::nrniv_py3.10_python_check_sys_prefix ............................. Passed 0.14 sec | |
| Start 147: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix | |
| 213/278 Test #143: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix .......................... Passed 0.14 sec | |
| Start 149: pyinit::nrniv_py3.10_python_check_sys_base_prefix | |
| 214/278 Test #145: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................ Passed 0.14 sec | |
| Start 151: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix | |
| 215/278 Test #147: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix ..................... Passed 0.14 sec | |
| Start 153: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix | |
| 216/278 Test #149: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................ Passed 0.16 sec | |
| Start 155: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix | |
| 217/278 Test #151: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix ..................... Passed 0.14 sec | |
| Start 157: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding | |
| 218/278 Test #153: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ................... Passed 0.14 sec | |
| Start 159: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding | |
| 219/278 Test #155: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................ Passed 0.15 sec | |
| Start 161: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding | |
| 220/278 Test #157: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding .................... Passed 0.14 sec | |
| Start 163: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding | |
| 221/278 Test #159: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding ................. Passed 0.14 sec | |
| Start 165: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding | |
| 222/278 Test #161: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding ..................... Passed 0.15 sec | |
| Start 167: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding | |
| 223/278 Test #163: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding .................. Passed 0.15 sec | |
| Start 169: pyinit::nrniv_py3.10_python_command_import_neuron | |
| 224/278 Test #165: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding .................... Passed 0.15 sec | |
| Start 170: pyinit::py3.10_command_import_neuron | |
| 225/278 Test #167: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding ................. Passed 0.15 sec | |
| Start 171: pyinit::nrniv_py3.10_hoc_command_nrnpython | |
| 226/278 Test #171: pyinit::nrniv_py3.10_hoc_command_nrnpython ............................... Passed 0.31 sec | |
| Start 172: pyinit::nrniv_pydef_python_command_version_check | |
| 227/278 Test #172: pyinit::nrniv_pydef_python_command_version_check ......................... Passed 0.17 sec | |
| Start 173: pyinit::nrniv_pydef_python_check_sys_path | |
| 228/278 Test #169: pyinit::nrniv_py3.10_python_command_import_neuron ........................ Passed 0.67 sec | |
| Start 175: pyinit::nrniv_pydef_nrnpython_check_sys_path | |
| 229/278 Test #170: pyinit::py3.10_command_import_neuron ..................................... Passed 0.68 sec | |
| Start 177: pyinit::nrniv_pydef_python_check_sys_prefix | |
| 230/278 Test #173: pyinit::nrniv_pydef_python_check_sys_path ................................ Passed 0.16 sec | |
| Start 179: pyinit::nrniv_pydef_nrnpython_check_sys_prefix | |
| 231/278 Test #175: pyinit::nrniv_pydef_nrnpython_check_sys_path ............................. Passed 0.15 sec | |
| Start 181: pyinit::nrniv_pydef_python_check_sys_exec_prefix | |
| 232/278 Test #177: pyinit::nrniv_pydef_python_check_sys_prefix .............................. Passed 0.15 sec | |
| Start 183: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix | |
| 233/278 Test #179: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ........................... Passed 0.15 sec | |
| Start 185: pyinit::nrniv_pydef_python_check_sys_base_prefix | |
| 234/278 Test #181: pyinit::nrniv_pydef_python_check_sys_exec_prefix ......................... Passed 0.14 sec | |
| Start 187: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix | |
| 235/278 Test #183: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ...................... Passed 0.15 sec | |
| Start 189: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix | |
| 236/278 Test #185: pyinit::nrniv_pydef_python_check_sys_base_prefix ......................... Passed 0.15 sec | |
| Start 191: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix | |
| 237/278 Test #187: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ...................... Passed 0.15 sec | |
| Start 193: pyinit::nrniv_pydef_python_check_sys_stderr.encoding | |
| 238/278 Test #189: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix .................... Passed 0.14 sec | |
| Start 195: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding | |
| 239/278 Test #191: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix ................. Passed 0.15 sec | |
| Start 197: pyinit::nrniv_pydef_python_check_sys_stdin.encoding | |
| 240/278 Test #193: pyinit::nrniv_pydef_python_check_sys_stderr.encoding ..................... Passed 0.15 sec | |
| Start 199: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding | |
| 241/278 Test #195: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding .................. Passed 0.15 sec | |
| Start 201: pyinit::nrniv_pydef_python_check_sys_stdout.encoding | |
| 242/278 Test #197: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ...................... Passed 0.15 sec | |
| Start 203: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding | |
| 243/278 Test #199: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ................... Passed 0.15 sec | |
| Start 205: pyinit::nrniv_pydef_python_command_import_neuron | |
| 244/278 Test #201: pyinit::nrniv_pydef_python_check_sys_stdout.encoding ..................... Passed 0.14 sec | |
| Start 206: pyinit::pydef_command_import_neuron | |
| 245/278 Test #203: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding .................. Passed 0.15 sec | |
| Start 207: pyinit::nrniv_pydef_hoc_command_nrnpython | |
| 246/278 Test #207: pyinit::nrniv_pydef_hoc_command_nrnpython ................................ Passed 0.28 sec | |
| Start 208: external_nrntest | |
| 247/278 Test #205: pyinit::nrniv_pydef_python_command_import_neuron ......................... Passed 0.70 sec | |
| Start 228: testcorenrn_bbcore::compare_results | |
| 248/278 Test #206: pyinit::pydef_command_import_neuron ...................................... Passed 0.68 sec | |
| Start 234: testcorenrn_conc::compare_results | |
| 249/278 Test #234: testcorenrn_conc::compare_results ........................................ Passed 0.14 sec | |
| Start 240: testcorenrn_deriv::compare_results | |
| 250/278 Test #228: testcorenrn_bbcore::compare_results ...................................... Passed 0.14 sec | |
| Start 246: testcorenrn_gf::compare_results | |
| 251/278 Test #240: testcorenrn_deriv::compare_results ....................................... Passed 0.03 sec | |
| Start 252: testcorenrn_kin::compare_results | |
| 252/278 Test #246: testcorenrn_gf::compare_results .......................................... Passed 0.03 sec | |
| Start 257: testcorenrn_patstim::compare_results | |
| 253/278 Test #252: testcorenrn_kin::compare_results ......................................... Passed 0.02 sec | |
| Start 263: testcorenrn_vecplay::compare_results | |
| 254/278 Test #257: testcorenrn_patstim::compare_results ..................................... Passed 0.02 sec | |
| Start 275: testcorenrn_watch::compare_results | |
| 255/278 Test #263: testcorenrn_vecplay::compare_results ..................................... Passed 0.02 sec | |
| Start 278: testcorenrn_netstimdirect::compare_results | |
| 256/278 Test #275: testcorenrn_watch::compare_results ....................................... Passed 0.02 sec | |
| 257/278 Test #278: testcorenrn_netstimdirect::compare_results ............................... Passed 0.02 sec | |
| Start 85: parallel::partrans | |
| 258/278 Test #85: parallel::partrans ....................................................... Passed 1.05 sec | |
| Start 86: parallel::netpar | |
| 259/278 Test #86: parallel::netpar ......................................................... Passed 0.90 sec | |
| Start 87: parallel::bas | |
| 260/278 Test #87: parallel::bas ............................................................ Passed 3.70 sec | |
| Start 88: parallel::nrntest_fast | |
| 261/278 Test #88: parallel::nrntest_fast ................................................... Passed 1.37 sec | |
| Start 95: coreneuron_modtests::inputpresyn_py | |
| 262/278 Test #95: coreneuron_modtests::inputpresyn_py ...................................... Passed 0.91 sec | |
| Start 110: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 263/278 Test #110: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ......................... Passed 1.10 sec | |
| 264/278 Test #208: external_nrntest ......................................................... Passed 44.64 sec | |
| Start 268: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 265/278 Test #268: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................ Passed 0.35 sec | |
| Start 209: reduced_dentate::neuron | |
| 266/278 Test #209: reduced_dentate::neuron .................................................. Passed 85.72 sec | |
| Start 210: reduced_dentate::coreneuron_cpu | |
| 267/278 Test #210: reduced_dentate::coreneuron_cpu .......................................... Passed 109.59 sec | |
| Start 220: external_ringtest::coreneuron_cpu_mpi_threads | |
| 268/278 Test #220: external_ringtest::coreneuron_cpu_mpi_threads ............................ Passed 1.59 sec | |
| Start 221: external_ringtest::coreneuron_cpu_mpi_threads_python | |
| 269/278 Test #221: external_ringtest::coreneuron_cpu_mpi_threads_python ..................... Passed 1.88 sec | |
| Start 264: testcorenrn_vecevent::neuron | |
| 270/278 Test #264: testcorenrn_vecevent::neuron ............................................. Passed 0.63 sec | |
| Start 265: testcorenrn_vecevent::coreneuron_cpu_online | |
| 271/278 Test #265: testcorenrn_vecevent::coreneuron_cpu_online .............................. Passed 1.35 sec | |
| Start 266: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 272/278 Test #266: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ............. Passed 1.22 sec | |
| Start 267: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 273/278 Test #267: testcorenrn_vecevent::coreneuron_cpu_offline ............................. Passed 0.38 sec | |
| Start 84: parallel::subworld | |
| 274/278 Test #84: parallel::subworld ....................................................... Passed 1.44 sec | |
| Start 111: coreneuron_modtests::test_subworlds_py_cpu | |
| 275/278 Test #111: coreneuron_modtests::test_subworlds_py_cpu ............................... Passed 2.19 sec | |
| Start 211: reduced_dentate::compare_results | |
| Start 222: external_ringtest::compare_results | |
| Start 269: testcorenrn_vecevent::compare_results | |
| 276/278 Test #211: reduced_dentate::compare_results ......................................... Passed 0.02 sec | |
| 277/278 Test #269: testcorenrn_vecevent::compare_results .................................... Passed 0.02 sec | |
| 278/278 Test #222: external_ringtest::compare_results ....................................... Passed 0.02 sec | |
| 100% tests passed, 0 tests failed out of 278 | |
| Total Test time (real) = 301.36 sec | |
| [32;1m$ cmake --build . --target install[0;m | |
| [0/2] Re-checking globbed directories... | |
| [1/5] Update hh.mod for CoreNEURON compatibility | |
| [2/5] Generating help_data.dat | |
| [3/5] cd /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h | |
| fatal: No names found, cannot describe anything. | |
| [4/5] Running utility command for hoc_module | |
| INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS | |
| INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk | |
| WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org | |
| WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0 | |
| INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'}) | |
| INFO:root:RX3D is DISABLED | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. | |
| !! | |
| ******************************************************************************** | |
| Requirements should be satisfied by a PEP 517 installer. | |
| If you are using pip, you can try `pip install --use-pep517`. | |
| ******************************************************************************** | |
| !! | |
| dist.fetch_build_eggs(dist.setup_requires) | |
| WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' | |
| /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn" is shallow and may cause errors | |
| warnings.warn(f'"{wd.path}" is shallow and may cause errors') | |
| INFO:root:running build | |
| INFO:root:running build_py | |
| INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
| INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:running build_ext | |
| INFO:root:==> Building Python extensions | |
| INFO:root:running build_scripts | |
| [4/5] Install the project... | |
| -- Install configuration: "Custom" | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib | |
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| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/libvisitor.a | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/hclass3.py | |
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| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/psection.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/neuroml | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/neuroml/metadata.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/neuroml/morphml.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/neuroml/xml2nrn.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/neuroml/__init__.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/neuroml/neuroml.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/neuroml/rdxml.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/neuroml/biophysics.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/config.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/units.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/sections.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdException.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/options.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/plugins.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdsection.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/species.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdmath.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/rate.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/region.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/multiCompartmentReaction.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/constants.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/dimension3.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/__init__.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/section1d.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/export.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/initializer.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/rangevar.py | |
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| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxd.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/generalizedReaction.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/nodelist.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/node.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/gui.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/rxd/reaction.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/tests | |
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| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/tests/__init__.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/tests/utils | |
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| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/strtobool.py | |
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| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/checkresult.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/tests/test_neuron.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/tests/test_vector.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/tests/test_rxd.py | |
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| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/gui2/config.py | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/gui2/__init__.py | |
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| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/python/neuron/crxd | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/gpu | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/gpu/nrn_acc_manager.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mechanism | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mechanism/membfunc.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mechanism/register_mech.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mechanism/mechanism.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech_mapping.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mechanism/eion.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/mod2c_core_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/cfile | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/cfile/cabvars.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mpi | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mpi/core | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mpi/core/nrnmpi.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpidec.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpi.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mpi/lib | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mpi/lib/nrnmpi.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpiuse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/config | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/config/config.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/config/version_macros.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/config/neuron_version.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/coreneuron.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/network | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/network/multisend.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/network/have2want.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/network/netpar.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/network/tnode.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/network/netcon.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/network/partrans.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/network/tqueue.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/network/netcvode.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/nrn2core_direct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/mech_report.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/core2nrn_data_return.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/prcellstate.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/nrn_setup.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/output_spikes.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/lfp.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/setup_fornetcon.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/nrn_checkpoint.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/user_params.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/nrnsection_mapping.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/nrn_filehandler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/mem_layout_util.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/phase1.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/reports | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_event.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/reports/sonata_report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/reports/nrnreport.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/io/phase2.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/vrecitem.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/utils_cuda.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/nrnmutdec.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/string_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_assert.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/nrnoc_aux.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar/progressbar.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/memory_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/profile | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/profile/profiler_interface.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/lpt.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/offload.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/memory.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/units.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/utils.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/randoms | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/randoms/nrnran123.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_stats.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/utils/ivocvect.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/nrnoc | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md2redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md1redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/membrane_definitions.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/sim | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/sim/multicore.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/sim/fast_imem.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/crout_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/errcodes.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_struct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/ssimplic_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/sparse_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/apps | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/apps/corenrn_parameters.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/permute | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/permute/node_permute.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/permute/cellorder.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include//coreneuron/permute/data_layout.hpp | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/share/coreneuron/mod_func.c.pl | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/share/coreneuron/enginemech.cpp | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/bin/nmodl | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/bin/nrniv-core | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/share/coreneuron/coreneuron.cpp | |
| -- Installing: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/lib/libcorenrnmech_internal.dylib | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/crout_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/neuron | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/neuron/cache | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/neuron/cache/mechanism_range.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/neuron/container | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/neuron/container/non_owning_soa_identifier.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/neuron/container/data_handle.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/neuron/container/generic_data_handle.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/neuron/model_data_fwd.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnrandom.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/hocassrt.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/multicore.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnconf.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/wrap_sprintf.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/simeq.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/ocmisc.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/multisplit.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/oc_ansi.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/hoclist.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/membfunc.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnmpidec.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnversionmacros.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/scoplib.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/sparse.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/membdef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/neuron.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/newton_struct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/newton | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/newton/newton.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrncvode | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrncvode/nrnneosm.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/bbsavestate.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nmodlmutex.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/euler_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/hocdec.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/md2redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/hocgetsym.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/euler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/cabvars.h | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseView.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseColEtree.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrixBase.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDiagonalProduct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTriangularView.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseAssign.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparsePermutation.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMap.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDenseProduct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseFuzzy.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/MappedSparseMatrix.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSolverBase.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseBlock.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/TriangularSolver.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseVector.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCompressedBase.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseProduct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRedux.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDot.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Jacobi | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Jacobi/Jacobi.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseQR | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SVD | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Cholesky | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/arch | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/StlSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/KLUSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnapi.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrncvode.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnsemanticversion.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/spmatrix.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/ocfunc.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/section_fwd.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/row_view.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/hoc_membf.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/backtrace_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnisaac.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/parse_with_deps.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/newton_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnredef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/cspredef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/dimplic.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/hoc.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/newton.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/crout.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnmpiuse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/md1redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrniv_mf.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrn_ansi.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/deflate.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/errcodes.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrniv | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/engine.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/gpu | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/core | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/lib | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/config | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/config/config.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/reports | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/profile | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/randoms | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrnoc | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/apps | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/permute | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnassrt.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/spconfig.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/runge.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnoc_ml.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/mech_api.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/mcran4.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/ssimplic_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/hocparse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/ssimplic.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123 | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/open64features.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/sse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/threefry.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/conventional | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_bmod.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_gemm_kernel.h | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_dfs.h | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseQR | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SVD | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Cholesky | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/arch | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/StlSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Eigen/KLUSupport | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnapi.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrncvode.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnsemanticversion.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/spmatrix.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/ocfunc.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/section_fwd.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/row_view.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/hoc_membf.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/backtrace_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnisaac.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/parse_with_deps.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/newton_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnredef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/cspredef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/dimplic.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/hoc.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/newton.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/crout.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnmpiuse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/md1redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrniv_mf.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrn_ansi.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/deflate.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/errcodes.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrniv | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/engine.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/gpu | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/core | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/lib | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/config | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/config/config.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/reports | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/profile | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/randoms | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrnoc | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/apps | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/permute | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnassrt.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/spconfig.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/runge.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/nrnoc_ml.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/mech_api.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/mcran4.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/ssimplic_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/hocparse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/ssimplic.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123 | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/open64features.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/sse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/threefry.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/conventional | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P178789/J1072345/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h | |
| -- U |
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