bbpbuildbot/GitLab logs for neuronsimulator-nrn#2954 Secret

## build-neuron-nmodl-intel-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1720021465:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1720021465:resolve_secrets
[0Ksection_start:1720021465:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3498140863, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 220127, build ref , job ID 1337618
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1337618_PROD_P2160_CP0_C1
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2285468
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1337618_PROD_P2160_CP0_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --ntasks=2 --jobid=2285468 --cpus-per-task=8 --mem=160G
section_end:1720021467:prepare_executor
[0Ksection_start:1720021467:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n21 via bbpv1.epfl.ch...
section_end:1720021470:prepare_script
[0Ksection_start:1720021470:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1720021470:get_sources
[0Ksection_start:1720021470:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=112404 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1720021476:restore_cache
[0Ksection_start:1720021476:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1337617)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=112508 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1337617 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1720021477:download_artifacts
[0Ksection_start:1720021477:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337618/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337618/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337618/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337618/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337618/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337618/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127/J1337618_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2285468/ccache
Config file:        /nvme/bbpcihpcproj12/2285468/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Wed Jul  3 17:44:42 2024
Local storage:
  Cache size (GB):  0.47 / 0.51 (91.11%)
  Files:            7336
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr

Concretized
--------------------------------
 -   57xmtie  neuron@git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   fz3oxtc      ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  ixoq64r      ^nmodl@git.7beaee9751e233f775a177c819d727abde7e4495=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul [45/49]
==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul
  Stage: 2.29s.  Cmake: 5.10s.  Build: 1.61s.  Install: 0.11s.  Post-install: 0.36s.  Total: 9.62s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_gcc-12.3.0-skylake/nmodl-git.7beaee9751e233f775a177c819d727abde7e4495_develop-ixoq64
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
==> Installing neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-57xmtiecraqmnzcw4p4wsy5c74juq7x3 [49/49]
==> No binary for neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-57xmtiecraqmnzcw4p4wsy5c74juq7x3 found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-57xmtiecraqmnzcw4p4wsy5c74juq7x3
  Stage: 12.54s.  Cmake: 1m 9.64s.  Build: 8m 6.92s.  Install: 20.25s.  Post-install: 0.60s.  Total: 9m 50.50s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_oneapi-2023.2.0-skylake/neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77_develop-57xmti
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be 57xmtiecraqmnzcw4p4wsy5c74juq7x3
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:            /nvme/bbpcihpcproj12/2285468/ccache
Config file:                /nvme/bbpcihpcproj12/2285468/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Wed Jul  3 17:57:53 2024
Cacheable calls:            1006 / 1152 (87.33%)
  Hits:                      976 / 1006 (97.02%)
    Direct:                  543 /  976 (55.64%)
    Preprocessed:            433 /  976 (44.36%)
  Misses:                     30 / 1006 ( 2.98%)
Uncacheable calls:           146 / 1152 (12.67%)
  Autoconf compile/link:       5 /  146 ( 3.42%)
  Called for linking:        115 /  146 (78.77%)
  Called for preprocessing:    1 /  146 ( 0.68%)
  Compilation failed:          2 /  146 ( 1.37%)
  No input file:              23 /  146 (15.75%)
Successful lookups:
  Direct:                    543 / 1008 (53.87%)
  Preprocessed:              433 /  465 (93.12%)
Local storage:
  Cache size (GB):          0.47 / 0.51 (92.44%)
  Files:                    7580
  Cleanups:                    1
  Hits:                      976 / 1008 (96.83%)
  Misses:                     32 / 1008 ( 3.17%)
  Reads:                    2016
  Writes:                    418
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1720022275:step_script
[0Ksection_start:1720022275:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:intel:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=132223 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1720022299:archive_cache
[0Ksection_start:1720022299:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=132397 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1337618 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=132438 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1337618 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=132479 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1337618 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1720022300:upload_artifacts_on_success
[0Ksection_start:1720022300:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1720022301:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-intel-shared.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1720021466:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1720021466:resolve_secrets
[0Ksection_start:1720021466:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3050049057, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 220127, build ref , job ID 1337619
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1337619_PROD_P2160_CP1_C2
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2285469
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1337619_PROD_P2160_CP1_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --ntasks=2 --jobid=2285469 --cpus-per-task=8 --mem=160G
section_end:1720021467:prepare_executor
[0Ksection_start:1720021467:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n20 via bbpv1.epfl.ch...
section_end:1720021471:prepare_script
[0Ksection_start:1720021471:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1720021472:get_sources
[0Ksection_start:1720021472:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:intel:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=164744 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1720021477:restore_cache
[0Ksection_start:1720021477:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1337617)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=164847 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1337617 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1720021478:download_artifacts
[0Ksection_start:1720021478:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337619/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337619/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337619/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337619/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337619/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337619/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127/J1337619_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2285469/ccache
Config file:        /nvme/bbpcihpcproj12/2285469/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Wed Jul  3 17:44:44 2024
Local storage:
  Cache size (GB):  0.46 / 0.51 (89.29%)
  Files:            7087
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr

Concretized
--------------------------------
 -   hjhino7  neuron@git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   fz3oxtc      ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  ixoq64r      ^nmodl@git.7beaee9751e233f775a177c819d727abde7e4495=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_gcc-12.3.0-skylake/nmodl-git.7beaee9751e233f775a177c819d727abde7e4495_develop-ixoq64
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt
==> Installing neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-hjhino76awtqjs26tfuynxjhwshnqcm7 [49/49]
==> No binary for neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-hjhino76awtqjs26tfuynxjhwshnqcm7 found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-hjhino76awtqjs26tfuynxjhwshnqcm7
  Stage: 13.15s.  Cmake: 1m 14.75s.  Build: 8m 15.93s.  Install: 19.10s.  Post-install: 0.60s.  Total: 10m 4.46s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_oneapi-2023.2.0-skylake/neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77_develop-hjhino
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be hjhino76awtqjs26tfuynxjhwshnqcm7
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:            /nvme/bbpcihpcproj12/2285469/ccache
Config file:                /nvme/bbpcihpcproj12/2285469/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Wed Jul  3 17:58:09 2024
Cacheable calls:             984 / 1110 (88.65%)
  Hits:                      954 /  984 (96.95%)
    Direct:                  522 /  954 (54.72%)
    Preprocessed:            432 /  954 (45.28%)
  Misses:                     30 /  984 ( 3.05%)
Uncacheable calls:           126 / 1110 (11.35%)
  Autoconf compile/link:       5 /  126 ( 3.97%)
  Called for linking:        106 /  126 (84.13%)
  Called for preprocessing:    1 /  126 ( 0.79%)
  Compilation failed:          2 /  126 ( 1.59%)
  No input file:              12 /  126 ( 9.52%)
Successful lookups:
  Direct:                    522 /  986 (52.94%)
  Preprocessed:              432 /  464 (93.10%)
Local storage:
  Cache size (GB):          0.46 / 0.51 (90.66%)
  Files:                    7332
  Hits:                      954 /  986 (96.75%)
  Misses:                     32 /  986 ( 3.25%)
  Reads:                    1972
  Writes:                    417
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1720022292:step_script
[0Ksection_start:1720022292:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:intel:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=185240 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Ashared-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1720022314:archive_cache
[0Ksection_start:1720022314:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=185526 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1337619 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=185567 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1337619 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=185611 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1337619 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1720022315:upload_artifacts_on_success
[0Ksection_start:1720022315:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1720022316:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-acc-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1720021467:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1720021467:resolve_secrets
[0Ksection_start:1720021467:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2698528233, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 220127, build ref , job ID 1337620
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1337620_PROD_P2160_CP2_C3
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2285470
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1337620_PROD_P2160_CP2_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --ntasks=2 --jobid=2285470 --cpus-per-task=8 --mem=160G
section_end:1720021468:prepare_executor
[0Ksection_start:1720021468:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i5n6 via bbpv1.epfl.ch...
section_end:1720021471:prepare_script
[0Ksection_start:1720021471:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1720021472:get_sources
[0Ksection_start:1720021472:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=176510 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1720021477:restore_cache
[0Ksection_start:1720021477:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1337617)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=176833 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1337617 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1720021478:download_artifacts
[0Ksection_start:1720021478:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337620/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337620/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337620/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337620/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337620/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337620/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127/J1337620_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2285470/ccache
Config file:        /nvme/bbpcihpcproj12/2285470/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Wed Jul  3 17:44:44 2024
Local storage:
  Cache size (GB):  0.45 / 0.51 (88.16%)
  Files:            8894
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr

Concretized
--------------------------------
 -   jithope  neuron@git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   az6cwid      ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  ixoq64r      ^nmodl@git.7beaee9751e233f775a177c819d727abde7e4495=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_gcc-12.3.0-skylake/nmodl-git.7beaee9751e233f775a177c819d727abde7e4495_develop-ixoq64
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
==> Installing neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-jithopedofuy6bybikuwny64esbbkjhd [50/50]
==> No binary for neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-jithopedofuy6bybikuwny64esbbkjhd found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-jithopedofuy6bybikuwny64esbbkjhd
  Stage: 21.91s.  Cmake: 1m 22.18s.  Build: 33m 43.72s.  Install: 20.24s.  Post-install: 0.65s.  Total: 35m 49.20s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_nvhpc-23.1-skylake/neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77_develop-jithop
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be jithopedofuy6bybikuwny64esbbkjhd
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:            /nvme/bbpcihpcproj12/2285470/ccache
Config file:                /nvme/bbpcihpcproj12/2285470/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Wed Jul  3 18:23:56 2024
Cacheable calls:             982 / 1087 (90.34%)
  Hits:                      952 /  982 (96.95%)
    Direct:                  525 /  952 (55.15%)
    Preprocessed:            427 /  952 (44.85%)
  Misses:                     30 /  982 ( 3.05%)
Uncacheable calls:           105 / 1087 ( 9.66%)
  Autoconf compile/link:       5 /  105 ( 4.76%)
  Called for linking:         87 /  105 (82.86%)
  Called for preprocessing:    2 /  105 ( 1.90%)
  Compilation failed:          2 /  105 ( 1.90%)
  No input file:               8 /  105 ( 7.62%)
  Preprocessing failed:        1 /  105 ( 0.95%)
Successful lookups:
  Direct:                    525 /  985 (53.30%)
  Preprocessed:              427 /  459 (93.03%)
Local storage:
  Cache size (GB):          0.46 / 0.51 (89.38%)
  Files:                    9135
  Hits:                      952 /  984 (96.75%)
  Misses:                     32 /  984 ( 3.25%)
  Reads:                    1969
  Writes:                    412
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1720023838:step_script
[0Ksection_start:1720023838:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=229378 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1720023859:archive_cache
[0Ksection_start:1720023859:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=229962 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1337620 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=230002 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1337620 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=230043 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1337620 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1720023861:upload_artifacts_on_success
[0Ksection_start:1720023861:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1720023862:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-acc-shared.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1720021467:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1720021467:resolve_secrets
[0Ksection_start:1720021467:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor484513044, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 220127, build ref , job ID 1337621
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1337621_PROD_P2160_CP3_C9
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2285471
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1337621_PROD_P2160_CP3_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --ntasks=2 --jobid=2285471 --cpus-per-task=8 --mem=160G
section_end:1720021469:prepare_executor
[0Ksection_start:1720021469:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i5n6 via bbpv1.epfl.ch...
section_end:1720021473:prepare_script
[0Ksection_start:1720021473:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1720021473:get_sources
[0Ksection_start:1720021473:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=176729 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1720021479:restore_cache
[0Ksection_start:1720021479:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1337617)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=177287 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1337617 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1720021479:download_artifacts
[0Ksection_start:1720021479:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337621/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337621/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337621/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337621/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337621/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337621/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127/J1337621_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2285471/ccache
Config file:        /nvme/bbpcihpcproj12/2285471/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Wed Jul  3 17:44:45 2024
Local storage:
  Cache size (GB):  0.45 / 0.51 (87.81%)
  Files:            8679
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr

Concretized
--------------------------------
 -   gjrsmky  neuron@git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   az6cwid      ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  ixoq64r      ^nmodl@git.7beaee9751e233f775a177c819d727abde7e4495=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g [36/50]
==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g
  Stage: 1.13s.  Cmake: 4.14s.  Build: 1.34s.  Install: 0.10s.  Post-install: 0.11s.  Total: 6.97s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_gcc-12.3.0-skylake/nmodl-git.7beaee9751e233f775a177c819d727abde7e4495_develop-ixoq64
==> Installing neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-gjrsmkyoozp7mvdr5bttjqgj5wqtbuq2 [50/50]
==> No binary for neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-gjrsmkyoozp7mvdr5bttjqgj5wqtbuq2 found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-gjrsmkyoozp7mvdr5bttjqgj5wqtbuq2
  Stage: 22.32s.  Cmake: 1m 26.63s.  Build: 32m 56.81s.  Install: 25.11s.  Post-install: 1.15s.  Total: 35m 13.02s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_nvhpc-23.1-skylake/neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77_develop-gjrsmk
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be gjrsmkyoozp7mvdr5bttjqgj5wqtbuq2
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:            /nvme/bbpcihpcproj12/2285471/ccache
Config file:                /nvme/bbpcihpcproj12/2285471/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Wed Jul  3 18:23:36 2024
Cacheable calls:            1002 / 1135 (88.28%)
  Hits:                      972 / 1002 (97.01%)
    Direct:                  540 /  972 (55.56%)
    Preprocessed:            432 /  972 (44.44%)
  Misses:                     30 / 1002 ( 2.99%)
Uncacheable calls:           133 / 1135 (11.72%)
  Autoconf compile/link:       5 /  133 ( 3.76%)
  Called for linking:        107 /  133 (80.45%)
  Called for preprocessing:    2 /  133 ( 1.50%)
  Compilation failed:          2 /  133 ( 1.50%)
  No input file:              16 /  133 (12.03%)
  Preprocessing failed:        1 /  133 ( 0.75%)
Successful lookups:
  Direct:                    540 / 1005 (53.73%)
  Preprocessed:              432 /  464 (93.10%)
Local storage:
  Cache size (GB):          0.46 / 0.51 (89.06%)
  Files:                    8925
  Hits:                      972 / 1004 (96.81%)
  Misses:                     32 / 1004 ( 3.19%)
  Reads:                    2009
  Writes:                    417
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1720023818:step_script
[0Ksection_start:1720023818:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=229195 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Ashared-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1720023840:archive_cache
[0Ksection_start:1720023840:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=229479 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1337621 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=229515 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1337621 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=229558 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1337621 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1720023842:upload_artifacts_on_success
[0Ksection_start:1720023842:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1720023842:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-omp-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1720021468:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1720021468:resolve_secrets
[0Ksection_start:1720021468:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1961548401, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 220127, build ref , job ID 1337622
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1337622_PROD_P2160_CP4_C10
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2285472
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1337622_PROD_P2160_CP4_C10 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --ntasks=2 --jobid=2285472 --cpus-per-task=8 --mem=160G
section_end:1720021469:prepare_executor
[0Ksection_start:1720021469:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i5n8 via bbpv1.epfl.ch...
section_end:1720021473:prepare_script
[0Ksection_start:1720021473:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1720021474:get_sources
[0Ksection_start:1720021474:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=168953 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1720021479:restore_cache
[0Ksection_start:1720021479:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1337617)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=169123 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1337617 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1720021480:download_artifacts
[0Ksection_start:1720021480:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337622/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337622/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337622/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337622/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337622/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337622/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127/J1337622_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2285472/ccache
Config file:        /nvme/bbpcihpcproj12/2285472/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Wed Jul  3 17:44:46 2024
Local storage:
  Cache size (GB):  0.45 / 0.51 (88.18%)
  Files:            9758
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr
 -       ^caliper+cuda cuda_arch=70

Concretized
--------------------------------
 -   hgnqdky  neuron@git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
 -   vjj3tpl      ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^]  hficqq7          ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  a46bi6u          ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^]  wtcpudz              ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^]  rytdxw5                  ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  7xnekxr          ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  vol6npp          ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   az6cwid      ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  ixoq64r      ^nmodl@git.7beaee9751e233f775a177c819d727abde7e4495=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
==> Installing caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 [53/55]
==> No binary for caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 found: installing from source
==> Fetching https://github.com/LLNL/Caliper/archive/v2.11.0.tar.gz
==> No patches needed for caliper
==> caliper: Executing phase: 'cmake'
==> caliper: Executing phase: 'build'
==> caliper: Executing phase: 'install'
==> caliper: Successfully installed caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2
  Stage: 2.97s.  Cmake: 9.22s.  Build: 8.01s.  Install: 1.12s.  Post-install: 0.18s.  Total: 21.82s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_gcc-12.3.0-skylake/nmodl-git.7beaee9751e233f775a177c819d727abde7e4495_develop-ixoq64
==> Installing neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-hgnqdkyuwflgni7zlvlfrwsqw3yyju25 [55/55]
==> No binary for neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-hgnqdkyuwflgni7zlvlfrwsqw3yyju25 found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-hgnqdkyuwflgni7zlvlfrwsqw3yyju25
  Stage: 23.49s.  Cmake: 2m 7.26s.  Build: 32m 26.86s.  Install: 29.18s.  Post-install: 0.70s.  Total: 35m 28.03s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_nvhpc-23.1-skylake/neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77_develop-hgnqdk
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be hgnqdkyuwflgni7zlvlfrwsqw3yyju25
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:            /nvme/bbpcihpcproj12/2285472/ccache
Config file:                /nvme/bbpcihpcproj12/2285472/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Wed Jul  3 18:24:13 2024
Cacheable calls:            1145 / 1283 (89.24%)
  Hits:                     1110 / 1145 (96.94%)
    Direct:                  678 / 1110 (61.08%)
    Preprocessed:            432 / 1110 (38.92%)
  Misses:                     35 / 1145 ( 3.06%)
Uncacheable calls:           138 / 1283 (10.76%)
  Autoconf compile/link:       5 /  138 ( 3.62%)
  Called for linking:        104 /  138 (75.36%)
  Called for preprocessing:    4 /  138 ( 2.90%)
  Compilation failed:          2 /  138 ( 1.45%)
  No input file:              22 /  138 (15.94%)
  Preprocessing failed:        1 /  138 ( 0.72%)
Successful lookups:
  Direct:                    678 / 1144 (59.27%)
  Preprocessed:              432 /  465 (92.90%)
Local storage:
  Cache size (GB):          0.45 / 0.51 (88.15%)
  Files:                    9824
  Cleanups:                    1
  Hits:                     1110 / 1143 (97.11%)
  Misses:                     33 / 1143 ( 2.89%)
  Reads:                    2286
  Writes:                    418
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1720023856:step_script
[0Ksection_start:1720023856:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=220710 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1720023877:archive_cache
[0Ksection_start:1720023877:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=221230 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1337622 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=221316 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1337622 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=221358 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1337622 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1720023879:upload_artifacts_on_success
[0Ksection_start:1720023879:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1720023880:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-omp.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1720021468:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1720021468:resolve_secrets
[0Ksection_start:1720021468:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2158248228, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 220127, build ref , job ID 1337623
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1337623_PROD_P2160_CP5_C11
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2285473
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1337623_PROD_P2160_CP5_C11 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --ntasks=2 --jobid=2285473 --cpus-per-task=8 --mem=160G
section_end:1720021470:prepare_executor
[0Ksection_start:1720021470:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i5n8 via bbpv1.epfl.ch...
section_end:1720021473:prepare_script
[0Ksection_start:1720021473:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1720021474:get_sources
[0Ksection_start:1720021474:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=168920 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1720021479:restore_cache
[0Ksection_start:1720021479:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1337617)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=169160 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1337617 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1720021480:download_artifacts
[0Ksection_start:1720021480:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337623/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337623/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337623/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337623/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337623/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337623/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127/J1337623_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2285473/ccache
Config file:        /nvme/bbpcihpcproj12/2285473/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Wed Jul  3 17:44:46 2024
Local storage:
  Cache size (GB):  0.45 / 0.51 (88.61%)
  Files:            9529
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr
 -       ^caliper+cuda cuda_arch=70

Concretized
--------------------------------
 -   fahwnlu  neuron@git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
 -   vjj3tpl      ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^]  hficqq7          ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  a46bi6u          ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^]  wtcpudz              ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^]  rytdxw5                  ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  7xnekxr          ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  vol6npp          ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   az6cwid      ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  ixoq64r      ^nmodl@git.7beaee9751e233f775a177c819d727abde7e4495=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_gcc-12.3.0-skylake/nmodl-git.7beaee9751e233f775a177c819d727abde7e4495_develop-ixoq64
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
==> Installing neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-fahwnluw7xgffwgkv7dz2jaxirtbalrp [55/55]
==> No binary for neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-fahwnluw7xgffwgkv7dz2jaxirtbalrp found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77=develop-fahwnluw7xgffwgkv7dz2jaxirtbalrp
  Stage: 13.08s.  Cmake: 1m 23.74s.  Build: 32m 57.54s.  Install: 43.74s.  Post-install: 4.50s.  Total: 35m 25.92s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_nvhpc-23.1-skylake/neuron-git.76b32dac52e6eae7ca57a29daed8e38b858b0b77_develop-fahwnl
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be fahwnluw7xgffwgkv7dz2jaxirtbalrp
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:            /nvme/bbpcihpcproj12/2285473/ccache
Config file:                /nvme/bbpcihpcproj12/2285473/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Wed Jul  3 18:24:12 2024
Cacheable calls:             988 / 1095 (90.23%)
  Hits:                      954 /  988 (96.56%)
    Direct:                  522 /  954 (54.72%)
    Preprocessed:            432 /  954 (45.28%)
  Misses:                     34 /  988 ( 3.44%)
Uncacheable calls:           107 / 1095 ( 9.77%)
  Autoconf compile/link:       5 /  107 ( 4.67%)
  Called for linking:         89 /  107 (83.18%)
  Called for preprocessing:    2 /  107 ( 1.87%)
  Compilation failed:          2 /  107 ( 1.87%)
  No input file:               8 /  107 ( 7.48%)
  Preprocessing failed:        1 /  107 ( 0.93%)
Successful lookups:
  Direct:                    522 /  987 (52.89%)
  Preprocessed:              432 /  464 (93.10%)
Local storage:
  Cache size (GB):          0.46 / 0.51 (89.86%)
  Files:                    9778
  Hits:                      954 /  986 (96.75%)
  Misses:                     32 /  986 ( 3.25%)
  Reads:                    1973
  Writes:                    417
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1720023854:step_script
[0Ksection_start:1720023854:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=220606 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1720023875:archive_cache
[0Ksection_start:1720023875:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=220849 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1337623 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=220890 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1337623 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=220932 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1337623 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1720023877:upload_artifacts_on_success
[0Ksection_start:1720023877:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1720023877:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-nmodl.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1720021097:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1720021097:resolve_secrets
[0Ksection_start:1720021097:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3392695528, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 220127, build ref , job ID 1337617
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1337617_PROD_P2160_CP0_C1
Job parameters: memory=160G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2285459
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1337617_PROD_P2160_CP0_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127 --ntasks=2 --jobid=2285459 --cpus-per-task=8 --mem=160G
section_end:1720021098:prepare_executor
[0Ksection_start:1720021098:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n21 via bbpv1.epfl.ch...
section_end:1720021101:prepare_script
[0Ksection_start:1720021101:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1720021102:get_sources
[0Ksection_start:1720021102:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:nmodl-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=108742 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1720021107:restore_cache
[0Ksection_start:1720021107:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for spack_setup (1337615)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=108845 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1337615 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1720021108:download_artifacts
[0Ksection_start:1720021108:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337617/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337617/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337617/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337617/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337617/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337617/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/J1337615/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220127/J1337617_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install nmodl%gcc ~legacy-unit
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2285459/ccache
Config file:        /nvme/bbpcihpcproj12/2285459/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Wed Jul  3 17:38:33 2024
Local storage:
  Cache size (GB):  0.44 / 0.51 (86.46%)
  Files:            5442
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   nmodl%gcc~legacy-unit

Concretized
--------------------------------
 -   ixoq64r  nmodl@git.7beaee9751e233f775a177c819d727abde7e4495=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  pywly2v      ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  swjylul          ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[^]  ud3echq      ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  evtttrh      ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[^]  teske2k      ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca      ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv          ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  p3xbqxj          ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  7validy      ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw          ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo      ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt      ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz          ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv              ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk                  ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  uqml2to                  ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu                      ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  xwl5l6q                  ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek                  ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  ihotvbs      ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
==> Installing nmodl-git.7beaee9751e233f775a177c819d727abde7e4495=develop-ixoq64rwe3feip5rdbbtw2mc7jszelrr [19/19]
==> No binary for nmodl-git.7beaee9751e233f775a177c819d727abde7e4495=develop-ixoq64rwe3feip5rdbbtw2mc7jszelrr found: installing from source
==> No patches needed for nmodl
==> nmodl: Executing phase: 'cmake'
==> nmodl: Executing phase: 'build'
==> nmodl: Executing phase: 'install'
==> nmodl: Successfully installed nmodl-git.7beaee9751e233f775a177c819d727abde7e4495=develop-ixoq64rwe3feip5rdbbtw2mc7jszelrr
  Stage: 1m 17.48s.  Cmake: 2.57s.  Build: 1m 33.48s.  Install: 1.42s.  Post-install: 0.35s.  Total: 2m 55.56s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220127/software/install_gcc-12.3.0-skylake/nmodl-git.7beaee9751e233f775a177c819d727abde7e4495_develop-ixoq64
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be ixoq64rwe3feip5rdbbtw2mc7jszelrr
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:      /nvme/bbpcihpcproj12/2285459/ccache
Config file:          /nvme/bbpcihpcproj12/2285459/ccache/ccache.conf
System config file:   /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:        Wed Jul  3 17:43:54 2024
Cacheable calls:       138 /  165 (83.64%)
  Hits:                136 /  138 (98.55%)
    Direct:             28 /  136 (20.59%)
    Preprocessed:      108 /  136 (79.41%)
  Misses:                2 /  138 ( 1.45%)
Uncacheable calls:      27 /  165 (16.36%)
  Called for linking:   24 /   27 (88.89%)
  No input file:         3 /   27 (11.11%)
Successful lookups:
  Direct:               28 /  138 (20.29%)
  Preprocessed:        108 /  110 (98.18%)
Local storage:
  Cache size (GB):    0.44 / 0.51 (86.47%)
  Files:              5446
  Hits:                136 /  138 (98.55%)
  Misses:                2 /  138 ( 1.45%)
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[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1720021436:step_script
[0Ksection_start:1720021436:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:nmodl-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=111432 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1720021458:archive_cache
[0Ksection_start:1720021458:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=111604 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1337617 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=111644 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1337617 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=111684 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1337617 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1720021460:upload_artifacts_on_success
[0Ksection_start:1720021460:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1720021461:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## GitLab logs for neuronsimulator-nrn#2954
!

## mac-m1-cmake-build-cmake-on-off-off-address.txt
[0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m
[0K  on macos-arm64 vGzz-bdp[0;m
section_start:1720020985:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1720020985:resolve_secrets
[0Ksection_start:1720020985:prepare_executor
[0K[0K[36;1mPreparing the "shell" executor[0;m[0;m
[0KUsing Shell executor...[0;m
section_end:1720020985:prepare_executor
[0Ksection_start:1720020985:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1720020985:prepare_script
[0Ksection_start:1720020985:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mFetching changes with git depth set to 20...[0;m
Initialized empty Git repository in /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/.git/
[32;1mCreated fresh repository.[0;m
[32;1mChecking out 76b32dac as enh/leite/py-segment-nanobind...[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1720020987:get_sources
[0Ksection_start:1720020987:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-enh/leite/py-segment-nanobind-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=arm64 os[0;m=darwin pid[0;m=70795 revision[0;m=43b2dc3d version[0;m=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1720020988:restore_cache
[0Ksection_start:1720020988:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ real_python=$(python3 resolve_shim.py)[0;m
[32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
[32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m
[32;1m$ venv/bin/python3 -m ensurepip --upgrade --default-pip[0;m
Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpmc66h7j_
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpmc66h7j_/setuptools-68.2.2-py3-none-any.whl
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpmc66h7j_/pip-23.3.1-py3-none-any.whl
Installing collected packages: setuptools, pip
Successfully installed pip-23.3.1 setuptools-68.2.2
[32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl'
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nmodl'...
From https://github.com/BlueBrain/nmodl
 * branch            c5ecfea39cbd53ffcc248b1dcf732c1e0ae1ffc4 -> FETCH_HEAD
Submodule path 'external/nmodl': checked out 'c5ecfea39cbd53ffcc248b1dcf732c1e0ae1ffc4'
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions'
Submodule 'ext/backward' (https://github.com/bombela/backward-cpp.git) registered for path 'external/nmodl/ext/backward'
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2'
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11'
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen'
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt'
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json'
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11'
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog'
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'...
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nmodl/ext/backward'...
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nmodl/ext/catch2'...
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nmodl/ext/cli11'...
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nmodl/ext/eigen'...
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nmodl/ext/fmt'...
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nmodl/ext/json'...
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nmodl/ext/pybind11'...
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nmodl/ext/spdlog'...
From https://github.com/BlueBrain/hpc-coding-conventions
 * branch            f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d'
Submodule path 'external/nmodl/ext/backward': checked out '51f0700452cf71c57d43c2d028277b24cde32502'
From https://github.com/catchorg/Catch2
 * branch            8ac8190e494a381072c89f5e161b92a08d98b37b -> FETCH_HEAD
Submodule path 'external/nmodl/ext/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
From https://github.com/CLIUtils/CLI11
 * branch            f4d0731cebb123ff0ace712c099dffbcd2c58e5a -> FETCH_HEAD
Submodule path 'external/nmodl/ext/cli11': checked out 'f4d0731cebb123ff0ace712c099dffbcd2c58e5a'
From https://gitlab.com/libeigen/eigen
 * branch            3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
From https://github.com/fmtlib/fmt
 * branch            e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281'
From https://github.com/nlohmann/json
 * branch            9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/json': checked out '9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03'
From https://github.com/pybind/pybind11
 * branch            3e9dfa2866941655c56877882565e7577de6fc7b -> FETCH_HEAD
Submodule path 'external/nmodl/ext/pybind11': checked out '3e9dfa2866941655c56877882565e7577de6fc7b'
From https://github.com/gabime/spdlog
 * branch            7c02e204c92545f869e2f04edaab1f19fe8b19fd -> FETCH_HEAD
Submodule path 'external/nmodl/ext/spdlog': checked out '7c02e204c92545f869e2f04edaab1f19fe8b19fd'
[32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m
Ignoring importlib-metadata: markers 'python_version < "3.9"' don't match your environment
Ignoring importlib-resources: markers 'python_version < "3.9"' don't match your environment
Collecting scikit-build-core (from -r external/nmodl/requirements.txt (line 2))
  Using cached scikit_build_core-0.9.8-py3-none-any.whl.metadata (19 kB)
Collecting setuptools-scm>=8.0 (from -r external/nmodl/requirements.txt (line 3))
  Using cached setuptools_scm-8.1.0-py3-none-any.whl.metadata (6.6 kB)
Collecting Jinja2>=2.9.3 (from -r external/nmodl/requirements.txt (line 4))
  Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
Collecting PyYAML>=3.13 (from -r external/nmodl/requirements.txt (line 5))
  Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB)
Collecting find_libpython (from -r external/nmodl/requirements.txt (line 7))
  Using cached find_libpython-0.4.0-py3-none-any.whl.metadata (2.8 kB)
Collecting sympy>=1.3 (from -r external/nmodl/requirements.txt (line 8))
  Using cached sympy-1.12.1-py3-none-any.whl.metadata (12 kB)
Collecting pytest<=8.1.1 (from -r external/nmodl/requirements.txt (line 12))
  Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB)
Collecting pytest-cov (from -r external/nmodl/requirements.txt (line 13))
  Using cached pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB)
Collecting numpy (from -r external/nmodl/requirements.txt (line 14))
  Using cached numpy-2.0.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (114 kB)
Collecting jupyter-client (from -r external/nmodl/requirements.txt (line 16))
  Using cached jupyter_client-8.6.2-py3-none-any.whl.metadata (8.3 kB)
Collecting jupyter (from -r external/nmodl/requirements.txt (line 17))
  Using cached jupyter-1.0.0-py2.py3-none-any.whl.metadata (995 bytes)
Collecting myst_parser<2.0.0 (from -r external/nmodl/requirements.txt (line 18))
  Using cached myst_parser-1.0.0-py3-none-any.whl.metadata (5.5 kB)
Collecting mistune<3 (from -r external/nmodl/requirements.txt (line 19))
  Using cached mistune-2.0.5-py2.py3-none-any.whl.metadata (1.5 kB)
Collecting nbconvert (from -r external/nmodl/requirements.txt (line 20))
  Using cached nbconvert-7.16.4-py3-none-any.whl.metadata (8.5 kB)
Collecting nbsphinx>=0.3.2 (from -r external/nmodl/requirements.txt (line 21))
  Using cached nbsphinx-0.9.4-py3-none-any.whl.metadata (2.1 kB)
Collecting sphinxcontrib-applehelp<1.0.3 (from -r external/nmodl/requirements.txt (line 22))
  Using cached sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl.metadata (1.4 kB)
Collecting sphinxcontrib-htmlhelp<=2.0.0 (from -r external/nmodl/requirements.txt (line 23))
  Using cached sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl.metadata (1.6 kB)
Collecting sphinx<6 (from -r external/nmodl/requirements.txt (line 24))
  Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB)
Collecting sphinx-rtd-theme (from -r external/nmodl/requirements.txt (line 25))
  Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl.metadata (4.4 kB)
Collecting docutils<0.20 (from -r external/nmodl/requirements.txt (line 26))
  Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB)
Collecting exceptiongroup>=1.0 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2))
  Using cached exceptiongroup-1.2.1-py3-none-any.whl.metadata (6.6 kB)
Collecting packaging>=21.3 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2))
  Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
Collecting pathspec>=0.10.1 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2))
  Using cached pathspec-0.12.1-py3-none-any.whl.metadata (21 kB)
Collecting tomli>=1.2.2 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2))
  Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB)
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from setuptools-scm>=8.0->-r external/nmodl/requirements.txt (line 3)) (68.2.2)
Collecting MarkupSafe>=2.0 (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 4))
  Using cached MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB)
Collecting mpmath<1.4.0,>=1.1.0 (from sympy>=1.3->-r external/nmodl/requirements.txt (line 8))
  Using cached mpmath-1.3.0-py3-none-any.whl.metadata (8.6 kB)
Collecting iniconfig (from pytest<=8.1.1->-r external/nmodl/requirements.txt (line 12))
  Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
Collecting pluggy<2.0,>=1.4 (from pytest<=8.1.1->-r external/nmodl/requirements.txt (line 12))
  Using cached pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB)
Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov->-r external/nmodl/requirements.txt (line 13))
  Using cached coverage-7.5.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (8.2 kB)
Collecting jupyter-core!=5.0.*,>=4.12 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
  Using cached jupyter_core-5.7.2-py3-none-any.whl.metadata (3.4 kB)
Collecting python-dateutil>=2.8.2 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
  Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting pyzmq>=23.0 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
  Using cached pyzmq-26.0.3-cp310-cp310-macosx_10_15_universal2.whl.metadata (6.1 kB)
Collecting tornado>=6.2 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
  Using cached tornado-6.4.1-cp38-abi3-macosx_10_9_universal2.whl.metadata (2.5 kB)
Collecting traitlets>=5.3 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
  Using cached traitlets-5.14.3-py3-none-any.whl.metadata (10 kB)
Collecting notebook (from jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting qtconsole (from jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting jupyter-console (from jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting ipykernel (from jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting markdown-it-py<3.0.0,>=1.0.0 (from myst_parser<2.0.0->-r external/nmodl/requirements.txt (line 18))
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Collecting mdit-py-plugins~=0.3.4 (from myst_parser<2.0.0->-r external/nmodl/requirements.txt (line 18))
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Collecting beautifulsoup4 (from nbconvert->-r external/nmodl/requirements.txt (line 20))
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Collecting bleach!=5.0.0 (from nbconvert->-r external/nmodl/requirements.txt (line 20))
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Collecting jupyterlab-pygments (from nbconvert->-r external/nmodl/requirements.txt (line 20))
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Collecting nbclient>=0.5.0 (from nbconvert->-r external/nmodl/requirements.txt (line 20))
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Installing collected packages: webencodings, wcwidth, snowballstemmer, pure-eval, ptyprocess, mpmath, mistune, find_libpython, fastjsonschema, widgetsnbextension, websocket-client, webcolors, urllib3, uri-template, typing-extensions, types-python-dateutil, traitlets, tornado, tomli, tinycss2, sympy, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, sniffio, six, send2trash, rpds-py, rfc3986-validator, pyzmq, PyYAML, python-json-logger, pygments, pycparser, psutil, prompt-toolkit, prometheus-client, pluggy, platformdirs, pexpect, pathspec, parso, pandocfilters, packaging, overrides, numpy, nest-asyncio, mdurl, MarkupSafe, jupyterlab-widgets, jupyterlab-pygments, jsonpointer, json5, iniconfig, imagesize, idna, h11, fqdn, executing, exceptiongroup, docutils, defusedxml, decorator, debugpy, coverage, charset-normalizer, certifi, babel, attrs, appnope, alabaster, terminado, setuptools-scm, scikit-build-core, rfc3339-validator, requests, referencing, qtpy, python-dateutil, pytest, matplotlib-inline, markdown-it-py, jupyter-core, Jinja2, jedi, httpcore, comm, cffi, bleach, beautifulsoup4, async-lru, asttokens, anyio, stack-data, sphinx, pytest-cov, mdit-py-plugins, jupyter-server-terminals, jupyter-client, jsonschema-specifications, httpx, arrow, argon2-cffi-bindings, sphinxcontrib-jquery, myst_parser, jsonschema, isoduration, ipython, argon2-cffi, sphinx-rtd-theme, nbformat, ipywidgets, ipykernel, qtconsole, nbclient, jupyter-events, jupyter-console, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, notebook, jupyter
Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 PyYAML-6.0.1 alabaster-0.7.16 anyio-4.4.0 appnope-0.1.4 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 asttokens-2.4.1 async-lru-2.0.4 attrs-23.2.0 babel-2.15.0 beautifulsoup4-4.12.3 bleach-6.1.0 certifi-2024.6.2 cffi-1.16.0 charset-normalizer-3.3.2 comm-0.2.2 coverage-7.5.4 debugpy-1.8.2 decorator-5.1.1 defusedxml-0.7.1 docutils-0.19 exceptiongroup-1.2.1 executing-2.0.1 fastjsonschema-2.20.0 find_libpython-0.4.0 fqdn-1.5.1 h11-0.14.0 httpcore-1.0.5 httpx-0.27.0 idna-3.7 imagesize-1.4.1 iniconfig-2.0.0 ipykernel-6.29.5 ipython-8.26.0 ipywidgets-8.1.3 isoduration-20.11.0 jedi-0.19.1 json5-0.9.25 jsonpointer-3.0.0 jsonschema-4.22.0 jsonschema-specifications-2023.12.1 jupyter-1.0.0 jupyter-client-8.6.2 jupyter-console-6.6.3 jupyter-core-5.7.2 jupyter-events-0.10.0 jupyter-lsp-2.2.5 jupyter-server-2.14.1 jupyter-server-terminals-0.5.3 jupyterlab-4.2.3 jupyterlab-pygments-0.3.0 jupyterlab-server-2.27.2 jupyterlab-widgets-3.0.11 markdown-it-py-2.2.0 matplotlib-inline-0.1.7 mdit-py-plugins-0.3.5 mdurl-0.1.2 mistune-2.0.5 mpmath-1.3.0 myst_parser-1.0.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.9.4 nest-asyncio-1.6.0 notebook-7.2.1 notebook-shim-0.2.4 numpy-2.0.0 overrides-7.7.0 packaging-24.1 pandocfilters-1.5.1 parso-0.8.4 pathspec-0.12.1 pexpect-4.9.0 platformdirs-4.2.2 pluggy-1.5.0 prometheus-client-0.20.0 prompt-toolkit-3.0.47 psutil-6.0.0 ptyprocess-0.7.0 pure-eval-0.2.2 pycparser-2.22 pygments-2.18.0 pytest-8.1.1 pytest-cov-5.0.0 python-dateutil-2.9.0.post0 python-json-logger-2.0.7 pyzmq-26.0.3 qtconsole-5.5.2 qtpy-2.4.1 referencing-0.35.1 requests-2.32.3 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.18.1 scikit-build-core-0.9.8 send2trash-1.8.3 setuptools-scm-8.1.0 six-1.16.0 sniffio-1.3.1 snowballstemmer-2.2.0 soupsieve-2.5 sphinx-5.3.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 stack-data-0.6.3 sympy-1.12.1 terminado-0.18.1 tinycss2-1.3.0 tomli-2.0.1 tornado-6.4.1 traitlets-5.14.3 types-python-dateutil-2.9.0.20240316 typing-extensions-4.12.2 uri-template-1.3.0 urllib3-2.2.2 wcwidth-0.2.13 webcolors-24.6.0 webencodings-0.5.1 websocket-client-1.8.0 widgetsnbextension-4.0.11

[notice] A new release of pip is available: 23.3.1 -> 24.1.1
[notice] To update, run: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/bin/python3 -m pip install --upgrade pip
[32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m
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Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl (2.2 MB)
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB)
Using cached pillow-10.4.0-cp310-cp310-macosx_11_0_arm64.whl (3.4 MB)
Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB)
Using cached distro-1.9.0-py3-none-any.whl (20 kB)
Installing collected packages: wheel, setuptools, pyparsing, pip, pillow, numpy, mpi4py, kiwisolver, fonttools, distro, cython, cycler, scikit-build, contourpy, bokeh, matplotlib
  Attempting uninstall: setuptools
    Found existing installation: setuptools 68.2.2
    Uninstalling setuptools-68.2.2:
      Successfully uninstalled setuptools-68.2.2
  Attempting uninstall: pip
    Found existing installation: pip 23.3.1
    Uninstalling pip-23.3.1:
      Successfully uninstalled pip-23.3.1
  Attempting uninstall: numpy
    Found existing installation: numpy 2.0.0
    Uninstalling numpy-2.0.0:
      Successfully uninstalled numpy-2.0.0
Successfully installed bokeh-2.4.3 contourpy-1.2.1 cycler-0.12.1 cython-0.29.37 distro-1.9.0 fonttools-4.53.0 kiwisolver-1.4.5 matplotlib-3.9.0 mpi4py-3.1.6 numpy-1.26.4 pillow-10.4.0 pip-24.1.1 pyparsing-3.1.2 scikit-build-0.18.0 setuptools-70.2.0 wheel-0.43.0
[32;1m$ source ./venv/bin/activate[0;m
[32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m
[32;1m$ ${PYTHON} --version[0;m
Python 3.10.13
[32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m
[32;1m$ export CXX=${CXX:-g++}[0;m
[32;1m$ export CC=${CC:-gcc}[0;m
[32;1m$ brew install flex bison[0;m
Warning: flex 2.6.4_2 is already installed and up-to-date.
To reinstall 2.6.4_2, run:
  brew reinstall flex
Warning: bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
  brew reinstall bison
[32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m
[32;1m$ export INSTALL_DIR=$(pwd)/install[0;m
[32;1m$ echo $LANG[0;m

[32;1m$ echo $LC_ALL[0;m

[32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m
[32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m
[32;1m$ cmake_args=(-G Ninja)[0;m
[32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m
[32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m
[32;1m$ fi[0;m
[32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m
[32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m
[32;1m$ mkdir build && cd build[0;m
[32;1m$ echo "Building with ${cmake_args[@]}"[0;m
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/bin/python
[32;1m$ cmake .. "${cmake_args[@]}"[0;m
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- Sub-module : missing external/coding-conventions : running git submodule update  --init
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions'
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/coding-conventions'...
Submodule path 'external/coding-conventions': checked out '3d157f9c8ea94d196a825aaa7f523265e360dc4b'
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123'
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/Random123'...
From https://github.com/BlueBrain/Random123
 * branch            b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1'
-- 3rd party project: using Random123 from "external/Random123"
-- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen
Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen'
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/eigen'...
From https://gitlab.com/libeigen/eigen
 * branch            3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
-- 3rd party project: using eigen from "external/eigen"
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2")
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6")
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1")
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Sub-module : missing /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nanobind : running git submodule update --recursive;--depth;1 --init
Submodule 'external/nanobind' (https://github.com/wjakob/nanobind) registered for path 'external/nanobind'
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nanobind'...
From https://github.com/wjakob/nanobind
 * branch            8d7f1ee0621c17fa370b704b2100ffa0243d5bfb -> FETCH_HEAD
Submodule path 'external/nanobind': checked out '8d7f1ee0621c17fa370b704b2100ffa0243d5bfb'
Submodule 'ext/robin_map' (https://github.com/Tessil/robin-map) registered for path 'external/nanobind/ext/robin_map'
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nanobind/ext/robin_map'...
From https://github.com/Tessil/robin-map
 * branch            188c45569cc2a5dd768077c193830b51d33a5020 -> FETCH_HEAD
Submodule path 'external/nanobind/ext/robin_map': checked out '188c45569cc2a5dd768077c193830b51d33a5020'
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11'
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/CLI11'...
From https://github.com/CLIUtils/CLI11
 * branch            291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2'
-- 3rd party project: using CLI11 from "external/CLI11"
CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Building CoreNEURON
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)")
-- Found Perl: /usr/bin/perl (found version "5.30.3")
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH)
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nmodl
-- CHECKING FOR FLEX/BISON
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0")
--  Adding Flex include path as : /opt/homebrew/opt/flex/include/
-- NMODL_TEST_FORMATTING: OFF
-- NMODL_GIT_HOOKS: OFF
-- NMODL_GIT_COMMIT_HOOKS:
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg
-- NMODL_STATIC_ANALYSIS: OFF
-- NMODL_TEST_STATIC_ANALYSIS: OFF
-- 3rd party project: using eigen from "ext/eigen"
-- 3rd party project: using fmt from "ext/fmt"
-- Version: 10.2.1
-- Build type: Custom
-- 3rd party project: using json from "ext/json"
-- Using the multi-header code from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/nmodl/ext/json/include/
-- 3rd party project: using pybind11 from "ext/pybind11"
-- pybind11 v2.12.0
-- Found PythonInterp: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.6")
-- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- 3rd party project: using spdlog from "ext/spdlog"
-- Build spdlog: 1.13.0
-- Build type: Custom
-- CHECKING FOR PYTHON
-- Found Python: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/bin/python3.10 (found suitable version "3.10.13", minimum required is "3.8") found components: Interpreter
CMake Warning (dev) at external/nmodl/src/pybind/CMakeLists.txt:27 (configure_file):
  configure_file called with unknown argument(s):

   @ONLY@

This warning is for project developers.  Use -Wno-dev to suppress it.

--
-- Configured NMODL 0.0 (c5ecfea 2024-06-10 16:25:23 +0200)
--
-- You can now build NMODL using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------------+--------------------------------------------------------
--  Target             |   Description
-- --------------------+--------------------------------------------------------
-- test                | Run unit tests
-- install             | Will install NMODL to: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/install
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -openmp-simd
-- Build Type          | Custom
-- Python Bindings     | OFF
-- Flex                | /opt/homebrew/opt/flex/bin/flex
-- Bison               | /opt/homebrew/opt/bison/bin/bison
-- Python              | /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/bin/python
--   Linked against    | ON
-- --------------------+--------------------------------------------------------
--  See documentation : https://github.com/BlueBrain/nmodl/
-- --------------------+--------------------------------------------------------
--
--
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type          | SHARED
-- MPI                 | ON
--   DYNAMIC           | OFF
--   INC               | /opt/homebrew/Cellar/open-mpi/5.0.1/include
-- OpenMP              | ON
-- NMODL PATH          | /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/bin/nmodl
-- NMODL FLAGS         |
-- GPU Support         | OFF
-- Auto Timeout        | ON
-- Wrap exp()          | OFF
-- SplayTree Queue     | ON
-- NetReceive Buffer   | ON
-- Caliper             | OFF
-- Likwid              | OFF
-- Unit Tests          | ON
-- Reporting           | OFF
-- --------------------+--------------------------------------------------------
--
Extracting link flags from target 'nrngnu', beware that this can be fragile. Got:
Extracting link flags from target 'sparse13', beware that this can be fragile. Got:
For 'nrnpython' going to see TARGET 'nanobind' recursively.
Extracting link flags from target 'nanobind', beware that this can be fragile. Got:  /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;nanobind
Extracting link flags from target 'nrnpython', beware that this can be fragile. Got:  /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;nanobind
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got:  /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;nanobind
Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
-- Sub-module : missing /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/catch2 : running git submodule update  --init
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2'
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/external/catch2'...
Submodule path 'external/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
-- Found Python module 'pytest' with version(s): 8.1.1
-- Found Python module 'pytest_cov' with version(s): 5.0.0
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata'
Cloning into '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/test/rxd/testdata'...
From https://github.com/neuronsimulator/rxdtestdata
 * branch            30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD
Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58'
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0")
--
-- Configured NEURON 9.0.0
--
-- You can now build NEURON using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
--  Target       |   Description
-- --------------+--------------------------------------------------------------
-- install       | Will install NEURON to: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/install
--               | Change the install location of NEURON using:
--               |   cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs          | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall     | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
--  Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER    | /usr/bin/gcc
-- CXX COMPILER  | /usr/bin/g++
-- BUILD_TYPE    | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug)
-- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd
-- Shared        | ON
-- MPI           | ON
--   DYNAMIC     | OFF
--   INC         | /opt/homebrew/Cellar/open-mpi/5.0.1/include
--   LIB         | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Python        | ON
--   DYNAMIC     | OFF
--   MODULE      | ON
--  python3.10 (default)
--   EXE         | /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/bin/python
--   INC         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10
--   LIB         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline      | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses        | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D          | OFF
-- Interviews    | OFF
-- CoreNEURON    | ON
--   PATH        | /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/coreneuron
--   LINK FLAGS  |  -lcorenrnmech  -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Tests         | ON
-- --------------+--------------------------------------------------------------
--  See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
--
-- Configuring done (33.1s)
-- Generating done (0.2s)
-- Build files have been written to: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build
[32;1m$ ccache -z[0;m
Statistics zeroed
[32;1m$ ccache -vs 2>/dev/null[0;m
Cache directory:    /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated:      Wed Jul  3 17:37:48 2024
Local storage:
  Cache size (GiB): 0.0 / 5.0 ( 0.00%)
  Files:              0
  Hits:               0
  Misses:             0
  Reads:              0
  Writes:             0
[32;1m$ cmake --build . --parallel[0;m
[0/2] Re-checking globbed directories...
[1/1932] Generating share/nrn/demo/demo.ses
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[17/1932] Generating share/nrn/demo/release.hoc
[18/1932] Update hh.mod for CoreNEURON compatibility
[19/1932] Generating share/nrn/demo/release.ses
[20/1932] Generating share/nrn/demo/reconst.hoc
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[41/1932] Generating share/nrn/lib/cleanup
[42/1932] Generating share/nrn/demo/sync/synchronize.hoc
[43/1932] Generating share/nrn/demo/testca.hoc
[44/1932] Generating share/nrn/lib/auditscripts/notes
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[173/1932] Generating share/nrn/lib/python/neuron/coreneuron.py
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[185/1932] Generating share/nrn/lib/python/neuron/neuroml/metadata.py
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[194/1932] Generating share/nrn/lib/python/neuron/rxd/__init__.py
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    ^
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      __ptr_.second()(__tmp);
      ^
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                  ^
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    auto blame_printer = utils::make_blame(blame_line);
                         ^
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[533/1932] [FLEX][modlunitlexer] Building scanner with flex 2.6.4
[534/1932] Linking CXX shared library lib/librxdmath.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[535/1932] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[536/1932] [FLEX][nocmodllexer] Building scanner with flex 2.6.4
[537/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnran123.cpp.o
[538/1932] Linking CXX static library lib/libnrngnu.a
[539/1932] [BISON][modlunitparser] Building parser with bison 3.8.2
[540/1932] [BISON][ocparser] Building parser with bison 3.8.2
../src/oc/parse.ypp: warning: 108 shift/reduce conflicts [-Wconflicts-sr]
../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[541/1932] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[542/1932] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/json_printer.cpp.o
[543/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/consist.cpp.o
[544/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/declare.cpp.o
[545/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/init.cpp.o
[546/1932] cd /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[547/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/io.cpp.o
[548/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/kinunit.cpp.o
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[550/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/model.cpp.o
[551/1932] Building CXX object external/nmodl/src/pybind/CMakeFiles/pyembed.dir/pyembed.cpp.o
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[553/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/passn.cpp.o
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[556/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/version.cpp.o
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[559/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/corenrn_parameters.cpp.o
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[566/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/init.cpp.o
[567/1932] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/logger.cpp.o
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[569/1932] -- NMODL : GENERATING NMODL LEXER WITH FLEX! --
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[571/1932] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! --
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[574/1932] -- NMODL : GENERATING C(11) LEXER WITH FLEX! --
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[577/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/list.cpp.o
[578/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/noccout.cpp.o
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[595/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/modl.cpp.o
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[655/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/version.cpp.o
[656/1932] Generating ../oc/hocusr.h
[657/1932] Generating ../../share/nrn/nrnmain.cpp
[658/1932] cd /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/src/nrniv && true
[659/1932] Generating ../../include/nrnmpiuse.h
[660/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/json_visitor.cpp.o
[661/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o
[662/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o
[663/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o
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[665/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/visitor_utils.cpp.o
[666/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_solver_visitor.cpp.o
[667/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/symtab_visitor.cpp.o
[668/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpython.cpp.o
[669/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_marching_cubes.cpp.o
[670/1932] Linking CXX static library lib/libvisitor.a
[671/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_p2h.cpp.o
[672/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_llgramarea.cpp.o
[673/1932] Generating ../../include/nrncvode/nrnneosm.h
[674/1932] Generating ../../include/nrnconf.h
[675/1932] Linking CXX static library lib/libcodegen.a
[676/1932] Linking CXX executable bin/nocmodl
[677/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/catch_chronometer.cpp.o
[678/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_intracellular.cpp.o
[679/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/grids.cpp.o
[680/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_benchmark_function.cpp.o
[681/1932] Linking CXX executable bin/nmodl
[682/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generator_exception.cpp.o
[683/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_analyse.cpp.o
[684/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_run_for_at_least.cpp.o
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[687/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_extracellular.cpp.o
[688/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_vol.cpp.o
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[690/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_automake.cpp.o
[691/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_hoc.cpp.o
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:9:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, _object *), _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:169:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, _object *), Args = <_object *&, _object *&>]
    return nrn::convert_cxx_exceptions(nrnexec, self, args);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:9:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(PyHocObject *&, _object *&))(PyHocObject *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(PyHocObject *, _object *), PyHocObject *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:2458:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(PyHocObject *, _object *), Args = <PyHocObject *&, _object *&>]
    return nrn::convert_cxx_exceptions(hocobj_same, pself, args);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(PyHocObject *&, _object *&))(PyHocObject *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
2 warnings generated.
[692/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_compact.cpp.o
[693/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_common_base.cpp.o
[694/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_event_listener.cpp.o
[695/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_nrn.cpp.o
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(_object *&, _object *&))(_object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(_object *, _object *), _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:207:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(_object *, _object *), Args = <_object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPySecObj_contains, sec, obj);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(_object *&, _object *&))(_object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPySecObj *&, _object *&, _object *&))(NPySecObj *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPySecObj *, _object *, _object *), NPySecObj *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:431:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPySecObj *, _object *, _object *), Args = <NPySecObj *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPySecObj_init, self, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPySecObj *&, _object *&, _object *&))(NPySecObj *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPyAllSegOfSecIter *&, _object *&, _object *&))(NPyAllSegOfSecIter *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPyAllSegOfSecIter *, _object *, _object *), NPyAllSegOfSecIter *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:449:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPyAllSegOfSecIter *, _object *, _object *), Args = <NPyAllSegOfSecIter *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPyAllSegOfSecIter_init, self, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPyAllSegOfSecIter *&, _object *&, _object *&))(NPyAllSegOfSecIter *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_typeobject *&, _object *&, _object *&))(_typeobject *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_typeobject *, _object *, _object *), _typeobject *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:466:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_typeobject *, _object *, _object *), Args = <_typeobject *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPySecObj_new, type, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_typeobject *&, _object *&, _object *&))(_typeobject *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, _object *&, _object *&))(_object *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, _object *, _object *), _object *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:491:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, _object *, _object *), Args = <_object *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(nrnpy_newsecobj, self, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, _object *&, _object *&))(_object *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPySegObj *&, _object *&, _object *&))(NPySegObj *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPySegObj *, _object *, _object *), NPySegObj *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:579:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPySegObj *, _object *, _object *), Args = <NPySegObj *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPySegObj_init, self, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPySegObj *&, _object *&, _object *&))(NPySegObj *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPyMechObj *&, _object *&, _object *&))(NPyMechObj *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPyMechObj *, _object *, _object *), NPyMechObj *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:673:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPyMechObj *, _object *, _object *), Args = <NPyMechObj *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPyMechObj_init, self, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPyMechObj *&, _object *&, _object *&))(NPyMechObj *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPyRangeVar *&, _object *&, _object *&))(NPyRangeVar *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPyRangeVar *, _object *, _object *), NPyRangeVar *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:681:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPyRangeVar *, _object *, _object *), Args = <NPyRangeVar *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPyRangeVar_init, self, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPyRangeVar *&, _object *&, _object *&))(NPyRangeVar *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *&))(NPySecObj *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *), NPySecObj *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:691:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *), Args = <NPySecObj *&>]
    return nrn::convert_cxx_exceptions(NPySecObj_name, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *&))(NPySecObj *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *&, _object *&))(NPySecObj *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *, _object *), NPySecObj *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:738:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *, _object *), Args = <NPySecObj *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPySecObj_pt3dclear, self, args);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *&, _object *&))(NPySecObj *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&))(_object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *), _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:958:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *), Args = <_object *&>]
    return nrn::convert_cxx_exceptions(pysec_repr, p);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&))(_object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, _object *), _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1011:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, _object *), Args = <_object *&, _object *&>]
    return nrn::convert_cxx_exceptions(nrnpy_set_psection, self, args);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *const &))(NPySecObj *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *), NPySecObj *const &>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1161:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *), Args = <NPySecObj *const &>]
    return nrn::convert_cxx_exceptions(pysec_children, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *const &))(NPySecObj *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<long (*(_object *&))(_object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<long (*)(_object *), _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1229:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = long (*)(_object *), Args = <_object *&>]
    return nrn::convert_cxx_exceptions(pysec_hash, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<long (*(_object *&))(_object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegObj *&, _object *&, int &))(NPySegObj *, _object *, int)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegObj *, _object *, int), NPySegObj *&, _object *&, int &>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1255:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegObj *, _object *, int), Args = <NPySegObj *&, _object *&, int &>]
    return nrn::convert_cxx_exceptions(pyseg_richcmp, self, other, op);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegObj *&, _object *&, int &))(NPySegObj *, _object *, int)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *&, _object *&, int &))(NPySecObj *, _object *, int)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *, _object *, int), NPySecObj *&, _object *&, int &>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1278:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *, _object *, int), Args = <NPySecObj *&, _object *&, int &>]
    return nrn::convert_cxx_exceptions(pysec_richcmp, self, other, op);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *&, _object *&, int &))(NPySecObj *, _object *, int)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechObj *&))(NPyMechObj *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechObj *), NPyMechObj *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1312:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechObj *), Args = <NPyMechObj *&>]
    return nrn::convert_cxx_exceptions(NPyMechObj_name, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechObj *&))(NPyMechObj *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechFunc *&))(NPyMechFunc *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechFunc *), NPyMechFunc *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1325:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechFunc *), Args = <NPyMechFunc *&>]
    return nrn::convert_cxx_exceptions(NPyMechFunc_name, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechFunc *&))(NPyMechFunc *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechFunc *&, _object *&))(NPyMechFunc *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechFunc *, _object *), NPyMechFunc *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1355:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechFunc *, _object *), Args = <NPyMechFunc *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPyMechFunc_call, self, args);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechFunc *&, _object *&))(NPyMechFunc *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyRangeVar *&))(NPyRangeVar *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyRangeVar *), NPyRangeVar *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1434:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyRangeVar *), Args = <NPyRangeVar *&>]
    return nrn::convert_cxx_exceptions(NPyRangeVar_name, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyRangeVar *&))(NPyRangeVar *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyAllSegOfSecIter *&))(NPyAllSegOfSecIter *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyAllSegOfSecIter *), NPyAllSegOfSecIter *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1644:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyAllSegOfSecIter *), Args = <NPyAllSegOfSecIter *&>]
    return nrn::convert_cxx_exceptions(allseg_of_sec_iter, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyAllSegOfSecIter *&))(NPyAllSegOfSecIter *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegOfSecIter *&))(NPySegOfSecIter *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegOfSecIter *), NPySegOfSecIter *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1696:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegOfSecIter *), Args = <NPySegOfSecIter *&>]
    return nrn::convert_cxx_exceptions(seg_of_sec_next, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegOfSecIter *&))(NPySegOfSecIter *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegObj *&))(NPySegObj *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegObj *), NPySegObj *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1717:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegObj *), Args = <NPySegObj *&>]
    return nrn::convert_cxx_exceptions(seg_point_processes, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegObj *&))(NPySegObj *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechOfSegIter *&))(NPyMechOfSegIter *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechOfSegIter *), NPyMechOfSegIter *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2141:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechOfSegIter *), Args = <NPyMechOfSegIter *&>]
    return nrn::convert_cxx_exceptions(mech_of_seg_next, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechOfSegIter *&))(NPyMechOfSegIter *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyVarOfMechIter *&))(NPyVarOfMechIter *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyVarOfMechIter *), NPyVarOfMechIter *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2181:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyVarOfMechIter *), Args = <NPyVarOfMechIter *&>]
    return nrn::convert_cxx_exceptions(var_of_mech_next, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyVarOfMechIter *&))(NPyVarOfMechIter *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegObj *&, _object *&))(NPySegObj *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegObj *, _object *), NPySegObj *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2298:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegObj *, _object *), Args = <NPySegObj *&, _object *&>]
    return nrn::convert_cxx_exceptions(segment_getattro, self, pyname);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegObj *&, _object *&))(NPySegObj *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechObj *&, _object *&))(NPyMechObj *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechObj *, _object *), NPyMechObj *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2542:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechObj *, _object *), Args = <NPyMechObj *&, _object *&>]
    return nrn::convert_cxx_exceptions(mech_getattro, self, pyname);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechObj *&, _object *&))(NPyMechObj *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, long &))(_object *, long)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, long), _object *&, long &>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2688:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, long), Args = <_object *&, long &>]
    return nrn::convert_cxx_exceptions(rv_getitem, self, ix);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, long &))(_object *, long)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11:
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(_object *&, long &, _object *&))(_object *, long, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(_object *, long, _object *), _object *&, long &, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2736:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(_object *, long, _object *), Args = <_object *&, long &, _object *&>]
    return nrn::convert_cxx_exceptions(rv_setitem, self, ix, value);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(_object *&, long &, _object *&))(_object *, long, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
29 warnings generated.
[696/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_cumulative_base.cpp.o
[697/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_console.cpp.o
[698/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_registrars.cpp.o
[699/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd.cpp.o
[700/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_helpers.cpp.o
[701/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_multi.cpp.o
[702/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_streaming_base.cpp.o
[703/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_junit.cpp.o
[704/1932] Generating ../nrnoc/exp2syn.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp
Thread Safe
[705/1932] Generating ../nrnoc/apcount.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/apcount.cpp
Thread Safe
[706/1932] Generating ../nrnoc/feature.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/feature.cpp
Notice: VERBATIM blocks are not thread safe
[707/1932] Generating ../nrnoc/expsyn.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/expsyn.cpp
Thread Safe
[708/1932] Generating ../nrnoc/hh.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/hh.cpp
Thread Safe
    [709/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_sonarqube.cpp.o
[710/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_tap.cpp.o
[711/1932] Generating ../nrnoc/netstim.cpp

Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/netstim.cpp
Thread Safe
[712/1932] Generating ../nrnoc/intfire2.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/intfire2.cpp
Thread Safe
[713/1932] Generating ../nrnoc/intfire1.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/intfire1.cpp
Thread Safe
[714/1932] Generating ../nrnoc/intfire4.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/intfire4.cpp
Thread Safe
[715/1932] Generating ../nrnoc/oclmp.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/oclmp.cpp
Thread Safe
[716/1932] Generating ../nrnoc/passive.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/passive.cpp
Thread Safe
[717/1932] Generating ../nrnoc/pattern.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/pattern.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[718/1932] Generating ../nrnoc/ppmark.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/ppmark.cpp
Thread Safe
[719/1932] Generating ../nrnoc/svclmp.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/svclmp.cpp
Thread Safe
[720/1932] Generating ../nrnoc/stim.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/stim.cpp
Thread Safe
[721/1932] Generating ../nrnoc/syn.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/syn.cpp
Thread Safe
[722/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_json.cpp.o
[723/1932] Generating ../nrnoc/vclmp.cpp
Translating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/nrnoc/vclmp.cpp
Notice: VERBATIM blocks are not thread safe
Notice: LINEAR is not thread safe.
[724/1932] Running nrnivmodl-core with internal mod files
WARNING: No mod files found in '/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/bin', compiling default ones only!
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
[725/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_teamcity.cpp.o
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[727/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_registry_hub.cpp.o
[728/1932] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/apwindow.cpp.o
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/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/src/ivoc/mymath.cpp:2:14: warning: '#pragma FENV_ACCESS' is not supported on this target - ignored [-Wignored-pragmas]
#pragma STDC FENV_ACCESS ON
             ^
1 warning generated.
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[1252/1932] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand_pp.mod
[1253/1932] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata.inc
[1254/1932] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata.mod
[1255/1932] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_ppts.mod
[1256/1932] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_pp.mod
[1257/1932] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_ts.mod
[1258/1932] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod
[1259/1932] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod
[1260/1932] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod
[1261/1932] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod
[1262/1932] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod
[1263/1932] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod
[1264/1932] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod
[1265/1932] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod
[1266/1932] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod
[1267/1932] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod
[1268/1932] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod
[1269/1932] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod
[1270/1932] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_BUILD=0
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
Traceback (most recent call last):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
    section = defn.get("tool", {})[tool_name]
KeyError: 'setuptools_scm'
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:167: UserWarning: "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:creating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:creating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:creating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/coreneuron_available.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:creating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:creating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:creating /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:building 'neuron.hoc' extension
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -DCORENRN_BUILD=0=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../
ld: warning: -undefined dynamic_lookup may not work with chained fixups
INFO:root:running build_scripts
INFO:root:creating build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755
[1271/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.inc
[1272/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.mod
[1273/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial_pp.mod
[1274/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/bacur.mod
[1275/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/banocur.mod
[1276/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/fornetcon.mod
[1277/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/green.mod
[1278/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/invlfire.mod
[1279/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/natrans.mod
[1280/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/netmove.mod
[1281/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/noisychan.mod
[1282/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/red.mod
[1283/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/sample.mod
[1284/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/unitstest.mod
[1285/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/version_macros.mod
[1286/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange.mod
[1287/1932] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange2.mod
[1288/1932] Building special[-core] for test group datahandle
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453
cfiles =
Mod files: "./opaque_token.mod" "./ptr.mod"

MODOBJS= ./opaque_token.o ./ptr.o
 -> Compiling mod_func.cpp
 -> NMODL .././ptr.mod
 -> NMODL .././opaque_token.mod
Translating ptr.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp
Notice: Use of POINTER is not thread safe.
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp
Translating opaque_token.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp
Notice: VERBATIM blocks are not thread safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1289/1932] Generating datahandle/datahandle_tests/test/datahandle/test_1.py
[1290/1932] Generating datahandle/datahandle_tests/test/datahandle/test_token.py
[1291/1932] Linking CXX executable bin/test/hh_sim_cpp
[1292/1932] Linking CXX executable bin/test/netcon_cpp
[1293/1932] Linking CXX executable bin/test/sections_c
[1294/1932] Linking CXX executable bin/test/vclamp_cpp
[1295/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod
[1296/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod
[1297/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
[1298/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
[1299/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod
[1300/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod
[1301/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
[1302/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod
[1303/1932] Building special[-core] for test group coverage_tests
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51
cfiles =
Mod files: "./ppxsrc.mod"

MODOBJS= ./ppxsrc.o
 -> Compiling mod_func.cpp
 -> NMODL .././ppxsrc.mod
Translating ppxsrc.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1304/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
[1305/1932] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json
[1306/1932] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py
[1307/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
[1308/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
[1309/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod
[1310/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
[1311/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod
[1312/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod
[1313/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod
[1314/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod
[1315/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod
[1316/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod
[1317/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod
[1318/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod
[1319/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
[1320/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod
[1321/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
[1322/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod
[1323/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod
[1324/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod
[1325/1932] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod
[1326/1932] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod
[1327/1932] Building special[-core] for test group pytest
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c
cfiles =
Mod files: "./mcna.mod"

MODOBJS= ./mcna.o
 -> Compiling mod_func.cpp
 -> NMODL .././mcna.mod
Translating mcna.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1328/1932] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json
[1329/1932] Building special[-core] for test group parallel
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
 -> Compiling mod_func.cpp
 -> NMODL .././name_clashes.mod
 -> NMODL .././gap.mod
 -> NMODL .././follower.mod
Translating follower.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Thread Safe
 -> NMODL .././unitstest.mod
Translating name_clashes.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
Thread Safe
 -> NMODL .././version_macros.mod
Translating gap.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1330/1932] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py
[1331/1932] Generating parallel/subworld/test/parallel_tests/test_subworld.py
[1332/1932] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py
[1333/1932] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py
[1334/1932] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py
[1335/1932] Generating parallel/bas/test/parallel_tests/test_bas.py
[1336/1932] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py
[1337/1932] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json
[1338/1932] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py
[1339/1932] Generating ../../nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/halfgap.mod
[1340/1932] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
[1341/1932] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod
[1342/1932] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod
[1343/1932] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod
[1344/1932] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod
[1345/1932] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
[1346/1932] Building special[-core] for test group nmodl_tests
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5
cfiles =
Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod"

MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o
 -> Compiling mod_func.cpp
 -> NMODL .././cadif.mod
 -> NMODL .././disc.mod
 -> NMODL .././fornetcon.mod
Translating cadif.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Thread Safe
 -> NMODL .././hhwatch.mod
Translating fornetcon.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
Thread Safe
Translating disc.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
Notice: DISCRETE is not thread safe.
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././k3st.mod
 -> NMODL .././table.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
Thread Safe
 -> NMODL .././variabletypes.mod
Translating table.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Translating k3st.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
NEURON's CVode method ignores conservation
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
Translating variabletypes.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1347/1932] Generating nmodl_tests/test_table/test/nmodl/test_table.py
[1348/1932] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py
[1349/1932] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py
[1350/1932] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py
[1351/1932] Generating nmodl_tests/test_random/test/nmodl/test_random.py
[1352/1932] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.mod
[1353/1932] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.py
[1354/1932] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py
[1355/1932] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py
[1356/1932] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py
[1357/1932] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py
[1358/1932] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfire.mod
[1359/1932] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfiresha.mod
[1360/1932] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfirestats.mod
[1361/1932] Building special[-core] for test group hoctests
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad
cfiles =
Mod files: "./atest.mod" "./rand.mod" "./rand_art.mod" "./rand_pp.mod" "./sdata.mod" "./sdata_pp.mod" "./sdata_ppts.mod" "./sdata_ts.mod"

MODOBJS= ./atest.o ./rand.o ./rand_art.o ./rand_pp.o ./sdata.o ./sdata_pp.o ./sdata_ppts.o ./sdata_ts.o
 -> Compiling mod_func.cpp
 -> NMODL .././atest.mod
 -> NMODL .././rand.mod
 -> NMODL .././rand_art.mod
Translating rand.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp
Thread Safe
Translating rand_art.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp
Thread Safe
 -> NMODL .././rand_pp.mod
 -> NMODL .././sdata.mod
Translating atest.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp
Thread Safe
 -> NMODL .././sdata_pp.mod
Translating sdata_pp.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Translating rand_pp.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp
Thread Safe
 -> NMODL .././sdata_ts.mod
 -> NMODL .././sdata_ppts.mod
Translating sdata.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp
Translating sdata_ppts.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp
INCLUDEing sdata.inc
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp
Translating sdata_ts.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp
INCLUDEing sdata.inc
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1362/1932] Generating hoctests/test_loadbal_hoc/expect_err.hoc
[1363/1932] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc
[1364/1932] Generating hoctests/test_random_hoc/expect_err.hoc
[1365/1932] Generating hoctests/test_random_hoc/tests/test_random.hoc
[1366/1932] Generating hoctests/test_random_hoc/tests/test_random.json
[1367/1932] Generating hoctests/perf1_hoc/expect_err.hoc
[1368/1932] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc
[1369/1932] Generating hoctests/test1_hoc/expect_err.hoc
[1370/1932] Generating hoctests/test1_hoc/vardimtests/test1.hoc
[1371/1932] Generating hoctests/test2_hoc/expect_err.hoc
[1372/1932] Generating hoctests/test2_hoc/vardimtests/test2.hoc
[1373/1932] Generating hoctests/test3_hoc/expect_err.hoc
[1374/1932] Generating hoctests/test3_hoc/vardimtests/test3.hoc
[1375/1932] Generating hoctests/test4_hoc/expect_err.hoc
[1376/1932] Generating hoctests/test4_hoc/vardimtests/test4.hoc
[1377/1932] Generating hoctests/test5_hoc/expect_err.hoc
[1378/1932] Generating hoctests/test5_hoc/vardimtests/test5.hoc
[1379/1932] Generating hoctests/test6_hoc/expect_err.hoc
[1380/1932] Generating hoctests/test6_hoc/vardimtests/test6.hoc
[1381/1932] Generating hoctests/test7_hoc/expect_err.hoc
[1382/1932] Generating hoctests/test7_hoc/vardimtests/test7.hoc
[1383/1932] Generating hoctests/test8_hoc/expect_err.hoc
[1384/1932] Generating hoctests/test8_hoc/vardimtests/test8.hoc
[1385/1932] Generating hoctests/test9_hoc/expect_err.hoc
[1386/1932] Generating hoctests/test9_hoc/vardimtests/test9.hoc
[1387/1932] Generating hoctests/test_bbss_py/tests/test_bbss.py
[1388/1932] Generating hoctests/test_cvinterp_py/tests/test_cvinterp.py
[1389/1932] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py
[1390/1932] Generating hoctests/test_hocmech_py/tests/test_hocmech.py
[1391/1932] Generating hoctests/test_kschan_py/tests/test_kschan.json
[1392/1932] Generating hoctests/test_kschan_py/tests/test_kschan.py
[1393/1932] Generating hoctests/test_legacy_setpointer_py/tests/test_legacy_setpointer.py
[1394/1932] Generating hoctests/test_mechfunc_py/tests/test_mechfunc.py
[1395/1932] Generating hoctests/test_mechstd_py/tests/test_mechstd.py
[1396/1932] Generating hoctests/test_mode_py/tests/test_mode.py
[1397/1932] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json
[1398/1932] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py
[1399/1932] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py
[1400/1932] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.json
[1401/1932] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.py
[1402/1932] Generating hoctests/test_random_py/tests/test_random.json
[1403/1932] Generating hoctests/test_random_py/tests/test_random.py
[1404/1932] Generating hoctests/test_setdata_py/tests/test_setdata.py
[1405/1932] Generating hoctests/test_shape_py/tests/test_shape.py
[1406/1932] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py
[1407/1932] Generating hoctests/test1_py/vardimtests/test1.py
[1408/1932] Generating hoctests/test2_py/vardimtests/test2.py
[1409/1932] Generating hoctests/test9_py/vardimtests/test9.py
[1410/1932] Building special[-core] for test group external_ringtest_nrn
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295
cfiles =
Mod files: "./halfgap.mod"

MODOBJS= ./halfgap.o
 -> NMODL .././halfgap.mod
 -> Compiling mod_func.cpp
Translating halfgap.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1411/1932] Generating ../../external_ringtest_nrn/optim_node_order/cell.hoc
[1412/1932] Generating ../../external_ringtest_nrn/optim_node_order/args.py
[1413/1932] Generating ../../external_ringtest_nrn/optim_node_order/celluniform.hoc
[1414/1932] Generating ../../external_ringtest_nrn/optim_node_order/commonutils.py
[1415/1932] Generating ../../external_ringtest_nrn/optim_node_order/ranparm.py
[1416/1932] Generating ../../external_ringtest_nrn/optim_node_order/ring.py
[1417/1932] Generating ../../external_ringtest_nrn/optim_node_order/ringtest.py
[1418/1932] Generating ../../external_ringtest_nrn/optim_node_order/ringuniform.py
[1419/1932] Generating ../../external_ringtest_nrn/optim_node_order/settings.py
[1420/1932] Generating ../../external_ringtest_nrn/optim_node_order/test_optimize_node_order.py
[1421/1932] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"

MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
 -> Compiling mod_func.cpp
 -> NMODL ../cabpump.mod
 -> NMODL ../cachan1.mod
 -> NMODL ../camchan.mod
Translating camchan.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
Thread Safe
 -> NMODL ../capump.mod
Translating cachan1.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Thread Safe
 -> NMODL ../invlfire.mod
Translating cabpump.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL ../khhchan.mod
Translating capump.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
Thread Safe
 -> NMODL ../nacaex.mod
Translating khhchan.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
 -> NMODL ../nachan.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
Thread Safe
 -> NMODL ../release.mod
Translating nacaex.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
Translating nachan.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Translating release.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1422/1932] Building special[-core] for test group pytest_coreneuron
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././follower.mod
 -> NMODL .././gap.mod
 -> NMODL .././name_clashes.mod
Translating name_clashes.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
Thread Safe
Translating gap.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
Translating follower.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Thread Safe
Thread Safe
 -> NMODL .././unitstest.mod
 -> NMODL .././version_macros.mod
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
Thread Safe
Translating version_macros.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1423/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py
[1424/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py
[1425/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py
[1426/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py
[1427/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py
[1428/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_coreneuron_configuration.py
[1429/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py
[1430/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py
[1431/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_imem.py
[1432/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py
[1433/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py
[1434/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py
[1435/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py
[1436/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py
[1437/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py
[1438/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py
[1439/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json
[1440/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py
[1441/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py
[1442/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py
[1443/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py
[1444/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py
[1445/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py
[1446/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py
[1447/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py
[1448/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py
[1449/1932] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py
[1450/1932] Building special[-core] for test group external_ringtest
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff
cfiles =
Mod files: "./halfgap.mod"

MODOBJS= ./halfgap.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1451/1932] Generating ../../external_ringtest/neuron/args.py
[1452/1932] Generating ../../external_ringtest/neuron/cell.hoc
[1453/1932] Generating ../../external_ringtest/neuron/celluniform.hoc
[1454/1932] Generating ../../external_ringtest/neuron/commonutils.py
[1455/1932] Generating ../../external_ringtest/neuron/ranparm.py
[1456/1932] Generating ../../external_ringtest/neuron/ring.py
[1457/1932] Generating ../../external_ringtest/neuron/ringuniform.py
[1458/1932] Generating ../../external_ringtest/neuron/ringtest.py
[1459/1932] Generating ../../external_ringtest/neuron/settings.py
[1460/1932] Generating ../../external_ringtest/neuron/test_optimize_node_order.py
[1461/1932] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc
[1462/1932] Generating ../../external_ringtest/neuron_mpi/args.py
[1463/1932] Generating ../../external_ringtest/neuron_mpi/cell.hoc
[1464/1932] Generating ../../external_ringtest/neuron_mpi/commonutils.py
[1465/1932] Generating ../../external_ringtest/neuron_mpi/ranparm.py
[1466/1932] Generating ../../external_ringtest/neuron_mpi/ringtest.py
[1467/1932] Generating ../../external_ringtest/neuron_mpi/ring.py
[1468/1932] Generating ../../external_ringtest/neuron_mpi/ringuniform.py
[1469/1932] Generating ../../external_ringtest/neuron_mpi/settings.py
[1470/1932] Generating ../../external_ringtest/neuron_mpi/test_optimize_node_order.py
[1471/1932] Generating ../../external_ringtest/neuron_mpi_python/args.py
[1472/1932] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py
[1473/1932] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc
[1474/1932] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc
[1475/1932] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py
[1476/1932] Generating ../../external_ringtest/neuron_mpi_python/ring.py
[1477/1932] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py
[1478/1932] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py
[1479/1932] Generating ../../external_ringtest/neuron_mpi_python/settings.py
[1480/1932] Generating ../../external_ringtest/neuron_mpi_python/test_optimize_node_order.py
[1481/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py
[1482/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc
[1483/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc
[1484/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py
[1485/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py
[1486/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py
[1487/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py
[1488/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py
[1489/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py
[1490/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/test_optimize_node_order.py
[1491/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py
[1492/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc
[1493/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc
[1494/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py
[1495/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py
[1496/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py
[1497/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py
[1498/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py
[1499/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py
[1500/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py
[1501/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc
[1502/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi/test_optimize_node_order.py
[1503/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py
[1504/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc
[1505/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py
[1506/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py
[1507/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py
[1508/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py
[1509/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py
[1510/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/test_optimize_node_order.py
[1511/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py
[1512/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc
[1513/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py
[1514/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc
[1515/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py
[1516/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py
[1517/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py
[1518/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py
[1519/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py
[1520/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/test_optimize_node_order.py
[1521/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py
[1522/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc
[1523/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc
[1524/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py
[1525/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py
[1526/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py
[1527/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py
[1528/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py
[1529/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py
[1530/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/test_optimize_node_order.py
[1531/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py
[1532/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc
[1533/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc
[1534/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py
[1535/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py
[1536/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py
[1537/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py
[1538/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py
[1539/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/test_optimize_node_order.py
[1540/1932] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py
[1541/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/args.py
[1542/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/cell.hoc
[1543/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/commonutils.py
[1544/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/celluniform.hoc
[1545/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ranparm.py
[1546/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ring.py
[1547/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ringuniform.py
[1548/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ringtest.py
[1549/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/settings.py
[1550/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/args.py
[1551/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/test_optimize_node_order.py
[1552/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/commonutils.py
[1553/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/cell.hoc
[1554/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/celluniform.hoc
[1555/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ranparm.py
[1556/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ring.py
[1557/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ringtest.py
[1558/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/settings.py
[1559/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ringuniform.py
[1560/1932] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/test_optimize_node_order.py
[1561/1932] Building special[-core] for test group tqperf
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951
cfiles =
Mod files: "./invlfire.mod" "./invlfiresha.mod" "./invlfirestats.mod"

MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build INCFLAGS=-I/opt/homebrew/Cellar/openssl@3/3.2.0_1/include LINKFLAGS=/opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
arm64/corenrn/mod2c/invlfiresha.cpp:313:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Init((SHA_CTX*)(*ctx));
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
arm64/corenrn/mod2c/invlfiresha.cpp:318:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Update((SHA_CTX*)ctx, data, len);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
arm64/corenrn/mod2c/invlfiresha.cpp:329:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Final(u.md, (SHA_CTX*)ctx);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
3 warnings generated.
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././invlfire.mod
 -> NMODL .././invlfiresha.mod
 -> NMODL .././invlfirestats.mod
Translating invlfirestats.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp
Translating invlfiresha.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp
Translating invlfire.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:371:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Init((SHA_CTX*)(*ctx));
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:376:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Update((SHA_CTX*)ctx, data, len);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:387:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Final(u.md, (SHA_CTX*)ctx);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
3 warnings generated.
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/./special" LDFLAGS are:    /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib
Successfully created arm64/special
[1562/1932] Generating ../../tqperf/coreneuron_special/extracell.hoc
[1563/1932] Generating ../../tqperf/coreneuron_special/invl.hoc
[1564/1932] Generating ../../tqperf/coreneuron_special/init.hoc
[1565/1932] Generating ../../tqperf/coreneuron_special/movie.hoc
[1566/1932] Generating ../../tqperf/coreneuron_special/net.hoc
[1567/1932] Generating ../../tqperf/coreneuron_special/param.hoc
[1568/1932] Generating ../../tqperf/coreneuron_special/mosinit.hoc
[1569/1932] Generating ../../tqperf/coreneuron_special/perfrun.hoc
[1570/1932] Generating ../../tqperf/coreneuron_special/run.hoc
[1571/1932] Generating ../../tqperf/coreneuron_special/randist.hoc
[1572/1932] Generating ../../tqperf/coreneuron_special/pltq.hoc
[1573/1932] Generating ../../tqperf/coreneuron_special/runs.hoc
[1574/1932] Generating ../../tqperf/coreneuron_special/spike2file.hoc
[1575/1932] Generating ../../tqperf/coreneuron_special/run128.hoc
[1576/1932] Generating ../../tqperf/coreneuron_special/spkplt.hoc
[1577/1932] Generating ../../tqperf/coreneuron_special/test1.py
[1578/1932] Generating ../../tqperf/coreneuron_special/table.hoc
[1579/1932] Generating ../../tqperf/coreneuron_special/tperf.hoc
[1580/1932] Generating ../../tqperf/coreneuron_special/tperfnew.hoc
[1581/1932] Generating ../../tqperf/coreneuron_python/init.hoc
[1582/1932] Generating ../../tqperf/coreneuron_python/extracell.hoc
[1583/1932] Generating ../../tqperf/coreneuron_python/mosinit.hoc
[1584/1932] Generating ../../tqperf/coreneuron_python/invl.hoc
[1585/1932] Generating ../../tqperf/coreneuron_python/movie.hoc
[1586/1932] Generating ../../tqperf/coreneuron_python/net.hoc
[1587/1932] Generating ../../tqperf/coreneuron_python/perfrun.hoc
[1588/1932] Generating ../../tqperf/coreneuron_python/param.hoc
[1589/1932] Generating ../../tqperf/coreneuron_python/pltq.hoc
[1590/1932] Generating ../../tqperf/coreneuron_python/randist.hoc
[1591/1932] Generating ../../tqperf/coreneuron_python/run.hoc
[1592/1932] Generating ../../tqperf/coreneuron_python/run128.hoc
[1593/1932] Generating ../../tqperf/coreneuron_python/runs.hoc
[1594/1932] Generating ../../tqperf/coreneuron_python/spkplt.hoc
[1595/1932] Generating ../../tqperf/coreneuron_python/spike2file.hoc
[1596/1932] Generating ../../tqperf/coreneuron_python/table.hoc
[1597/1932] Generating ../../tqperf/coreneuron_python/test1.py
[1598/1932] Generating ../../tqperf/coreneuron_python/tperf.hoc
[1599/1932] Generating ../../tqperf/coreneuron_python/tperfnew.hoc
[1600/1932] Building special[-core] for test group testcorenrn_bbcore
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876
cfiles =
Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod"

MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././Gfluct3.mod
 -> NMODL .././hhkin.mod
 -> NMODL .././hhderiv.mod
Translating Gfluct3.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
Translating hhderiv.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
Translating hhkin.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
Thread Safe
Thread Safe
Thread Safe
 -> NMODL .././hhwatch.mod
 -> NMODL .././nacum.mod
 -> NMODL .././vecevent.mod
Translating nacum.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
Translating hhwatch.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
Thread Safe
Thread Safe
Translating vecevent.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1601/1932] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc
[1602/1932] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc
[1603/1932] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc
[1604/1932] Generating ../../testcorenrn_bbcore/neuron/common.hoc
[1605/1932] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc
[1606/1932] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc
[1607/1932] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc
[1608/1932] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1609/1932] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc
[1610/1932] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc
[1611/1932] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc
[1612/1932] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc
[1613/1932] Generating ../../testcorenrn_conc/neuron/common.hoc
[1614/1932] Generating ../../testcorenrn_conc/neuron/defvar.hoc
[1615/1932] Generating ../../testcorenrn_conc/neuron/testconc.hoc
[1616/1932] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc
[1617/1932] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc
[1618/1932] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc
[1619/1932] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc
[1620/1932] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1621/1932] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc
[1622/1932] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc
[1623/1932] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc
[1624/1932] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc
[1625/1932] Generating ../../testcorenrn_deriv/neuron/common.hoc
[1626/1932] Generating ../../testcorenrn_deriv/neuron/defvar.hoc
[1627/1932] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc
[1628/1932] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc
[1629/1932] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc
[1630/1932] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc
[1631/1932] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc
[1632/1932] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1633/1932] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc
[1634/1932] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc
[1635/1932] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc
[1636/1932] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc
[1637/1932] Generating ../../testcorenrn_gf/neuron/defvar.hoc
[1638/1932] Generating ../../testcorenrn_gf/neuron/testgf.hoc
[1639/1932] Generating ../../testcorenrn_gf/neuron/common.hoc
[1640/1932] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc
[1641/1932] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc
[1642/1932] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc
[1643/1932] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc
[1644/1932] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1645/1932] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc
[1646/1932] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc
[1647/1932] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc
[1648/1932] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc
[1649/1932] Generating ../../testcorenrn_kin/neuron/common.hoc
[1650/1932] Generating ../../testcorenrn_kin/neuron/defvar.hoc
[1651/1932] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc
[1652/1932] Generating ../../testcorenrn_kin/neuron/testkin.hoc
[1653/1932] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc
[1654/1932] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc
[1655/1932] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1656/1932] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc
[1657/1932] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc
[1658/1932] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc
[1659/1932] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc
[1660/1932] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc
[1661/1932] Generating ../../testcorenrn_patstim/neuron/common.hoc
[1662/1932] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc
[1663/1932] Generating ../../testcorenrn_patstim/neuron/defvar.hoc
[1664/1932] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc
[1665/1932] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc
[1666/1932] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc
[1667/1932] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc
[1668/1932] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc
[1669/1932] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc
[1670/1932] Generating ../../testcorenrn_vecplay/neuron/common.hoc
[1671/1932] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc
[1672/1932] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc
[1673/1932] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc
[1674/1932] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc
[1675/1932] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1676/1932] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc
[1677/1932] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc
[1678/1932] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc
[1679/1932] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc
[1680/1932] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc
[1681/1932] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc
[1682/1932] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc
[1683/1932] Generating ../../testcorenrn_vecevent/neuron/common.hoc
[1684/1932] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc
[1685/1932] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc
[1686/1932] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc
[1687/1932] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc
[1688/1932] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc
[1689/1932] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1690/1932] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc
[1691/1932] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc
[1692/1932] Generating ../../testcorenrn_watch/neuron/defvar.hoc
[1693/1932] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc
[1694/1932] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc
[1695/1932] Generating ../../testcorenrn_watch/neuron/common.hoc
[1696/1932] Generating ../../testcorenrn_watch/neuron/testwatch.hoc
[1697/1932] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc
[1698/1932] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1699/1932] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc
[1700/1932] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc
[1701/1932] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc
[1702/1932] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc
[1703/1932] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc
[1704/1932] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc
[1705/1932] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc
[1706/1932] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc
[1707/1932] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc
[1708/1932] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc
[1709/1932] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc
[1710/1932] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc
[1711/1932] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc
[1712/1932] Building special[-core] for test group coreneuron_modtests
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7
cfiles =
Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./green.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./noisychan.mod" "./red.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod" "./watchrange2.mod"

MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./green.o ./invlfire.o ./natrans.o ./netmove.o ./noisychan.o ./red.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o ./watchrange2.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././axial_pp.mod
 -> NMODL .././axial.mod
 -> NMODL .././bacur.mod
Translating axial_pp.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial_pp.cpp
INCLUDEing axial.inc
Translating axial.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial.cpp
INCLUDEing axial.inc
Translating bacur.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/bacur.cpp
Thread Safe
Thread Safe
Thread Safe
 -> NMODL .././banocur.mod
 -> NMODL .././fornetcon.mod
 -> NMODL .././green.mod
Translating banocur.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/banocur.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Translating fornetcon.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/fornetcon.cpp
Translating green.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/green.cpp
Warning: dt undefined. (declared within VERBATIM?)
Thread Safe
Thread Safe
 -> NMODL .././invlfire.mod
 -> NMODL .././natrans.mod
 -> NMODL .././netmove.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/invlfire.cpp
Thread Safe
Translating natrans.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/natrans.cpp
 -> NMODL .././noisychan.mod
Thread Safe
Translating netmove.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/netmove.cpp
Thread Safe
 -> NMODL .././red.mod
 -> NMODL .././sample.mod
Translating noisychan.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/noisychan.cpp
Thread Safe
Translating red.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/red.cpp
Thread Safe
 -> NMODL .././unitstest.mod
Translating sample.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/sample.cpp
Thread Safe
 -> NMODL .././version_macros.mod
 -> NMODL .././watchrange.mod
Translating unitstest.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/unitstest.cpp
Thread Safe
Translating version_macros.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/version_macros.cpp
Thread Safe
Translating watchrange.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange.cpp
 -> NMODL .././watchrange2.mod
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial_pp.cpp
Translating watchrange2.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange2.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/bacur.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/banocur.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/fornetcon.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/green.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/invlfire.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/natrans.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/netmove.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/noisychan.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/red.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/sample.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/unitstest.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/version_macros.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange2.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1713/1932] Generating coreneuron_modtests/version_macros/test/pytest_coreneuron/test_version_macros.py
[1714/1932] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py
[1715/1932] Generating coreneuron_modtests/inputpresyn_py/test/coreneuron/test_inputpresyn.py
[1716/1932] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py
[1717/1932] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py
[1718/1932] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1719/1932] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc
[1720/1932] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py
[1721/1932] Generating coreneuron_modtests/fast_imem_py_cpu/test/pytest_coreneuron/test_fast_imem.py
[1722/1932] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py
[1723/1932] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py
[1724/1932] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py
[1725/1932] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py
[1726/1932] Generating coreneuron_modtests/test_nmodlrandom_py_cpu/test/coreneuron/test_nmodlrandom.py
[1727/1932] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py
[1728/1932] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py
[1729/1932] Generating coreneuron_modtests/array_variable_transfer_run_mode_0_py_cpu/test/coreneuron/test_array_variables_transfer.py
[1730/1932] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py
[1731/1932] Generating coreneuron_modtests/test_nmodlrandom_syntax_py_cpu/test/coreneuron/test_nmodlrandom_syntax.py
[1732/1932] Generating coreneuron_modtests/array_variable_transfer_run_mode_1_py_cpu/test/coreneuron/test_array_variables_transfer.py
[1733/1932] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1734/1932] Generating coreneuron_modtests/array_variable_transfer_run_mode_2_py_cpu/test/coreneuron/test_array_variables_transfer.py
[1735/1932] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py
[1736/1932] Generating coreneuron_modtests/array_variable_transfer_file_mode_py_cpu/test/coreneuron/test_array_variables_transfer.py
[1737/1932] Building special[-core] for test group example_nmodl
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2
cfiles =
Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod"

MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o
 -> Compiling mod_func.cpp
 -> NMODL .././argpass.mod
 -> NMODL .././cabpump.mod
 -> NMODL .././cachan.mod
Translating cabpump.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL .././cacum.mod
Translating cachan.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
Thread Safe
 -> NMODL .././cacur.mod
Translating argpass.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././cadif.mod
Translating cacur.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
Thread Safe
Translating cadif.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
Thread Safe
 -> NMODL .././cadifusl.mod
 -> NMODL .././cagk.mod
Translating cacum.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
Thread Safe
 -> NMODL .././cagkftab.mod
Translating cagk.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
Thread Safe
 -> NMODL .././capmp.mod
Translating cagkftab.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
Thread Safe
 -> NMODL .././expsynspine.mod
Translating cadifusl.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL .././fh.mod
Translating capmp.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
NEURON's CVode method ignores conservation
Thread Safe
Translating fh.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
INCLUDEing standard.inc
Notice: Assignment to the GLOBAL variable, "inf", is not thread safe
Notice: Assignment to the GLOBAL variable, "tau", is not thread safe
 -> NMODL .././fit1.mod
Translating expsynspine.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
Notice: LINEAR is not thread safe.
 -> NMODL .././gap.mod
 -> NMODL .././hh1.mod
Translating fit1.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././hhvect.mod
Translating gap.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
Notice: Use of POINTER is not thread safe.
 -> NMODL .././inatest.mod
Translating hh1.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp
Notice: This mechanism cannot be used with CVODE
Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe
Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "minf", is not thread safe
Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
 -> NMODL .././ionleak.mod
Translating hhvect.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
 -> NMODL .././nacum.mod
Translating inatest.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp
Translating ionleak.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp
Thread Safe
Thread Safe
 -> NMODL .././nacur.mod
 -> NMODL .././nadifl.mod
Translating nacum.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp
Thread Safe
 -> NMODL .././nonlin.mod
Translating nacur.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp
Thread Safe
Translating nadifl.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp
Thread Safe
 -> NMODL .././obj_ex.mod
 -> NMODL .././order.mod
Translating nonlin.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp
Notice: NONLINEAR is not thread safe.
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> NMODL .././passiv.mod
Translating obj_ex.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp
Thread Safe
Translating order.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp
Thread Safe
 -> NMODL .././rchan.mod
 -> NMODL .././stim1.mod
Translating rchan.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp
Notice: normrand is not thread safe
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././str.mod
Translating stim1.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp
Thread Safe
 -> NMODL .././syn1.mod
Translating passiv.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp
Thread Safe
 -> NMODL .././synpre.mod
Translating syn1.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp
Thread Safe
Translating str.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././trivial.mod
 -> NMODL .././tstdarray.mod
Translating synpre.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././tstextrn.mod
Translating trivial.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp
 -> NMODL .././tstpnt1.mod
Translating tstextrn.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp
Notice: Use of EXTERNAL is not thread safe.
 -> NMODL .././tstpnt2.mod
Translating tstdarray.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp
Thread Safe
 -> NMODL .././tstvec.mod
 -> NMODL .././vclmp1.mod
Translating tstvec.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././vlag.mod
Translating tstpnt1.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp
Notice: Use of POINTER is not thread safe.
Translating vclmp1.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
Notice: LINEAR is not thread safe.
Translating tstpnt2.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp
Notice: Use of POINTER is not thread safe.
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
Translating vlag.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1738/1932] Generating example_nmodl/cabpump_hoc/cabpump.hoc
[1739/1932] Generating example_nmodl/cachan_hoc/cachan.hoc
[1740/1932] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc
[1741/1932] Generating example_nmodl/cadif_hoc/cadif.ses
[1742/1932] Generating example_nmodl/cadif_hoc/cadif.hoc
[1743/1932] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc
[1744/1932] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc
[1745/1932] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc
[1746/1932] Generating example_nmodl/cv_hoc/cv.hoc
[1747/1932] Generating example_nmodl/cagk_hoc/cagk.hoc
[1748/1932] Generating example_nmodl/capmp_hoc/capmp.hoc
[1749/1932] Generating example_nmodl/fh_hoc/fh.hoc
[1750/1932] Generating example_nmodl/fit1_hoc/fit1.hoc
[1751/1932] Generating example_nmodl/gap_hoc/gap.hoc
[1752/1932] Generating example_nmodl/nacum_hoc/nacum.hoc
[1753/1932] Generating example_nmodl/hh1_hoc/hh1.hoc
[1754/1932] Generating example_nmodl/hhvect_hoc/hhvect.hoc
[1755/1932] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc
[1756/1932] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc
[1757/1932] Generating example_nmodl/nadifl1_hoc/nadifl1.ses
[1758/1932] Generating example_nmodl/nadifl2_hoc/nadifl2.ses
[1759/1932] Generating example_nmodl/nadifl3_hoc/nadifl3.ses
[1760/1932] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc
[1761/1932] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc
[1762/1932] Generating example_nmodl/nadifl4_hoc/nadifl4.ses
[1763/1932] Generating example_nmodl/order_hoc/order.hoc
[1764/1932] Generating example_nmodl/syn1_hoc/syn1.hoc
[1765/1932] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc
[1766/1932] Generating example_nmodl/stim1_hoc/stim1.hoc
[1767/1932] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc
[1768/1932] Generating example_nmodl/passiv_hoc/passiv.hoc
[1769/1932] Generating example_nmodl/synpre_hoc/synpre.hoc
[1770/1932] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc
[1771/1932] Generating example_nmodl/tstvec_hoc/tstvec.hoc
[1772/1932] Generating example_nmodl/cagkftab_py/cagkftab.py
[1773/1932] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc
[1774/1932] Generating example_nmodl/expsynspine_py/expsynspine.py
[1775/1932] Generating example_nmodl/expsynspine_py/expsynspine.ses
[1776/1932] Generating example_nmodl/nonlin_py/nonlin.py
[1777/1932] Generating example_nmodl/vlag_py/vlag.py
[1778/1932] Generating example_nmodl/tstpnt1_py/tstpnt1.py
[1779/1932] Generating example_nmodl/tstpnt2_py/tstpnt2.py
[1780/1932] Building special[-core] for test group reduced_dentate
/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead
cfiles =
Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod"

MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././Aradi_Ca.mod
 -> NMODL .././Aradi_CadepK.mod
 -> NMODL .././Aradi_KA.mod
Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp
Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp
Thread Safe
Thread Safe
Translating Aradi_KA.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp
Thread Safe
 -> NMODL .././Aradi_KDRf.mod
 -> NMODL .././Aradi_KDRs.mod
 -> NMODL .././Aradi_Na.mod
Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp
Translating Aradi_Na.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp
Thread Safe
Thread Safe
Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp
Thread Safe
 -> NMODL .././CaBK.mod
 -> NMODL .././DGC_M.mod
 -> NMODL .././DGC_UK.mod
Translating DGC_M.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp
Translating CaBK.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp
Thread Safe
Thread Safe
Translating DGC_UK.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp
Thread Safe
 -> NMODL .././DGC_sAHP.mod
 -> NMODL .././Gfluct3.mod
 -> NMODL .././LcaMig.mod
Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp
Thread Safe
Translating Gfluct3.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp
Translating LcaMig.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp
Thread Safe
Thread Safe
 -> NMODL .././SH_KIn.mod
 -> NMODL .././SH_na8st.mod
 -> NMODL .././bgka.mod
 -> NMODL .././ccanl.mod
Translating SH_KIn.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp
Thread Safe
Translating SH_na8st.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp
NEURON's CVode method ignores conservation
Thread Safe
Translating bgka.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp
 -> NMODL .././ggap.mod
Thread Safe
 -> NMODL .././gskch.mod
 -> NMODL .././holdingi.mod
Translating ccanl.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp
Thread Safe
 -> NMODL .././hyperde3.mod
Translating ggap.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp
Thread Safe
Translating gskch.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp
Thread Safe
Translating holdingi.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp
Thread Safe
 -> NMODL .././ichan2.mod
 -> NMODL .././iconc_Ca.mod
 -> NMODL .././kcaPR.mod
Translating hyperde3.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp
Thread Safe
 -> NMODL .././na3n.mod
Translating ichan2.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp
Thread Safe
Translating iconc_Ca.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp
Thread Safe
Translating kcaPR.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp
Thread Safe
 -> NMODL .././nca.mod
 -> NMODL .././spines.mod
 -> NMODL .././tca.mod
Translating na3n.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp
Thread Safe
 -> NMODL .././vecevent.mod
Translating nca.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp
Thread Safe
Translating spines.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp
Translating tca.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp
Translating vecevent.mod into /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1781/1932] Generating ../../reduced_dentate/neuron/commonutils.py
[1782/1932] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat
[1783/1932] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat
[1784/1932] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat
[1785/1932] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat
[1786/1932] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat
[1787/1932] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat
[1788/1932] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat
[1789/1932] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat
[1790/1932] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat
[1791/1932] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat
[1792/1932] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat
[1793/1932] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat
[1794/1932] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat
[1795/1932] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat
[1796/1932] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat
[1797/1932] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat
[1798/1932] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat
[1799/1932] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat
[1800/1932] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat
[1801/1932] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat
[1802/1932] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat
[1803/1932] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat
[1804/1932] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat
[1805/1932] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat
[1806/1932] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat
[1807/1932] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat
[1808/1932] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat
[1809/1932] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat
[1810/1932] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat
[1811/1932] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat
[1812/1932] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat
[1813/1932] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat
[1814/1932] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat
[1815/1932] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat
[1816/1932] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat
[1817/1932] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat
[1818/1932] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat
[1819/1932] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat
[1820/1932] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat
[1821/1932] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat
[1822/1932] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat
[1823/1932] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat
[1824/1932] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat
[1825/1932] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat
[1826/1932] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat
[1827/1932] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat
[1828/1932] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat
[1829/1932] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat
[1830/1932] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat
[1831/1932] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat
[1832/1932] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat
[1833/1932] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat
[1834/1932] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat
[1835/1932] Generating ../../reduced_dentate/neuron/parameters/Control.hoc
[1836/1932] Generating ../../reduced_dentate/neuron/lib.hoc
[1837/1932] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat
[1838/1932] Generating ../../reduced_dentate/neuron/main.hoc
[1839/1932] Generating ../../reduced_dentate/neuron/run.hoc
[1840/1932] Generating ../../reduced_dentate/neuron/templates/DGC.hoc
[1841/1932] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc
[1842/1932] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc
[1843/1932] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc
[1844/1932] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc
[1845/1932] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc
[1846/1932] Generating ../../reduced_dentate/neuron/templates/Dict.hoc
[1847/1932] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc
[1848/1932] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc
[1849/1932] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc
[1850/1932] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc
[1851/1932] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc
[1852/1932] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc
[1853/1932] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc
[1854/1932] Generating ../../reduced_dentate/neuron/templates/Value.hoc
[1855/1932] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc
[1856/1932] Generating ../../reduced_dentate/neuron/templates/defvar.hoc
[1857/1932] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py
[1858/1932] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat
[1859/1932] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat
[1860/1932] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat
[1861/1932] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat
[1862/1932] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat
[1863/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat
[1864/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat
[1865/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat
[1866/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat
[1867/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat
[1868/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat
[1869/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat
[1870/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat
[1871/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat
[1872/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat
[1873/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat
[1874/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat
[1875/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat
[1876/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat
[1877/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat
[1878/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat
[1879/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat
[1880/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat
[1881/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat
[1882/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat
[1883/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat
[1884/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat
[1885/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat
[1886/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat
[1887/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat
[1888/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat
[1889/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat
[1890/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat
[1891/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat
[1892/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat
[1893/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat
[1894/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat
[1895/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat
[1896/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat
[1897/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat
[1898/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat
[1899/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat
[1900/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat
[1901/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat
[1902/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat
[1903/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat
[1904/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat
[1905/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat
[1906/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat
[1907/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat
[1908/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat
[1909/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat
[1910/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat
[1911/1932] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat
[1912/1932] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc
[1913/1932] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc
[1914/1932] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc
[1915/1932] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc
[1916/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc
[1917/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc
[1918/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc
[1919/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc
[1920/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc
[1921/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc
[1922/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc
[1923/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc
[1924/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc
[1925/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc
[1926/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc
[1927/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc
[1928/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc
[1929/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc
[1930/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc
[1931/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc
[1932/1932] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc
[32;1m$ ccache -vs 2>/dev/null[0;m
Cache directory:    /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated:      Wed Jul  3 17:39:22 2024
Cacheable calls:     627 / 627 (100.0%)
  Hits:                2 / 627 ( 0.32%)
    Direct:            1 /   2 (50.00%)
    Preprocessed:      1 /   2 (50.00%)
  Misses:            625 / 627 (99.68%)
Successful lookups:
  Direct:              1 / 627 ( 0.16%)
  Preprocessed:        1 / 626 ( 0.16%)
Local storage:
  Cache size (GiB):  0.1 / 5.0 ( 2.19%)
  Files:            1186
  Hits:                2 / 627 ( 0.32%)
  Misses:            625 / 627 (99.68%)
  Reads:            1254
  Writes:           1186
[32;1m$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg[0;m
[32;1m$ cat src/nrnpython/setup.cfg[0;m
[install]
prefix=
[32;1m$ ctest --output-on-failure[0;m
Test project /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build
        Start 241: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start 251: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
  1/304 Test #251: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ..................   Passed    1.43 sec
        Start 257: testcorenrn_conc::coreneuron_cpu_offline::preparation
  2/304 Test #257: testcorenrn_conc::coreneuron_cpu_offline::preparation ....................   Passed    0.26 sec
        Start 263: testcorenrn_deriv::coreneuron_cpu_offline::preparation
  3/304 Test #263: testcorenrn_deriv::coreneuron_cpu_offline::preparation ...................   Passed    0.23 sec
        Start 275: testcorenrn_kin::coreneuron_cpu_offline::preparation
  4/304 Test #275: testcorenrn_kin::coreneuron_cpu_offline::preparation .....................   Passed    0.24 sec
        Start 159: pyinit::nrniv_py3.10_python_check_sys_path::preparation
  5/304 Test #159: pyinit::nrniv_py3.10_python_check_sys_path::preparation ..................   Passed    0.02 sec
        Start 161: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation
  6/304 Test #161: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ...............   Passed    0.02 sec
        Start 163: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation
  7/304 Test #241: external_ringtest::coreneuron_cpu_mpi_offline::preparation ...............   Passed    2.22 sec
        Start 269: testcorenrn_gf::coreneuron_cpu_offline::preparation
  8/304 Test #163: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................   Passed    0.02 sec
        Start 165: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation
  9/304 Test #165: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation .............   Passed    0.02 sec
        Start 167: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation
 10/304 Test #167: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ...........   Passed    0.02 sec
        Start 169: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation
 11/304 Test #169: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........   Passed    0.02 sec
        Start 171: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation
 12/304 Test #171: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ...........   Passed    0.02 sec
        Start 173: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation
 13/304 Test #173: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........   Passed    0.02 sec
        Start 175: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation
 14/304 Test #175: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ......   Passed    0.02 sec
        Start 177: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation
 15/304 Test #177: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ...   Passed    0.02 sec
        Start 179: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation
 16/304 Test #179: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation .......   Passed    0.02 sec
        Start 181: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation
 17/304 Test #181: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation ....   Passed    0.02 sec
        Start 183: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation
 18/304 Test #183: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........   Passed    0.02 sec
        Start 185: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation
 19/304 Test #269: testcorenrn_gf::coreneuron_cpu_offline::preparation ......................   Passed    0.25 sec
        Start 280: testcorenrn_patstim::coreneuron_cpu_offline::preparation
 20/304 Test #185: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation .....   Passed    0.02 sec
        Start 187: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation
 21/304 Test #187: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation .......   Passed    0.02 sec
        Start 189: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation
 22/304 Test #189: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation ....   Passed    0.02 sec
        Start 195: pyinit::nrniv_pydef_python_check_sys_path::preparation
 23/304 Test #195: pyinit::nrniv_pydef_python_check_sys_path::preparation ...................   Passed    0.02 sec
        Start 197: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
 24/304 Test #197: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................   Passed    0.02 sec
        Start 199: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
 25/304 Test #199: pyinit::nrniv_pydef_python_check_sys_prefix::preparation .................   Passed    0.02 sec
        Start 201: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
 26/304 Test #201: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation ..............   Passed    0.02 sec
        Start 203: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
 27/304 Test #203: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............   Passed    0.03 sec
        Start 205: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
 28/304 Test #205: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation .........   Passed    0.02 sec
        Start 207: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
 29/304 Test #207: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............   Passed    0.06 sec
        Start 209: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
 30/304 Test #209: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation .........   Passed    0.02 sec
        Start 211: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
 31/304 Test #280: testcorenrn_patstim::coreneuron_cpu_offline::preparation .................   Passed    0.28 sec
        Start 286: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
 32/304 Test #211: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation .......   Passed    0.02 sec
        Start 213: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
 33/304 Test #213: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation ....   Passed    0.02 sec
        Start 215: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
 34/304 Test #215: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........   Passed    0.02 sec
        Start 217: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
 35/304 Test #217: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation .....   Passed    0.02 sec
        Start 219: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
 36/304 Test #219: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation .........   Passed    0.02 sec
        Start 221: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
 37/304 Test #221: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ......   Passed    0.02 sec
        Start 223: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
 38/304 Test #223: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........   Passed    0.03 sec
        Start 225: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
 39/304 Test #225: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation .....   Passed    0.02 sec
        Start 233: external_ringtest::neuron
 40/304 Test #286: testcorenrn_vecplay::coreneuron_cpu_offline::preparation .................   Passed    0.24 sec
        Start 298: testcorenrn_watch::coreneuron_cpu_offline::preparation
 41/304 Test #298: testcorenrn_watch::coreneuron_cpu_offline::preparation ...................   Passed    0.24 sec
        Start 234: external_ringtest::neuron_mpi
 42/304 Test #234: external_ringtest::neuron_mpi ............................................   Passed    8.56 sec
        Start 235: external_ringtest::neuron_mpi_python
 43/304 Test #233: external_ringtest::neuron ................................................   Passed   16.41 sec
        Start 247: testcorenrn_bbcore::neuron
 44/304 Test #247: testcorenrn_bbcore::neuron ...............................................   Passed    0.24 sec
        Start 248: testcorenrn_bbcore::coreneuron_cpu_online
 45/304 Test #248: testcorenrn_bbcore::coreneuron_cpu_online ................................   Passed    0.51 sec
        Start 249: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 46/304 Test #249: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ...............   Passed    0.59 sec
        Start 250: testcorenrn_bbcore::coreneuron_cpu_offline
 47/304 Test #235: external_ringtest::neuron_mpi_python .....................................   Passed    8.96 sec
        Start 237: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
 48/304 Test #250: testcorenrn_bbcore::coreneuron_cpu_offline ...............................   Passed    0.30 sec
        Start 253: testcorenrn_conc::neuron
 49/304 Test #253: testcorenrn_conc::neuron .................................................   Passed    0.28 sec
        Start 254: testcorenrn_conc::coreneuron_cpu_online
 50/304 Test #254: testcorenrn_conc::coreneuron_cpu_online ..................................   Passed    0.53 sec
        Start 255: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 51/304 Test #255: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate .................   Passed    0.57 sec
        Start 256: testcorenrn_conc::coreneuron_cpu_offline
 52/304 Test #256: testcorenrn_conc::coreneuron_cpu_offline .................................   Passed    0.18 sec
        Start 259: testcorenrn_deriv::neuron
 53/304 Test #259: testcorenrn_deriv::neuron ................................................   Passed    0.25 sec
        Start 260: testcorenrn_deriv::coreneuron_cpu_online
 54/304 Test #237: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................   Passed    2.07 sec
        Start 238: external_ringtest::coreneuron_cpu_mpi
 55/304 Test #260: testcorenrn_deriv::coreneuron_cpu_online .................................   Passed    0.53 sec
        Start 261: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 56/304 Test #261: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................   Passed    0.56 sec
        Start 262: testcorenrn_deriv::coreneuron_cpu_offline
 57/304 Test #262: testcorenrn_deriv::coreneuron_cpu_offline ................................   Passed    0.18 sec
        Start 271: testcorenrn_kin::neuron
 58/304 Test #238: external_ringtest::coreneuron_cpu_mpi ....................................   Passed    1.35 sec
        Start 239: external_ringtest::coreneuron_cpu_mpi_python
 59/304 Test #271: testcorenrn_kin::neuron ..................................................   Passed    0.25 sec
        Start 272: testcorenrn_kin::coreneuron_cpu_online
 60/304 Test #272: testcorenrn_kin::coreneuron_cpu_online ...................................   Passed    0.76 sec
        Start 273: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 61/304 Test #273: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ..................   Passed    0.53 sec
        Start 274: testcorenrn_kin::coreneuron_cpu_offline
 62/304 Test #274: testcorenrn_kin::coreneuron_cpu_offline ..................................   Passed    0.18 sec
        Start   1: cmd_interface_test
 63/304 Test #239: external_ringtest::coreneuron_cpu_mpi_python .............................   Passed    1.65 sec
        Start 240: external_ringtest::coreneuron_cpu_mpi_offline
 64/304 Test   #1: cmd_interface_test .......................................................   Passed    0.41 sec
        Start   2: interleave_info_constructor_test
 65/304 Test   #2: interleave_info_constructor_test .........................................   Passed    0.22 sec
        Start   3: alignment_test
 66/304 Test   #3: alignment_test ...........................................................   Passed    0.23 sec
        Start   4: queuing_test
 67/304 Test #240: external_ringtest::coreneuron_cpu_mpi_offline ............................   Passed    0.82 sec
        Start 244: external_ringtest::coreneuron_mpi_registermapping_directmode
 68/304 Test   #4: queuing_test .............................................................   Passed    0.23 sec
        Start   5: test-solver
 69/304 Test   #5: test-solver ..............................................................   Passed    0.40 sec
        Start   6: random_test
 70/304 Test   #6: random_test ..............................................................   Passed    0.25 sec
        Start   7: lfp_test
 71/304 Test   #7: lfp_test .................................................................   Passed    0.29 sec
        Start   8: unit_tests::testneuron
 72/304 Test   #8: unit_tests::testneuron ...................................................   Passed    0.28 sec
        Start   9: unit_tests::testneuron_soa_erase_calls_terminate
 73/304 Test   #9: unit_tests::testneuron_soa_erase_calls_terminate .........................   Passed    0.10 sec
        Start  10: ringtest
 74/304 Test #244: external_ringtest::coreneuron_mpi_registermapping_directmode .............   Passed    1.63 sec
        Start 245: external_ringtest::coreneuron_mpi_registermapping_filemode
 75/304 Test  #10: ringtest .................................................................   Passed    0.86 sec
        Start  11: connect_dend
 76/304 Test  #11: connect_dend .............................................................   Passed    0.17 sec
        Start  12: mpi_init::nrniv_mpiopt
 77/304 Test  #12: mpi_init::nrniv_mpiopt ...................................................   Passed    0.18 sec
        Start  13: mpi_init::nrniv_nrnmpi_init
 78/304 Test  #13: mpi_init::nrniv_nrnmpi_init ..............................................   Passed    0.17 sec
        Start  14: mpi_init::python_nrnmpi_init
 79/304 Test #245: external_ringtest::coreneuron_mpi_registermapping_filemode ...............   Passed    1.78 sec
        Start 265: testcorenrn_gf::neuron
 80/304 Test  #14: mpi_init::python_nrnmpi_init .............................................   Passed    0.60 sec
        Start  15: mpi_init::python_mpienv
 81/304 Test  #15: mpi_init::python_mpienv ..................................................   Passed    0.62 sec
        Start  16: mpi_init::nrniv_mpiexec_mpiopt
 82/304 Test  #16: mpi_init::nrniv_mpiexec_mpiopt ...........................................   Passed    0.18 sec
        Start  17: mpi_init::nrniv_mpiexec_nrnmpi_init
 83/304 Test  #17: mpi_init::nrniv_mpiexec_nrnmpi_init ......................................   Passed    0.23 sec
        Start  18: mpi_init::python_mpiexec_nrnmpi_init
 84/304 Test  #18: mpi_init::python_mpiexec_nrnmpi_init .....................................   Passed    0.66 sec
        Start  19: mpi_init::python_mpiexec_mpienv
 85/304 Test #265: testcorenrn_gf::neuron ...................................................   Passed    2.45 sec
        Start 266: testcorenrn_gf::coreneuron_cpu_online
 86/304 Test  #19: mpi_init::python_mpiexec_mpienv ..........................................   Passed    0.67 sec
        Start  20: unit_tests::python_unit_tests
 87/304 Test #266: testcorenrn_gf::coreneuron_cpu_online ....................................   Passed    0.80 sec
        Start 267: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 88/304 Test  #20: unit_tests::python_unit_tests ............................................***Failed    2.59 sec
============================= test session starts ==============================
platform darwin -- Python 3.10.13, pytest-8.1.1, pluggy-1.5.0
rootdir: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn
plugins: cov-5.0.0, anyio-4.4.0
collected 13 items

../../../../test/unit_tests/hoc_python/test_StringFunctions.py ......... [ 69%]
NEURON: String is not a HOC template
 near line 0
 double x[2]
            ^
        StringFunctions[0].alias_list(...)
.NULLobject has 0 references
Vector[1] has 9 references
   hoc_obj_[0]
   o
   Foo[0].o
   Foo[0].o2[0]
   List[11].object(0)
  found 1 of them
.Fatal Python error: Segmentation fault

Current thread 0x00000001004c8580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/test/unit_tests/hoc_python/test_StringFunctions.py", line 174 in test_is_point_process
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86080==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010d621824 bp 0x00016f9bea40 sp 0x00016f9bea20 T0)
==86080==The signal is caused by a UNKNOWN memory access.
==86080==Hint: address points to the zero page.
    #0 0x10d621824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x10dcf1080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x10dcefbe0 in loc_point_process(int, void*) point.cpp:211
    #3 0x10dcef778 in create_point_process(int, Object*) point.cpp:41
    #4 0x10de23980 in _hoc_create_pnt(Object*) stim.cpp:93
    #5 0x10dda27cc in decltype(static_cast<void* (*&>(fp)(static_cast<Object*&>(fp0))) std::__1::__invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) type_traits:3918
    #6 0x10dda26b0 in std::__1::invoke_result<void* (*&)(Object*), Object*&>::type std::__1::invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) invoke.h:93
    #7 0x10dda24a0 in decltype(auto) neuron::oc::invoke_method_that_may_throw<call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&>(call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&) oc_ansi.h:78
    #8 0x10dd99bf0 in call_constructor(Object*, Symbol*, int) hoc_oop.cpp:622
    #9 0x10dd99058 in hoc_newobj1(Symbol*, int) hoc_oop.cpp:504
    #10 0x10d5fe100 in fcall(void*, void*) nrnpy_hoc.cpp:722
    #11 0x10dbe5250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #12 0x10d5fbe78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #13 0x10182a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #14 0x101924cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #15 0x101922468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #16 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x101922608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #18 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #19 0x101922608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #20 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #21 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #22 0x101922440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #23 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #24 0x10182d8a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #25 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #26 0x101922440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #27 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #28 0x10182a914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #29 0x10189f604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #30 0x10182a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #31 0x101924cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #32 0x1019224f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #33 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #34 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #35 0x1019223c8 in _PyEval_EvalFrameDefault+0xa7e4 (Python:arm64+0x15e3c8)
    #36 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #37 0x101922608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #38 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #39 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #40 0x101922440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #41 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #42 0x10182d8a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #43 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #44 0x101922440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #45 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #46 0x10182a914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #47 0x10189f604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #48 0x10182b05c in _PyObject_Call+0x7c (Python:arm64+0x6705c)
    #49 0x101922608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #50 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #51 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #52 0x101922468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #53 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #54 0x10182d8a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #55 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #56 0x1019224f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #57 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #58 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #59 0x101922468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #60 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #61 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #62 0x1019224f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #63 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #64 0x101922608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #65 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #66 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #67 0x101922440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #68 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #69 0x10182d8a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #70 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #71 0x101922440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #72 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #73 0x10182a914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #74 0x10189f604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #75 0x10182a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #76 0x101924cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #77 0x1019224f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #78 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #79 0x101922608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #80 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #81 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #82 0x101922440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #83 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #84 0x10182d8a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #85 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #86 0x101922440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #87 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #88 0x10182a914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #89 0x10189f604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #90 0x10182a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #91 0x101924cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #92 0x1019224f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #93 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #94 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #95 0x101922468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #96 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #97 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #98 0x101922468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #99 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #100 0x101922608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #101 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #102 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #103 0x101922440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #104 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #105 0x10182d8a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #106 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #107 0x101922440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #108 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #109 0x10182a914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #110 0x10189f604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #111 0x10182a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #112 0x101924cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #113 0x1019224f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #114 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #115 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #116 0x101922468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #117 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #118 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #119 0x101922440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #120 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #121 0x101916800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #122 0x101911690 in builtin_exec+0x178 (Python:arm64+0x14d690)
    #123 0x10187c7a4 in cfunction_vectorcall_FASTCALL+0x54 (Python:arm64+0xb87a4)
    #124 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #125 0x101922468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #126 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #127 0x101924c28 in call_function+0x7c (Python:arm64+0x160c28)
    #128 0x101922468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #129 0x10191698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #130 0x101993fcc in pymain_run_module+0xcc (Python:arm64+0x1cffcc)
    #131 0x101993b68 in Py_RunMain+0x3d0 (Python:arm64+0x1cfb68)
    #132 0x101994efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #133 0x100455088 in start+0x204 (dyld:arm64e+0x5088)

==86080==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x000000010bb0ff90   x[2] = 0x0000000102864e20   x[3] = 0x0000000103747878
 x[4] = 0x0000000000000000   x[5] = 0x0000000000000001   x[6] = 0x000000016e9cc000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x00000000251e0f43  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x000000000000717d  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x00000001009c0720  x[18] = 0x0000000000000000  x[19] = 0x0000000102864e20
x[20] = 0x0000000102864e40  x[21] = 0x0000000128f07a10  x[22] = 0x0000007000020000  x[23] = 0x0000000102864e20
x[24] = 0x0000000102864e40  x[25] = 0x0000007000020000  x[26] = 0x0000000102864e00  x[27] = 0x000000702052c9c0
x[28] = 0x00000001028dab00     fp = 0x000000016f9bea40     lr = 0x000000010d6217f0     sp = 0x000000016f9bea20
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86080==ABORTING
Fatal Python error: Aborted

Current thread 0x00000001004c8580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/test/unit_tests/hoc_python/test_StringFunctions.py", line 174 in test_is_point_process
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
Subprocess aborted

        Start  21: pytest::basic_tests_py3.10
 89/304 Test #267: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ...................   Passed    1.85 sec
        Start 268: testcorenrn_gf::coreneuron_cpu_offline
 90/304 Test #268: testcorenrn_gf::coreneuron_cpu_offline ...................................   Passed    0.31 sec
        Start 277: testcorenrn_patstim::neuron
 91/304 Test #277: testcorenrn_patstim::neuron ..............................................   Passed    0.47 sec
        Start 278: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
 92/304 Test  #21: pytest::basic_tests_py3.10 ...............................................***Failed    1.31 sec
============================= test session starts ==============================
platform darwin -- Python 3.10.13, pytest-8.1.1, pluggy-1.5.0
rootdir: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn
plugins: cov-5.0.0, anyio-4.4.0
collected 2 items

test/pytest/test_nrntest_thread.py Fatal Python error: Segmentation fault

Current thread 0x00000001027c0580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py", line 40 in __init__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py", line 69 in <listcomp>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py", line 69 in test_mcna
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86120==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010e521824 bp 0x00016d8ee100 sp 0x00016d8ee0e0 T0)
==86120==The signal is caused by a UNKNOWN memory access.
==86120==Hint: address points to the zero page.
    #0 0x10e521824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x10ebf1080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x10ebefbe0 in loc_point_process(int, void*) point.cpp:211
    #3 0x10ebef778 in create_point_process(int, Object*) point.cpp:41
    #4 0x10ed2be04 in _hoc_create_pnt(Object*) svclmp.cpp:113
    #5 0x10eca27cc in decltype(static_cast<void* (*&>(fp)(static_cast<Object*&>(fp0))) std::__1::__invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) type_traits:3918
    #6 0x10eca26b0 in std::__1::invoke_result<void* (*&)(Object*), Object*&>::type std::__1::invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) invoke.h:93
    #7 0x10eca24a0 in decltype(auto) neuron::oc::invoke_method_that_may_throw<call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&>(call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&) oc_ansi.h:78
    #8 0x10ec99bf0 in call_constructor(Object*, Symbol*, int) hoc_oop.cpp:622
    #9 0x10ec99058 in hoc_newobj1(Symbol*, int) hoc_oop.cpp:504
    #10 0x10e4fe100 in fcall(void*, void*) nrnpy_hoc.cpp:722
    #11 0x10eae5250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #12 0x10e4fbe78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #13 0x103a2263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #14 0x103b1ccb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #15 0x103b1a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #16 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x103a228a4 in _PyObject_FastCallDictTstate+0x5c (Python:arm64+0x668a4)
    #18 0x103a98964 in slot_tp_init+0xc0 (Python:arm64+0xdc964)
    #19 0x103a90920 in type_call+0x11c (Python:arm64+0xd4920)
    #20 0x103a2263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #21 0x103b1ccb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #22 0x103b1a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #23 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #24 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #25 0x103b1a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #26 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #27 0x103a22e84 in PyVectorcall_Call+0xb4 (Python:arm64+0x66e84)
    #28 0x103b1a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #29 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #30 0x103b1a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #31 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #32 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #33 0x103b1a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #34 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #35 0x103a258a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #36 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #37 0x103b1a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #38 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #39 0x103a22914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #40 0x103a97604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #41 0x103a2263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #42 0x103b1ccb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #43 0x103b1a4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #44 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #45 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #46 0x103b1a3c8 in _PyEval_EvalFrameDefault+0xa7e4 (Python:arm64+0x15e3c8)
    #47 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #48 0x103b1a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #49 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #50 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #51 0x103b1a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #52 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #53 0x103a258a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #54 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #55 0x103b1a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #56 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #57 0x103a22914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #58 0x103a97604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #59 0x103a2305c in _PyObject_Call+0x7c (Python:arm64+0x6705c)
    #60 0x103b1a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #61 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #62 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #63 0x103b1a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #64 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #65 0x103a258a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #66 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #67 0x103b1a4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #68 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #69 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #70 0x103b1a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #71 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #72 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #73 0x103b1a4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #74 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #75 0x103b1a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #76 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #77 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #78 0x103b1a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #79 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #80 0x103a258a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #81 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #82 0x103b1a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #83 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #84 0x103a22914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #85 0x103a97604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #86 0x103a2263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #87 0x103b1ccb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #88 0x103b1a4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #89 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #90 0x103b1a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #91 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #92 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #93 0x103b1a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #94 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #95 0x103a258a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #96 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #97 0x103b1a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #98 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #99 0x103a22914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #100 0x103a97604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #101 0x103a2263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #102 0x103b1ccb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #103 0x103b1a4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #104 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #105 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #106 0x103b1a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #107 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #108 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #109 0x103b1a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #110 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #111 0x103b1a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #112 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #113 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #114 0x103b1a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #115 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #116 0x103a258a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #117 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #118 0x103b1a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #119 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #120 0x103a22914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #121 0x103a97604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #122 0x103a2263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #123 0x103b1ccb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #124 0x103b1a4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #125 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #126 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #127 0x103b1a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #128 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #129 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #130 0x103b1a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #131 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #132 0x103b0e800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #133 0x103b09690 in builtin_exec+0x178 (Python:arm64+0x14d690)
    #134 0x103a747a4 in cfunction_vectorcall_FASTCALL+0x54 (Python:arm64+0xb87a4)
    #135 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #136 0x103b1a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #137 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #138 0x103b1cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #139 0x103b1a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #140 0x103b0e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #141 0x103b8bfcc in pymain_run_module+0xcc (Python:arm64+0x1cffcc)
    #142 0x103b8bb68 in Py_RunMain+0x3d0 (Python:arm64+0x1cfb68)
    #143 0x103b8cefc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #144 0x10274d088 in start+0x204 (dyld:arm64e+0x5088)

==86120==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x000000010bdffa90   x[2] = 0x0000000104a50c20   x[3] = 0x0000000105823c98
 x[4] = 0x0000000000000000   x[5] = 0x0000000000000001   x[6] = 0x000000016c8fc000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x0000000025418433  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x0000000000000ff9  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000102bb8720  x[18] = 0x0000000000000000  x[19] = 0x0000000104a50c20
x[20] = 0x0000000104a50c40  x[21] = 0x000000012a0c2190  x[22] = 0x0000007000020000  x[23] = 0x0000000104a50c20
x[24] = 0x0000000104a50c40  x[25] = 0x0000007000020000  x[26] = 0x0000000104a50c00  x[27] = 0x000000702096a180
x[28] = 0x0000000104b22500     fp = 0x000000016d8ee100     lr = 0x000000010e5217f0     sp = 0x000000016d8ee0e0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86120==ABORTING
Fatal Python error: Aborted

Current thread 0x00000001027c0580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py", line 40 in __init__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py", line 69 in <listcomp>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py", line 69 in test_mcna
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
Subprocess aborted

        Start  22: pytest_coreneuron::basic_tests_py3.10
 93/304 Test #278: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ..................   Passed    0.63 sec
        Start 279: testcorenrn_patstim::coreneuron_cpu_offline
 94/304 Test #279: testcorenrn_patstim::coreneuron_cpu_offline ..............................   Passed    0.20 sec
        Start 282: testcorenrn_vecplay::neuron
 95/304 Test #282: testcorenrn_vecplay::neuron ..............................................   Passed    0.46 sec
        Start 283: testcorenrn_vecplay::coreneuron_cpu_online
 96/304 Test #283: testcorenrn_vecplay::coreneuron_cpu_online ...............................   Passed    0.58 sec
        Start 284: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 97/304 Test  #22: pytest_coreneuron::basic_tests_py3.10 ....................................***Failed    1.76 sec
============================= test session starts ==============================
platform darwin -- Python 3.10.13, pytest-8.1.1, pluggy-1.5.0
rootdir: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn
plugins: cov-5.0.0, anyio-4.4.0
collected 93 items

test/pytest_coreneuron/test_a_neuronoptions.py -nogui -NSTACK 3000 -NFRAME 525
NEURON -nogui -NSTACK 3000 -NFRAME 525 -dll arm64/.libs/libnrnmech.so
.                         [  1%]
test/pytest_coreneuron/test_basic.py .Fatal Python error: Segmentation fault

Thread 0x000000016e3f3000 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui.py", line 107 in run
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/threading.py", line 1016 in _bootstrap_inner
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/threading.py", line 973 in _bootstrap

Current thread 0x0000000103014580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py", line 36 in test_simple_sim
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86179==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010ed21824 bp 0x00016d00a9e0 sp 0x00016d00a9c0 T0)
==86179==The signal is caused by a UNKNOWN memory access.
==86179==Hint: address points to the zero page.
    #0 0x10ed21824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x10f3f1080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x10f3efbe0 in loc_point_process(int, void*) point.cpp:211
    #3 0x10f3ef778 in create_point_process(int, Object*) point.cpp:41
    #4 0x10f523980 in _hoc_create_pnt(Object*) stim.cpp:93
    #5 0x10f4a27cc in decltype(static_cast<void* (*&>(fp)(static_cast<Object*&>(fp0))) std::__1::__invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) type_traits:3918
    #6 0x10f4a26b0 in std::__1::invoke_result<void* (*&)(Object*), Object*&>::type std::__1::invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) invoke.h:93
    #7 0x10f4a24a0 in decltype(auto) neuron::oc::invoke_method_that_may_throw<call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&>(call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&) oc_ansi.h:78
    #8 0x10f499bf0 in call_constructor(Object*, Symbol*, int) hoc_oop.cpp:622
    #9 0x10f499058 in hoc_newobj1(Symbol*, int) hoc_oop.cpp:504
    #10 0x10ecfe100 in fcall(void*, void*) nrnpy_hoc.cpp:722
    #11 0x10f2e5250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #12 0x10ecfbe78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #13 0x10427663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #14 0x104370cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #15 0x10436e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #16 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x10436e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #18 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #19 0x10436e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #20 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #21 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #22 0x10436e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #23 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #24 0x1042798a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #25 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #26 0x10436e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #27 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #28 0x104276914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #29 0x1042eb604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #30 0x10427663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #31 0x104370cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #32 0x10436e4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #33 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #34 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #35 0x10436e3c8 in _PyEval_EvalFrameDefault+0xa7e4 (Python:arm64+0x15e3c8)
    #36 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #37 0x10436e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #38 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #39 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #40 0x10436e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #41 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #42 0x1042798a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #43 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #44 0x10436e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #45 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #46 0x104276914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #47 0x1042eb604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #48 0x10427705c in _PyObject_Call+0x7c (Python:arm64+0x6705c)
    #49 0x10436e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #50 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #51 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #52 0x10436e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #53 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #54 0x1042798a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #55 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #56 0x10436e4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #57 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #58 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #59 0x10436e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #60 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #61 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #62 0x10436e4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #63 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #64 0x10436e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #65 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #66 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #67 0x10436e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #68 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #69 0x1042798a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #70 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #71 0x10436e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #72 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #73 0x104276914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #74 0x1042eb604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #75 0x10427663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #76 0x104370cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #77 0x10436e4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #78 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #79 0x10436e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #80 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #81 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #82 0x10436e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #83 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #84 0x1042798a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #85 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #86 0x10436e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #87 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #88 0x104276914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #89 0x1042eb604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #90 0x10427663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #91 0x104370cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #92 0x10436e4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #93 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #94 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #95 0x10436e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #96 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #97 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #98 0x10436e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #99 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #100 0x10436e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #101 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #102 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #103 0x10436e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #104 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #105 0x1042798a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #106 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #107 0x10436e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #108 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #109 0x104276914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #110 0x1042eb604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #111 0x10427663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #112 0x104370cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #113 0x10436e4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #114 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #115 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #116 0x10436e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #117 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #118 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #119 0x10436e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #120 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #121 0x104362800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #122 0x10435d690 in builtin_exec+0x178 (Python:arm64+0x14d690)
    #123 0x1042c87a4 in cfunction_vectorcall_FASTCALL+0x54 (Python:arm64+0xb87a4)
    #124 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #125 0x10436e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #126 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #127 0x104370c28 in call_function+0x7c (Python:arm64+0x160c28)
    #128 0x10436e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #129 0x10436298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #130 0x1043dffcc in pymain_run_module+0xcc (Python:arm64+0x1cffcc)
    #131 0x1043dfb68 in Py_RunMain+0x3d0 (Python:arm64+0x1cfb68)
    #132 0x1043e0efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #133 0x102fa1088 in start+0x204 (dyld:arm64e+0x5088)

==86179==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x000000010d10cd90   x[2] = 0x0000000105283420   x[3] = 0x000000012e004bb8
 x[4] = 0x0000000000000000   x[5] = 0x0000000000000001   x[6] = 0x000000016c018000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x000000002177ec97  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x0000000000038bc9  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x000000010340c720  x[18] = 0x0000000000000000  x[19] = 0x0000000105283420
x[20] = 0x0000000105283440  x[21] = 0x000000010bbf64b0  x[22] = 0x0000007000020000  x[23] = 0x0000000105283420
x[24] = 0x0000000105283440  x[25] = 0x0000007000020000  x[26] = 0x0000000105283400  x[27] = 0x0000007020a70680
x[28] = 0x0000000105416a00     fp = 0x000000016d00a9e0     lr = 0x000000010ed217f0     sp = 0x000000016d00a9c0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86179==ABORTING
Fatal Python error: Aborted

Thread 0x000000016e3f3000 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui.py", line 107 in run
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/threading.py", line 1016 in _bootstrap_inner
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/threading.py", line 973 in _bootstrap

Current thread 0x0000000103014580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py", line 36 in test_simple_sim
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
Subprocess aborted

        Start  23: datahandle::datahandle_tests
 98/304 Test #284: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ..............   Passed    0.65 sec
        Start 285: testcorenrn_vecplay::coreneuron_cpu_offline
 99/304 Test #285: testcorenrn_vecplay::coreneuron_cpu_offline ..............................   Passed    0.19 sec
        Start 294: testcorenrn_watch::neuron
100/304 Test #294: testcorenrn_watch::neuron ................................................   Passed    0.51 sec
        Start 295: testcorenrn_watch::coreneuron_cpu_online
101/304 Test  #23: datahandle::datahandle_tests .............................................***Failed    1.34 sec
============================= test session starts ==============================
platform darwin -- Python 3.10.13, pytest-8.1.1, pluggy-1.5.0
rootdir: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn
plugins: cov-5.0.0, anyio-4.4.0
collected 8 items

test/datahandle/test_1.py Fatal Python error: Segmentation fault

Current thread 0x00000001026e0580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/datahandle/datahandle_tests/test/datahandle/test_1.py", line 20 in cmp
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/datahandle/datahandle_tests/test/datahandle/test_1.py", line 27 in test_1
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86249==ERROR: AddressSanitizer: SEGV on unknown address 0x00013b814208 (pc 0x00010e235004 bp 0x00016db02c10 sp 0x00016db02b60 T0)
==86249==The signal is caused by a UNKNOWN memory access.
    #0 0x10e235004 in segment_getattro(NPySegObj*, _object*) nrnpy_nrn.cpp:2185
    #1 0x10e234a0c in nrn::convert_cxx_exceptions_trait<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>::return_type nrn::convert_cxx_exceptions<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>(_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&) convert_cxx_exceptions.hpp:45
    #2 0x10e233d20 in segment_getattro_safe(NPySegObj*, _object*) nrnpy_nrn.cpp:2298
    #3 0x103a3687c in _PyEval_EvalFrameDefault+0x6c98 (Python:arm64+0x15a87c)
    #4 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #5 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #6 0x103a3a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #7 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #8 0x103a3a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #9 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #10 0x103a3a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #11 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #12 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #13 0x103a3a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #14 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #15 0x1039458a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #16 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #17 0x103a3a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #18 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #19 0x103942914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #20 0x1039b7604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #21 0x10394263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #22 0x103a3ccb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #23 0x103a3a4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #24 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #25 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #26 0x103a3a3c8 in _PyEval_EvalFrameDefault+0xa7e4 (Python:arm64+0x15e3c8)
    #27 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #28 0x103a3a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #29 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #30 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #31 0x103a3a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #32 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #33 0x1039458a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #34 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #35 0x103a3a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #36 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #37 0x103942914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #38 0x1039b7604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #39 0x10394305c in _PyObject_Call+0x7c (Python:arm64+0x6705c)
    #40 0x103a3a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #41 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #42 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #43 0x103a3a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #44 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #45 0x1039458a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #46 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #47 0x103a3a4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #48 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #49 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #50 0x103a3a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #51 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #52 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #53 0x103a3a4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #54 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #55 0x103a3a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #56 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #57 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #58 0x103a3a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #59 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #60 0x1039458a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #61 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #62 0x103a3a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #63 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #64 0x103942914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #65 0x1039b7604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #66 0x10394263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #67 0x103a3ccb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #68 0x103a3a4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #69 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #70 0x103a3a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #71 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #72 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #73 0x103a3a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #74 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #75 0x1039458a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #76 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #77 0x103a3a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #78 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #79 0x103942914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #80 0x1039b7604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #81 0x10394263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #82 0x103a3ccb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #83 0x103a3a4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #84 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #85 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #86 0x103a3a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #87 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #88 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #89 0x103a3a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #90 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #91 0x103a3a608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #92 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #93 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #94 0x103a3a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #95 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #96 0x1039458a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #97 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #98 0x103a3a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #99 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #100 0x103942914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #101 0x1039b7604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #102 0x10394263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #103 0x103a3ccb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #104 0x103a3a4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #105 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #106 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #107 0x103a3a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #108 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #109 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #110 0x103a3a440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #111 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #112 0x103a2e800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #113 0x103a29690 in builtin_exec+0x178 (Python:arm64+0x14d690)
    #114 0x1039947a4 in cfunction_vectorcall_FASTCALL+0x54 (Python:arm64+0xb87a4)
    #115 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #116 0x103a3a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #117 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #118 0x103a3cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #119 0x103a3a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #120 0x103a2e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #121 0x103aabfcc in pymain_run_module+0xcc (Python:arm64+0x1cffcc)
    #122 0x103aabb68 in Py_RunMain+0x3d0 (Python:arm64+0x1cfb68)
    #123 0x103aacefc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #124 0x10266d088 in start+0x204 (dyld:arm64e+0x5088)

==86249==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x00000001037349b0   x[2] = 0x0000000000000000   x[3] = 0x000000010b0f6910
 x[4] = 0x000000016db027f8   x[5] = 0x000000016db02878   x[6] = 0x0000000000000100   x[7] = 0x000000016db02760
 x[8] = 0x0000000000000000   x[9] = 0xf8f8f8f8f2f8f2f2  x[10] = 0x000000700001ffff  x[11] = 0x0000000000300000
x[12] = 0x0000000000000306  x[13] = 0x0000000000000307  x[14] = 0x0000000000000000  x[15] = 0x0000000000000004
x[16] = 0x00000001b58130fc  x[17] = 0x0000000102ad8720  x[18] = 0x0000000000000000  x[19] = 0x000000016db02b60
x[20] = 0x0000000104b51c00  x[21] = 0x000000702098a380  x[22] = 0x0000007000020000  x[23] = 0x0000000104b51c00
x[24] = 0x0000000104969500  x[25] = 0x000000010b0f68f0  x[26] = 0x0000000106402d40  x[27] = 0x000000010b433680
x[28] = 0x0000000128db9f70     fp = 0x000000016db02c10     lr = 0x000000010e234f58     sp = 0x000000016db02b60
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp:2185 in segment_getattro(NPySegObj*, _object*)
==86249==ABORTING
Fatal Python error: Aborted

Current thread 0x00000001026e0580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/datahandle/datahandle_tests/test/datahandle/test_1.py", line 20 in cmp
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/datahandle/datahandle_tests/test/datahandle/test_1.py", line 27 in test_1
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
Subprocess aborted

        Start  24: coverage_tests::cover_tests
102/304 Test #295: testcorenrn_watch::coreneuron_cpu_online .................................   Passed    0.55 sec
        Start 296: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
103/304 Test #296: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................   Passed    0.92 sec
        Start 297: testcorenrn_watch::coreneuron_cpu_offline
104/304 Test #297: testcorenrn_watch::coreneuron_cpu_offline ................................   Passed    0.22 sec
        Start 300: testcorenrn_netstimdirect::direct_netstimdirect
105/304 Test  #24: coverage_tests::cover_tests ..............................................***Failed    1.35 sec
============================= test session starts ==============================
platform darwin -- Python 3.10.13, pytest-8.1.1, pluggy-1.5.0
rootdir: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn
plugins: cov-5.0.0, anyio-4.4.0
collected 1 item

test/cover/test_netcvode.py Fatal Python error: Segmentation fault

Current thread 0x00000001040f4580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/coverage_tests/cover_tests/test/cover/test_netcvode.py", line 63 in node
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/coverage_tests/cover_tests/test/cover/test_netcvode.py", line 767 in test_netcvode_cover
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86299==ERROR: AddressSanitizer: SEGV on unknown address 0x00012b090958 (pc 0x000110721824 bp 0x00016bdca660 sp 0x00016bdca640 T0)
==86299==The signal is caused by a UNKNOWN memory access.
    #0 0x110721824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x110df1080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x110defbe0 in loc_point_process(int, void*) point.cpp:211
    #3 0x110def778 in create_point_process(int, Object*) point.cpp:41
    #4 0x110f23980 in _hoc_create_pnt(Object*) stim.cpp:93
    #5 0x110ea27cc in decltype(static_cast<void* (*&>(fp)(static_cast<Object*&>(fp0))) std::__1::__invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) type_traits:3918
    #6 0x110ea26b0 in std::__1::invoke_result<void* (*&)(Object*), Object*&>::type std::__1::invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) invoke.h:93
    #7 0x110ea24a0 in decltype(auto) neuron::oc::invoke_method_that_may_throw<call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&>(call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&) oc_ansi.h:78
    #8 0x110e99bf0 in call_constructor(Object*, Symbol*, int) hoc_oop.cpp:622
    #9 0x110e99058 in hoc_newobj1(Symbol*, int) hoc_oop.cpp:504
    #10 0x1106fe100 in fcall(void*, void*) nrnpy_hoc.cpp:722
    #11 0x110ce5250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #12 0x1106fbe78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #13 0x10545663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #14 0x105550cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #15 0x10554e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #16 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #18 0x10554e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #19 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #20 0x10554e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #21 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #22 0x10554e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #23 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #24 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #25 0x10554e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #26 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #27 0x1054598a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #28 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #29 0x10554e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #30 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #31 0x105456914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #32 0x1054cb604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #33 0x10545663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #34 0x105550cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #35 0x10554e4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #36 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #37 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #38 0x10554e3c8 in _PyEval_EvalFrameDefault+0xa7e4 (Python:arm64+0x15e3c8)
    #39 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #40 0x10554e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #41 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #42 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #43 0x10554e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #44 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #45 0x1054598a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #46 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #47 0x10554e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #48 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #49 0x105456914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #50 0x1054cb604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #51 0x10545705c in _PyObject_Call+0x7c (Python:arm64+0x6705c)
    #52 0x10554e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #53 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #54 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #55 0x10554e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #56 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #57 0x1054598a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #58 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #59 0x10554e4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #60 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #61 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #62 0x10554e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #63 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #64 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #65 0x10554e4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #66 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #67 0x10554e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #68 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #69 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #70 0x10554e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #71 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #72 0x1054598a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #73 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #74 0x10554e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #75 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #76 0x105456914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #77 0x1054cb604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #78 0x10545663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #79 0x105550cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #80 0x10554e4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #81 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #82 0x10554e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #83 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #84 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #85 0x10554e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #86 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #87 0x1054598a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #88 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #89 0x10554e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #90 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #91 0x105456914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #92 0x1054cb604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #93 0x10545663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #94 0x105550cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #95 0x10554e4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #96 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #97 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #98 0x10554e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #99 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #100 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #101 0x10554e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #102 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #103 0x10554e608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #104 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #105 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #106 0x10554e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #107 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #108 0x1054598a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #109 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #110 0x10554e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #111 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #112 0x105456914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #113 0x1054cb604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #114 0x10545663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #115 0x105550cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #116 0x10554e4f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #117 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #118 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #119 0x10554e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #120 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #121 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #122 0x10554e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #123 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #124 0x105542800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #125 0x10553d690 in builtin_exec+0x178 (Python:arm64+0x14d690)
    #126 0x1054a87a4 in cfunction_vectorcall_FASTCALL+0x54 (Python:arm64+0xb87a4)
    #127 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #128 0x10554e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #129 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #130 0x105550c28 in call_function+0x7c (Python:arm64+0x160c28)
    #131 0x10554e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #132 0x10554298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #133 0x1055bffcc in pymain_run_module+0xcc (Python:arm64+0x1cffcc)
    #134 0x1055bfb68 in Py_RunMain+0x3d0 (Python:arm64+0x1cfb68)
    #135 0x1055c0efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #136 0x104081088 in start+0x204 (dyld:arm64e+0x5088)

==86299==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x000000010eb07d90   x[2] = 0x00000001064df720   x[3] = 0x00000001074237b8
 x[4] = 0x0000000000000000   x[5] = 0x0000000000000001   x[6] = 0x000000016add8000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x00000000219decff  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x0000000000001b4f  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x00000001045ec720  x[18] = 0x0000000000000000  x[19] = 0x00000001064df720
x[20] = 0x00000001064df740  x[21] = 0x000000010cef67f0  x[22] = 0x0000007000020000  x[23] = 0x00000001064df720
x[24] = 0x00000001064df740  x[25] = 0x0000007000020000  x[26] = 0x00000001064df700  x[27] = 0x0000007020cbbee0
x[28] = 0x000000010659a200     fp = 0x000000016bdca660     lr = 0x00000001107217f0     sp = 0x000000016bdca640
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86299==ABORTING
Fatal Python error: Aborted

Current thread 0x00000001040f4580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/coverage_tests/cover_tests/test/cover/test_netcvode.py", line 63 in node
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/coverage_tests/cover_tests/test/cover/test_netcvode.py", line 767 in test_netcvode_cover
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
Subprocess aborted

        Start  25: example_nmodl::ca_ap_hoc
106/304 Test  #25: example_nmodl::ca_ap_hoc .................................................   Passed    0.62 sec
        Start  26: example_nmodl::cabpump_hoc
107/304 Test #300: testcorenrn_netstimdirect::direct_netstimdirect ..........................   Passed    0.84 sec
        Start 301: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
108/304 Test  #26: example_nmodl::cabpump_hoc ...............................................   Passed    0.21 sec
        Start  27: example_nmodl::cachan_hoc
109/304 Test  #27: example_nmodl::cachan_hoc ................................................   Passed    0.15 sec
        Start  28: example_nmodl::cadif_hoc
110/304 Test  #28: example_nmodl::cadif_hoc .................................................   Passed    0.39 sec
        Start  29: example_nmodl::cadifusl_hoc
111/304 Test  #29: example_nmodl::cadifusl_hoc ..............................................   Passed    0.20 sec
        Start  30: example_nmodl::cadifusl1_hoc
112/304 Test #301: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate .........   Passed    0.89 sec
        Start  31: example_nmodl::cadifusl2_hoc
        Start  32: example_nmodl::cagk_hoc
113/304 Test  #30: example_nmodl::cadifusl1_hoc .............................................   Passed    0.22 sec
        Start  33: example_nmodl::capmp_hoc
114/304 Test  #32: example_nmodl::cagk_hoc ..................................................   Passed    0.14 sec
        Start  34: example_nmodl::cv_hoc
115/304 Test  #31: example_nmodl::cadifusl2_hoc .............................................   Passed    0.16 sec
        Start  35: example_nmodl::fh_hoc
116/304 Test  #34: example_nmodl::cv_hoc ....................................................   Passed    0.14 sec
        Start  36: example_nmodl::fit1_hoc
117/304 Test  #35: example_nmodl::fh_hoc ....................................................   Passed    0.14 sec
        Start  37: example_nmodl::gap_hoc
118/304 Test  #33: example_nmodl::capmp_hoc .................................................   Passed    0.26 sec
        Start  38: example_nmodl::hh1_hoc
119/304 Test  #36: example_nmodl::fit1_hoc ..................................................   Passed    0.14 sec
        Start  39: example_nmodl::hhvect_hoc
120/304 Test  #37: example_nmodl::gap_hoc ...................................................   Passed    0.15 sec
        Start  40: example_nmodl::nacum_hoc
121/304 Test  #38: example_nmodl::hh1_hoc ...................................................   Passed    0.15 sec
        Start  41: example_nmodl::nadifl1_hoc
122/304 Test  #39: example_nmodl::hhvect_hoc ................................................   Passed    0.15 sec
        Start  42: example_nmodl::nadifl2_hoc
123/304 Test  #40: example_nmodl::nacum_hoc .................................................   Passed    0.14 sec
        Start  43: example_nmodl::nadifl3_hoc
124/304 Test  #41: example_nmodl::nadifl1_hoc ...............................................   Passed    0.17 sec
        Start  44: example_nmodl::nadifl4_hoc
125/304 Test  #42: example_nmodl::nadifl2_hoc ...............................................   Passed    0.18 sec
        Start  45: example_nmodl::obj_ex_hoc
126/304 Test  #43: example_nmodl::nadifl3_hoc ...............................................   Passed    0.17 sec
        Start  46: example_nmodl::order_hoc
127/304 Test  #44: example_nmodl::nadifl4_hoc ...............................................   Passed    0.17 sec
        Start  47: example_nmodl::passiv_hoc
128/304 Test  #45: example_nmodl::obj_ex_hoc ................................................   Passed    0.14 sec
        Start  48: example_nmodl::stim1_hoc
129/304 Test  #46: example_nmodl::order_hoc .................................................   Passed    0.17 sec
        Start  49: example_nmodl::syn1_hoc
130/304 Test  #47: example_nmodl::passiv_hoc ................................................   Passed    0.14 sec
        Start  50: example_nmodl::synpre_hoc
131/304 Test  #48: example_nmodl::stim1_hoc .................................................   Passed    0.15 sec
        Start  51: example_nmodl::tstextrn_hoc
132/304 Test  #49: example_nmodl::syn1_hoc ..................................................   Passed    0.15 sec
        Start  52: example_nmodl::tstpnt1_hoc
133/304 Test  #50: example_nmodl::synpre_hoc ................................................   Passed    0.21 sec
        Start  53: example_nmodl::tstpnt2_hoc
134/304 Test  #51: example_nmodl::tstextrn_hoc ..............................................   Passed    0.14 sec
        Start  54: example_nmodl::tstvec_hoc
135/304 Test  #52: example_nmodl::tstpnt1_hoc ...............................................   Passed    0.14 sec
        Start  55: example_nmodl::cagkftab_py
136/304 Test  #53: example_nmodl::tstpnt2_hoc ...............................................   Passed    0.14 sec
        Start  56: example_nmodl::expsynspine_py
137/304 Test  #54: example_nmodl::tstvec_hoc ................................................   Passed    0.14 sec
        Start  57: example_nmodl::nonlin_py
138/304 Test  #56: example_nmodl::expsynspine_py ............................................***Failed    1.17 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86499==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010b139824 bp 0x00016d35dbc0 sp 0x00016d35dba0 T0)
==86499==The signal is caused by a UNKNOWN memory access.
==86499==Hint: address points to the zero page.
    #0 0x10b139824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x10b809080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x10b807be0 in loc_point_process(int, void*) point.cpp:211
    #3 0x10b807778 in create_point_process(int, Object*) point.cpp:41
    #4 0x109b8edbc in _hoc_create_pnt(Object*) expsynspine.cpp:111
    #5 0x10b8ba7cc in decltype(static_cast<void* (*&>(fp)(static_cast<Object*&>(fp0))) std::__1::__invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) type_traits:3918
    #6 0x10b8ba6b0 in std::__1::invoke_result<void* (*&)(Object*), Object*&>::type std::__1::invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) invoke.h:93
    #7 0x10b8ba4a0 in decltype(auto) neuron::oc::invoke_method_that_may_throw<call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&>(call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&) oc_ansi.h:78
    #8 0x10b8b1bf0 in call_constructor(Object*, Symbol*, int) hoc_oop.cpp:622
    #9 0x10b8b1058 in hoc_newobj1(Symbol*, int) hoc_oop.cpp:504
    #10 0x10b116100 in fcall(void*, void*) nrnpy_hoc.cpp:722
    #11 0x10b6fd250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #12 0x10b113e78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #13 0x103e8a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #14 0x103f84cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #15 0x103f82440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #16 0x103f7698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x103f76800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #18 0x103fd2898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #19 0x103fd27fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #20 0x103fd2490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #21 0x103fd1dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #22 0x103fd1408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #23 0x103ff4b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #24 0x103ff426c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #25 0x103ff3b74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #26 0x103ff4efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #27 0x102ab5088 in start+0x204 (dyld:arm64e+0x5088)

==86499==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x00000001066c3a90   x[2] = 0x0000000104e39620   x[3] = 0x0000000105d5c0f8
 x[4] = 0x0000000000000000   x[5] = 0x0000000000000001   x[6] = 0x000000016c364000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x00000000250c7227  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x000000000000a00d  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000103020720  x[18] = 0x0000000000000000  x[19] = 0x0000000104e39620
x[20] = 0x0000000104e39640  x[21] = 0x0000000128639130  x[22] = 0x0000007000020000  x[23] = 0x0000000104e39620
x[24] = 0x0000000104e39640  x[25] = 0x0000007000020000  x[26] = 0x0000000104e39600  x[27] = 0x00000070209e72c0
x[28] = 0x0000000104fea100     fp = 0x000000016d35dbc0     lr = 0x000000010b1397f0     sp = 0x000000016d35dba0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86499==ABORTING
Subprocess aborted

        Start  58: example_nmodl::tstpnt1_py
139/304 Test  #58: example_nmodl::tstpnt1_py ................................................***Failed    0.90 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86510==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x000108d39824 bp 0x00016f771bc0 sp 0x00016f771ba0 T0)
==86510==The signal is caused by a UNKNOWN memory access.
==86510==Hint: address points to the zero page.
    #0 0x108d39824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x109409080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x109407be0 in loc_point_process(int, void*) point.cpp:211
    #3 0x109407778 in create_point_process(int, Object*) point.cpp:41
    #4 0x107833fa0 in _hoc_create_pnt(Object*) tstpnt1.cpp:91
    #5 0x1094ba7cc in decltype(static_cast<void* (*&>(fp)(static_cast<Object*&>(fp0))) std::__1::__invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) type_traits:3918
    #6 0x1094ba6b0 in std::__1::invoke_result<void* (*&)(Object*), Object*&>::type std::__1::invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) invoke.h:93
    #7 0x1094ba4a0 in decltype(auto) neuron::oc::invoke_method_that_may_throw<call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&>(call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&) oc_ansi.h:78
    #8 0x1094b1bf0 in call_constructor(Object*, Symbol*, int) hoc_oop.cpp:622
    #9 0x1094b1058 in hoc_newobj1(Symbol*, int) hoc_oop.cpp:504
    #10 0x108d16100 in fcall(void*, void*) nrnpy_hoc.cpp:722
    #11 0x1092fd250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #12 0x108d13e78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #13 0x101bf663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #14 0x101cf0cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #15 0x101cee440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #16 0x101ce298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x101ce2800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #18 0x101d3e898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #19 0x101d3e7fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #20 0x101d3e490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #21 0x101d3ddc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #22 0x101d3d408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #23 0x101d60b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #24 0x101d6026c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #25 0x101d5fb74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #26 0x101d60efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #27 0x100921088 in start+0x204 (dyld:arm64e+0x5088)

==86510==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x00000001043c3f90   x[2] = 0x0000000102bc16a0   x[3] = 0x0000000103a2bd38
 x[4] = 0x0000000000000000   x[5] = 0x0000000000000001   x[6] = 0x000000016e778000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x0000000020ce3dbb  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x000000000000238e  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000100d8c720  x[18] = 0x0000000000000000  x[19] = 0x0000000102bc16a0
x[20] = 0x0000000102bc16c0  x[21] = 0x000000010671edd0  x[22] = 0x0000007000020000  x[23] = 0x0000000102bc16a0
x[24] = 0x0000000102bc16c0  x[25] = 0x0000007000020000  x[26] = 0x0000000102bc1680  x[27] = 0x00000070205982d0
x[28] = 0x0000000102d47700     fp = 0x000000016f771bc0     lr = 0x0000000108d397f0     sp = 0x000000016f771ba0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86510==ABORTING
Subprocess aborted

        Start  59: example_nmodl::tstpnt2_py
140/304 Test  #57: example_nmodl::nonlin_py .................................................   Passed    2.24 sec
        Start  60: example_nmodl::vlag_py
141/304 Test  #59: example_nmodl::tstpnt2_py ................................................***Failed    1.06 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86516==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x000108835004 bp 0x00016fc82150 sp 0x00016fc820a0 T0)
==86516==The signal is caused by a UNKNOWN memory access.
==86516==Hint: address points to the zero page.
    #0 0x108835004 in segment_getattro(NPySegObj*, _object*) nrnpy_nrn.cpp:2185
    #1 0x108834a0c in nrn::convert_cxx_exceptions_trait<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>::return_type nrn::convert_cxx_exceptions<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>(_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&) convert_cxx_exceptions.hpp:45
    #2 0x108833d20 in segment_getattro_safe(NPySegObj*, _object*) nrnpy_nrn.cpp:2298
    #3 0x10179687c in _PyEval_EvalFrameDefault+0x6c98 (Python:arm64+0x15a87c)
    #4 0x10178e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #5 0x10178e800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #6 0x1017ea898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #7 0x1017ea7fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #8 0x1017ea490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #9 0x1017e9dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #10 0x1017e9408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #11 0x10180cb20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #12 0x10180c26c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #13 0x10180bb74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #14 0x10180cefc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #15 0x1003cd088 in start+0x204 (dyld:arm64e+0x5088)

==86516==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x000000010510b9b0   x[2] = 0x00000001016fd1b0   x[3] = 0x000000010267fe30
 x[4] = 0x000000016fc81d38   x[5] = 0x000000016fc81db8   x[6] = 0x0000000000000001   x[7] = 0x000000016fc81ca0
 x[8] = 0x0000000000000000   x[9] = 0xf8f8f8f8f2f8f2f2  x[10] = 0x000000700001ffff  x[11] = 0x0000000000300000
x[12] = 0x0000000000000066  x[13] = 0x0000000000000867  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000100838720  x[18] = 0x0000000000000000  x[19] = 0x000000016fc820a0
x[20] = 0x000000010285dc00  x[21] = 0x000000702052bb80  x[22] = 0x0000007000020000  x[23] = 0x000000010285dc00
x[24] = 0x000000010267fe80  x[25] = 0x0000000125d35010  x[26] = 0x0000000104102d40  x[27] = 0x00000001051c7310
x[28] = 0x0000000101529fb8     fp = 0x000000016fc82150     lr = 0x0000000108834f58     sp = 0x000000016fc820a0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp:2185 in segment_getattro(NPySegObj*, _object*)
==86516==ABORTING
Subprocess aborted

        Start  61: hoctests::test_loadbal_hoc
142/304 Test  #60: example_nmodl::vlag_py ...................................................***Failed    1.07 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86518==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010d5e1824 bp 0x00016aec1340 sp 0x00016aec1320 T0)
==86518==The signal is caused by a UNKNOWN memory access.
==86518==Hint: address points to the zero page.
    #0 0x10d5e1824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x10dcb1080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x10dcafbe0 in loc_point_process(int, void*) point.cpp:211
    #3 0x10dcaf778 in create_point_process(int, Object*) point.cpp:41
    #4 0x10c14a6d4 in _hoc_create_pnt(Object*) vlag.cpp:87
    #5 0x10dd627cc in decltype(static_cast<void* (*&>(fp)(static_cast<Object*&>(fp0))) std::__1::__invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) type_traits:3918
    #6 0x10dd626b0 in std::__1::invoke_result<void* (*&)(Object*), Object*&>::type std::__1::invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) invoke.h:93
    #7 0x10dd624a0 in decltype(auto) neuron::oc::invoke_method_that_may_throw<call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&>(call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&) oc_ansi.h:78
    #8 0x10dd59bf0 in call_constructor(Object*, Symbol*, int) hoc_oop.cpp:622
    #9 0x10dd59058 in hoc_newobj1(Symbol*, int) hoc_oop.cpp:504
    #10 0x10d5be100 in fcall(void*, void*) nrnpy_hoc.cpp:722
    #11 0x10dba5250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #12 0x10d5bbe78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #13 0x1063d263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #14 0x1064cccb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #15 0x1064ca440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #16 0x1064be98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x1063d28a4 in _PyObject_FastCallDictTstate+0x5c (Python:arm64+0x668a4)
    #18 0x106448964 in slot_tp_init+0xc0 (Python:arm64+0xdc964)
    #19 0x106440920 in type_call+0x11c (Python:arm64+0xd4920)
    #20 0x1063d263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #21 0x1064cccb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #22 0x1064ca468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #23 0x1064be98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #24 0x1064ccc28 in call_function+0x7c (Python:arm64+0x160c28)
    #25 0x1064ca468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #26 0x1064be98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #27 0x1064be800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #28 0x10651a898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #29 0x10651a7fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #30 0x10651a490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #31 0x106519dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #32 0x106519408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #33 0x10653cb20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #34 0x10653c26c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #35 0x10653bb74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #36 0x10653cefc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #37 0x104ffd088 in start+0x204 (dyld:arm64e+0x5088)

==86518==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x0000000108bc3a90   x[2] = 0x000000010747f9a0   x[3] = 0x000000010825c5d8
 x[4] = 0x0000000000000000   x[5] = 0x0000000000000001   x[6] = 0x0000000169ec8000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x0000000025566263  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x0000000000009fd4  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000105568720  x[18] = 0x0000000000000000  x[19] = 0x000000010747f9a0
x[20] = 0x000000010747f9c0  x[21] = 0x000000012ab31310  x[22] = 0x0000007000020000  x[23] = 0x000000010747f9a0
x[24] = 0x000000010747f9c0  x[25] = 0x0000007000020000  x[26] = 0x000000010747f980  x[27] = 0x0000007020eaff30
x[28] = 0x0000000107531c00     fp = 0x000000016aec1340     lr = 0x000000010d5e17f0     sp = 0x000000016aec1320
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86518==ABORTING
Subprocess aborted

        Start  62: hoctests::test_random_hoc
143/304 Test  #61: hoctests::test_loadbal_hoc ...............................................   Passed    0.40 sec
        Start  63: hoctests::perf1_hoc
144/304 Test  #62: hoctests::test_random_hoc ................................................   Passed    0.22 sec
        Start  64: hoctests::test1_hoc
145/304 Test  #64: hoctests::test1_hoc ......................................................   Passed    0.35 sec
        Start  65: hoctests::test2_hoc
146/304 Test  #65: hoctests::test2_hoc ......................................................   Passed    0.20 sec
        Start  66: hoctests::test3_hoc
147/304 Test  #66: hoctests::test3_hoc ......................................................   Passed    0.15 sec
        Start  67: hoctests::test4_hoc
148/304 Test  #67: hoctests::test4_hoc ......................................................   Passed    0.12 sec
        Start  68: hoctests::test5_hoc
149/304 Test  #68: hoctests::test5_hoc ......................................................   Passed    0.12 sec
        Start  69: hoctests::test6_hoc
150/304 Test  #69: hoctests::test6_hoc ......................................................   Passed    0.13 sec
        Start  70: hoctests::test7_hoc
151/304 Test  #55: example_nmodl::cagkftab_py ...............................................***Failed    4.72 sec
NEURON: table not specified in hoc_func_table
 near line 0
 ^
        tst1_cagkftab(5)
NEURON: table not specified in hoc_func_table
 near line 0
 ^
        alp_cagkftab(-50, 0.01)
NEURON: Vector arguments allowed only for functions of one variable
 near line 0
 double a[3][4]
               ^
        table_alp_cagkftab(..., ..., ...)
NEURON: Vector arguments not same size
 near line 0
 ^
        table_tst_cagkftab(..., ...)
NEURON: size arg < 1 in hoc_spec_table
 near line 0
 ^
        table_tst_cagkftab(..., 0, ...)
NEURON: min > max in hoc_spec_table
 near line 0
 ^
        table_tst_cagkftab(..., 131, 50, -80)
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86493==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010c819824 bp 0x00016bca9500 sp 0x00016bca94e0 T0)
==86493==The signal is caused by a UNKNOWN memory access.
==86493==Hint: address points to the zero page.
    #0 0x10c819824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x10cee9080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x10cee7be0 in loc_point_process(int, void*) point.cpp:211
    #3 0x10cee7778 in create_point_process(int, Object*) point.cpp:41
    #4 0x10d023e04 in _hoc_create_pnt(Object*) svclmp.cpp:113
    #5 0x10cf9a7cc in decltype(static_cast<void* (*&>(fp)(static_cast<Object*&>(fp0))) std::__1::__invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) type_traits:3918
    #6 0x10cf9a6b0 in std::__1::invoke_result<void* (*&)(Object*), Object*&>::type std::__1::invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) invoke.h:93
    #7 0x10cf9a4a0 in decltype(auto) neuron::oc::invoke_method_that_may_throw<call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&>(call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&) oc_ansi.h:78
    #8 0x10cf91bf0 in call_constructor(Object*, Symbol*, int) hoc_oop.cpp:622
    #9 0x10cf91058 in hoc_newobj1(Symbol*, int) hoc_oop.cpp:504
    #10 0x10c7f6100 in fcall(void*, void*) nrnpy_hoc.cpp:722
    #11 0x10cddd250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #12 0x10c7f3e78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #13 0x10553e63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #14 0x105638cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #15 0x105636440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #16 0x10562a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x105638c28 in call_function+0x7c (Python:arm64+0x160c28)
    #18 0x105636468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #19 0x10562a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #20 0x105638c28 in call_function+0x7c (Python:arm64+0x160c28)
    #21 0x105636468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #22 0x10562a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #23 0x10562a800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #24 0x105686898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #25 0x1056867fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #26 0x105686490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #27 0x105685dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #28 0x105685408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #29 0x1056a8b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #30 0x1056a826c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #31 0x1056a7b74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #32 0x1056a8efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #33 0x104265088 in start+0x204 (dyld:arm64e+0x5088)

==86493==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x0000000107dc9990   x[2] = 0x0000000106501ba0   x[3] = 0x000000010745baf8
 x[4] = 0x0000000000000000   x[5] = 0x0000000000000001   x[6] = 0x000000016acb0000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x00000000253a51ef  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x0000000000756298  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x00000001046d4720  x[18] = 0x0000000000000000  x[19] = 0x0000000106501ba0
x[20] = 0x0000000106501bc0  x[21] = 0x0000000129d28f70  x[22] = 0x0000007000020000  x[23] = 0x0000000106501ba0
x[24] = 0x0000000106501bc0  x[25] = 0x0000007000020000  x[26] = 0x0000000106501b80  x[27] = 0x0000007020cc0370
x[28] = 0x000000010663e200     fp = 0x000000016bca9500     lr = 0x000000010c8197f0     sp = 0x000000016bca94e0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86493==ABORTING
Subprocess aborted

        Start  71: hoctests::test8_hoc
152/304 Test  #70: hoctests::test7_hoc ......................................................   Passed    0.14 sec
        Start  72: hoctests::test9_hoc
153/304 Test  #71: hoctests::test8_hoc ......................................................   Passed    0.15 sec
        Start  73: hoctests::test_bbss_py
154/304 Test  #72: hoctests::test9_hoc ......................................................   Passed    0.14 sec
        Start  74: hoctests::test_cvinterp_py
155/304 Test  #63: hoctests::perf1_hoc ......................................................   Passed    1.56 sec
        Start  75: hoctests::test_hocGUI2_py
156/304 Test  #73: hoctests::test_bbss_py ...................................................***Failed    1.25 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86574==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x000109285004 bp 0x00016f25ddf0 sp 0x00016f25dd40 T0)
==86574==The signal is caused by a UNKNOWN memory access.
==86574==Hint: address points to the zero page.
    #0 0x109285004 in segment_getattro(NPySegObj*, _object*) nrnpy_nrn.cpp:2185
    #1 0x109284a0c in nrn::convert_cxx_exceptions_trait<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>::return_type nrn::convert_cxx_exceptions<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>(_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&) convert_cxx_exceptions.hpp:45
    #2 0x109283d20 in segment_getattro_safe(NPySegObj*, _object*) nrnpy_nrn.cpp:2298
    #3 0x1022ce87c in _PyEval_EvalFrameDefault+0x6c98 (Python:arm64+0x15a87c)
    #4 0x1022c698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #5 0x1022d4c28 in call_function+0x7c (Python:arm64+0x160c28)
    #6 0x1022d2468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #7 0x1022c698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #8 0x1022c6800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #9 0x102322898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #10 0x1023227fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #11 0x102322490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #12 0x102321dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #13 0x102321408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #14 0x102344b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #15 0x10234426c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #16 0x102343b74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #17 0x102344efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #18 0x100f05088 in start+0x204 (dyld:arm64e+0x5088)

==86574==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x00000001068598b0   x[2] = 0x0000000000000000   x[3] = 0x0000000126031110
 x[4] = 0x000000016f25d9d8   x[5] = 0x000000016f25da58   x[6] = 0x0000000000000100   x[7] = 0x000000016f25d940
 x[8] = 0x0000000000000000   x[9] = 0xf8f8f8f8f2f8f2f2  x[10] = 0x000000700001ffff  x[11] = 0x0000000000300000
x[12] = 0x000000000000042d  x[13] = 0x000000000000042e  x[14] = 0x0000000000000000  x[15] = 0x0000000000000018
x[16] = 0x00000001b58130fc  x[17] = 0x0000000101370720  x[18] = 0x0000000000000000  x[19] = 0x000000016f25dd40
x[20] = 0x000000010340ea00  x[21] = 0x00000070206a1d40  x[22] = 0x0000007000020000  x[23] = 0x000000010340ea00
x[24] = 0x0000000103249100  x[25] = 0x00000001260310f0  x[26] = 0x0000000104c02d40  x[27] = 0x000000010684d0b0
x[28] = 0x00000001085a79e8     fp = 0x000000016f25ddf0     lr = 0x0000000109284f58     sp = 0x000000016f25dd40
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp:2185 in segment_getattro(NPySegObj*, _object*)
==86574==ABORTING
Subprocess aborted

        Start  76: hoctests::test_hocmech_py
157/304 Test  #74: hoctests::test_cvinterp_py ...............................................***Failed    1.21 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86578==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010cd4d824 bp 0x00016b74d500 sp 0x00016b74d4e0 T0)
==86578==The signal is caused by a UNKNOWN memory access.
==86578==Hint: address points to the zero page.
    #0 0x10cd4d824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x10d41d080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x10d41bbe0 in loc_point_process(int, void*) point.cpp:211
    #3 0x10d41b778 in create_point_process(int, Object*) point.cpp:41
    #4 0x10d54f980 in _hoc_create_pnt(Object*) stim.cpp:93
    #5 0x10d4ce7cc in decltype(static_cast<void* (*&>(fp)(static_cast<Object*&>(fp0))) std::__1::__invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) type_traits:3918
    #6 0x10d4ce6b0 in std::__1::invoke_result<void* (*&)(Object*), Object*&>::type std::__1::invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) invoke.h:93
    #7 0x10d4ce4a0 in decltype(auto) neuron::oc::invoke_method_that_may_throw<call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&>(call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&) oc_ansi.h:78
    #8 0x10d4c5bf0 in call_constructor(Object*, Symbol*, int) hoc_oop.cpp:622
    #9 0x10d4c5058 in hoc_newobj1(Symbol*, int) hoc_oop.cpp:504
    #10 0x10cd2a100 in fcall(void*, void*) nrnpy_hoc.cpp:722
    #11 0x10d311250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #12 0x10cd27e78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #13 0x105b9a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #14 0x105c94cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #15 0x105c92440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #16 0x105c8698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x105c94c28 in call_function+0x7c (Python:arm64+0x160c28)
    #18 0x105c92468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #19 0x105c8698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #20 0x105c94c28 in call_function+0x7c (Python:arm64+0x160c28)
    #21 0x105c92468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #22 0x105c8698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #23 0x105c86800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #24 0x105ce2898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #25 0x105ce27fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #26 0x105ce2490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #27 0x105ce1dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #28 0x105ce1408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #29 0x105d04b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #30 0x105d0426c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #31 0x105d03b74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #32 0x105d04efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #33 0x1048c5088 in start+0x204 (dyld:arm64e+0x5088)

==86578==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x00000001083c5d90   x[2] = 0x0000000106ba33a0   x[3] = 0x0000000107a4b7d8
 x[4] = 0x0000000000000000   x[5] = 0x0000000000000001   x[6] = 0x000000016a754000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x00000000214e4dcb  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x0000000000006b48  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000104d30720  x[18] = 0x0000000000000000  x[19] = 0x0000000106ba33a0
x[20] = 0x0000000106ba33c0  x[21] = 0x000000010a726e50  x[22] = 0x0000007000020000  x[23] = 0x0000000106ba33a0
x[24] = 0x0000000106ba33c0  x[25] = 0x0000007000020000  x[26] = 0x0000000106ba3380  x[27] = 0x0000007020d94670
x[28] = 0x0000000106d08700     fp = 0x000000016b74d500     lr = 0x000000010cd4d7f0     sp = 0x000000016b74d4e0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86578==ABORTING
Subprocess aborted

        Start  77: hoctests::test_kschan_py
158/304 Test  #75: hoctests::test_hocGUI2_py ................................................***Failed    1.17 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86582==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010ab61004 bp 0x00016d959570 sp 0x00016d9594c0 T0)
==86582==The signal is caused by a UNKNOWN memory access.
==86582==Hint: address points to the zero page.
    #0 0x10ab61004 in segment_getattro(NPySegObj*, _object*) nrnpy_nrn.cpp:2185
    #1 0x10ab60a0c in nrn::convert_cxx_exceptions_trait<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>::return_type nrn::convert_cxx_exceptions<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>(_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&) convert_cxx_exceptions.hpp:45
    #2 0x10ab5fd20 in segment_getattro_safe(NPySegObj*, _object*) nrnpy_nrn.cpp:2298
    #3 0x10398a87c in _PyEval_EvalFrameDefault+0x6c98 (Python:arm64+0x15a87c)
    #4 0x10398298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #5 0x1038968a4 in _PyObject_FastCallDictTstate+0x5c (Python:arm64+0x668a4)
    #6 0x10390c964 in slot_tp_init+0xc0 (Python:arm64+0xdc964)
    #7 0x103904920 in type_call+0x11c (Python:arm64+0xd4920)
    #8 0x10389663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #9 0x103990cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #10 0x10398e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #11 0x10398298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #12 0x103990c28 in call_function+0x7c (Python:arm64+0x160c28)
    #13 0x10398e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #14 0x10398298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #15 0x103990c28 in call_function+0x7c (Python:arm64+0x160c28)
    #16 0x10398e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #17 0x10398298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #18 0x103982800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #19 0x1039de898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #20 0x1039de7fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #21 0x1039de490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #22 0x1039dddc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #23 0x1039dd408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #24 0x103a00b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #25 0x103a0026c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #26 0x1039ffb74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #27 0x103a00efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #28 0x1024c1088 in start+0x204 (dyld:arm64e+0x5088)

==86582==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x0000000108159770   x[2] = 0x0000000000000000   x[3] = 0x0000000127835850
 x[4] = 0x000000016d959158   x[5] = 0x000000016d9591d8   x[6] = 0x0000000000000100   x[7] = 0x000000016d9590c0
 x[8] = 0x0000000000000000   x[9] = 0xf8f8f8f8f2f8f2f2  x[10] = 0x000000700001ffff  x[11] = 0x0000000000300000
x[12] = 0x00000000000002fb  x[13] = 0x00000000000042fc  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000102a2c720  x[18] = 0x0000000000000000  x[19] = 0x000000016d9594c0
x[20] = 0x0000000104aa4600  x[21] = 0x00000070209748c0  x[22] = 0x0000007000020000  x[23] = 0x0000000104aa4600
x[24] = 0x0000000104883900  x[25] = 0x0000000127835830  x[26] = 0x0000000106302d40  x[27] = 0x000000010814d370
x[28] = 0x0000000106a2f648     fp = 0x000000016d959570     lr = 0x000000010ab60f58     sp = 0x000000016d9594c0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp:2185 in segment_getattro(NPySegObj*, _object*)
==86582==ABORTING
Subprocess aborted

        Start  78: hoctests::test_legacy_setpointer_py
159/304 Test  #76: hoctests::test_hocmech_py ................................................***Failed    1.20 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86589==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x000108839824 bp 0x00016fc99bc0 sp 0x00016fc99ba0 T0)
==86589==The signal is caused by a UNKNOWN memory access.
==86589==Hint: address points to the zero page.
    #0 0x108839824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x108f09080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x108f07be0 in loc_point_process(int, void*) point.cpp:211
    #3 0x108f07778 in create_point_process(int, Object*) point.cpp:41
    #4 0x10903b980 in _hoc_create_pnt(Object*) stim.cpp:93
    #5 0x108fba7cc in decltype(static_cast<void* (*&>(fp)(static_cast<Object*&>(fp0))) std::__1::__invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) type_traits:3918
    #6 0x108fba6b0 in std::__1::invoke_result<void* (*&)(Object*), Object*&>::type std::__1::invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) invoke.h:93
    #7 0x108fba4a0 in decltype(auto) neuron::oc::invoke_method_that_may_throw<call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&>(call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&) oc_ansi.h:78
    #8 0x108fb1bf0 in call_constructor(Object*, Symbol*, int) hoc_oop.cpp:622
    #9 0x108fb1058 in hoc_newobj1(Symbol*, int) hoc_oop.cpp:504
    #10 0x108816100 in fcall(void*, void*) nrnpy_hoc.cpp:722
    #11 0x108dfd250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #12 0x108813e78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #13 0x10163e63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #14 0x101738cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #15 0x101736440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #16 0x10172a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x10172a800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #18 0x101786898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #19 0x1017867fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #20 0x101786490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #21 0x101785dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #22 0x101785408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #23 0x1017a8b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #24 0x1017a826c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #25 0x1017a7b74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #26 0x1017a8efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #27 0x100369088 in start+0x204 (dyld:arm64e+0x5088)

==86589==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x0000000103ec4490   x[2] = 0x000000010262d420   x[3] = 0x00000001035551f8
 x[4] = 0x0000000000000000   x[5] = 0x0000000000000001   x[6] = 0x000000016eca0000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x0000000020c445e3  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x0000000000008809  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x00000001007d4720  x[18] = 0x0000000000000000  x[19] = 0x000000010262d420
x[20] = 0x000000010262d440  x[21] = 0x0000000106222f10  x[22] = 0x0000007000020000  x[23] = 0x000000010262d420
x[24] = 0x000000010262d440  x[25] = 0x0000007000020000  x[26] = 0x000000010262d400  x[27] = 0x00000070204e5a80
x[28] = 0x000000010274bf00     fp = 0x000000016fc99bc0     lr = 0x00000001088397f0     sp = 0x000000016fc99ba0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86589==ABORTING
Subprocess aborted

        Start  79: hoctests::test_mechfunc_py
160/304 Test  #77: hoctests::test_kschan_py .................................................***Failed    1.30 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86592==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010d321824 bp 0x00016b2b5500 sp 0x00016b2b54e0 T0)
==86592==The signal is caused by a UNKNOWN memory access.
==86592==Hint: address points to the zero page.
    #0 0x10d321824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x10d9f1080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x10d9efbe0 in loc_point_process(int, void*) point.cpp:211
    #3 0x10d9ef778 in create_point_process(int, Object*) point.cpp:41
    #4 0x10db23980 in _hoc_create_pnt(Object*) stim.cpp:93
    #5 0x10daa27cc in decltype(static_cast<void* (*&>(fp)(static_cast<Object*&>(fp0))) std::__1::__invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) type_traits:3918
    #6 0x10daa26b0 in std::__1::invoke_result<void* (*&)(Object*), Object*&>::type std::__1::invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) invoke.h:93
    #7 0x10daa24a0 in decltype(auto) neuron::oc::invoke_method_that_may_throw<call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&>(call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&) oc_ansi.h:78
    #8 0x10da99bf0 in call_constructor(Object*, Symbol*, int) hoc_oop.cpp:622
    #9 0x10da99058 in hoc_newobj1(Symbol*, int) hoc_oop.cpp:504
    #10 0x10d2fe100 in fcall(void*, void*) nrnpy_hoc.cpp:722
    #11 0x10d8e5250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #12 0x10d2fbe78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #13 0x105f7e63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #14 0x106078cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #15 0x106076440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #16 0x10606a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x106078c28 in call_function+0x7c (Python:arm64+0x160c28)
    #18 0x106076468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #19 0x10606a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #20 0x106078c28 in call_function+0x7c (Python:arm64+0x160c28)
    #21 0x106076468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #22 0x10606a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #23 0x10606a800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #24 0x1060c6898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #25 0x1060c67fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #26 0x1060c6490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #27 0x1060c5dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #28 0x1060c5408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #29 0x1060e8b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #30 0x1060e826c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #31 0x1060e7b74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #32 0x1060e8efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #33 0x104ba9088 in start+0x204 (dyld:arm64e+0x5088)

==86592==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x00000001087c7690   x[2] = 0x0000000106f6f1a0   x[3] = 0x0000000107e8de38
 x[4] = 0x0000000000000000   x[5] = 0x0000000000000001   x[6] = 0x000000016a2bc000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x0000000025693c2f  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x0000000000016844  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000105114720  x[18] = 0x0000000000000000  x[19] = 0x0000000106f6f1a0
x[20] = 0x0000000106f6f1c0  x[21] = 0x000000012b49e170  x[22] = 0x0000007000020000  x[23] = 0x0000000106f6f1a0
x[24] = 0x0000000106f6f1c0  x[25] = 0x0000007000020000  x[26] = 0x0000000106f6f180  x[27] = 0x0000007020e0de30
x[28] = 0x00000001070e7f00     fp = 0x000000016b2b5500     lr = 0x000000010d3217f0     sp = 0x000000016b2b54e0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86592==ABORTING
Subprocess aborted

        Start  80: hoctests::test_mechstd_py
161/304 Test  #78: hoctests::test_legacy_setpointer_py ......................................***Failed    1.32 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86594==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010968d004 bp 0x00016ee4ddd0 sp 0x00016ee4dd20 T0)
==86594==The signal is caused by a UNKNOWN memory access.
==86594==Hint: address points to the zero page.
    #0 0x10968d004 in segment_getattro(NPySegObj*, _object*) nrnpy_nrn.cpp:2185
    #1 0x10968ca0c in nrn::convert_cxx_exceptions_trait<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>::return_type nrn::convert_cxx_exceptions<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>(_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&) convert_cxx_exceptions.hpp:45
    #2 0x10968bd20 in segment_getattro_safe(NPySegObj*, _object*) nrnpy_nrn.cpp:2298
    #3 0x10257a87c in _PyEval_EvalFrameDefault+0x6c98 (Python:arm64+0x15a87c)
    #4 0x10257298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #5 0x102580c28 in call_function+0x7c (Python:arm64+0x160c28)
    #6 0x10257e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #7 0x10257298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #8 0x102572800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #9 0x1025ce898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #10 0x1025ce7fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #11 0x1025ce490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #12 0x1025cddc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #13 0x1025cd408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #14 0x1025f0b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #15 0x1025f026c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #16 0x1025efb74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #17 0x1025f0efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #18 0x1011b1088 in start+0x204 (dyld:arm64e+0x5088)

==86594==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x0000000105f92b30   x[2] = 0x0000000000000000   x[3] = 0x000000010701ed90
 x[4] = 0x000000016ee4d9b8   x[5] = 0x000000016ee4da38   x[6] = 0x0000000000000100   x[7] = 0x000000016ee4d920
 x[8] = 0x0000000000000000   x[9] = 0xf8f8f8f8f2f8f2f2  x[10] = 0x000000700001ffff  x[11] = 0x0000000000300000
x[12] = 0x00000000000002d4  x[13] = 0x00000000000002d5  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x000000010161c720  x[18] = 0x0000000000000000  x[19] = 0x000000016ee4dd20
x[20] = 0x000000010368f800  x[21] = 0x00000070206f1f00  x[22] = 0x0000007000020000  x[23] = 0x000000010368f800
x[24] = 0x00000001034b3580  x[25] = 0x000000010701ed70  x[26] = 0x0000000104f02d40  x[27] = 0x0000000105ff2d90
x[28] = 0x00000001023bf048     fp = 0x000000016ee4ddd0     lr = 0x000000010968cf58     sp = 0x000000016ee4dd20
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp:2185 in segment_getattro(NPySegObj*, _object*)
==86594==ABORTING
Subprocess aborted

        Start  81: hoctests::test_mode_py
162/304 Test  #79: hoctests::test_mechfunc_py ...............................................   Passed    0.86 sec
        Start  82: hoctests::test_neurondemo_py
163/304 Test  #81: hoctests::test_mode_py ...................................................   Passed    0.76 sec
        Start  83: hoctests::test_nrniv-launch_py
164/304 Test  #83: hoctests::test_nrniv-launch_py ...........................................   Passed    0.29 sec
        Start  84: hoctests::test_optim_node_order_py
165/304 Test  #82: hoctests::test_neurondemo_py .............................................   Passed    0.64 sec
        Start  85: hoctests::test_random_py
166/304 Test  #80: hoctests::test_mechstd_py ................................................***Failed    1.56 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86604==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010b64d004 bp 0x00016ce79970 sp 0x00016ce798c0 T0)
==86604==The signal is caused by a UNKNOWN memory access.
==86604==Hint: address points to the zero page.
    #0 0x10b64d004 in segment_getattro(NPySegObj*, _object*) nrnpy_nrn.cpp:2185
    #1 0x10b64ca0c in nrn::convert_cxx_exceptions_trait<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>::return_type nrn::convert_cxx_exceptions<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>(_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&) convert_cxx_exceptions.hpp:45
    #2 0x10b64bd20 in segment_getattro_safe(NPySegObj*, _object*) nrnpy_nrn.cpp:2298
    #3 0x104581af4 in builtin_getattr+0x7c (Python:arm64+0x14daf4)
    #4 0x1044ec7a4 in cfunction_vectorcall_FASTCALL+0x54 (Python:arm64+0xb87a4)
    #5 0x104594c28 in call_function+0x7c (Python:arm64+0x160c28)
    #6 0x104592468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #7 0x10458698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #8 0x104594c28 in call_function+0x7c (Python:arm64+0x160c28)
    #9 0x104592468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #10 0x10458698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #11 0x104594c28 in call_function+0x7c (Python:arm64+0x160c28)
    #12 0x104592468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #13 0x10458698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #14 0x104586800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #15 0x1045e2898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #16 0x1045e27fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #17 0x1045e2490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #18 0x1045e1dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #19 0x1045e1408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #20 0x104604b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #21 0x10460426c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #22 0x104603b74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #23 0x104604efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #24 0x1031c5088 in start+0x204 (dyld:arm64e+0x5088)

==86604==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x0000000108c5be30   x[2] = 0x0000000000000002   x[3] = 0x0000000000000000
 x[4] = 0x0000000000000000   x[5] = 0x000000016ce796f8   x[6] = 0x0000000000000100   x[7] = 0x000000016ce795e0
 x[8] = 0x0000000000000000   x[9] = 0xf8f8f8f8f2f8f2f2  x[10] = 0x000000700001ffff  x[11] = 0x0000000000300000
x[12] = 0x000000000000032e  x[13] = 0x000000000000432f  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000103630720  x[18] = 0x0000000000000000  x[19] = 0x000000016ce798c0
x[20] = 0x00000001056aec00  x[21] = 0x0000007020af5d80  x[22] = 0x0000007000020000  x[23] = 0x00000001056aec00
x[24] = 0x0000000105495f80  x[25] = 0x0000000108ceb150  x[26] = 0x0000000106f02d40  x[27] = 0x0000000108c4d160
x[28] = 0x0000000128251570     fp = 0x000000016ce79970     lr = 0x000000010b64cf58     sp = 0x000000016ce798c0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp:2185 in segment_getattro(NPySegObj*, _object*)
==86604==ABORTING
Subprocess aborted

        Start  86: hoctests::test_setdata_py
167/304 Test  #84: hoctests::test_optim_node_order_py .......................................***Failed    1.25 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86617==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010d1b9004 bp 0x00016b3018b0 sp 0x00016b301800 T0)
==86617==The signal is caused by a UNKNOWN memory access.
==86617==Hint: address points to the zero page.
    #0 0x10d1b9004 in segment_getattro(NPySegObj*, _object*) nrnpy_nrn.cpp:2185
    #1 0x10d1b8a0c in nrn::convert_cxx_exceptions_trait<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>::return_type nrn::convert_cxx_exceptions<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>(_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&) convert_cxx_exceptions.hpp:45
    #2 0x10d1b7d20 in segment_getattro_safe(NPySegObj*, _object*) nrnpy_nrn.cpp:2298
    #3 0x1060a687c in _PyEval_EvalFrameDefault+0x6c98 (Python:arm64+0x15a87c)
    #4 0x10609e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #5 0x105fb28a4 in _PyObject_FastCallDictTstate+0x5c (Python:arm64+0x668a4)
    #6 0x106028964 in slot_tp_init+0xc0 (Python:arm64+0xdc964)
    #7 0x106020920 in type_call+0x11c (Python:arm64+0xd4920)
    #8 0x105fb263c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #9 0x1060accb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #10 0x1060aa468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #11 0x10609e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #12 0x1060acc28 in call_function+0x7c (Python:arm64+0x160c28)
    #13 0x1060aa468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #14 0x10609e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #15 0x10609e800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #16 0x1060fa898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #17 0x1060fa7fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #18 0x1060fa490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #19 0x1060f9dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #20 0x1060f9408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #21 0x10611cb20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #22 0x10611c26c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #23 0x10611bb74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #24 0x10611cefc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #25 0x104bdd088 in start+0x204 (dyld:arm64e+0x5088)

==86617==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x000000010a759870   x[2] = 0x0000000000000000   x[3] = 0x000000012a613730
 x[4] = 0x000000016b301498   x[5] = 0x000000016b301518   x[6] = 0x0000000000000100   x[7] = 0x000000016b301400
 x[8] = 0x0000000000000000   x[9] = 0xf8f8f8f8f2f8f2f2  x[10] = 0x000000700001ffff  x[11] = 0x0000000000300000
x[12] = 0x00000000000002dd  x[13] = 0x00000000000002de  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000105148720  x[18] = 0x0000000000000000  x[19] = 0x000000016b301800
x[20] = 0x00000001071bca00  x[21] = 0x0000007020e57940  x[22] = 0x0000007000020000  x[23] = 0x00000001071bca00
x[24] = 0x0000000106fe0780  x[25] = 0x000000012a613710  x[26] = 0x0000000108a02d40  x[27] = 0x000000010a74d000
x[28] = 0x00000001286f2950     fp = 0x000000016b3018b0     lr = 0x000000010d1b8f58     sp = 0x000000016b301800
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp:2185 in segment_getattro(NPySegObj*, _object*)
==86617==ABORTING
Subprocess aborted

        Start  87: hoctests::test_shape_py
168/304 Test  #85: hoctests::test_random_py .................................................***Failed    1.26 sec
NEURON: NMODLRandom wrapped handle is not valid
 near line 0
 objref hoc_obj_[2]
                   ^
        NMODLRandom[0].get_seq()
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86619==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010d335004 bp 0x00016b262150 sp 0x00016b2620a0 T0)
==86619==The signal is caused by a UNKNOWN memory access.
==86619==Hint: address points to the zero page.
    #0 0x10d335004 in segment_getattro(NPySegObj*, _object*) nrnpy_nrn.cpp:2185
    #1 0x10d334a0c in nrn::convert_cxx_exceptions_trait<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>::return_type nrn::convert_cxx_exceptions<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>(_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&) convert_cxx_exceptions.hpp:45
    #2 0x10d333d20 in segment_getattro_safe(NPySegObj*, _object*) nrnpy_nrn.cpp:2298
    #3 0x10626287c in _PyEval_EvalFrameDefault+0x6c98 (Python:arm64+0x15a87c)
    #4 0x10625a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #5 0x10625a800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #6 0x1062b6898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #7 0x1062b67fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #8 0x1062b6490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #9 0x1062b5dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #10 0x1062b5408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #11 0x1062d8b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #12 0x1062d826c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #13 0x1062d7b74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #14 0x1062d8efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #15 0x104e99088 in start+0x204 (dyld:arm64e+0x5088)

==86619==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x000000010a959b70   x[2] = 0x0000000000000000   x[3] = 0x000000012a838710
 x[4] = 0x000000016b261d38   x[5] = 0x000000016b261db8   x[6] = 0x0000000000000100   x[7] = 0x000000016b261ca0
 x[8] = 0x0000000000000000   x[9] = 0xf8f8f8f8f2f8f2f2  x[10] = 0x000000700001ffff  x[11] = 0x0000000000300000
x[12] = 0x0000000000000474  x[13] = 0x0000000000000475  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000105304720  x[18] = 0x0000000000000000  x[19] = 0x000000016b2620a0
x[20] = 0x00000001073ab800  x[21] = 0x0000007020e95700  x[22] = 0x0000007000020000  x[23] = 0x00000001073ab800
x[24] = 0x00000001071b9e80  x[25] = 0x000000012a8386f0  x[26] = 0x0000000108c02d40  x[27] = 0x000000010a94cf50
x[28] = 0x0000000106029fc0     fp = 0x000000016b262150     lr = 0x000000010d334f58     sp = 0x000000016b2620a0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp:2185 in segment_getattro(NPySegObj*, _object*)
==86619==ABORTING
Subprocess aborted

        Start  88: hoctests::test_thread_partition_py
169/304 Test  #86: hoctests::test_setdata_py ................................................***Failed    1.20 sec
NEURON: No data for A_sdatats. Requires prior call to setdata_sdatats and that the specified mechanism instance still be in existence.
 near line 0
 objref hoc_obj_[2]
                   ^
        A_sdatats(5, 6, 7)
NEURON: setdata_sdatats not enough arguments
 near line 0
 ^
        setdata_sdatats()
NEURON: Section access unspecified
 near line 0
 ^
        setdata_sdatats(0.5)
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86621==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010aeb9824 bp 0x00016d5e5a80 sp 0x00016d5e5a60 T0)
==86621==The signal is caused by a UNKNOWN memory access.
==86621==Hint: address points to the zero page.
    #0 0x10aeb9824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x10b589080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x10b4e0184 in hoc_getdata_range(int) cabcode.cpp:1080
    #3 0x1095969a8 in _hoc_setdata() sdata_ts.cpp:122
    #4 0x10b5efff8 in hoc_call() code.cpp:1418
    #5 0x10ae962b0 in fcall(void*, void*) nrnpy_hoc.cpp:746
    #6 0x10b47d250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #7 0x10ae93e78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #8 0x103c8a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #9 0x103d84cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #10 0x103d82468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #11 0x103d7698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #12 0x103d84c28 in call_function+0x7c (Python:arm64+0x160c28)
    #13 0x103d82468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #14 0x103d7698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #15 0x103d76800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #16 0x103dd2898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #17 0x103dd27fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #18 0x103dd2490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #19 0x103dd1dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #20 0x103dd1408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #21 0x103df4b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #22 0x103df426c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #23 0x103df3b74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #24 0x103df4efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #25 0x1028b5088 in start+0x204 (dyld:arm64e+0x5088)

==86621==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x00000001064bf990   x[2] = 0x0000000104cccc40   x[3] = 0x0000000000000000
 x[4] = 0x0000000107960460   x[5] = 0x0000000000000001   x[6] = 0x000000016c5ec000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x000000002109be33  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x0000000000001279  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000102e20720  x[18] = 0x0000000000000000  x[19] = 0x0000000104cccc40
x[20] = 0x0000000104cccc20  x[21] = 0x00000001084df190  x[22] = 0x0000007000020000  x[23] = 0x0000000104cccc40
x[24] = 0x0000007000020000  x[25] = 0x0000000104cccc00  x[26] = 0x00000070209b9980  x[27] = 0x0000000104ec0600
x[28] = 0x0000000000000000     fp = 0x000000016d5e5a80     lr = 0x000000010aeb97f0     sp = 0x000000016d5e5a60
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86621==ABORTING
Subprocess aborted

        Start  89: hoctests::test1_py
170/304 Test  #87: hoctests::test_shape_py ..................................................   Passed    0.92 sec
        Start  90: hoctests::test2_py
171/304 Test  #89: hoctests::test1_py .......................................................   Passed    0.79 sec
        Start  91: hoctests::test9_py
172/304 Test  #90: hoctests::test2_py .......................................................   Passed    0.78 sec
        Start  97: coreneuron_standalone::test_nrn_corenrn_standalone
173/304 Test  #88: hoctests::test_thread_partition_py .......................................***Failed    1.65 sec
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86631==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010922dc14 bp 0x00016f349450 sp 0x00016f3493a0 T0)
==86631==The signal is caused by a UNKNOWN memory access.
==86631==Hint: address points to the zero page.
    #0 0x10922dc14 in NPySecObj_connect(NPySecObj*, _object*) nrnpy_nrn.cpp:1476
    #1 0x109226db4 in nrn::convert_cxx_exceptions_trait<_object* (*)(NPySecObj*, _object*), NPySecObj*&, _object*&>::return_type nrn::convert_cxx_exceptions<_object* (*)(NPySecObj*, _object*), NPySecObj*&, _object*&>(_object* (*)(NPySecObj*, _object*), NPySecObj*&, _object*&) convert_cxx_exceptions.hpp:45
    #2 0x10922ac28 in NPySecObj_connect_safe(NPySecObj*, _object*) nrnpy_nrn.cpp:1497
    #3 0x102097ab8 in cfunction_call+0x5c (Python:arm64+0xb7ab8)
    #4 0x10204663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #5 0x102140cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #6 0x10213e440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #7 0x10213298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #8 0x1020468a4 in _PyObject_FastCallDictTstate+0x5c (Python:arm64+0x668a4)
    #9 0x1020bc964 in slot_tp_init+0xc0 (Python:arm64+0xdc964)
    #10 0x1020b4920 in type_call+0x11c (Python:arm64+0xd4920)
    #11 0x10204663c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #12 0x102140cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #13 0x10213e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #14 0x10213298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #15 0x102140c28 in call_function+0x7c (Python:arm64+0x160c28)
    #16 0x10213e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #17 0x10213298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #18 0x102140c28 in call_function+0x7c (Python:arm64+0x160c28)
    #19 0x10213e468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #20 0x10213298c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #21 0x102132800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #22 0x10218e898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #23 0x10218e7fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #24 0x10218e490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #25 0x10218ddc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #26 0x10218d408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #27 0x1021b0b20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #28 0x1021b026c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #29 0x1021afb74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #30 0x1021b0efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #31 0x100d71088 in start+0x204 (dyld:arm64e+0x5088)

==86631==Register values:
 x[0] = 0x0000000125f35088   x[1] = 0x00000001048bf990   x[2] = 0x000000016f349368   x[3] = 0x0000000000000002
 x[4] = 0x000000016f349178   x[5] = 0x000000016f3491f8   x[6] = 0x0000000000000100   x[7] = 0x000000016f3490e0
 x[8] = 0x0000000000000000   x[9] = 0x0000000000000000  x[10] = 0xc08f400000000000  x[11] = 0x0000000020611488
x[12] = 0x0000000109b68145  x[13] = 0x00000000000012a9  x[14] = 0x0000000000000000  x[15] = 0x0074636500000000
x[16] = 0x00000001020c7b38  x[17] = 0x00000001011dc720  x[18] = 0x0000000000000000  x[19] = 0x000000016f3493a0
x[20] = 0x000000010308a400  x[21] = 0x0000007000020000  x[22] = 0x00000001201415d0  x[23] = 0x000000010308a440
x[24] = 0x000000010308a460  x[25] = 0x0000000000000010  x[26] = 0x0000000000000002  x[27] = 0x000000010308a400
x[28] = 0x0000007020631480     fp = 0x000000016f349450     lr = 0x000000010922db8c     sp = 0x000000016f3493a0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp:1476 in NPySecObj_connect(NPySecObj*, _object*)
==86631==ABORTING
Subprocess aborted

        Start  98: nmodl_tests::test_table
174/304 Test  #91: hoctests::test9_py .......................................................***Failed    1.32 sec
NEURON: Couldn't find: expect_err.hoc
 near line 0
 objref hoc_obj_[2]
                   ^
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86646==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010a785004 bp 0x00016dd51890 sp 0x00016dd517e0 T0)
==86646==The signal is caused by a UNKNOWN memory access.
==86646==Hint: address points to the zero page.
    #0 0x10a785004 in segment_getattro(NPySegObj*, _object*) nrnpy_nrn.cpp:2185
    #1 0x10a784a0c in nrn::convert_cxx_exceptions_trait<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>::return_type nrn::convert_cxx_exceptions<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>(_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&) convert_cxx_exceptions.hpp:45
    #2 0x10a783d20 in segment_getattro_safe(NPySegObj*, _object*) nrnpy_nrn.cpp:2298
    #3 0x10369687c in _PyEval_EvalFrameDefault+0x6c98 (Python:arm64+0x15a87c)
    #4 0x10368e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #5 0x10368e800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #6 0x1036ea898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #7 0x1036ea7fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #8 0x1036edc18 in PyRun_StringFlags+0x7c (Python:arm64+0x1b1c18)
    #9 0x103689284 in builtin_eval+0x178 (Python:arm64+0x14d284)
    #10 0x1035f47a4 in cfunction_vectorcall_FASTCALL+0x54 (Python:arm64+0xb87a4)
    #11 0x10369cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #12 0x10369a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #13 0x10368e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #14 0x10369cc28 in call_function+0x7c (Python:arm64+0x160c28)
    #15 0x10369a468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #16 0x10368e98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x10368e800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #18 0x1036ea898 in run_eval_code_obj+0x50 (Python:arm64+0x1ae898)
    #19 0x1036ea7fc in run_mod+0x6c (Python:arm64+0x1ae7fc)
    #20 0x1036ea490 in pyrun_file+0x90 (Python:arm64+0x1ae490)
    #21 0x1036e9dc4 in _PyRun_SimpleFileObject+0x108 (Python:arm64+0x1addc4)
    #22 0x1036e9408 in _PyRun_AnyFileObject+0xe4 (Python:arm64+0x1ad408)
    #23 0x10370cb20 in pymain_run_file_obj+0xd8 (Python:arm64+0x1d0b20)
    #24 0x10370c26c in pymain_run_file+0x44 (Python:arm64+0x1d026c)
    #25 0x10370bb74 in Py_RunMain+0x3dc (Python:arm64+0x1cfb74)
    #26 0x10370cefc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #27 0x1022cd088 in start+0x204 (dyld:arm64e+0x5088)

==86646==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x0000000107d595b0   x[2] = 0x00000001035fd1b0   x[3] = 0x0000000104577830
 x[4] = 0x000000016dd51478   x[5] = 0x000000016dd514f8   x[6] = 0x0000000000000001   x[7] = 0x000000016dd513e0
 x[8] = 0x0000000000000000   x[9] = 0xf8f8f8f8f2f8f2f2  x[10] = 0x000000700001ffff  x[11] = 0x0000000000300000
x[12] = 0x000000000000057e  x[13] = 0x0000000000000d7f  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000102738720  x[18] = 0x0000000000000000  x[19] = 0x000000016dd517e0
x[20] = 0x0000000104800c00  x[21] = 0x0000007020920180  x[22] = 0x0000007000020000  x[23] = 0x0000000104800c00
x[24] = 0x0000000104577880  x[25] = 0x0000000127545030  x[26] = 0x0000000106002d40  x[27] = 0x0000000107d4d580
x[28] = 0x0000000107d24fa8     fp = 0x000000016dd51890     lr = 0x000000010a784f58     sp = 0x000000016dd517e0
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp:2185 in segment_getattro(NPySegObj*, _object*)
==86646==ABORTING
Subprocess aborted

        Start  99: nmodl_tests::test_disc
175/304 Test  #97: coreneuron_standalone::test_nrn_corenrn_standalone .......................***Failed    1.23 sec
============================= test session starts ==============================
platform darwin -- Python 3.10.13, pytest-8.1.1, pluggy-1.5.0
rootdir: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn
plugins: cov-5.0.0, anyio-4.4.0
collected 2 items

test/coreneuron/test_psolve.py Fatal Python error: Segmentation fault

Thread 0x000000016c84b000 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui.py", line 107 in run
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/threading.py", line 1016 in _bootstrap_inner
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/threading.py", line 973 in _bootstrap

Current thread 0x0000000104ab8580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py", line 17 in model
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py", line 29 in test_psolve
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86649==ERROR: AddressSanitizer: SEGV on unknown address 0x00011cf28000 (pc 0x000110921824 bp 0x00016b462640 sp 0x00016b462620 T0)
==86649==The signal is caused by a UNKNOWN memory access.
    #0 0x110921824 in o2loc(Object*, Section**, double*) nrnpy_nrn.cpp
    #1 0x110ff1080 in nrn_seg_or_x_arg(int, Section**, double*) point.cpp:178
    #2 0x110fefbe0 in loc_point_process(int, void*) point.cpp:211
    #3 0x110fef778 in create_point_process(int, Object*) point.cpp:41
    #4 0x111123980 in _hoc_create_pnt(Object*) stim.cpp:93
    #5 0x1110a27cc in decltype(static_cast<void* (*&>(fp)(static_cast<Object*&>(fp0))) std::__1::__invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) type_traits:3918
    #6 0x1110a26b0 in std::__1::invoke_result<void* (*&)(Object*), Object*&>::type std::__1::invoke<void* (*&)(Object*), Object*&>(void* (*&)(Object*), Object*&) invoke.h:93
    #7 0x1110a24a0 in decltype(auto) neuron::oc::invoke_method_that_may_throw<call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&>(call_constructor(Object*, Symbol*, int)::$_0, void* (*&)(Object*), Object*&) oc_ansi.h:78
    #8 0x111099bf0 in call_constructor(Object*, Symbol*, int) hoc_oop.cpp:622
    #9 0x111099058 in hoc_newobj1(Symbol*, int) hoc_oop.cpp:504
    #10 0x1108fe100 in fcall(void*, void*) nrnpy_hoc.cpp:722
    #11 0x110ee5250 in OcJump::fpycall(void* (*)(void*, void*), void*, void*) ocjump.cpp:161
    #12 0x1108fbe78 in hocobj_call(PyHocObject*, _object*, _object*) nrnpy_hoc.cpp:814
    #13 0x105e1a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #14 0x105f14cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #15 0x105f12440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #16 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #17 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #18 0x105f12468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #19 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #20 0x105f12608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #21 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #22 0x105f12608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #23 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #24 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #25 0x105f12440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #26 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #27 0x105e1d8a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #28 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #29 0x105f12440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #30 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #31 0x105e1a914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #32 0x105e8f604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #33 0x105e1a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #34 0x105f14cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #35 0x105f124f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #36 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #37 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #38 0x105f123c8 in _PyEval_EvalFrameDefault+0xa7e4 (Python:arm64+0x15e3c8)
    #39 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #40 0x105f12608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #41 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #42 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #43 0x105f12440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #44 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #45 0x105e1d8a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #46 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #47 0x105f12440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #48 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #49 0x105e1a914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #50 0x105e8f604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #51 0x105e1b05c in _PyObject_Call+0x7c (Python:arm64+0x6705c)
    #52 0x105f12608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #53 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #54 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #55 0x105f12468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #56 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #57 0x105e1d8a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #58 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #59 0x105f124f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #60 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #61 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #62 0x105f12468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #63 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #64 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #65 0x105f124f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #66 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #67 0x105f12608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #68 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #69 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #70 0x105f12440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #71 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #72 0x105e1d8a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #73 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #74 0x105f12440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #75 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #76 0x105e1a914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #77 0x105e8f604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #78 0x105e1a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #79 0x105f14cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #80 0x105f124f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #81 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #82 0x105f12608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #83 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #84 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #85 0x105f12440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #86 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #87 0x105e1d8a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #88 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #89 0x105f12440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #90 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #91 0x105e1a914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #92 0x105e8f604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #93 0x105e1a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #94 0x105f14cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #95 0x105f124f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #96 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #97 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #98 0x105f12468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #99 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #100 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #101 0x105f12468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #102 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #103 0x105f12608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #104 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #105 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #106 0x105f12440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #107 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #108 0x105e1d8a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #109 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #110 0x105f12440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #111 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #112 0x105e1a914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #113 0x105e8f604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #114 0x105e1a63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #115 0x105f14cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #116 0x105f124f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #117 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #118 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #119 0x105f12468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #120 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #121 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #122 0x105f12440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #123 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #124 0x105f06800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #125 0x105f01690 in builtin_exec+0x178 (Python:arm64+0x14d690)
    #126 0x105e6c7a4 in cfunction_vectorcall_FASTCALL+0x54 (Python:arm64+0xb87a4)
    #127 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #128 0x105f12468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #129 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #130 0x105f14c28 in call_function+0x7c (Python:arm64+0x160c28)
    #131 0x105f12468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #132 0x105f0698c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #133 0x105f83fcc in pymain_run_module+0xcc (Python:arm64+0x1cffcc)
    #134 0x105f83b68 in Py_RunMain+0x3d0 (Python:arm64+0x1cfb68)
    #135 0x105f84efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #136 0x104a45088 in start+0x204 (dyld:arm64e+0x5088)

==86649==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x000000010e1f8790   x[2] = 0x0000000106df6720   x[3] = 0x0000000107d52858
 x[4] = 0x0000000000000000   x[5] = 0x0000000000000001   x[6] = 0x000000016a470000   x[7] = 0x0000000000000001
 x[8] = 0x0000000000000000   x[9] = 0x0000000021afec67  x[10] = 0x0000000000000000  x[11] = 0x0000000000000000
x[12] = 0x0000000000000032  x[13] = 0x00000000000085af  x[14] = 0x0000000000000000  x[15] = 0x0000000000000006
x[16] = 0x00000001b58130fc  x[17] = 0x0000000104fb0720  x[18] = 0x0000000000000000  x[19] = 0x0000000106df6720
x[20] = 0x0000000106df6740  x[21] = 0x000000010d7f6330  x[22] = 0x0000007000020000  x[23] = 0x0000000106df6720
x[24] = 0x0000000106df6740  x[25] = 0x0000007000020000  x[26] = 0x0000000106df6700  x[27] = 0x0000007020ddece0
x[28] = 0x0000000106f19600     fp = 0x000000016b462640     lr = 0x00000001109217f0     sp = 0x000000016b462620
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp in o2loc(Object*, Section**, double*)
==86649==ABORTING
Fatal Python error: Aborted

Thread 0x000000016c84b000 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui.py", line 107 in run
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/threading.py", line 1016 in _bootstrap_inner
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/threading.py", line 973 in _bootstrap

Current thread 0x0000000104ab8580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py", line 17 in model
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py", line 29 in test_psolve
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
Subprocess aborted

        Start 100: nmodl_tests::test_function_table
176/304 Test  #98: nmodl_tests::test_table ..................................................***Failed    1.46 sec
============================= test session starts ==============================
platform darwin -- Python 3.10.13, pytest-8.1.1, pluggy-1.5.0
rootdir: /Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn
plugins: cov-5.0.0, anyio-4.4.0
collected 1 item

test/nmodl/test_table.py Fatal Python error: Segmentation fault

Thread 0x000000016e83f000 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui.py", line 107 in run
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/threading.py", line 1016 in _bootstrap_inner
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/threading.py", line 973 in _bootstrap

Current thread 0x0000000102c3c580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/docs/nmodl/python_scripts/table.py", line 15 in record
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nmodl_tests/test_table/test/nmodl/test_table.py", line 11 in test_table
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 240 in <lambda>
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 340 in from_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 239 in call_and_report
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 134 in runtestprotocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 115 in pytest_runtest_protocol
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 364 in pytest_runtestloop
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 339 in _main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 285 in wrap_session
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 174 in main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/config/__init__.py", line 197 in console_main
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest/__main__.py", line 7 in <module>
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 86 in _run_code
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/runpy.py", line 196 in _run_module_as_main

Extension modules: _neuron_section, nrn, hoc, neuron.hoc, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator (total: 17)
AddressSanitizer:DEADLYSIGNAL
=================================================================
==86652==ERROR: AddressSanitizer: SEGV on unknown address 0x000000000010 (pc 0x00010e935004 bp 0x00016d456c10 sp 0x00016d456b60 T0)
==86652==The signal is caused by a UNKNOWN memory access.
==86652==Hint: address points to the zero page.
    #0 0x10e935004 in segment_getattro(NPySegObj*, _object*) nrnpy_nrn.cpp:2185
    #1 0x10e934a0c in nrn::convert_cxx_exceptions_trait<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>::return_type nrn::convert_cxx_exceptions<_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&>(_object* (*)(NPySegObj*, _object*), NPySegObj*&, _object*&) convert_cxx_exceptions.hpp:45
    #2 0x10e933d20 in segment_getattro_safe(NPySegObj*, _object*) nrnpy_nrn.cpp:2298
    #3 0x103f9287c in _PyEval_EvalFrameDefault+0x6c98 (Python:arm64+0x15a87c)
    #4 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #5 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #6 0x103f963c8 in _PyEval_EvalFrameDefault+0xa7e4 (Python:arm64+0x15e3c8)
    #7 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #8 0x103f96608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #9 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #10 0x103f96608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #11 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #12 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #13 0x103f96440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #14 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #15 0x103ea18a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #16 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #17 0x103f96440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #18 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #19 0x103e9e914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #20 0x103f13604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #21 0x103e9e63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #22 0x103f98cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #23 0x103f964f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #24 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #25 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #26 0x103f963c8 in _PyEval_EvalFrameDefault+0xa7e4 (Python:arm64+0x15e3c8)
    #27 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #28 0x103f96608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #29 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #30 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #31 0x103f96440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #32 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #33 0x103ea18a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #34 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #35 0x103f96440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #36 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #37 0x103e9e914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #38 0x103f13604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #39 0x103e9f05c in _PyObject_Call+0x7c (Python:arm64+0x6705c)
    #40 0x103f96608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #41 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #42 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #43 0x103f96468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #44 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #45 0x103ea18a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #46 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #47 0x103f964f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #48 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #49 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #50 0x103f96468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #51 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #52 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #53 0x103f964f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #54 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #55 0x103f96608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #56 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #57 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #58 0x103f96440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #59 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #60 0x103ea18a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #61 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #62 0x103f96440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #63 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #64 0x103e9e914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #65 0x103f13604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #66 0x103e9e63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #67 0x103f98cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #68 0x103f964f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #69 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #70 0x103f96608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #71 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #72 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #73 0x103f96440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #74 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #75 0x103ea18a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #76 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #77 0x103f96440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #78 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #79 0x103e9e914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #80 0x103f13604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #81 0x103e9e63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #82 0x103f98cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #83 0x103f964f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #84 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #85 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #86 0x103f96468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #87 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #88 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #89 0x103f96468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #90 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #91 0x103f96608 in _PyEval_EvalFrameDefault+0xaa24 (Python:arm64+0x15e608)
    #92 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #93 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #94 0x103f96440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #95 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #96 0x103ea18a4 in method_vectorcall+0x78 (Python:arm64+0x698a4)
    #97 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #98 0x103f96440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #99 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #100 0x103e9e914 in _PyObject_FastCallDictTstate+0xcc (Python:arm64+0x66914)
    #101 0x103f13604 in slot_tp_call+0xc0 (Python:arm64+0xdb604)
    #102 0x103e9e63c in _PyObject_MakeTpCall+0x84 (Python:arm64+0x6663c)
    #103 0x103f98cb8 in call_function+0x10c (Python:arm64+0x160cb8)
    #104 0x103f964f0 in _PyEval_EvalFrameDefault+0xa90c (Python:arm64+0x15e4f0)
    #105 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #106 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #107 0x103f96468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #108 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #109 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #110 0x103f96440 in _PyEval_EvalFrameDefault+0xa85c (Python:arm64+0x15e440)
    #111 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #112 0x103f8a800 in PyEval_EvalCode+0x64 (Python:arm64+0x152800)
    #113 0x103f85690 in builtin_exec+0x178 (Python:arm64+0x14d690)
    #114 0x103ef07a4 in cfunction_vectorcall_FASTCALL+0x54 (Python:arm64+0xb87a4)
    #115 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #116 0x103f96468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #117 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #118 0x103f98c28 in call_function+0x7c (Python:arm64+0x160c28)
    #119 0x103f96468 in _PyEval_EvalFrameDefault+0xa884 (Python:arm64+0x15e468)
    #120 0x103f8a98c in _PyEval_Vector+0x174 (Python:arm64+0x15298c)
    #121 0x104007fcc in pymain_run_module+0xcc (Python:arm64+0x1cffcc)
    #122 0x104007b68 in Py_RunMain+0x3d0 (Python:arm64+0x1cfb68)
    #123 0x104008efc in Py_BytesMain+0x24 (Python:arm64+0x1d0efc)
    #124 0x102bc9088 in start+0x204 (dyld:arm64e+0x5088)

==86652==Register values:
 x[0] = 0x0000000000000010   x[1] = 0x000000012a53ccb0   x[2] = 0x0000000000000000   x[3] = 0x000000010b7f6830
 x[4] = 0x000000016d4567f8   x[5] = 0x000000016d456878   x[6] = 0x0000000000000100   x[7] = 0x000000016d456760
 x[8] = 0x0000000000000000   x[9] = 0xf8f8f8f8f2f8f2f2  x[10] = 0x000000700001ffff  x[11] = 0x0000000000300000
x[12] = 0x00000000000004a1  x[13] = 0x00000000000044a2  x[14] = 0x0000000000000000  x[15] = 0x0000000000000018
x[16] = 0x00000001b58130fc  x[17] = 0x0000000103034720  x[18] = 0x0000000000000000  x[19] = 0x000000016d456b60
x[20] = 0x00000001050e1200  x[21] = 0x0000007020a3c240  x[22] = 0x0000007000020000  x[23] = 0x00000001050e1200
x[24] = 0x0000000104eac700  x[25] = 0x000000010b7f6810  x[26] = 0x0000000106902d40  x[27] = 0x000000012a5398f0
x[28] = 0x000000012a55de78     fp = 0x000000016d456c10     lr = 0x000000010e934f58     sp = 0x000000016d456b60
AddressSanitizer can not provide additional info.
SUMMARY: AddressSanitizer: SEGV nrnpy_nrn.cpp:2185 in segment_getattro(NPySegObj*, _object*)
==86652==ABORTING
Fatal Python error: Aborted

Thread 0x000000016e83f000 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/lib/python/neuron/gui.py", line 107 in run
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/threading.py", line 1016 in _bootstrap_inner
  File "/opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/lib/python3.10/threading.py", line 973 in _bootstrap

Current thread 0x0000000102c3c580 (most recent call first):
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/docs/nmodl/python_scripts/table.py", line 15 in record
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/build/test/nmodl_tests/test_table/test/nmodl/test_table.py", line 11 in test_table
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 195 in pytest_pyfunc_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/python.py", line 1772 in runtest
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/_pytest/runner.py", line 172 in pytest_runtest_call
  File "/Users/gitlab-runner/builds/2/P220127/J1337614/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/Users/gitlab-runner/builds/2/P220127

## spack-setup.txt

      
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## test-neuron-nmodl-intel-legacy.txt

      
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## test-neuron-nmodl-intel-shared.txt

      
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## test-neuron-nmodl-nvhpc-acc-legacy.txt

      
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## test-neuron-nmodl-nvhpc-acc-shared.txt

      
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## test-neuron-nmodl-nvhpc-omp-legacy.txt

      
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## test-neuron-nmodl-nvhpc-omp.txt

      
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