Skip to content

Instantly share code, notes, and snippets.

@bbpbuildbot
Created October 2, 2023 15:46
Show Gist options
  • Save bbpbuildbot/44af6731e06a065c13aea154981528a2 to your computer and use it in GitHub Desktop.
Save bbpbuildbot/44af6731e06a065c13aea154981528a2 to your computer and use it in GitHub Desktop.
Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/157688 (:white_check_mark:) running on GitHub PR neuronsimulator/nrn#2550.
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1696256656:resolve_secrets Resolving secrets
section_end:1696256656:resolve_secrets section_start:1696256656:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1850233422, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 157688, build ref , job ID 937625
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J937625_PROD_P2160_CP0_C0
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1779423
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J937625_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --ntasks=2 --jobid=1779423 --cpus-per-task=8 --mem=76G
section_end:1696256658:prepare_executor section_start:1696256658:prepare_script Preparing environment
Using git from spack modules
Running on r1i7n30 via bbpv1.epfl.ch...
section_end:1696256664:prepare_script section_start:1696256664:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1696256665:get_sources section_start:1696256665:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=50747 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1696256671:restore_cache section_start:1696256671:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (937624)...
Runtime platform  arch=amd64 os=linux pid=50975 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=937624 responseStatus=200 OK token=64_CrKkp
section_end:1696256672:download_artifacts section_start:1696256672:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937625/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937625/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937625/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937625/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937625/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:119 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:124 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:129 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:137 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:146 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:200 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:205 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:211 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:221 terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937625/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:22 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:36 unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688/J937625_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/src4shhy4h5wh3nrobtdqccsa7gelzez
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779423/ccache
Primary config: /nvme/bbpcihpcproj12/1779423/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 16:24:36 2023
Hits: 0 / 0
Direct: 0 / 0
Preprocessed: 0 / 0
Misses: 0
Direct: 0
Preprocessed: 0
Primary storage:
Hits: 0 / 0
Misses: 0
Cache size (GB): 0.46 / 0.51 (89.29 %)
Files: 13481
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
Concretized
--------------------------------
- pzaavad neuron@develop%oneapi@2022.2.1~caliper~codegenopt+coreneuron~gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] qk754fs ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
- nzx2keq ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] h22zdqe ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+] src4shh ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] glx4cfn ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-bvghnw (external hpe-mpi-2.25.hmpt-qk754fsip5huicz34oar3tlywrt5q2hf)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-h22zdq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-glx4cf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/nmodl-develop-src4sh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/libsonata-report-develop-nzx2ke
==> Installing neuron-develop-pzaavadqt4nxfnf3iywhx4opb2q4dvp6
==> No binary for neuron-develop-pzaavadqt4nxfnf3iywhx4opb2q4dvp6 found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-pzaavadqt4nxfnf3iywhx4opb2q4dvp6
Fetch: 24.59s. Build: 13m 27.37s. Total: 13m 51.96s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_oneapi-2022.2.1-skylake/neuron-develop-pzaava
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be pzaavadqt4nxfnf3iywhx4opb2q4dvp6
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779423/ccache
Primary config: /nvme/bbpcihpcproj12/1779423/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 16:40:50 2023
Hits: 859 / 923 (93.07 %)
Direct: 358 / 927 (38.62 %)
Preprocessed: 501 / 568 (88.20 %)
Misses: 64
Direct: 569
Preprocessed: 67
Uncacheable: 860
Primary storage:
Hits: 1536 / 1853 (82.89 %)
Misses: 317
Cache size (GB): 0.46 / 0.51 (90.45 %)
Files: 13791
Uncacheable:
Autoconf compile/link: 5
Called for linking: 842
Called for preprocessing: 1
Compilation failed: 3
No input file: 8
Preprocessing failed: 1
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1696257651:step_script section_start:1696257651:archive_cache Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:intel:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=79959 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected
Created cache
section_end:1696257672:archive_cache section_start:1696257672:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=80718 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=937625 responseStatus=201 Created token=64_CrKkp
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=80759 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=937625 responseStatus=201 Created token=64_CrKkp
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=80798 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=937625 responseStatus=201 Created token=64_CrKkp
section_end:1696257674:upload_artifacts_on_success section_start:1696257674:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1696257674:cleanup_file_variables Job succeeded
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1696256656:resolve_secrets Resolving secrets
section_end:1696256656:resolve_secrets section_start:1696256656:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor231536231, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 157688, build ref , job ID 937626
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J937626_PROD_P2160_CP2_C2
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1779424
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J937626_PROD_P2160_CP2_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --ntasks=2 --jobid=1779424 --cpus-per-task=8 --mem=76G
section_end:1696256659:prepare_executor section_start:1696256659:prepare_script Preparing environment
Using git from spack modules
Running on r1i7n30 via bbpv1.epfl.ch...
section_end:1696256664:prepare_script section_start:1696256664:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1696256665:get_sources section_start:1696256665:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:shared-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=50806 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1696256671:restore_cache section_start:1696256671:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (937624)...
Runtime platform  arch=amd64 os=linux pid=51037 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=937624 responseStatus=200 OK token=64_QSmsL
section_end:1696256672:download_artifacts section_start:1696256672:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937626/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937626/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937626/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937626/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937626/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:119 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:124 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:129 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:137 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:146 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:200 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:205 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:211 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:221 terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937626/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:22 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:36 unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688/J937626_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/src4shhy4h5wh3nrobtdqccsa7gelzez
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779424/ccache
Primary config: /nvme/bbpcihpcproj12/1779424/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 16:24:36 2023
Hits: 0 / 0
Direct: 0 / 0
Preprocessed: 0 / 0
Misses: 0
Direct: 0
Preprocessed: 0
Primary storage:
Hits: 0 / 0
Misses: 0
Cache size (GB): 0.46 / 0.51 (89.83 %)
Files: 13738
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
Concretized
--------------------------------
- fxkehgm neuron@develop%oneapi@2022.2.1~caliper~codegenopt+coreneuron~gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] qk754fs ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
- nzx2keq ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] h22zdqe ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+] src4shh ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] glx4cfn ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-bvghnw (external hpe-mpi-2.25.hmpt-qk754fsip5huicz34oar3tlywrt5q2hf)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-h22zdq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-glx4cf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/nmodl-develop-src4sh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/libsonata-report-develop-nzx2ke
==> Installing neuron-develop-fxkehgm42wp63ot2irqzbefhlyawaedq
==> No binary for neuron-develop-fxkehgm42wp63ot2irqzbefhlyawaedq found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-fxkehgm42wp63ot2irqzbefhlyawaedq
Fetch: 31.05s. Build: 13m 36.60s. Total: 14m 7.66s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_oneapi-2022.2.1-skylake/neuron-develop-fxkehg
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be fxkehgm42wp63ot2irqzbefhlyawaedq
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779424/ccache
Primary config: /nvme/bbpcihpcproj12/1779424/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 16:41:04 2023
Hits: 859 / 923 (93.07 %)
Direct: 358 / 927 (38.62 %)
Preprocessed: 501 / 568 (88.20 %)
Misses: 64
Direct: 569
Preprocessed: 67
Uncacheable: 878
Primary storage:
Hits: 1536 / 1853 (82.89 %)
Misses: 317
Cache size (GB): 0.46 / 0.51 (89.75 %)
Files: 13856
Cleanups: 1
Uncacheable:
Autoconf compile/link: 5
Called for linking: 860
Called for preprocessing: 1
Compilation failed: 3
No input file: 8
Preprocessing failed: 1
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1696257666:step_script section_start:1696257666:archive_cache Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:intel:shared-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=80449 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Ashared-1-non_protected
Created cache
section_end:1696257686:archive_cache section_start:1696257686:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=83127 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=937626 responseStatus=201 Created token=64_QSmsL
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=83169 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=937626 responseStatus=201 Created token=64_QSmsL
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=83247 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=937626 responseStatus=201 Created token=64_QSmsL
section_end:1696257688:upload_artifacts_on_success section_start:1696257688:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1696257689:cleanup_file_variables Job succeeded
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1696256657:resolve_secrets Resolving secrets
section_end:1696256657:resolve_secrets section_start:1696256657:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor888712792, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 157688, build ref , job ID 937627
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J937627_PROD_P2160_CP3_C4
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1779425
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J937627_PROD_P2160_CP3_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --ntasks=2 --jobid=1779425 --cpus-per-task=8 --mem=76G
section_end:1696256658:prepare_executor section_start:1696256658:prepare_script Preparing environment
Using git from spack modules
Running on r1i4n16 via bbpv1.epfl.ch...
section_end:1696256664:prepare_script section_start:1696256664:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1696256665:get_sources section_start:1696256665:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=152404 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1696256671:restore_cache section_start:1696256671:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (937624)...
Runtime platform  arch=amd64 os=linux pid=153623 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=937624 responseStatus=200 OK token=64_3KTxL
section_end:1696256672:download_artifacts section_start:1696256672:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937627/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937627/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937627/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937627/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937627/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:119 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:124 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:129 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:137 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:146 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:200 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:205 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:211 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:221 terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937627/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:22 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:36 unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688/J937627_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/src4shhy4h5wh3nrobtdqccsa7gelzez
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779425/ccache
Primary config: /nvme/bbpcihpcproj12/1779425/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 16:24:36 2023
Hits: 0 / 0
Direct: 0 / 0
Preprocessed: 0 / 0
Misses: 0
Direct: 0
Preprocessed: 0
Primary storage:
Hits: 0 / 0
Misses: 0
Cache size (GB): 0.47 / 0.51 (91.42 %)
Files: 15658
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
Concretized
--------------------------------
- rzocmtk neuron@develop%nvhpc@23.1~caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] qk754fs ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
- nzx2keq ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] h22zdqe ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+] src4shh ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] glx4cfn ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-bvghnw (external hpe-mpi-2.25.hmpt-qk754fsip5huicz34oar3tlywrt5q2hf)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-h22zdq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-glx4cf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/nmodl-develop-src4sh
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/libsonata-report-develop-nzx2ke
==> Installing neuron-develop-rzocmtkmwyavdfasregl5kftsrreqg2h
==> No binary for neuron-develop-rzocmtkmwyavdfasregl5kftsrreqg2h found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-rzocmtkmwyavdfasregl5kftsrreqg2h
Fetch: 21.83s. Build: 1h 49.23s. Total: 1h 1m 11.05s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_nvhpc-23.1-skylake/neuron-develop-rzocmt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be rzocmtkmwyavdfasregl5kftsrreqg2h
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779425/ccache
Primary config: /nvme/bbpcihpcproj12/1779425/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 17:28:30 2023
Hits: 859 / 972 (88.37 %)
Direct: 359 / 926 (38.77 %)
Preprocessed: 500 / 566 (88.34 %)
Misses: 113
Direct: 567
Preprocessed: 66
Uncacheable: 109
Primary storage:
Hits: 1536 / 1851 (82.98 %)
Misses: 315
Cache size (GB): 0.46 / 0.51 (90.12 %)
Files: 15367
Cleanups: 2
Uncacheable:
Autoconf compile/link: 5
Called for linking: 90
Called for preprocessing: 2
Compilation failed: 3
No input file: 8
Preprocessing failed: 1
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1696260513:step_script section_start:1696260513:archive_cache Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=225887 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected
Created cache
section_end:1696260541:archive_cache section_start:1696260541:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=227072 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=937627 responseStatus=201 Created token=64_3KTxL
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=227131 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=937627 responseStatus=201 Created token=64_3KTxL
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=227177 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=937627 responseStatus=201 Created token=64_3KTxL
section_end:1696260543:upload_artifacts_on_success section_start:1696260543:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1696260544:cleanup_file_variables Job succeeded
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1696256657:resolve_secrets Resolving secrets
section_end:1696256657:resolve_secrets section_start:1696256657:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1620755350, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 157688, build ref , job ID 937628
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J937628_PROD_P2160_CP4_C5
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1779426
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J937628_PROD_P2160_CP4_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --ntasks=2 --jobid=1779426 --cpus-per-task=8 --mem=76G
section_end:1696256659:prepare_executor section_start:1696256659:prepare_script Preparing environment
Using git from spack modules
Running on r1i4n16 via bbpv1.epfl.ch...
section_end:1696256664:prepare_script section_start:1696256664:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1696256665:get_sources section_start:1696256665:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=152450 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1696256671:restore_cache section_start:1696256671:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (937624)...
Runtime platform  arch=amd64 os=linux pid=153682 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=937624 responseStatus=200 OK token=64_Dyy_X
section_end:1696256672:download_artifacts section_start:1696256672:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937628/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937628/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937628/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937628/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937628/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:119 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:124 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:129 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:137 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:146 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:200 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:205 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:211 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:221 terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937628/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:22 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:36 unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688/J937628_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/src4shhy4h5wh3nrobtdqccsa7gelzez
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779426/ccache
Primary config: /nvme/bbpcihpcproj12/1779426/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 16:24:36 2023
Hits: 0 / 0
Direct: 0 / 0
Preprocessed: 0 / 0
Misses: 0
Direct: 0
Preprocessed: 0
Primary storage:
Hits: 0 / 0
Misses: 0
Cache size (GB): 0.47 / 0.51 (91.66 %)
Files: 16879
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
Concretized
--------------------------------
- g2jmfh6 neuron@develop%nvhpc@23.1~caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] qk754fs ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
- nzx2keq ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] h22zdqe ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+] src4shh ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] glx4cfn ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-bvghnw (external hpe-mpi-2.25.hmpt-qk754fsip5huicz34oar3tlywrt5q2hf)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-h22zdq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-glx4cf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/nmodl-develop-src4sh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/libsonata-report-develop-nzx2ke
==> Installing neuron-develop-g2jmfh6lrrsgscqjkazxauwnju7a3i7y
==> No binary for neuron-develop-g2jmfh6lrrsgscqjkazxauwnju7a3i7y found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-g2jmfh6lrrsgscqjkazxauwnju7a3i7y
Fetch: 23.81s. Build: 1h 3m 11.17s. Total: 1h 3m 34.98s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_nvhpc-23.1-skylake/neuron-develop-g2jmfh
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be g2jmfh6lrrsgscqjkazxauwnju7a3i7y
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779426/ccache
Primary config: /nvme/bbpcihpcproj12/1779426/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 17:30:44 2023
Hits: 859 / 1040 (82.60 %)
Direct: 359 / 926 (38.77 %)
Preprocessed: 500 / 566 (88.34 %)
Misses: 181
Direct: 567
Preprocessed: 66
Uncacheable: 118
Primary storage:
Hits: 1536 / 1851 (82.98 %)
Misses: 315
Cache size (GB): 0.46 / 0.51 (90.38 %)
Files: 16665
Cleanups: 3
Uncacheable:
Autoconf compile/link: 5
Called for linking: 99
Called for preprocessing: 2
Compilation failed: 3
No input file: 8
Preprocessing failed: 1
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1696260651:step_script section_start:1696260651:archive_cache Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=231177 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Ashared-1-non_protected
Created cache
section_end:1696260695:archive_cache section_start:1696260695:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=232368 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=937628 responseStatus=201 Created token=64_Dyy_X
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=232405 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=937628 responseStatus=201 Created token=64_Dyy_X
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=232447 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=937628 responseStatus=201 Created token=64_Dyy_X
section_end:1696260697:upload_artifacts_on_success section_start:1696260697:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1696260698:cleanup_file_variables Job succeeded
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1696256658:resolve_secrets Resolving secrets
section_end:1696256658:resolve_secrets section_start:1696256658:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor781960118, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 157688, build ref , job ID 937629
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J937629_PROD_P2160_CP7_C8
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1779427
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J937629_PROD_P2160_CP7_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --ntasks=2 --jobid=1779427 --cpus-per-task=8 --mem=76G
section_end:1696256660:prepare_executor section_start:1696256660:prepare_script Preparing environment
Using git from spack modules
Running on r1i4n16 via bbpv1.epfl.ch...
section_end:1696256662:prepare_script section_start:1696256662:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1696256662:get_sources section_start:1696256662:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=151983 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1696256668:restore_cache section_start:1696256668:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (937624)...
Runtime platform  arch=amd64 os=linux pid=152610 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=937624 responseStatus=200 OK token=64_Jt9AB
section_end:1696256669:download_artifacts section_start:1696256669:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937629/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937629/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937629/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937629/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937629/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:119 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:124 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:129 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:137 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:146 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:200 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:205 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:211 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:221 terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937629/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:22 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:36 unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688/J937629_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/src4shhy4h5wh3nrobtdqccsa7gelzez
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779427/ccache
Primary config: /nvme/bbpcihpcproj12/1779427/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 16:24:33 2023
Hits: 0 / 0
Direct: 0 / 0
Preprocessed: 0 / 0
Misses: 0
Direct: 0
Preprocessed: 0
Primary storage:
Hits: 0 / 0
Misses: 0
Cache size (GB): 0.45 / 0.51 (88.75 %)
Files: 16224
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^caliper+cuda cuda_arch=70
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
Concretized
--------------------------------
- svzu5wa neuron@develop%nvhpc@23.1+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^] jdv6mlw ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake
[^] 5floujd ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 7yt5klx ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake
[^] zttduab ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^] ja6blio ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^] 3gsobub ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] qk754fs ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
- nzx2keq ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] h22zdqe ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+] src4shh ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] glx4cfn ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-bvghnw (external hpe-mpi-2.25.hmpt-qk754fsip5huicz34oar3tlywrt5q2hf)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
[+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-5flouj
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-h22zdq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
==> Installing libsonata-report-develop-nzx2keqp7jfuumndiicth4arkgyjszzo
==> No binary for libsonata-report-develop-nzx2keqp7jfuumndiicth4arkgyjszzo found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-develop-nzx2keqp7jfuumndiicth4arkgyjszzo
Fetch: 2.67s. Build: 5.15s. Total: 7.82s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/libsonata-report-develop-nzx2ke
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-glx4cf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-jdv6ml
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/nmodl-develop-src4sh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
==> Installing neuron-develop-svzu5wawbg6akalv4hdeqijs7wgzh2wm
==> No binary for neuron-develop-svzu5wawbg6akalv4hdeqijs7wgzh2wm found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-svzu5wawbg6akalv4hdeqijs7wgzh2wm
Fetch: 28.21s. Build: 1h 4m 36.63s. Total: 1h 5m 4.84s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_nvhpc-23.1-skylake/neuron-develop-svzu5w
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be svzu5wawbg6akalv4hdeqijs7wgzh2wm
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779427/ccache
Primary config: /nvme/bbpcihpcproj12/1779427/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 17:32:18 2023
Hits: 881 / 1004 (87.75 %)
Direct: 381 / 950 (40.11 %)
Preprocessed: 500 / 568 (88.03 %)
Misses: 123
Direct: 569
Preprocessed: 68
Uncacheable: 134
Primary storage:
Hits: 1580 / 1899 (83.20 %)
Misses: 319
Cache size (GB): 0.46 / 0.51 (89.96 %)
Files: 16600
Uncacheable:
Autoconf compile/link: 5
Called for linking: 105
Called for preprocessing: 2
Compilation failed: 3
No input file: 18
Preprocessing failed: 1
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1696260739:step_script section_start:1696260739:archive_cache Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=233342 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected
Created cache
section_end:1696260798:archive_cache section_start:1696260798:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=233532 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=937629 responseStatus=201 Created token=64_Jt9AB
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=233581 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=937629 responseStatus=201 Created token=64_Jt9AB
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=233625 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=937629 responseStatus=201 Created token=64_Jt9AB
section_end:1696260806:upload_artifacts_on_success section_start:1696260806:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1696260815:cleanup_file_variables Job succeeded
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1696256658:resolve_secrets Resolving secrets
section_end:1696256658:resolve_secrets section_start:1696256658:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1869006943, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 157688, build ref , job ID 937630
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J937630_PROD_P2160_CP8_C9
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1779428
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J937630_PROD_P2160_CP8_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --ntasks=2 --jobid=1779428 --cpus-per-task=8 --mem=76G
section_end:1696256660:prepare_executor section_start:1696256660:prepare_script Preparing environment
Using git from spack modules
Running on r1i4n16 via bbpv1.epfl.ch...
section_end:1696256662:prepare_script section_start:1696256662:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1696256662:get_sources section_start:1696256662:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=151957 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1696256668:restore_cache section_start:1696256668:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (937624)...
Runtime platform  arch=amd64 os=linux pid=152648 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=937624 responseStatus=200 OK token=64_Ke4Cs
section_end:1696256669:download_artifacts section_start:1696256669:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937630/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937630/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937630/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937630/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937630/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:119 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:124 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:129 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:137 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:146 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:200 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:205 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:211 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:221 terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937630/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:22 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:36 unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688/J937630_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/src4shhy4h5wh3nrobtdqccsa7gelzez
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779428/ccache
Primary config: /nvme/bbpcihpcproj12/1779428/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 16:24:33 2023
Hits: 0 / 0
Direct: 0 / 0
Preprocessed: 0 / 0
Misses: 0
Direct: 0
Preprocessed: 0
Primary storage:
Hits: 0 / 0
Misses: 0
Cache size (GB): 0.45 / 0.51 (88.54 %)
Files: 15667
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^caliper+cuda cuda_arch=70
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
Concretized
--------------------------------
- p5hd2ji neuron@develop%nvhpc@23.1+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^] jdv6mlw ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake
[^] 5floujd ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 7yt5klx ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake
[^] zttduab ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^] ja6blio ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^] 3gsobub ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] qk754fs ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
- nzx2keq ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] h22zdqe ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+] src4shh ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] glx4cfn ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-bvghnw (external hpe-mpi-2.25.hmpt-qk754fsip5huicz34oar3tlywrt5q2hf)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
[+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-5flouj
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-h22zdq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-glx4cf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-jdv6ml
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/nmodl-develop-src4sh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/libsonata-report-develop-nzx2ke
==> Installing neuron-develop-p5hd2jigzh2wz5cy2hykzcncybimgx7k
==> No binary for neuron-develop-p5hd2jigzh2wz5cy2hykzcncybimgx7k found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-p5hd2jigzh2wz5cy2hykzcncybimgx7k
Fetch: 23.74s. Build: 1h 3m 51.86s. Total: 1h 4m 15.60s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_nvhpc-23.1-skylake/neuron-develop-p5hd2j
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be p5hd2jigzh2wz5cy2hykzcncybimgx7k
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779428/ccache
Primary config: /nvme/bbpcihpcproj12/1779428/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 17:31:28 2023
Hits: 859 / 982 (87.47 %)
Direct: 360 / 928 (38.79 %)
Preprocessed: 499 / 567 (88.01 %)
Misses: 123
Direct: 568
Preprocessed: 68
Uncacheable: 111
Primary storage:
Hits: 1537 / 1855 (82.86 %)
Misses: 318
Cache size (GB): 0.45 / 0.51 (88.50 %)
Files: 15746
Cleanups: 1
Uncacheable:
Autoconf compile/link: 5
Called for linking: 92
Called for preprocessing: 2
Compilation failed: 3
No input file: 8
Preprocessing failed: 1
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1696260690:step_script section_start:1696260690:archive_cache Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=232272 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected
Created cache
section_end:1696260733:archive_cache section_start:1696260733:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=232897 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=937630 responseStatus=201 Created token=64_Ke4Cs
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=232933 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=937630 responseStatus=201 Created token=64_Ke4Cs
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=232974 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=937630 responseStatus=201 Created token=64_Ke4Cs
section_end:1696260734:upload_artifacts_on_success section_start:1696260734:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1696260736:cleanup_file_variables Job succeeded
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1696256344:resolve_secrets Resolving secrets
section_end:1696256344:resolve_secrets section_start:1696256344:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor560987993, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 157688, build ref , job ID 937624
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J937624_PROD_P2160_CP0_C0
Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1779369
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J937624_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688 --ntasks=2 --jobid=1779369 --cpus-per-task=8 --mem=76G
section_end:1696256345:prepare_executor section_start:1696256345:prepare_script Preparing environment
Using git from spack modules
Running on r1i4n20 via bbpv1.epfl.ch...
section_end:1696256348:prepare_script section_start:1696256348:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1696256349:get_sources section_start:1696256349:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:nmodl-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=139616 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1696256354:restore_cache section_start:1696256354:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for spack_setup (937622)...
Runtime platform  arch=amd64 os=linux pid=139725 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=937622 responseStatus=200 OK token=64_AQ1pz
section_end:1696256355:download_artifacts section_start:1696256355:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937624/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937624/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937624/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937624/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937624/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:119 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:124 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:129 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:137 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:146 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:200 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:205 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:211 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:221 terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937624/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:22 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/J937622/spack/etc/spack/defaults/concretizer.yaml:36 unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P157688/J937624_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install nmodl%gcc ~legacy-unit
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779369/ccache
Primary config: /nvme/bbpcihpcproj12/1779369/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 16:19:19 2023
Hits: 0 / 0
Direct: 0 / 0
Preprocessed: 0 / 0
Misses: 0
Direct: 0
Preprocessed: 0
Primary storage:
Hits: 0 / 0
Misses: 0
Cache size (GB): 0.44 / 0.51 (85.39 %)
Files: 1028
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- nmodl%gcc~legacy-unit
Concretized
--------------------------------
- src4shh nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] d7dkmvv ^py-flit-core@3.7.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] zbqiukk ^py-setuptools-scm@7.0.5%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] ihcuyox ^py-typing-extensions@4.3.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-flit-core-3.7.1-d7dkmv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-typing-extensions-4.3.0-ihcuyo
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-scm-7.0.5-zbqiuk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
==> Installing nmodl-develop-src4shhy4h5wh3nrobtdqccsa7gelzez
==> No binary for nmodl-develop-src4shhy4h5wh3nrobtdqccsa7gelzez found: installing from source
==> No patches needed for nmodl
==> nmodl: Executing phase: 'cmake'
==> nmodl: Executing phase: 'build'
==> nmodl: Executing phase: 'install'
==> nmodl: Successfully installed nmodl-develop-src4shhy4h5wh3nrobtdqccsa7gelzez
Fetch: 59.75s. Build: 1m 59.76s. Total: 2m 59.51s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P157688/software/install_gcc-12.2.0-skylake/nmodl-develop-src4sh
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be src4shhy4h5wh3nrobtdqccsa7gelzez
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1779369/ccache
Primary config: /nvme/bbpcihpcproj12/1779369/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Oct 2 16:23:51 2023
Hits: 129 / 131 (98.47 %)
Direct: 27 / 131 (20.61 %)
Preprocessed: 102 / 104 (98.08 %)
Misses: 2
Direct: 104
Preprocessed: 2
Uncacheable: 25
Primary storage:
Hits: 156 / 262 (59.54 %)
Misses: 106
Cache size (GB): 0.44 / 0.51 (85.41 %)
Files: 1032
Uncacheable:
Called for linking: 24
No input file: 1
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1696256632:step_script section_start:1696256632:archive_cache Saving cache for successful job
Using git from spack modules
Creating cache build:nmodl-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=142007 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected
Created cache
section_end:1696256652:archive_cache section_start:1696256652:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=142137 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=937624 responseStatus=201 Created token=64_AQ1pz
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=142173 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=937624 responseStatus=201 Created token=64_AQ1pz
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=142213 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=937624 responseStatus=201 Created token=64_AQ1pz
section_end:1696256653:upload_artifacts_on_success section_start:1696256653:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1696256654:cleanup_file_variables Job succeeded
This file has been truncated, but you can view the full file.
Running with gitlab-runner 15.4.0 (43b2dc3d)
 on macos-arm64 vGzz-bdp
section_start:1696256237:resolve_secrets Resolving secrets
section_end:1696256237:resolve_secrets section_start:1696256237:prepare_executor Preparing the "shell" executor
Using Shell executor...
section_end:1696256237:prepare_executor section_start:1696256237:prepare_script Preparing environment
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1696256237:prepare_script section_start:1696256237:get_sources Getting source from Git repository
Fetching changes with git depth set to 20...
Initialized empty Git repository in /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/.git/
Created fresh repository.
Checking out eab0e729 as tristan0x/sonarsource...
Skipping Git submodules setup
section_end:1696256239:get_sources section_start:1696256239:restore_cache Restoring cache
Checking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-tristan0x/sonarsource-1-non_protected...
Runtime platform  arch=arm64 os=darwin pid=65646 revision=43b2dc3d version=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.
Successfully extracted cache
section_end:1696256246:restore_cache section_start:1696256246:step_script Executing "step_script" stage of the job script
$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command
$ real_python=$(python3 resolve_shim.py)
$ echo "python3=$(command -v python3) is really ${real_python}"
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.8/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv
$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (22.2.2)
Collecting pip
Using cached pip-23.2.1-py3-none-any.whl (2.1 MB)
Collecting wheel
Using cached wheel-0.41.2-py3-none-any.whl (64 kB)
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (65.4.1)
Collecting setuptools
Using cached setuptools-68.2.2-py3-none-any.whl (807 kB)
Collecting setuptools_scm
Using cached setuptools_scm-8.0.3-py3-none-any.whl (41 kB)
Collecting scikit-build
Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB)
Collecting matplotlib
Using cached matplotlib-3.8.0-cp310-cp310-macosx_11_0_arm64.whl (7.5 MB)
Collecting bokeh<3
Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB)
Collecting ipython
Using cached ipython-8.16.1-py3-none-any.whl (806 kB)
Collecting cython<3
Using cached Cython-0.29.36-py2.py3-none-any.whl (988 kB)
Collecting packaging
Using cached packaging-23.2-py3-none-any.whl (53 kB)
Collecting pytest
Using cached pytest-7.4.2-py3-none-any.whl (324 kB)
Collecting pytest-cov
Using cached pytest_cov-4.1.0-py3-none-any.whl (21 kB)
Collecting mpi4py
Using cached mpi4py-3.1.4-cp310-cp310-macosx_12_0_arm64.whl
Collecting numpy
Using cached numpy-1.26.0-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB)
Collecting find_libpython
Using cached find_libpython-0.3.0-py3-none-any.whl (8.5 kB)
Collecting tomli>=1
Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Collecting typing-extensions
Using cached typing_extensions-4.8.0-py3-none-any.whl (31 kB)
Collecting distro
Using cached distro-1.8.0-py3-none-any.whl (20 kB)
Collecting kiwisolver>=1.0.1
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB)
Collecting python-dateutil>=2.7
Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
Collecting contourpy>=1.0.1
Using cached contourpy-1.1.1-cp310-cp310-macosx_11_0_arm64.whl (232 kB)
Collecting pillow>=6.2.0
Using cached Pillow-10.0.1-cp310-cp310-macosx_11_0_arm64.whl (3.3 MB)
Collecting cycler>=0.10
Using cached cycler-0.12.0-py3-none-any.whl (8.2 kB)
Collecting pyparsing>=2.3.1
Using cached pyparsing-3.1.1-py3-none-any.whl (103 kB)
Collecting fonttools>=4.22.0
Using cached fonttools-4.43.0-cp310-cp310-macosx_10_9_universal2.whl (2.7 MB)
Collecting Jinja2>=2.9
Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB)
Collecting tornado>=5.1
Using cached tornado-6.3.3-cp38-abi3-macosx_10_9_universal2.whl (425 kB)
Collecting PyYAML>=3.10
Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl (169 kB)
Collecting stack-data
Using cached stack_data-0.6.3-py3-none-any.whl (24 kB)
Collecting pexpect>4.3
Using cached pexpect-4.8.0-py2.py3-none-any.whl (59 kB)
Collecting decorator
Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB)
Collecting exceptiongroup
Using cached exceptiongroup-1.1.3-py3-none-any.whl (14 kB)
Collecting pickleshare
Using cached pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB)
Collecting jedi>=0.16
Using cached jedi-0.19.1-py2.py3-none-any.whl (1.6 MB)
Collecting backcall
Using cached backcall-0.2.0-py2.py3-none-any.whl (11 kB)
Collecting pygments>=2.4.0
Using cached Pygments-2.16.1-py3-none-any.whl (1.2 MB)
Collecting matplotlib-inline
Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB)
Collecting prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30
Using cached prompt_toolkit-3.0.39-py3-none-any.whl (385 kB)
Collecting traitlets>=5
Using cached traitlets-5.10.1-py3-none-any.whl (122 kB)
Collecting appnope
Using cached appnope-0.1.3-py2.py3-none-any.whl (4.4 kB)
Collecting pluggy<2.0,>=0.12
Using cached pluggy-1.3.0-py3-none-any.whl (18 kB)
Collecting iniconfig
Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Collecting coverage[toml]>=5.2.1
Using cached coverage-7.3.1-cp310-cp310-macosx_11_0_arm64.whl (201 kB)
Collecting parso<0.9.0,>=0.8.3
Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB)
Collecting MarkupSafe>=2.0
Using cached MarkupSafe-2.1.3-cp310-cp310-macosx_10_9_universal2.whl (17 kB)
Collecting ptyprocess>=0.5
Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Collecting wcwidth
Using cached wcwidth-0.2.8-py2.py3-none-any.whl (31 kB)
Collecting six>=1.5
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting executing>=1.2.0
Using cached executing-2.0.0-py2.py3-none-any.whl (24 kB)
Collecting pure-eval
Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB)
Collecting asttokens>=2.1.0
Using cached asttokens-2.4.0-py2.py3-none-any.whl (27 kB)
Installing collected packages: wcwidth, pure-eval, ptyprocess, pickleshare, find_libpython, executing, backcall, appnope, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython
Attempting uninstall: setuptools
Found existing installation: setuptools 65.4.1
Uninstalling setuptools-65.4.1:
Successfully uninstalled setuptools-65.4.1
Attempting uninstall: pip
Found existing installation: pip 22.2.2
Uninstalling pip-22.2.2:
Successfully uninstalled pip-22.2.2
Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.3 PyYAML-6.0.1 appnope-0.1.3 asttokens-2.4.0 backcall-0.2.0 bokeh-2.4.3 contourpy-1.1.1 coverage-7.3.1 cycler-0.12.0 cython-0.29.36 decorator-5.1.1 distro-1.8.0 exceptiongroup-1.1.3 executing-2.0.0 find_libpython-0.3.0 fonttools-4.43.0 iniconfig-2.0.0 ipython-8.16.1 jedi-0.19.1 kiwisolver-1.4.5 matplotlib-3.8.0 matplotlib-inline-0.1.6 mpi4py-3.1.4 numpy-1.26.0 packaging-23.2 parso-0.8.3 pexpect-4.8.0 pickleshare-0.7.5 pillow-10.0.1 pip-23.2.1 pluggy-1.3.0 prompt-toolkit-3.0.39 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.16.1 pyparsing-3.1.1 pytest-7.4.2 pytest-cov-4.1.0 python-dateutil-2.8.2 scikit-build-0.17.6 setuptools-68.2.2 setuptools_scm-8.0.3 six-1.16.0 stack-data-0.6.3 tomli-2.0.1 tornado-6.3.3 traitlets-5.10.1 typing-extensions-4.8.0 wcwidth-0.2.8 wheel-0.41.2
$ git submodule update --init --recursive --force --depth 1 -- external/nmodl
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl'
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/nmodl'...
From https://github.com/BlueBrain/nmodl
* branch f180a2d45aabc0d8630b2a7fc8d90c1d8fd07e26 -> FETCH_HEAD
Submodule path 'external/nmodl': checked out 'f180a2d45aabc0d8630b2a7fc8d90c1d8fd07e26'
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions'
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2'
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11'
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen'
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt'
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json'
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11'
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog'
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'...
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/nmodl/ext/catch2'...
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/nmodl/ext/cli11'...
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/nmodl/ext/eigen'...
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/nmodl/ext/fmt'...
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/nmodl/ext/json'...
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/nmodl/ext/pybind11'...
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/nmodl/ext/spdlog'...
From https://github.com/BlueBrain/hpc-coding-conventions
* branch f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d'
From https://github.com/catchorg/Catch2
* branch 3f0283de7a9c43200033da996ff9093be3ac84dc -> FETCH_HEAD
Submodule path 'external/nmodl/ext/catch2': checked out '3f0283de7a9c43200033da996ff9093be3ac84dc'
From https://github.com/CLIUtils/CLI11
* branch b9be5b9444772324459989177108a6a65b8b2769 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/cli11': checked out 'b9be5b9444772324459989177108a6a65b8b2769'
From https://gitlab.com/libeigen/eigen
* branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
From https://github.com/fmtlib/fmt
* branch a33701196adfad74917046096bf5a2aa0ab0bb50 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/fmt': checked out 'a33701196adfad74917046096bf5a2aa0ab0bb50'
From https://github.com/nlohmann/json
* branch 4f8fba14066156b73f1189a2b8bd568bde5284c5 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/json': checked out '4f8fba14066156b73f1189a2b8bd568bde5284c5'
From https://github.com/pybind/pybind11
* branch 914c06fb252b6cc3727d0eedab6736e88a3fcb01 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/pybind11': checked out '914c06fb252b6cc3727d0eedab6736e88a3fcb01'
From https://github.com/gabime/spdlog
* branch 76fb40d95455f249bd70824ecfcae7a8f0930fa3 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/spdlog': checked out '76fb40d95455f249bd70824ecfcae7a8f0930fa3'
$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt
Requirement already satisfied: Jinja2>=2.9.3 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 1)) (3.1.2)
Requirement already satisfied: PyYAML>=3.13 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 2)) (6.0.1)
Requirement already satisfied: pytest in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 3)) (7.4.2)
Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 4)) (4.1.0)
Collecting sympy (from -r external/nmodl/requirements.txt (line 5))
Using cached sympy-1.12-py3-none-any.whl (5.7 MB)
Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 6)) (1.26.0)
Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 7)) (0.3.0)
Requirement already satisfied: scikit-build in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 8)) (0.17.6)
Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 1)) (2.1.3)
Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.0)
Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (23.2)
Requirement already satisfied: pluggy<2.0,>=0.12 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.3.0)
Requirement already satisfied: exceptiongroup>=1.0.0rc8 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.1.3)
Requirement already satisfied: tomli>=1.0.0 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.1)
Requirement already satisfied: coverage[toml]>=5.2.1 in ./venv/lib/python3.10/site-packages (from pytest-cov->-r external/nmodl/requirements.txt (line 4)) (7.3.1)
Collecting mpmath>=0.19 (from sympy->-r external/nmodl/requirements.txt (line 5))
Using cached mpmath-1.3.0-py3-none-any.whl (536 kB)
Requirement already satisfied: distro in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (1.8.0)
Requirement already satisfied: setuptools>=42.0.0 in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (68.2.2)
Requirement already satisfied: wheel>=0.32.0 in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (0.41.2)
Installing collected packages: mpmath, sympy
Successfully installed mpmath-1.3.0 sympy-1.12
$ source ./venv/bin/activate
$ export PYTHON=${PWD}/venv/bin/python
$ ${PYTHON} --version
Python 3.10.8
$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"
$ export CXX=${CXX:-g++}
$ export CC=${CC:-gcc}
$ brew install flex bison
Warning: flex 2.6.4_2 is already installed and up-to-date.
To reinstall 2.6.4_2, run:
brew reinstall flex
Warning: bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
brew reinstall bison
$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"
$ export INSTALL_DIR=$(pwd)/install
$ echo $LANG
$ echo $LC_ALL
$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")
$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'
$ cmake_args=(-G Ninja)
$ if [[ -n "${sanitizer}" ]]; then
$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))
$ fi
$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})
$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")
$ mkdir build && cd build
$ echo "Building with ${cmake_args[@]}"
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/venv/bin/python
$ cmake .. "${cmake_args[@]}"
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- Sub-module : missing external/coding-conventions : running git submodule update --init
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions'
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/coding-conventions'...
Submodule path 'external/coding-conventions': checked out '3d157f9c8ea94d196a825aaa7f523265e360dc4b'
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123'
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/Random123'...
From https://github.com/BlueBrain/Random123
* branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1'
-- 3rd party project: using Random123 from "external/Random123"
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2")
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6")
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1")
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Detected OpenMPI 4.1.4
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Building CoreNEURON
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11'
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/CLI11'...
From https://github.com/CLIUtils/CLI11
* branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2'
-- 3rd party project: using CLI11 from "external/CLI11"
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)")
-- Found Perl: /usr/bin/perl (found version "5.30.3")
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH)
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/nmodl
-- CHECKING FOR FLEX/BISON
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0")
-- Adding Flex include path as : /opt/homebrew/opt/flex/include/
-- NMODL_TEST_FORMATTING: OFF
-- NMODL_GIT_HOOKS: OFF
-- NMODL_GIT_COMMIT_HOOKS:
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg
-- NMODL_STATIC_ANALYSIS: OFF
-- NMODL_TEST_STATIC_ANALYSIS: OFF
-- 3rd party project: using eigen from "ext/eigen"
-- 3rd party project: using fmt from "ext/fmt"
-- Module support is disabled.
-- Version: 9.1.0
-- Build type: Custom
-- CXX_STANDARD: 17
-- Required features: cxx_variadic_templates
-- 3rd party project: using json from "ext/json"
-- Using the single-header code from /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/nmodl/ext/json/single_include/
-- 3rd party project: using pybind11 from "ext/pybind11"
-- pybind11 v2.9.2
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/venv/bin/python (found version "3.10.8")
-- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- 3rd party project: using spdlog from "ext/spdlog"
-- Build spdlog: 1.10.0
-- Build type: Custom
-- CHECKING FOR PYTHON
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.8", minimum required is "3.8")
--
-- Configured NMODL 0.0 (f180a2d 2023-09-21 17:15:39 +0200)
--
-- You can now build NMODL using:
-- cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------------+--------------------------------------------------------
-- Target | Description
-- --------------------+--------------------------------------------------------
-- test | Run unit tests
-- install | Will install NMODL to: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install
-- --------------------+--------------------------------------------------------
-- Build option | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER | /usr/bin/g++
-- COMPILE FLAGS | -O1 -g
-- Build Type | Custom
-- Legacy Units | OFF
-- Python Bindings | ON
-- Flex | /opt/homebrew/opt/flex/bin/flex
-- Bison | /opt/homebrew/opt/bison/bin/bison
-- Python | /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/venv/bin/python
-- Linked against | TRUE
-- --------------------+--------------------------------------------------------
-- See documentation : https://github.com/BlueBrain/nmodl/
-- --------------------+--------------------------------------------------------
--
--
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
-- Build option | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER | /usr/bin/g++
-- COMPILE FLAGS | -O1 -g -std=c++17 -DCORENEURON_BUILD -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -DCORENEURON_USE_LEGACY_UNITS=0 -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type | SHARED
-- MPI | ON
-- DYNAMIC | OFF
-- INC | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include
-- OpenMP | ON
-- Use legacy units | OFF
-- NMODL PATH | /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/bin/nmodl
-- NMODL FLAGS |
-- GPU Support | OFF
-- Auto Timeout | ON
-- Wrap exp() | OFF
-- SplayTree Queue | ON
-- NetReceive Buffer | ON
-- Caliper | OFF
-- Likwid | OFF
-- Unit Tests | ON
-- Reporting | OFF
-- --------------------+--------------------------------------------------------
--
Extracting link flags from target 'nrngnu', beware that this can be fragile. Got:
Extracting link flags from target 'sparse13', beware that this can be fragile. Got:
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got:
Generating link flags from path /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib
Generating link flags from path /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
-- Sub-module : missing /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/catch2 : running git submodule update --init
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2'
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/catch2'...
Submodule path 'external/catch2': checked out 'c4e3767e265808590986d5db6ca1b5532a7f3d13'
-- Found Python module 'pytest' with version(s): 7.4.2
-- Found Python module 'pytest_cov' with version(s): 4.1.0
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata'
Cloning into '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/test/rxd/testdata'...
Submodule path 'test/rxd/testdata': checked out 'e531eaa704108fd1c880905484a28c15e5402e59'
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.4
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.4
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- Could NOT find OpenSSL, try to set the path to OpenSSL root folder in the system variable OPENSSL_ROOT_DIR (missing: OPENSSL_CRYPTO_LIBRARY OPENSSL_INCLUDE_DIR)
-- Skipping tqperf test as OpenSSL package not found
--
-- Configured NEURON 9.0.0
--
-- You can now build NEURON using:
-- cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
-- Target | Description
-- --------------+--------------------------------------------------------------
-- install | Will install NEURON to: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install
-- | Change the install location of NEURON using:
-- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
-- Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER | /usr/bin/gcc
-- CXX COMPILER | /usr/bin/g++
-- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast)
-- COMPILE FLAGS | -O1 -g -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Shared | ON
-- Default units | modern units (2019 nist constants)
-- MPI | ON
-- DYNAMIC | OFF
-- INC | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include
-- LIB | /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib
-- Python | ON
-- DYNAMIC | OFF
-- MODULE | ON
-- python3.10 (default)
-- EXE | /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/venv/bin/python
-- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10
-- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D | OFF
-- Interviews | OFF
-- CoreNEURON | ON
-- PATH | /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/coreneuron
-- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib
-- Legacy Units| OFF
-- Tests | ON
-- --------------+--------------------------------------------------------------
-- See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
--
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build
$ ccache -z
Statistics zeroed
$ ccache -vs 2>/dev/null
Cache directory: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/ccache
Config file: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf
Stats updated: Mon Oct 2 16:18:29 2023
Local storage:
Cache size (GB): 0.78 / 5.00 (15.66%)
Files: 6486
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ cmake --build . --parallel
[0/2] Re-checking globbed directories...
[1/1831] Generating share/nrn/demo/d3init.hoc
[2/1831] Generating share/nrn/demo/cycle.hoc
[3/1831] Generating share/nrn/demo/demo.ses
[4/1831] Generating share/nrn/demo/demo.hoc
[5/1831] Generating share/nrn/demo/dend3.ses
[6/1831] Generating share/nrn/demo/dend3/control.hoc
[7/1831] Generating share/nrn/demo/dend3/dend3.nrn
[8/1831] Generating share/nrn/demo/dend3/syn3.hoc
[9/1831] Generating share/nrn/demo/dynclamp.hoc
[10/1831] Generating share/nrn/demo/dynchan.ses
[11/1831] Generating share/nrn/demo/dynclamp.ses
[12/1831] Generating share/nrn/demo/hh.hoc
[13/1831] Generating share/nrn/demo/hh.ses
[14/1831] Generating share/nrn/demo/pyramid.nrn
[15/1831] Generating share/nrn/demo/pyramid.ses
[16/1831] Generating share/nrn/demo/nomodel.hoc
[17/1831] Update hh.mod for CoreNEURON compatibility
[18/1831] Generating share/nrn/demo/release.hoc
[19/1831] Generating share/nrn/demo/release/camchan.mod
[20/1831] Generating share/nrn/demo/release/cachan1.mod
[21/1831] Generating share/nrn/demo/release.ses
[22/1831] Generating share/nrn/demo/reconst.hoc
[23/1831] Generating share/nrn/demo/release/cabpump.mod
[24/1831] Generating share/nrn/demo/release/capump.mod
[25/1831] Generating share/nrn/demo/release/nacaex.mod
[26/1831] Generating share/nrn/demo/release/invlfire.mod
[27/1831] Generating share/nrn/demo/release/khhchan.mod
[28/1831] Generating share/nrn/demo/release/nachan.mod
[29/1831] Generating share/nrn/demo/singhh.hoc
[30/1831] Generating share/nrn/demo/singhhchan.hoc
[31/1831] Generating share/nrn/demo/release/release.mod
[32/1831] Generating share/nrn/demo/sync/cell.hoc
[33/1831] Generating share/nrn/demo/singhh.ses
[34/1831] Generating share/nrn/demo/sync/demosync.hoc
[35/1831] Generating share/nrn/demo/sync/init.hoc
[36/1831] Generating share/nrn/demo/sync/start.ses
[37/1831] Generating share/nrn/demo/sync/synchronize.hoc
[38/1831] Generating share/nrn/demo/sync/spkplot.hoc
[39/1831] Generating share/nrn/lib/auditscripts/notes
[40/1831] Generating share/nrn/demo/testca.hoc
[41/1831] Generating share/nrn/lib/auditscripts/gettarname
[42/1831] Generating share/nrn/lib/helpdict
[43/1831] Generating share/nrn/lib/auditscripts/hocaudit.sh
[44/1831] Generating share/nrn/lib/auditscripts/saveaudit
[45/1831] Generating share/nrn/lib/cleanup
[46/1831] Generating share/nrn/lib/hoc/atoltool.hoc
[47/1831] Generating share/nrn/lib/auditscripts/retrieve.sh
[48/1831] Generating share/nrn/lib/hoc/attshape.hoc
[49/1831] Generating share/nrn/lib/hoc/binfo.hoc
[50/1831] Generating share/nrn/lib/hoc/celbild/celbild1.hoc
[51/1831] Generating share/nrn/lib/hoc/celbild/celgeom.hoc
[52/1831] Generating share/nrn/lib/hoc/celbild/celmang.hoc
[53/1831] Generating share/nrn/lib/hoc/celbild.hoc
[54/1831] Generating share/nrn/lib/hoc/celbild/celset.hoc
[55/1831] Generating share/nrn/lib/hoc/celbild/celmemb.hoc
[56/1831] Generating share/nrn/lib/hoc/celbild/celtopol.hoc
[57/1831] Generating share/nrn/lib/hoc/celbild/inhomofn.hoc
[58/1831] Generating share/nrn/lib/hoc/chanbild/exp.hoc
[59/1831] Generating share/nrn/lib/hoc/celbild/psubset.hoc
[60/1831] Generating share/nrn/lib/hoc/chanbild.hoc
[61/1831] Generating share/nrn/lib/hoc/chanbild/chanbild1.hoc
[62/1831] Generating share/nrn/lib/hoc/chanbild/const.hoc
[63/1831] Generating share/nrn/lib/hoc/chanbild/kschanbg.hoc
[64/1831] Generating share/nrn/lib/hoc/chanbild/gategui.hoc
[65/1831] Generating share/nrn/lib/hoc/chanbild/ksgate.hoc
[66/1831] Generating share/nrn/lib/hoc/chanbild/kstrans.hoc
[67/1831] Generating share/nrn/lib/hoc/chanbild/ksstate.hoc
[68/1831] Generating share/nrn/lib/hoc/chanbild/kstgui.hoc
[69/1831] Generating share/nrn/lib/hoc/chanbild/sigmoid.hoc
[70/1831] Generating share/nrn/lib/hoc/chanbild/linoid.hoc
[71/1831] Generating share/nrn/lib/hoc/chanbild/properties.hoc
[72/1831] Generating share/nrn/lib/hoc/chanbild/table.hoc
[73/1831] Generating share/nrn/lib/hoc/corenrn.hoc
[74/1831] Generating share/nrn/lib/hoc/electrod.hoc
[75/1831] Generating share/nrn/lib/hoc/gatherv.hoc
[76/1831] Generating share/nrn/lib/hoc/family.hoc
[77/1831] Generating share/nrn/lib/hoc/grapher.hoc
[78/1831] Generating share/nrn/lib/hoc/funfit.hoc
[79/1831] Generating share/nrn/lib/hoc/impedanc.hoc
[80/1831] Generating share/nrn/lib/hoc/impedanx.hoc
[81/1831] Generating share/nrn/lib/hoc/import3d.hoc
[82/1831] Generating share/nrn/lib/hoc/import3d/import3d_gui.hoc
[83/1831] Generating share/nrn/lib/hoc/import3d/import3d_sec.hoc
[84/1831] Generating share/nrn/lib/hoc/import3d/read_morphml.hoc
[85/1831] Generating share/nrn/lib/hoc/import3d/read_nlcda3.hoc
[86/1831] Generating share/nrn/lib/hoc/import3d/read_nts.hoc
[87/1831] Generating share/nrn/lib/hoc/import3d/read_nlcda.hoc
[88/1831] Generating share/nrn/lib/hoc/import3d/read_swc.hoc
[89/1831] Generating share/nrn/lib/hoc/impratio.hoc
[90/1831] Generating share/nrn/lib/hoc/inserter.hoc
[91/1831] Generating share/nrn/lib/hoc/lincir/lincir1.hoc
[92/1831] Generating share/nrn/lib/hoc/lincir/lingraph.hoc
[93/1831] Generating share/nrn/lib/hoc/lincir/linmech.hoc
[94/1831] Generating share/nrn/lib/hoc/lincir.hoc
[95/1831] Generating share/nrn/lib/hoc/lincir/elmbase.hoc
[96/1831] Generating share/nrn/lib/hoc/macload.hoc
[97/1831] Generating share/nrn/lib/hoc/loadbal.hoc
[98/1831] Generating share/nrn/lib/hoc/logax.hoc
[99/1831] Generating share/nrn/lib/hoc/mknrndll.hoc
[100/1831] Generating share/nrn/lib/hoc/mkcurve.hoc
[101/1831] Generating share/nrn/lib/hoc/modlunit.hoc
[102/1831] Generating share/nrn/lib/hoc/movierun.hoc
[103/1831] Generating share/nrn/lib/hoc/mulfit.hoc
[104/1831] Generating share/nrn/lib/hoc/mulfit/clampfit.hoc
[105/1831] Generating share/nrn/lib/hoc/mulfit/e_actpot.hoc
[106/1831] Generating share/nrn/lib/hoc/mulfit/e_norm.hoc
[107/1831] Generating share/nrn/lib/hoc/mulfit/e_xy.hoc
[108/1831] Generating share/nrn/lib/hoc/mulfit/eonefunc.hoc
[109/1831] Generating share/nrn/lib/hoc/mulfit/eoneprim.hoc
[110/1831] Generating share/nrn/lib/hoc/mulfit/e_y.hoc
[111/1831] Generating share/nrn/lib/hoc/mulfit/eonerun.hoc
[112/1831] Generating share/nrn/lib/hoc/mulfit/fitparm.hoc
[113/1831] Generating share/nrn/lib/hoc/mulfit/eparmlst.hoc
[114/1831] Generating share/nrn/lib/hoc/mulfit/protorun.hoc
[115/1831] Generating share/nrn/lib/hoc/mulfit/mulfit1.hoc
[116/1831] Generating share/nrn/lib/hoc/mulfit/optwrap.hoc
[117/1831] Generating share/nrn/lib/hoc/mview.hoc
[118/1831] Generating share/nrn/lib/hoc/mview/allcell.hoc
[119/1831] Generating share/nrn/lib/hoc/mview/artview.hoc
[120/1831] Generating share/nrn/lib/hoc/mview/allpp.hoc
[121/1831] Generating share/nrn/lib/hoc/mview/distinct.hoc
[122/1831] Generating share/nrn/lib/hoc/mview/mview1.hoc
[123/1831] Generating share/nrn/lib/hoc/mview/mviewgui.hoc
[124/1831] Generating share/nrn/lib/hoc/mview/distinctparm.hoc
[125/1831] Generating share/nrn/lib/hoc/mview/mviewxml.hoc
[126/1831] Generating share/nrn/lib/hoc/mview/parmsets.hoc
[127/1831] Generating share/nrn/lib/hoc/mview/ncview.hoc
[128/1831] Generating share/nrn/lib/hoc/mview/parmvals.hoc
[129/1831] Generating share/nrn/lib/hoc/mview/ppanal.hoc
[130/1831] Generating share/nrn/lib/hoc/mview/rcclasses.hoc
[131/1831] Generating share/nrn/lib/hoc/mview/secanal.hoc
[132/1831] Generating share/nrn/lib/hoc/mview/realcell.hoc
[133/1831] Generating share/nrn/lib/hoc/netbild.hoc
[134/1831] Generating share/nrn/lib/hoc/mview/treeview.hoc
[135/1831] Generating share/nrn/lib/hoc/netbild/artcel.hoc
[136/1831] Generating share/nrn/lib/hoc/netbild/grstrlst.hoc
[137/1831] Generating share/nrn/lib/hoc/netbild/netgui.hoc
[138/1831] Generating share/nrn/lib/hoc/netbild/edgegui.hoc
[139/1831] Generating share/nrn/lib/hoc/netbild/spkplot.hoc
[140/1831] Generating share/nrn/lib/hoc/netbild/netdata.hoc
[141/1831] Generating share/nrn/lib/hoc/netbild/netready.hoc
[142/1831] Generating share/nrn/lib/hoc/netbild/syntypes.hoc
[143/1831] Generating share/nrn/lib/hoc/netparmpi.hoc
[144/1831] Generating share/nrn/lib/hoc/nrngui.hoc
[145/1831] Generating share/nrn/lib/hoc/noload.hoc
[146/1831] Generating share/nrn/lib/hoc/pcchdir.hoc
[147/1831] Generating share/nrn/lib/hoc/nrngui1.hoc
[148/1831] Generating share/nrn/lib/hoc/parcom.hoc
[149/1831] Generating share/nrn/lib/hoc/pointbsr.hoc
[150/1831] Generating share/nrn/lib/hoc/pointman.hoc
[151/1831] Generating share/nrn/lib/hoc/prcellstate.hoc
[152/1831] Generating share/nrn/lib/hoc/pointgrp.hoc
[153/1831] Generating share/nrn/lib/hoc/showmech.hoc
[154/1831] Generating share/nrn/lib/hoc/runfit.hoc
[155/1831] Generating share/nrn/lib/hoc/single1.hoc
[156/1831] Generating help_data.dat
[157/1831] Generating share/nrn/lib/hoc/shapebox.hoc
[158/1831] Generating share/nrn/lib/hoc/stdlib.hoc
[159/1831] Generating share/nrn/lib/hoc/stdrun.hoc
[160/1831] Generating share/nrn/lib/hoc/single.hoc
[161/1831] Generating share/nrn/lib/hoc/subiter.hoc
[162/1831] Generating share/nrn/lib/hoc/stdgui.hoc
[163/1831] Generating share/nrn/lib/hoc/varmeth1.hoc
[164/1831] Generating share/nrn/lib/hoc/thresh.hoc
[165/1831] Generating share/nrn/lib/hoc/vecwrap.hoc
[166/1831] Generating share/nrn/lib/nrn.defaults.in
[167/1831] Generating share/nrn/lib/hocload.sh
[168/1831] Generating share/nrn/lib/hoc/wingroup.hoc
[169/1831] Generating share/nrn/lib/hoc/vplay.hoc
[170/1831] Generating share/nrn/lib/nrnunits.lib.in
[171/1831] Generating share/nrn/lib/prologue.id
[172/1831] Generating share/nrn/lib/python/neuron/coreneuron.py
[173/1831] Generating share/nrn/lib/python/neuron/config.py
[174/1831] Generating share/nrn/lib/python/neuron/__init__.py
[175/1831] Generating share/nrn/lib/python/neuron/doc.py
[176/1831] Generating share/nrn/lib/python/neuron/gui.py
[177/1831] Generating share/nrn/lib/python/neuron/crxd/__init__.py
[178/1831] Generating share/nrn/lib/python/neuron/gui2/config.py
[179/1831] Generating share/nrn/lib/python/neuron/expect_hocerr.py
[180/1831] Generating share/nrn/lib/python/neuron/gui2/__init__.py
[181/1831] Generating share/nrn/lib/python/neuron/gui2/rangevar.py
[182/1831] Generating share/nrn/lib/python/neuron/gui2/plotshape.py
[183/1831] Generating share/nrn/lib/python/neuron/gui2/setup_threejs.py
[184/1831] Generating share/nrn/lib/python/neuron/gui2/utilities.py
[185/1831] Generating share/nrn/lib/python/neuron/hclass3.py
[186/1831] Generating share/nrn/lib/python/neuron/neuroml/__init__.py
[187/1831] Generating share/nrn/lib/python/neuron/neuroml/metadata.py
[188/1831] Generating share/nrn/lib/python/neuron/neuroml/biophysics.py
[189/1831] Generating share/nrn/lib/python/neuron/neuroml/morphml.py
[190/1831] Generating share/nrn/lib/python/neuron/neuroml/neuroml.py
[191/1831] Generating share/nrn/lib/python/neuron/neuroml/rdxml.py
[192/1831] Generating share/nrn/lib/python/neuron/neuroml/xml2nrn.py
[193/1831] Generating share/nrn/lib/python/neuron/psection.py
[194/1831] Generating share/nrn/lib/python/neuron/nonvint_block_supervisor.py
[195/1831] Generating share/nrn/lib/python/neuron/rxd/constants.py
[196/1831] Generating share/nrn/lib/python/neuron/rxd/__init__.py
[197/1831] Generating share/nrn/lib/python/neuron/rxd/export.py
[198/1831] Generating share/nrn/lib/python/neuron/rxd/generalizedReaction.py
[199/1831] Generating share/nrn/lib/python/neuron/rxd/dimension3.py
[200/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/FullJoinMorph.py
[201/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/GeneralizedVoxelization.py
[202/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/__init__.py
[203/1831] Generating share/nrn/lib/python/neuron/rxd/geometry.py
[204/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/graphicsPrimitives.pyx
[205/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/ctng.pyx
[206/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/scalarField.py
[207/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/simplevolume_helper.py
[208/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/surface.py
[209/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/surfaces.pyx
[210/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/voxelize.py
[211/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/surface_a.py
[212/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/triangularMesh.py
[213/1831] Generating share/nrn/lib/python/neuron/rxd/geometry3d/voxelize2.py
[214/1831] Generating share/nrn/lib/python/neuron/rxd/node.py
[215/1831] Generating share/nrn/lib/python/neuron/rxd/gui.py
[216/1831] Generating share/nrn/lib/python/neuron/rxd/initializer.py
[217/1831] Generating share/nrn/lib/python/neuron/rxd/multiCompartmentReaction.py
[218/1831] Generating share/nrn/lib/python/neuron/rxd/nodelist.py
[219/1831] Generating share/nrn/lib/python/neuron/rxd/options.py
[220/1831] Generating share/nrn/lib/python/neuron/rxd/region.py
[221/1831] Generating share/nrn/lib/python/neuron/rxd/plugins.py
[222/1831] Generating share/nrn/lib/python/neuron/rxd/rangevar.py
[223/1831] Generating share/nrn/lib/python/neuron/rxd/rate.py
[224/1831] Generating share/nrn/lib/python/neuron/rxd/reaction.py
[225/1831] Generating share/nrn/lib/python/neuron/rxd/rxd.py
[226/1831] Generating share/nrn/lib/python/neuron/rxd/rxdsection.py
[227/1831] Generating share/nrn/lib/python/neuron/rxd/rxdException.py
[228/1831] Generating share/nrn/lib/python/neuron/rxd/section1d.py
[229/1831] Generating share/nrn/lib/python/neuron/rxd/rxdmath.py
[230/1831] Generating share/nrn/lib/python/neuron/rxd/species.py
[231/1831] Generating share/nrn/lib/python/neuron/rxdtests/do_test.py
[232/1831] Generating share/nrn/lib/python/neuron/rxdtests/run_all.py
[233/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/include_flux3d_cvode.py
[234/1831] Generating share/nrn/lib/python/neuron/rxdtests/readme.txt
[235/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/circadian_rhythm.py
[236/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/include_flux3d.py
[237/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/multicompartment_reactions.py
[238/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/pure_diffusion_3d_cvode.py
[239/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/pure_diffusion_3d.py
[240/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/torun.txt
[241/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/ca_pump.py
[242/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/IraHH.py
[243/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/cabuf.py
[244/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/cabuf_fixed_step.py
[245/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_before_sections.py
[246/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_include_flux.py
[247/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/c91662.swc
[248/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_example_cvode.py
[249/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_include_flux_cvode.py
[250/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_example.py
[251/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_multi_example.py
[252/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_multi_example_cvode.py
[253/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/pump.mod
[254/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/torun.txt
[255/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh.py
[256/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_cvode.py
[257/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_morph.py
[258/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_param.py
[259/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_param_cvode.py
[260/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid.py
[261/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_change_nthread.py
[262/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_cvode.py
[263/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/pure_diffusion_hybrid.py
[264/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_cvode_change_nthread.py
[265/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/pure_diffusion_hybrid_cvode.py
[266/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/torun.txt
[267/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/include_flux.py
[268/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/include_flux_cvode.py
[269/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_mebrane_mismatch.py
[270/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions_del.py
[271/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions_with_v.py
[272/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions.py
[273/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/nodes_update.py
[274/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/pure_diffusion.py
[275/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/pure_diffusion_cvode.py
[276/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/react_region_specified.py
[277/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/torun.txt
[278/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/cal2.mod
[279/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/verify_no_initialization_order_issue.py
[280/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/caleak.mod
[281/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_null_dest.py
[282/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_param_test.py
[283/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_test.py
[284/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/readme.txt
[285/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_125_1.py
[286/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_25_5.py
[287/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/torun.txt
[288/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_taper_125_1.py
[289/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_taper_25_5.py
[290/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_tree2_125_1.py
[291/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_tree2_25_5.py
[292/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_tree_25_5.py
[293/1831] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_tree_125_1.py
[294/1831] Generating share/nrn/lib/python/neuron/sections.py
[295/1831] Generating share/nrn/lib/python/neuron/tests/_subclass.py
[296/1831] Generating share/nrn/lib/python/neuron/tests/test_neuron.py
[297/1831] Generating share/nrn/lib/python/neuron/tests/__init__.py
[298/1831] Generating share/nrn/lib/python/neuron/tests/test_rxd.py
[299/1831] Generating share/nrn/lib/python/neuron/tests/test_all.py
[300/1831] Generating share/nrn/lib/python/neuron/tests/test_vector.py
[301/1831] Generating share/nrn/lib/python/neuron/tests/utils/__init__.py
[302/1831] Generating share/nrn/lib/python/neuron/tests/utils/checkresult.py
[303/1831] Generating share/nrn/lib/python/neuron/tests/utils/strtobool.py
[304/1831] Generating share/nrn/lib/python/scripts/_README.txt
[305/1831] Generating share/nrn/lib/python/neuron/tests/utils/capture_stdout.py
[306/1831] Generating share/nrn/lib/python/neuron/units.py
[307/1831] Generating share/nrn/lib/python/scripts/idraw
[308/1831] Generating share/nrn/lib/python/scripts/_binwrapper.py
[309/1831] Generating share/nrn/lib/python/scripts/modlunit
[310/1831] Generating share/nrn/lib/python/scripts/neurondemo
[311/1831] Generating share/nrn/lib/python/scripts/mkthreadsafe
[312/1831] Generating share/nrn/lib/python/scripts/nmodl
[313/1831] Generating share/nrn/lib/python/scripts/nrngui
[314/1831] Generating share/nrn/lib/python/scripts/nrniv
[315/1831] Generating share/nrn/lib/python/scripts/nrniv-core
[316/1831] Generating share/nrn/lib/python/scripts/nrnivmodl
[317/1831] Generating share/nrn/lib/python/scripts/nrnivmodl-core
[318/1831] Generating share/nrn/lib/python/scripts/nrnpyenv.sh
[319/1831] Generating share/nrn/lib/python/scripts/sortspike
[320/1831] Generating share/nrn/lib/shape.cm1
[321/1831] Generating share/nrn/lib/shape.cm2
[322/1831] Generating include/cabvars.h
[323/1831] Generating include/backtrace_utils.h
[324/1831] Generating include/bbsavestate.h
[325/1831] Generating include/crout.hpp
[326/1831] Generating include/cspmatrix.h
[327/1831] Generating include/crout_thread.hpp
[328/1831] Generating include/cspredef.h
[329/1831] Generating include/deflate.hpp
[330/1831] Generating include/dimplic.hpp
[331/1831] Generating include/errcodes.hpp
[332/1831] Generating include/euler.hpp
[333/1831] Generating include/euler_thread.hpp
[334/1831] Generating include/hoc_membf.h
[335/1831] Generating include/hocdec.h
[336/1831] Generating include/hoc.h
[337/1831] Generating include/hocassrt.h
[338/1831] Generating include/hocgetsym.h
[339/1831] Generating include/hoclist.h
[340/1831] Generating include/md1redef.h
[341/1831] Generating include/mech_api.h
[342/1831] Generating include/mcran4.h
[343/1831] Generating include/md2redef.h
[344/1831] Generating include/hocparse.h
[345/1831] Generating include/membdef.h
[346/1831] Generating include/membfunc.h
[347/1831] Generating include/neuron/cache/mechanism_range.hpp
[348/1831] Generating include/multicore.h
[349/1831] Generating include/multisplit.h
[350/1831] Generating include/neuron.h
[351/1831] Generating include/neuron/container/data_handle.hpp
[352/1831] Generating include/neuron/container/generic_data_handle.hpp
[353/1831] Generating include/neuron/container/non_owning_soa_identifier.hpp
[354/1831] Generating include/neuron/model_data_fwd.hpp
[355/1831] Generating include/newton.hpp
[356/1831] Generating include/newton_struct.h
[357/1831] Generating include/nmodlmutex.h
[358/1831] Generating include/newton_thread.hpp
[359/1831] Generating include/nrn_ansi.h
[360/1831] Generating include/nrnapi.h
[361/1831] Generating include/nrnassrt.h
[362/1831] Generating include/nrncvode.h
[363/1831] Generating include/nrnmpidec.h
[364/1831] Generating include/nrnisaac.h
[365/1831] Generating include/nrnmpi.h
[366/1831] Generating include/nrniv_mf.h
[367/1831] Generating include/nrnoc_ml.h
[368/1831] Generating include/nrnrandom.h
[369/1831] Generating include/nrnran123.h
[370/1831] Generating include/nrnredef.h
[371/1831] Generating include/nrnversionmacros.h
[372/1831] Generating include/oc_ansi.h
[373/1831] Generating include/ocmisc.h
[374/1831] Generating include/options.h
[375/1831] Generating include/ocfunc.h
[376/1831] Generating include/parse_with_deps.hpp
[377/1831] Generating include/row_view.hpp
[378/1831] Generating include/scoplib.h
[379/1831] Generating include/runge.hpp
[380/1831] Generating include/simeq.hpp
[381/1831] Generating include/section_fwd.hpp
[382/1831] Generating include/sparse.hpp
[383/1831] Generating include/spconfig.h
[384/1831] Generating include/sparse_thread.hpp
[385/1831] Generating include/spmatrix.h
[386/1831] Generating include/ssimplic.hpp
[387/1831] Generating include/ssimplic_thread.hpp
[388/1831] Generating include/wrap_sprintf.h
[389/1831] Generating include/treeset.h
[390/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/file_utils.cpp.o
[391/1831] Building CXX object src/coreneuron/CMakeFiles/corenrn_mpi.dir/mpi/lib/mpispike.cpp.o
[392/1831] Building CXX object src/coreneuron/CMakeFiles/corenrn_mpi.dir/mpi/lib/nrnmpi.cpp.o
[393/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/mem_layout_util.cpp.o
[394/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/global_vars.cpp.o
[395/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/lfp.cpp.o
[396/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/mech_report.cpp.o
[397/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/gpu/nrn_acc_manager.cpp.o
[398/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/main1.cpp.o
[399/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/mk_mech.cpp.o
[400/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/nrn_filehandler.cpp.o
[401/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/core2nrn_data_return.cpp.o
[402/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/nrn2core_data_init.cpp.o
[403/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/output_spikes.cpp.o
[404/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/phase1.cpp.o
[405/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/nrn_checkpoint.cpp.o
[406/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/reports/nrnreport.cpp.o
[407/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/reports/report_event.cpp.o
[408/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/reports/report_configuration_parser.cpp.o
[409/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/reports/sonata_report_handler.cpp.o
[410/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/reports/report_handler.cpp.o
[411/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/capac.cpp.o
[412/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/setup_fornetcon.cpp.o
[413/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mpi/core/nrnmpi_def_cinc.cpp.o
[414/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/prcellstate.cpp.o
[415/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/eion.cpp.o
[416/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/mech_mapping.cpp.o
[417/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/phase2.cpp.o
[418/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/patternstim.cpp.o
[419/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/cvodestb.cpp.o
[420/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/multisend.cpp.o
[421/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/nrn_setup.cpp.o
[422/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/permute/balance.cpp.o
[423/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/multisend_setup.cpp.o
[424/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/partrans.cpp.o
[425/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/tqueue.cpp.o
[426/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/register_mech.cpp.o
[427/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/netcvode.cpp.o
[428/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/permute/cellorder.cpp.o
[429/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/partrans_setup.cpp.o
[430/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/permute/data_layout.cpp.o
[431/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/netpar.cpp.o
[432/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/permute/cellorder2.cpp.o
[433/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/permute/cellorder1.cpp.o
[434/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/fast_imem.cpp.o
[435/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/fadvance_core.cpp.o
[436/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/scopmath/abort.cpp.o
[437/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/ivocvect.cpp.o
[438/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/permute/node_permute.cpp.o
[439/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/scopmath/newton_thread.cpp.o
[440/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/finitialize.cpp.o
[441/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/solve_core.cpp.o
[442/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/progressbar/progressbar.cpp.o
[443/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/lpt.cpp.o
[444/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/treeset_core.cpp.o
[445/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/memory.cpp.o
[446/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/string_utils.cpp.o
[447/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/multicore.cpp.o
[448/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/memory_utils.cpp.o
[449/1831] Generating ../../share/coreneuron/enginemech.cpp
[450/1831] Generating ../../share/coreneuron/mod_func.c.pl
[451/1831] Generating ../../share/modfile/exp2syn.mod
[452/1831] Generating ../../share/modfile/expsyn.mod
[453/1831] Generating ../../share/modfile/hh.mod
[454/1831] Generating ../../share/modfile/netstim.mod
[455/1831] Generating ../../share/modfile/passive.mod
[456/1831] Generating ../../share/modfile/pattern.mod
[457/1831] Generating ../../share/modfile/stim.mod
[458/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrntimeout.cpp.o
[459/1831] Generating ../../share/modfile/svclmp.mod
[460/1831] Generating ../../include/coreneuron/config/neuron_version.hpp
[461/1831] Generating ../../include/coreneuron/apps/corenrn_parameters.hpp
[462/1831] Generating ../../include/coreneuron/config/config.h
[463/1831] Generating ../../include/coreneuron/config/version_macros.hpp
[464/1831] Generating ../../include/coreneuron/coreneuron.hpp
[465/1831] Generating ../../include/coreneuron/gpu/nrn_acc_manager.hpp
[466/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrn_stats.cpp.o
[467/1831] Generating ../../include/coreneuron/io/core2nrn_data_return.hpp
[468/1831] Generating ../../include/coreneuron/io/file_utils.hpp
[469/1831] Generating ../../include/coreneuron/io/lfp.hpp
[470/1831] Generating ../../include/coreneuron/io/mech_report.h
[471/1831] Generating ../../include/coreneuron/io/mem_layout_util.hpp
[472/1831] Generating ../../include/coreneuron/io/nrn2core_direct.h
[473/1831] Generating ../../include/coreneuron/io/nrn_checkpoint.hpp
[474/1831] Generating ../../include/coreneuron/io/nrn_filehandler.hpp
[475/1831] Generating ../../include/coreneuron/io/nrn_setup.hpp
[476/1831] Generating ../../include/coreneuron/io/nrnsection_mapping.hpp
[477/1831] Generating ../../include/coreneuron/io/output_spikes.hpp
[478/1831] Generating ../../include/coreneuron/io/phase1.hpp
[479/1831] Generating ../../include/coreneuron/io/phase2.hpp
[480/1831] Generating ../../include/coreneuron/io/prcellstate.hpp
[481/1831] Generating ../../include/coreneuron/io/reports/nrnreport.hpp
[482/1831] Generating ../../include/coreneuron/io/reports/report_event.hpp
[483/1831] Generating ../../include/coreneuron/io/reports/report_handler.hpp
[484/1831] Generating ../../include/coreneuron/io/reports/sonata_report_handler.hpp
[485/1831] Generating ../../include/coreneuron/io/setup_fornetcon.hpp
[486/1831] Generating ../../include/coreneuron/io/user_params.hpp
[487/1831] Generating ../../include/coreneuron/mechanism/eion.hpp
[488/1831] Generating ../../include/coreneuron/mechanism/mech/cfile/cabvars.h
[489/1831] Generating ../../include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
[490/1831] Generating ../../include/coreneuron/mechanism/mech_mapping.hpp
[491/1831] Generating ../../include/coreneuron/mechanism/mechanism.hpp
[492/1831] Generating ../../include/coreneuron/mechanism/membfunc.hpp
[493/1831] Generating ../../include/coreneuron/mechanism/register_mech.hpp
[494/1831] Generating ../../include/coreneuron/membrane_definitions.h
[495/1831] Generating ../../include/coreneuron/mpi/core/nrnmpi.hpp
[496/1831] Generating ../../include/coreneuron/mpi/lib/nrnmpi.hpp
[497/1831] Generating ../../include/coreneuron/mpi/nrnmpi.h
[498/1831] Generating ../../include/coreneuron/mpi/nrnmpidec.h
[499/1831] Generating ../../include/coreneuron/mpi/nrnmpiuse.h
[500/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrnoc_aux.cpp.o
[501/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/utils.cpp.o
[502/1831] Generating ../../include/coreneuron/network/multisend.hpp
[503/1831] Generating ../../include/coreneuron/network/have2want.h
[504/1831] Generating ../../include/coreneuron/network/netcon.hpp
[505/1831] Generating ../../include/coreneuron/network/netpar.hpp
[506/1831] Generating ../../include/coreneuron/network/netcvode.hpp
[507/1831] Generating ../../include/coreneuron/network/partrans.hpp
[508/1831] Generating ../../include/coreneuron/network/tnode.hpp
[509/1831] Generating ../../include/coreneuron/network/tqueue.hpp
[510/1831] Generating ../../include/coreneuron/nrnconf.h
[511/1831] Generating ../../include/coreneuron/nrniv/nrniv_decl.h
[512/1831] Generating ../../include/coreneuron/nrnoc/md1redef.h
[513/1831] Generating ../../include/coreneuron/nrnoc/md2redef.h
[514/1831] Generating ../../include/coreneuron/permute/cellorder.hpp
[515/1831] Generating ../../include/coreneuron/permute/node_permute.h
[516/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/__/__/coreneuron/config/config.cpp.o
[517/1831] Generating ../../include/coreneuron/permute/data_layout.hpp
[518/1831] Generating ../../include/coreneuron/sim/multicore.hpp
[519/1831] Generating ../../include/coreneuron/sim/fast_imem.hpp
[520/1831] Generating ../../include/coreneuron/sim/scopmath/crout_thread.hpp
[521/1831] Generating ../../include/coreneuron/sim/scopmath/errcodes.h
[522/1831] Generating ../../include/coreneuron/sim/scopmath/newton_struct.h
[523/1831] Generating ../../include/coreneuron/sim/scopmath/newton_thread.hpp
[524/1831] Generating ../../include/coreneuron/sim/scopmath/sparse_thread.hpp
[525/1831] Generating ../../include/coreneuron/utils/lpt.hpp
[526/1831] Generating ../../include/coreneuron/sim/scopmath/ssimplic_thread.hpp
[527/1831] Generating ../../include/coreneuron/utils/ivocvect.hpp
[528/1831] Generating ../../include/coreneuron/utils/memory.h
[529/1831] Generating ../../include/coreneuron/utils/nrn_assert.h
[530/1831] Generating ../../include/coreneuron/utils/nrn_stats.h
[531/1831] Generating ../../include/coreneuron/utils/memory_utils.h
[532/1831] Generating ../../include/coreneuron/utils/nrnmutdec.hpp
[533/1831] Generating ../../include/coreneuron/utils/nrnoc_aux.hpp
[534/1831] Generating ../../include/coreneuron/utils/offload.hpp
[535/1831] Generating ../../include/coreneuron/utils/profile/profiler_interface.h
[536/1831] Generating ../../include/coreneuron/utils/progressbar/progressbar.hpp
[537/1831] Generating ../../include/coreneuron/utils/string_utils.h
[538/1831] Generating ../../include/coreneuron/utils/units.hpp
[539/1831] Generating ../../include/coreneuron/utils/randoms/nrnran123.h
[540/1831] Generating ../../include/coreneuron/utils/utils.hpp
[541/1831] Generating ../../include/coreneuron/utils/utils_cuda.h
[542/1831] Generating ../../share/coreneuron/coreneuron.cpp
[543/1831] Generating ../../include/coreneuron/utils/vrecitem.h
[544/1831] Generating ../../include/coreneuron/nrniv/profiler_interface.h
[545/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mpi/core/resolve.cpp.o
[546/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/randoms/nrnran123.cpp.o
[547/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/vrecord.cpp.o
[548/1831] Building CXX object external/nmodl/ext/fmt/CMakeFiles/fmt.dir/src/os.cc.o
[549/1831] -- NMODL : GENERATING AST CLASSES WITH PYTHON GENERATOR! --
[550/1831] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/file_sinks.cpp.o
[551/1831] -- NMODL : GENERATING VERBATIM PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/verbatim.yy:29.1-24: warning: deprecated directive: '%name-prefix "Verbatim_"', use '%define api.prefix {Verbatim_}' [-Wdeprecated]
29 | %name-prefix "Verbatim_"
| ^~~~~~~~~~~~~~~~~~~~~~~~
| %define api.prefix {Verbatim_}
../../../../../external/nmodl/src/parser/verbatim.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
[552/1831] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/cfg.cpp.o
[553/1831] -- NMODL : GENERATING DIFFERENTIAL EQUATION PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/diffeq.yy:56.1-40: warning: deprecated directive: '%define parser_class_name {DiffeqParser}', use '%define api.parser.class {DiffeqParser}' [-Wdeprecated]
56 | %define parser_class_name {DiffeqParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {DiffeqParser}
../../../../../external/nmodl/src/parser/diffeq.yy: warning: 2 shift/reduce conflicts [-Wconflicts-sr]
../../../../../external/nmodl/src/parser/diffeq.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
../../../../../external/nmodl/src/parser/diffeq.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
[554/1831] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/stdout_sinks.cpp.o
[555/1831] -- NMODL : GENERATING UNIT PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/unit.yy:49.1-38: warning: deprecated directive: '%define parser_class_name {UnitParser}', use '%define api.parser.class {UnitParser}' [-Wdeprecated]
49 | %define parser_class_name {UnitParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {UnitParser}
../../../../../external/nmodl/src/parser/unit.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
[556/1831] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/color_sinks.cpp.o
[557/1831] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/code_printer.cpp.o
[558/1831] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/async.cpp.o
[559/1831] -- NMODL : GENERATING C (11) PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/c11.yy:52.1-35: warning: deprecated directive: '%define parser_class_name {CParser}', use '%define api.parser.class {CParser}' [-Wdeprecated]
52 | %define parser_class_name {CParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {CParser}
../../../../../external/nmodl/src/parser/c11.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
[560/1831] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/nmodl_printer.cpp.o
[561/1831] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/common_utils.cpp.o
[562/1831] Building CXX object external/nmodl/ext/fmt/CMakeFiles/fmt.dir/src/format.cc.o
[563/1831] Linking CXX static library lib/libfmt.a
[564/1831] -- NMODL : GENERATING NMODL_CORE PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/nmodl.yy:64.1-39: warning: deprecated directive: '%define parser_class_name {NmodlParser}', use '%define api.parser.class {NmodlParser}' [-Wdeprecated]
64 | %define parser_class_name {NmodlParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {NmodlParser}
../../../../../external/nmodl/src/parser/nmodl.yy: warning: 3 shift/reduce conflicts [-Wconflicts-sr]
../../../../../external/nmodl/src/parser/nmodl.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
../../../../../external/nmodl/src/parser/nmodl.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
[565/1831] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/perf_stat.cpp.o
[566/1831] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/file_library.cpp.o
[567/1831] Generating ../../../../lib/nmodl/__init__.py
[568/1831] Generating ../../../../lib/nmodl/ast.py
[569/1831] Generating ../../../../lib/nmodl/dsl.py
[570/1831] Generating ../../../../lib/nmodl/ode.py
[571/1831] Generating ../../../../lib/nmodl/symtab.py
[572/1831] Generating ../../../../lib/nmodl/visitor.py
[573/1831] Generating ../../../../include/newton/newton.hpp
[574/1831] Generating ../../../../include/crout/crout.hpp
[575/1831] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/string_utils.cpp.o
[576/1831] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/table_data.cpp.o
[577/1831] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/__/config/config.cpp.o
[578/1831] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spalloc.cpp.o
[579/1831] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spbuild.cpp.o
[580/1831] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spfactor.cpp.o
[581/1831] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spsolve.cpp.o
[582/1831] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spoutput.cpp.o
[583/1831] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/sputils.cpp.o
[584/1831] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/cspalloc.cpp.o
[585/1831] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/cspbuild.cpp.o
[586/1831] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/cspfactor.cpp.o
[587/1831] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/cspoutput.cpp.o
[588/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/ACG.cpp.o
[589/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Binomial.cpp.o
[590/1831] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/cspsolve.cpp.o
[591/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/DiscUnif.cpp.o
[592/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Erlang.cpp.o
[593/1831] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/csputils.cpp.o
[594/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Geom.cpp.o
[595/1831] Linking CXX static library lib/libsparse13.a
[596/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/HypGeom.cpp.o
[597/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/LogNorm.cpp.o
[598/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/MLCG.cpp.o
[599/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/NegExp.cpp.o
[600/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Normal.cpp.o
[601/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Poisson.cpp.o
[602/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Random.cpp.o
[603/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RndInt.cpp.o
[604/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RNG.cpp.o
[605/1831] [FLEX][modlunitlexer] Building scanner with flex 2.6.4
[606/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Uniform.cpp.o
[607/1831] [FLEX][nocmodllexer] Building scanner with flex 2.6.4
[608/1831] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Weibull.cpp.o
[609/1831] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[610/1831] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/json_printer.cpp.o
[611/1831] Linking CXX static library lib/libnrngnu.a
[612/1831] Generating ../oc/hocusr.h
[613/1831] Generating ../../share/nrn/nrnmain.cpp
[614/1831] Generating ../../include/nrnmpiuse.h
[615/1831] Generating ../../include/nrncvode/nrnneosm.h
[616/1831] Generating ../../include/nrnconf.h
[617/1831] [BISON][modlunitparser] Building parser with bison 3.8.2
[618/1831] Generating sortspike
[619/1831] [BISON][ocparser] Building parser with bison 3.8.2
../src/oc/parse.ypp: warning: 96 shift/reduce conflicts [-Wconflicts-sr]
../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[620/1831] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[621/1831] cd /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[622/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/consist.cpp.o
[623/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/declare.cpp.o
[624/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/init.cpp.o
[625/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/io.cpp.o
[626/1831] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/corenrn_parameters.cpp.o
[627/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/model.cpp.o
[628/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/list.cpp.o
[629/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/kinunit.cpp.o
[630/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/nrnunit.cpp.o
[631/1831] Linking CXX static library lib/libcoreneuron-core.a
[632/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/passn.cpp.o
[633/1831] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/spdlog.cpp.o
[634/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/symbol.cpp.o
[635/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units1.cpp.o
[636/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/version.cpp.o
[637/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units.cpp.o
[638/1831] Linking CXX static library lib/libspdlog.a
[639/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/lex.cpp.o
[640/1831] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/parse1.cpp.o
[641/1831] Linking CXX executable bin/modlunit
[642/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/consist.cpp.o
[643/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/discrete.cpp.o
[644/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/init.cpp.o
[645/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/deriv.cpp.o
[646/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/io.cpp.o
[647/1831] Building CXX object external/nmodl/src/pybind/CMakeFiles/pyembed.dir/pyembed.cpp.o
[648/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/kinetic.cpp.o
[649/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/list.cpp.o
[650/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/modl.cpp.o
[651/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/netrec_discon.cpp.o
[652/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/noccout.cpp.o
[653/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/simultan.cpp.o
[654/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/parsact.cpp.o
[655/1831] Building CXX object external/nmodl/src/pybind/CMakeFiles/pywrapper.dir/wrapper.cpp.o
[656/1831] Linking CXX static library lib/libpywrapper.a
[657/1831] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o
[658/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/solve.cpp.o
[659/1831] Linking CXX shared library lib/librxdmath.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[660/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/version.cpp.o
[661/1831] Generating coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py
[662/1831] Generating nrniv_script.py/do_nothing.py
[663/1831] Generating nrniv_script.py_error/assert_false.py
[664/1831] Generating nrniv_two_scripts.py_error_check_code/assert_false.py
[665/1831] Generating nrniv_two_scripts.py/do_nothing.py
[666/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/units.cpp.o
[667/1831] Generating nrniv_two_scripts.py_error_check_code/do_nothing.py
[668/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o
[669/1831] Generating nrniv_two_scripts.py_error_check_output/assert_false.py
[670/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/symbol.cpp.o
[671/1831] Generating nrniv_two_scripts.py_error_check_output/do_nothing.py
[672/1831] Generating nrniv_python_script.py/do_nothing.py
[673/1831] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/logger.cpp.o
[674/1831] Generating nrniv_python_script.py_twice/do_nothing.py
[675/1831] Generating nrniv_python_script.py_error/assert_false.py
[676/1831] Generating nrniv_python_script.py_args/assert_last_args_are_foo_and_bar.py
[677/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o
[678/1831] Generating nrniv_python_script.py_twice/assert_false.py
[679/1831] Generating nrniv_py3.10_python_check_sys_path/check_sys_attr.py
[680/1831] Generating nrniv_py3.10_python_check_sys_path/dump_sys_attr.py
[681/1831] Generating nrniv_py3.10_nrnpython_check_sys_path/check_sys_attr.hoc
[682/1831] Generating nrniv_py3.10_nrnpython_check_sys_path/dump_sys_attr.py
[683/1831] Generating nrniv_py3.10_python_check_sys_prefix/dump_sys_attr.py
[684/1831] Generating nrniv_py3.10_nrnpython_check_sys_prefix/check_sys_attr.hoc
[685/1831] Generating nrniv_py3.10_python_check_sys_prefix/check_sys_attr.py
[686/1831] Generating nrniv_py3.10_nrnpython_check_sys_prefix/dump_sys_attr.py
[687/1831] Generating nrniv_py3.10_python_check_sys_exec_prefix/check_sys_attr.py
[688/1831] Generating nrniv_py3.10_python_check_sys_exec_prefix/dump_sys_attr.py
[689/1831] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc
[690/1831] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/dump_sys_attr.py
[691/1831] Generating nrniv_py3.10_python_check_sys_base_prefix/check_sys_attr.py
[692/1831] Generating nrniv_py3.10_python_check_sys_base_prefix/dump_sys_attr.py
[693/1831] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/dump_sys_attr.py
[694/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o
[695/1831] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/nocpout.cpp.o
[696/1831] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/check_sys_attr.hoc
[697/1831] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/check_sys_attr.py
[698/1831] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/dump_sys_attr.py
[699/1831] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc
[700/1831] Generating nrniv_py3.10_python_check_sys_stderr.encoding/dump_sys_attr.py
[701/1831] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc
[702/1831] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py
[703/1831] Generating nrniv_py3.10_python_check_sys_stderr.encoding/check_sys_attr.py
[704/1831] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py
[705/1831] Generating nrniv_py3.10_python_check_sys_stdin.encoding/check_sys_attr.py
[706/1831] Generating nrniv_py3.10_python_check_sys_stdin.encoding/dump_sys_attr.py
[707/1831] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py
[708/1831] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc
[709/1831] Generating nrniv_py3.10_python_check_sys_stdout.encoding/check_sys_attr.py
[710/1831] Generating nrniv_py3.10_python_check_sys_stdout.encoding/dump_sys_attr.py
[711/1831] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc
[712/1831] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py
[713/1831] Generating nrniv_pydef_python_check_sys_path/dump_sys_attr.py
[714/1831] Generating nrniv_pydef_nrnpython_check_sys_path/check_sys_attr.hoc
[715/1831] Generating nrniv_pydef_python_check_sys_path/check_sys_attr.py
[716/1831] Generating nrniv_pydef_python_check_sys_prefix/check_sys_attr.py
[717/1831] Generating nrniv_pydef_nrnpython_check_sys_path/dump_sys_attr.py
[718/1831] Generating nrniv_pydef_nrnpython_check_sys_prefix/check_sys_attr.hoc
[719/1831] Generating nrniv_pydef_nrnpython_check_sys_prefix/dump_sys_attr.py
[720/1831] Generating nrniv_pydef_python_check_sys_prefix/dump_sys_attr.py
[721/1831] Generating nrniv_pydef_python_check_sys_exec_prefix/dump_sys_attr.py
[722/1831] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc
[723/1831] Generating nrniv_pydef_python_check_sys_exec_prefix/check_sys_attr.py
[724/1831] Generating nrniv_pydef_python_check_sys_base_prefix/check_sys_attr.py
[725/1831] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/dump_sys_attr.py
[726/1831] Generating nrniv_pydef_python_check_sys_base_prefix/dump_sys_attr.py
[727/1831] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/dump_sys_attr.py
[728/1831] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/check_sys_attr.hoc
[729/1831] Generating nrniv_pydef_python_check_sys_base_exec_prefix/dump_sys_attr.py
[730/1831] Generating nrniv_pydef_python_check_sys_base_exec_prefix/check_sys_attr.py
[731/1831] Generating nrniv_pydef_python_check_sys_stderr.encoding/dump_sys_attr.py
[732/1831] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc
[733/1831] Generating nrniv_pydef_python_check_sys_stderr.encoding/check_sys_attr.py
[734/1831] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py
[735/1831] Generating nrniv_pydef_python_check_sys_stdin.encoding/check_sys_attr.py
[736/1831] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc
[737/1831] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py
[738/1831] Generating nrniv_pydef_python_check_sys_stdin.encoding/dump_sys_attr.py
[739/1831] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc
[740/1831] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py
[741/1831] Linking CXX static library lib/libutil.a
[742/1831] Generating nrniv_pydef_python_check_sys_stdout.encoding/dump_sys_attr.py
[743/1831] Generating nrniv_pydef_python_check_sys_stdout.encoding/check_sys_attr.py
[744/1831] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc
[745/1831] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py
[746/1831] Generating ../tests/testcorenrn/reference/out_bbcore.spk
[747/1831] Generating ../tests/ringtest/reference_data/spk1.100ms.std.ref
[748/1831] Generating ../../compare_test_results.py
[749/1831] Generating ../tests/testcorenrn/reference/out_conc.spk
[750/1831] Linking CXX executable bin/nocmodl
[751/1831] Generating ../tests/testcorenrn/reference/out_deriv.spk
[752/1831] Generating ../tests/testcorenrn/reference/out_gf.spk
[753/1831] Generating ../tests/testcorenrn/reference/out_kin.spk
[754/1831] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! --
[755/1831] -- NMODL : GENERATING UNIT LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched
[756/1831] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/diffeq.ll:100: warning, -s option given but default rule can be matched
[757/1831] -- NMODL : GENERATING NMODL LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/nmodl.ll:503: warning, -s option given but default rule can be matched
[758/1831] -- NMODL : GENERATING C(11) LEXER WITH FLEX! --
[759/1831] Linking CXX static library lib/libpyembed.a
[760/1831] Generating ../nrnoc/apcount.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/apcount.cpp
Thread Safe
[761/1831] Generating ../nrnoc/feature.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/feature.cpp
Notice: VERBATIM blocks are not thread safe
[762/1831] Generating ../nrnoc/intfire4.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/intfire4.cpp
Thread Safe
[763/1831] Generating ../nrnoc/intfire1.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/intfire1.cpp
Thread Safe
[764/1831] Generating ../nrnoc/exp2syn.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp
Thread Safe
[765/1831] Generating ../nrnoc/hh.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/hh.cpp
Thread Safe
[766/1831] Generating ../nrnoc/intfire2.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/intfire2.cpp
Thread Safe
[767/1831] Generating ../nrnoc/expsyn.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/expsyn.cpp
Thread Safe
[768/1831] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_transform_visitor.cpp.o
[769/1831] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_info.cpp.o
[770/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/modtoken.cpp.o
[771/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/token_mapping.cpp.o
[772/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_utils.cpp.o
[773/1831] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_utils.cpp.o
[774/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/verbatim_lexer.cpp.o
[775/1831] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_acc_visitor.cpp.o
[776/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/diffeq_base_lexer.cpp.o
[777/1831] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_compatibility_visitor.cpp.o
[778/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_driver.cpp.o
[779/1831] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_helper_visitor.cpp.o
[780/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/unit_base_lexer.cpp.o
[781/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/c11_base_lexer.cpp.o
[782/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_context.cpp.o
[783/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_base_lexer.cpp.o
[784/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/verbatim_parser.cpp.o
[785/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c11_driver.cpp.o
[786/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit_driver.cpp.o
[787/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c/c11_parser.cpp.o
[788/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq/diffeq_parser.cpp.o
[789/1831] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol_properties.cpp.o
[790/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit/unit_parser.cpp.o
[791/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl_driver.cpp.o
[792/1831] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol.cpp.o
[793/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/units/units.cpp.o
[794/1831] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol_table.cpp.o
[795/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/global_var_visitor.cpp.o
[796/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/indexedname_visitor.cpp.o
[797/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/implicit_argument_visitor.cpp.o
[798/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/after_cvode_to_cnexp_visitor.cpp.o
[799/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/constant_folder_visitor.cpp.o
[800/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/local_to_assigned_visitor.cpp.o
[801/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl/nmodl_parser.cpp.o
[802/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/defuse_analyze_visitor.cpp.o
[803/1831] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_cpp_visitor.cpp.o
[804/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/local_var_rename_visitor.cpp.o
[805/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/kinetic_block_visitor.cpp.o
[806/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/perf_visitor.cpp.o
[807/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/loop_unroll_visitor.cpp.o
[808/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/inline_visitor.cpp.o
[809/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/localize_visitor.cpp.o
[810/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/neuron_solve_visitor.cpp.o
[811/1831] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/ast/ast.cpp.o
[812/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/semantic_analysis_visitor.cpp.o
[813/1831] Linking CXX static library lib/liblexer.a
[814/1831] Linking CXX static library lib/libsymtab.a
[815/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/solve_block_visitor.cpp.o
[816/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/var_usage_visitor.cpp.o
[817/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/rename_visitor.cpp.o
[818/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_visitor.cpp.o
[819/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/units_visitor.cpp.o
[820/1831] Building CXX object external/nmodl/src/CMakeFiles/nmodl.dir/main.cpp.o
[821/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/ast_visitor.cpp.o
[822/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/steadystate_visitor.cpp.o
[823/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/lookup_visitor.cpp.o
[824/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/checkparent_visitor.cpp.o
[825/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_var_rename_visitor.cpp.o
[826/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/json_visitor.cpp.o
[827/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/visitor_utils.cpp.o
[828/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_replace_solutions_visitor.cpp.o
[829/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_conductance_visitor.cpp.o
[830/1831] Generating ../nrnoc/netstim.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/netstim.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[831/1831] Generating ../nrnoc/oclmp.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/oclmp.cpp
Thread Safe
[832/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/nmodl_visitor.cpp.o
[833/1831] Generating ../nrnoc/passive.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/passive.cpp
Thread Safe
[834/1831] Generating ../nrnoc/pattern.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/pattern.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[835/1831] Generating ../nrnoc/ppmark.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/ppmark.cpp
Thread Safe
[836/1831] Generating ../nrnoc/stim.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/stim.cpp
Thread Safe
[837/1831] Generating ../nrnoc/svclmp.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/svclmp.cpp
Thread Safe
[838/1831] Generating ../nrnoc/vclmp.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/vclmp.cpp
Notice: VERBATIM blocks are not thread safe
Notice: LINEAR is not thread safe.
[839/1831] Generating ../tests/testcorenrn/reference/out_patstim.spk
[840/1831] Generating ../nrnoc/syn.cpp
Translating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/src/nrnoc/syn.cpp
Thread Safe
[841/1831] Generating ../tests/testcorenrn/reference/out_vecplay.spk
[842/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/symtab_visitor.cpp.o
[843/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/axis.cpp.o
[844/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/apwindow.cpp.o
[845/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/bndedval.cpp.o
[846/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/cbwidget.cpp.o
[847/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/checkpnt.cpp.o
[848/1831] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_solver_visitor.cpp.o
[849/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/epsprint.cpp.o
[850/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/gifimage.cpp.o
[851/1831] Linking CXX static library lib/libvisitor.a
[852/1831] Linking CXX static library lib/libcodegen.a
[853/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/fourier.cpp.o
[854/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/graphvec.cpp.o
[855/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grmanip.cpp.o
[856/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/graph.cpp.o
[857/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp.o
[858/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grglyph.cpp.o
[859/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/idraw.cpp.o
[860/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o
[861/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o
[862/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocrand.cpp.o
[863/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/matrix.cpp.o
[864/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/mlinedit.cpp.o
[865/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o
[866/1831] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pynmodl.cpp.o
[867/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o
[868/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/mymath.cpp.o
[869/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/objcmd.cpp.o
[870/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/oc2iv.cpp.o
[871/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocbrowsr.cpp.o
[872/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocbox.cpp.o
[873/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ochelp.cpp.o
[874/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocdeck.cpp.o
[875/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocfile.cpp.o
[876/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/oclist.cpp.o
[877/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocnoiv1.cpp.o
[878/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocobserv.cpp.o
[879/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocmatrix.cpp.o
[880/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocpicker.cpp.o
[881/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/rect.cpp.o
[882/1831] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pyast.cpp.o
[883/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/octimer.cpp.o
[884/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/pwman.cpp.o
[885/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocpointer.cpp.o
[886/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/rubband.cpp.o
[887/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/scene.cpp.o
[888/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocptrvector.cpp.o
[889/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/scenepic.cpp.o
[890/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/symchoos.cpp.o
[891/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/utility.cpp.o
[892/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/xyview.cpp.o
[893/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/field.cpp.o
[894/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/xmenu.cpp.o
[895/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/xdep.cpp.o
[896/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/strfun.cpp.o
[897/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/cvodestb.cpp.o
[898/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/cvtrset.cpp.o
[899/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/cvodeobj.cpp.o
[900/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/nrndaspk.cpp.o
[901/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/tqueue.cpp.o
[902/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbs.cpp.o
[903/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/occvode.cpp.o
[904/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbsdirect.cpp.o
[905/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbslocal.cpp.o
[906/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbslsrv.cpp.o
[907/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/backtrace_utils.cpp.o
[908/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbsrcli.cpp.o
[909/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbssrv.cpp.o
[910/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/classreg.cpp.o
[911/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbslsrv2.cpp.o
[912/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/geometry3d.cpp.o
[913/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/finithnd.cpp.o
[914/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/cxprop.cpp.o
[915/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/datapath.cpp.o
[916/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/glinerec.cpp.o
[917/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbsavestate.cpp.o
[918/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/hocmech.cpp.o
[919/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/impedanc.cpp.o
[920/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/linmod.cpp.o
[921/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/netcvode.cpp.o
[922/1831] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pysymtab.cpp.o
[923/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/kssingle.cpp.o
[924/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/linmod1.cpp.o
[925/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/matrixmap.cpp.o
[926/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/memory_usage.cpp.o
[927/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/ndatclas.cpp.o
[928/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/kschan.cpp.o
[929/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nonlinz.cpp.o
[930/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nrncore_write/data/datum_indices.cpp.o
[931/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nrncore_write.cpp.o
[932/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/netpar.cpp.o
[933/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/multisplit.cpp.o
[934/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nrndae.cpp.o
[935/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nrncore_write/io/nrncore_io.cpp.o
[936/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nrncore_write/data/cell_group.cpp.o
[937/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nrncore_write/utils/nrncore_utils.cpp.o
[938/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nrnpy.cpp.o
[939/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nvector_nrnserial_ld.cpp.o
[940/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nrnmenu.cpp.o
[941/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nrnste.cpp.o
[942/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nrncore_write/callbacks/nrncore_callbacks.cpp.o
[943/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nvector_nrnthread.cpp.o
[944/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nvector_nrnthread_ld.cpp.o
[945/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/ocjump.cpp.o
[946/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/rotate3d.cpp.o
[947/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/ppshape.cpp.o
[948/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/ocbbs.cpp.o
[949/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/shapeplt.cpp.o
[950/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/shape.cpp.o
[951/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/secbrows.cpp.o
[952/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/prcellstate.cpp.o
[953/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/pysecname2sec.cpp.o
[954/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/savstate.cpp.o
[955/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/splitcell.cpp.o
[956/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/partrans.cpp.o
[957/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/symdir.cpp.o
[958/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/vrecord.cpp.o
[959/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/spaceplt.cpp.o
[960/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/capac.cpp.o
[961/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/clamp.cpp.o
[962/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/cabcode.cpp.o
[963/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/fstim.cpp.o
[964/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/eion.cpp.o
[965/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hocprax.cpp.o
[966/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/extcelln.cpp.o
[967/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/fadvance.cpp.o
[968/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/container.cpp.o
[969/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/membfunc.cpp.o
[970/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/nrnnemo.cpp.o
[971/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/memblist.cpp.o
[972/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/nrntimeout.cpp.o
[973/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/ldifus.cpp.o
[974/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/nrnversion.cpp.o
[975/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/passive0.cpp.o
[976/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/seclist.cpp.o
[977/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/psection.cpp.o
[978/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/secref.cpp.o
[979/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/point.cpp.o
[980/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/init.cpp.o
[981/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/synapse.cpp.o
[982/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/isaac64.cpp.o
[983/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/nrnisaac.cpp.o
[984/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/mcran4.cpp.o
[985/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/audit.cpp.o
[986/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/nrnran123.cpp.o
[987/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/solve.cpp.o
[988/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/axis.cpp.o
[989/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/debug.cpp.o
[990/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/code2.cpp.o
[991/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/multicore.cpp.o
[992/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/fileio.cpp.o
[993/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/ftime.cpp.o
[994/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/functabl.cpp.o
[995/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/getsym.cpp.o
[996/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/hocusr.cpp.o
[997/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/hoc_init.cpp.o
[998/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/hoc.cpp.o
[999/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/list.cpp.o
[1000/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/mswinprt.cpp.o
[1001/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/math.cpp.o
[1002/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/treeset.cpp.o
[1003/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/ocerf.cpp.o
[1004/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/nonlin.cpp.o
[1005/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/plt.cpp.o
[1006/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/plot.cpp.o
[1007/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/regexp.cpp.o
[1008/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/scoprand.cpp.o
[1009/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/version.cpp.o
[1010/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/hoc_oop.cpp.o
[1011/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/settext.cpp.o
[1012/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/arnoldi.c.o
[1013/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/symbol.cpp.o
[1014/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/x.cpp.o
[1015/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/bdfactor.c.o
[1016/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/bkpfacto.c.o
[1017/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/dmacheps.c.o
[1018/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/conjgrad.c.o
[1019/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/chfactor.c.o
[1020/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/copy.c.o
[1021/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/code.cpp.o
[1022/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/err.c.o
[1023/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/fft.c.o
[1024/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/givens.c.o
[1025/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/extras.c.o
[1026/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/xred.cpp.o
[1027/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/hessen.c.o
[1028/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/hsehldr.c.o
[1029/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/init.c.o
[1030/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/iter0.c.o
[1031/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/ivecop.c.o
[1032/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/itersym.c.o
[1033/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/lanczos.c.o
[1034/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/machine.c.o
[1035/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/lufactor.c.o
[1036/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/oc_generated/parse.cpp.o
[1037/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/matlab.c.o
[1038/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/iternsym.c.o
[1039/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/meminfo.c.o
[1040/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/matop.c.o
[1041/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/memstat.c.o
[1042/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/memory.c.o
[1043/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/matrixio.c.o
[1044/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/norm.c.o
[1045/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/mfunc.c.o
[1046/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/otherio.c.o
[1047/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/pxop.c.o
[1048/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/solve.c.o
[1049/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/qrfactor.c.o
[1050/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/schur.c.o
[1051/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/sparseio.c.o
[1052/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/splufctr.c.o
[1053/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/sparse.c.o
[1054/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/spchfctr.c.o
[1055/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/submat.c.o
[1056/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/spswap.c.o
[1057/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/sprow.c.o
[1058/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/update.c.o
[1059/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/version.c.o
[1060/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/symmeig.c.o
[1061/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/svd.c.o
[1062/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/vecop.c.o
[1063/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zcopy.c.o
[1064/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zgivens.c.o
[1065/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zfunc.c.o
[1066/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/spbkp.c.o
[1067/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zhessen.c.o
[1068/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zhsehldr.c.o
[1069/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zmachine.c.o
[1070/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zlufctr.c.o
[1071/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zmatlab.c.o
[1072/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zmatio.c.o
[1073/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zmemory.c.o
[1074/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/znorm.c.o
[1075/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zmatop.c.o
[1076/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zschur.c.o
[1077/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zqrfctr.c.o
[1078/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zsolve.c.o
[1079/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/zvecop.c.o
[1080/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/feature.cpp.o
[1081/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/apcount.cpp.o
[1082/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o
[1083/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/exp2syn.cpp.o
[1084/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/expsyn.cpp.o
[1085/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hh.cpp.o
[1086/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o
[1087/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/passive.cpp.o
[1088/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o
[1089/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/netstim.cpp.o
[1090/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/oclmp.cpp.o
[1091/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/pattern.cpp.o
[1092/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/ppmark.cpp.o
[1093/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/stim.cpp.o
[1094/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/abort.cpp.o
[1095/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/boundary.cpp.o
[1096/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/advance.cpp.o
[1097/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/crank.cpp.o
[1098/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/syn.cpp.o
[1099/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/f2cmisc.cpp.o
[1100/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/svclmp.cpp.o
[1101/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/scoperf.cpp.o
[1102/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/exprand.cpp.o
[1103/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/vclmp.cpp.o
[1104/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/expfit.cpp.o
[1105/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/gauss.cpp.o
[1106/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/factoria.cpp.o
[1107/1831] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pynode_0.cpp.o
[1108/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/force.cpp.o
[1109/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/getmem.cpp.o
[1110/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/harmonic.cpp.o
[1111/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/hyperbol.cpp.o
[1112/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/invert.cpp.o
[1113/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/lag.cpp.o
[1114/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/legendre.cpp.o
[1115/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/perpulse.cpp.o
[1116/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/normrand.cpp.o
[1117/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/perstep.cpp.o
[1118/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/poisrand.cpp.o
[1119/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/poisson.cpp.o
[1120/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/revhyper.cpp.o
[1121/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/pulse.cpp.o
[1122/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/revsawto.cpp.o
[1123/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/ramp.cpp.o
[1124/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/revsigmo.cpp.o
[1125/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/romberg.cpp.o
[1126/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/sawtooth.cpp.o
[1127/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/praxis.cpp.o
[1128/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sparse/bksub.cpp.o
[1129/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/sigmoid.cpp.o
[1130/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/step.cpp.o
[1131/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/spline.cpp.o
[1132/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/squarewa.cpp.o
[1133/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/threshol.cpp.o
[1134/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/cvodes/cvband.c.o
[1135/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/scopmath/tridiag.cpp.o
[1136/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/cvodes/cvbandpre.c.o
[1137/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sparse/getelm.cpp.o
[1138/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/cvodes/cvdense.c.o
[1139/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/cvodes/cvdiag.c.o
[1140/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/cvodes/cvbbdpre.c.o
[1141/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sparse/lineq.cpp.o
[1142/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sparse/subrows.cpp.o
[1143/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sparse/prmat.cpp.o
[1144/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/cvodes/cvspgmr.c.o
[1145/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/ida/idaband.c.o
[1146/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/cvodes/cvodea.c.o
[1147/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/cvodes/cvodesio.c.o
[1148/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/ida/idabbdpre.c.o
[1149/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/ida/idadense.c.o
[1150/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/ida/idaio.c.o
[1151/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/ida/idaic.c.o
[1152/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/shared/band.c.o
[1153/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/ida/idaspgmr.c.o
[1154/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/shared/dense.c.o
[1155/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/shared/nvector.c.o
[1156/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/shared/iterative.c.o
[1157/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/shared/smalldense.c.o
[1158/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/shared/sundialsmath.c.o
[1159/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/ida/ida.c.o
[1160/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/shared/spgmr.c.o
[1161/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/shared/nvector_serial.c.o
[1162/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/shared/nvector_parallel.c.o
[1163/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnmpi/nrnmpi.cpp.o
[1164/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnmpi/memory_usage.cpp.o
[1165/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnmpi/bbsmpipack.cpp.o
[1166/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnmpi/mpispike.cpp.o
[1167/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/nvector_nrnparallel_ld.cpp.o
[1168/1831] Building C object src/nrniv/CMakeFiles/nrniv_lib.dir/__/sundials/cvodes/cvodes.c.o
[1169/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/nrnpython.cpp.o
[1170/1831] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pynode_1.cpp.o
[1171/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/nrnpy_p2h.cpp.o
[1172/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/rxd_marching_cubes.cpp.o
[1173/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/rxd_extracellular.cpp.o
[1174/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/rxd_llgramarea.cpp.o
[1175/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/grids.cpp.o
[1176/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/rxd_intracellular.cpp.o
[1177/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivos/listimpl.cpp.o
[1178/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivos/string.cpp.o
[1179/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivos/observe.cpp.o
[1180/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/nrnpy_nrn.cpp.o
[1181/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivos/resource.cpp.o
[1182/1831] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/ivoc/nrnmain.cpp.o
[1183/1831] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/modlreg.cpp.o
[1184/1831] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o
[1185/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivos/regexp.cpp.o
[1186/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/nrnpy_hoc.cpp.o
[1187/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/rxd_vol.cpp.o
[1188/1831] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/rxd.cpp.o
[1189/1831] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pyvisitor.cpp.o
[1190/1831] Linking CXX shared library lib/libnrniv.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[1191/1831] Linking CXX executable bin/nrniv
[1192/1831] Linking CXX shared module lib/nmodl/_nmodl.cpython-310-darwin.so
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[1193/1831] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/basic.cpp.o
[1194/1831] Generating inithoc.cpp
[1195/1831] Linking CXX executable bin/nmodl
[1196/1831] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/oc/hoc_interpreter.cpp.o
[1197/1831] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:162: UserWarning: "/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn" is shallow and may cause errors
warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:creating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:creating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:creating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:creating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:creating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:creating /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:building 'neuron.hoc' extension
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../
ld: warning: -undefined dynamic_lookup may not work with chained fixups
INFO:root:running build_scripts
INFO:root:creating build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755
[1198/1831] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/generic_data_handle.cpp.o
[1199/1831] Generating nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/mcna.mod
[1200/1831] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/mechanism.cpp.o
[1201/1831] Running nrnivmodl-core with internal mod files
WARNING: No mod files found in '/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/bin', compiling default ones only!
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running cnexp visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
[1202/1831] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/follower.mod
[1203/1831] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/container.cpp.o
[1204/1831] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/benchmarks/threads/test_multicore.cpp.o
[1205/1831] Building special[-core] for test group pytest
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c
cfiles =
Mod files: "./mcna.mod"
MODOBJS= ./mcna.o
-> Compiling mod_func.cpp
-> NMODL .././mcna.mod
Translating mcna.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
Thread Safe
-> Compiling mcna.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1206/1831] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"
MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
-> Compiling mod_func.cpp
-> NMODL ../cabpump.mod
-> NMODL ../camchan.mod
-> NMODL ../cachan1.mod
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Translating camchan.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Thread Safe
Thread Safe
-> NMODL ../capump.mod
-> NMODL ../invlfire.mod
-> NMODL ../khhchan.mod
Translating capump.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
Thread Safe
Thread Safe
-> NMODL ../nacaex.mod
-> NMODL ../nachan.mod
-> NMODL ../release.mod
Translating release.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
Thread Safe
Translating nachan.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
Thread Safe
-> Compiling cabpump.cpp
-> Compiling cachan1.cpp
-> Compiling camchan.cpp
-> Compiling capump.cpp
-> Compiling invlfire.cpp
-> Compiling khhchan.cpp
-> Compiling nacaex.cpp
-> Compiling nachan.cpp
-> Compiling release.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1207/1831] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/node.cpp.o
[1208/1831] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/gap.mod
[1209/1831] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/name_clashes.mod
[1210/1831] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/unitstest.mod
[1211/1831] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/version_macros.mod
[1212/1831] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/matrix.cpp.o
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/test/unit_tests/matrix.cpp:205:57: warning: braces around scalar initializer [-Wbraced-scalar-init]
REQUIRE(v.vec()[2] == Catch::Detail::Approx({1.}));
^~~~
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/catch2/single_include/catch2/catch.hpp:17659:90: note: expanded from macro 'REQUIRE'
#define REQUIRE( ... ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, __VA_ARGS__ )
^~~~~~~~~~~
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/catch2/single_include/catch2/catch.hpp:2703:40: note: expanded from macro 'INTERNAL_CATCH_TEST'
CATCH_INTERNAL_IGNORE_BUT_WARN(__VA_ARGS__); \
^~~~~~~~~~~
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/catch2/single_include/catch2/catch.hpp:165:76: note: expanded from macro 'CATCH_INTERNAL_IGNORE_BUT_WARN'
# define CATCH_INTERNAL_IGNORE_BUT_WARN(...) (void)__builtin_constant_p(__VA_ARGS__) /* NOLINT(cppcoreguidelines-pro-type-vararg, hicpp-vararg) */
^~~~~~~~~~~
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/test/unit_tests/matrix.cpp:205:57: warning: braces around scalar initializer [-Wbraced-scalar-init]
REQUIRE(v.vec()[2] == Catch::Detail::Approx({1.}));
^~~~
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/catch2/single_include/catch2/catch.hpp:17659:90: note: expanded from macro 'REQUIRE'
#define REQUIRE( ... ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, __VA_ARGS__ )
^~~~~~~~~~~
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/catch2/single_include/catch2/catch.hpp:2708:70: note: expanded from macro 'INTERNAL_CATCH_TEST'
catchAssertionHandler.handleExpr( Catch::Decomposer() <= __VA_ARGS__ ); \
^~~~~~~~~~~
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/test/unit_tests/matrix.cpp:205:57: warning: braces around scalar initializer [-Wbraced-scalar-init]
REQUIRE(v.vec()[2] == Catch::Detail::Approx({1.}));
^~~~
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/catch2/single_include/catch2/catch.hpp:17659:90: note: expanded from macro 'REQUIRE'
#define REQUIRE( ... ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, __VA_ARGS__ )
^~~~~~~~~~~
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/external/catch2/single_include/catch2/catch.hpp:2712:56: note: expanded from macro 'INTERNAL_CATCH_TEST'
} while( (void)0, (false) && static_cast<bool>( !!(__VA_ARGS__) ) )
^~~~~~~~~~~
3 warnings generated.
[1213/1831] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json
[1214/1831] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py
[1215/1831] Generating nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/opaque_token.mod
[1216/1831] Generating nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/ptr.mod
[1217/1831] Building special[-core] for test group datahandle
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453
cfiles =
Mod files: "./opaque_token.mod" "./ptr.mod"
MODOBJS= ./opaque_token.o ./ptr.o
-> Compiling mod_func.cpp
-> NMODL .././opaque_token.mod
-> NMODL .././ptr.mod
Translating ptr.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp
Notice: Use of POINTER is not thread safe.
Translating opaque_token.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp
Notice: VERBATIM blocks are not thread safe
-> Compiling ptr.cpp
-> Compiling opaque_token.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1218/1831] Generating datahandle/datahandle_tests/test/datahandle/test_1.py
[1219/1831] Generating datahandle/datahandle_tests/test/datahandle/test_token.py
[1220/1831] Generating nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/ppxsrc.mod
[1221/1831] Building special[-core] for test group coverage_tests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51
cfiles =
Mod files: "./ppxsrc.mod"
MODOBJS= ./ppxsrc.o
-> Compiling mod_func.cpp
-> NMODL .././ppxsrc.mod
Translating ppxsrc.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
Thread Safe
-> Compiling ppxsrc.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1222/1831] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json
[1223/1831] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py
[1224/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/argpass.mod
[1225/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cabpump.mod
[1226/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cachan.mod
[1227/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacum.mod
[1228/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacur.mod
[1229/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadif.mod
[1230/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadifusl.mod
[1231/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagk.mod
[1232/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagkftab.mod
[1233/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/capmp.mod
[1234/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/expsynspine.mod
[1235/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fh.mod
[1236/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fit1.mod
[1237/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/gap.mod
[1238/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hh1.mod
[1239/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hhvect.mod
[1240/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/inatest.mod
[1241/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod
[1242/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod
[1243/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod
[1244/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod
[1245/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod
[1246/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod
[1247/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod
[1248/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod
[1249/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod
[1250/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc
[1251/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod
[1252/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod
[1253/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod
[1254/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod
[1255/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod
[1256/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod
[1257/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod
[1258/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod
[1259/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod
[1260/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod
[1261/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod
[1262/1831] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod
[1263/1831] Building special[-core] for test group pytest_coreneuron
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"
MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/follower.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gap.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/name_clashes.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././follower.mod
-> NMODL .././gap.mod
-> NMODL .././name_clashes.mod
Translating follower.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Translating gap.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
Thread Safe
Thread Safe
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
Thread Safe
-> NMODL .././unitstest.mod
-> NMODL .././version_macros.mod
-> Compiling follower.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
Thread Safe
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
Thread Safe
-> Compiling gap.cpp
-> Compiling name_clashes.cpp
-> Compiling unitstest.cpp
-> Compiling version_macros.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1264/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py
[1265/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py
[1266/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py
[1267/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py
[1268/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py
[1269/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py
[1270/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py
[1271/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py
[1272/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py
[1273/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py
[1274/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py
[1275/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py
[1276/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py
[1277/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py
[1278/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json
[1279/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py
[1280/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py
[1281/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py
[1282/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py
[1283/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py
[1284/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py
[1285/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py
[1286/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_units.py
[1287/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py
[1288/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py
[1289/1831] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py
[1290/1831] Generating nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f/atest.mod
[1291/1831] Building CXX object test/CMakeFiles/testneuron.dir/common/catch2_main.cpp.o
[1292/1831] Building special[-core] for test group hoctests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f
cfiles =
Mod files: "./atest.mod"
MODOBJS= ./atest.o
-> Compiling mod_func.cpp
-> NMODL .././atest.mod
Translating atest.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f/arm64/atest.cpp
Thread Safe
-> Compiling atest.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1293/1831] Generating hoctests/test_loadbal_hoc/expect_err.hoc
[1294/1831] Linking CXX executable bin/test/testneuron
[1295/1831] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc
[1296/1831] Generating hoctests/perf1_hoc/expect_err.hoc
[1297/1831] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc
[1298/1831] Generating hoctests/test1_hoc/expect_err.hoc
[1299/1831] Generating hoctests/test1_hoc/vardimtests/test1.hoc
[1300/1831] Generating hoctests/test2_hoc/expect_err.hoc
[1301/1831] Generating hoctests/test2_hoc/vardimtests/test2.hoc
[1302/1831] Generating hoctests/test3_hoc/expect_err.hoc
[1303/1831] Generating hoctests/test3_hoc/vardimtests/test3.hoc
[1304/1831] Generating hoctests/test4_hoc/expect_err.hoc
[1305/1831] Generating hoctests/test4_hoc/vardimtests/test4.hoc
[1306/1831] Generating hoctests/test5_hoc/expect_err.hoc
[1307/1831] Generating hoctests/test5_hoc/vardimtests/test5.hoc
[1308/1831] Generating hoctests/test6_hoc/expect_err.hoc
[1309/1831] Generating hoctests/test6_hoc/vardimtests/test6.hoc
[1310/1831] Generating hoctests/test7_hoc/expect_err.hoc
[1311/1831] Generating hoctests/test7_hoc/vardimtests/test7.hoc
[1312/1831] Generating hoctests/test8_hoc/expect_err.hoc
[1313/1831] Generating hoctests/test8_hoc/vardimtests/test8.hoc
[1314/1831] Generating hoctests/test9_hoc/expect_err.hoc
[1315/1831] Generating hoctests/test9_hoc/vardimtests/test9.hoc
[1316/1831] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py
[1317/1831] Generating hoctests/test_kschan_py/tests/test_kschan.json
[1318/1831] Generating hoctests/test_kschan_py/tests/test_kschan.py
[1319/1831] Generating hoctests/test_mode_py/tests/test_mode.py
[1320/1831] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json
[1321/1831] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py
[1322/1831] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py
[1323/1831] Generating hoctests/test_shape_py/tests/test_shape.py
[1324/1831] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py
[1325/1831] Generating hoctests/test1_py/vardimtests/test1.py
[1326/1831] Generating hoctests/test2_py/vardimtests/test2.py
[1327/1831] Generating hoctests/test9_py/vardimtests/test9.py
[1328/1831] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod
[1329/1831] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod
[1330/1831] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod
[1331/1831] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod
[1332/1831] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod
[1333/1831] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod
[1334/1831] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod
[1335/1831] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod
[1336/1831] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod
[1337/1831] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod
[1338/1831] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod
[1339/1831] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod
[1340/1831] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/common/catch2_main.cpp.o
[1341/1831] Building special[-core] for test group parallel
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"
MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
-> Compiling mod_func.cpp
-> NMODL .././follower.mod
-> NMODL .././gap.mod
-> NMODL .././name_clashes.mod
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
Translating gap.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
Thread Safe
Thread Safe
Translating follower.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Thread Safe
-> NMODL .././unitstest.mod
-> NMODL .././version_macros.mod
-> Compiling follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
Thread Safe
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
Thread Safe
-> Compiling gap.cpp
-> Compiling name_clashes.cpp
-> Compiling unitstest.cpp
-> Compiling version_macros.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1342/1831] Generating parallel/subworld/test/parallel_tests/test_subworld.py
[1343/1831] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py
[1344/1831] Linking CXX executable bin/test/nrn-benchmarks
[1345/1831] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py
[1346/1831] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py
[1347/1831] Generating parallel/bas/test/parallel_tests/test_bas.py
[1348/1831] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py
[1349/1831] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json
[1350/1831] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py
[1351/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial.inc
[1352/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial.mod
[1353/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial_pp.mod
[1354/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/bacur.mod
[1355/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/banocur.mod
[1356/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/fornetcon.mod
[1357/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/invlfire.mod
[1358/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/natrans.mod
[1359/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/netmove.mod
[1360/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/sample.mod
[1361/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/unitstest.mod
[1362/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/version_macros.mod
[1363/1831] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/watchrange.mod
[1364/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod
[1365/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod
[1366/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
[1367/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
[1368/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod
[1369/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod
[1370/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
[1371/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod
[1372/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
[1373/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
[1374/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
[1375/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod
[1376/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
[1377/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod
[1378/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod
[1379/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod
[1380/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod
[1381/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod
[1382/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod
[1383/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod
[1384/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod
[1385/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
[1386/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod
[1387/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
[1388/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod
[1389/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod
[1390/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod
[1391/1831] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod
[1392/1831] Building special[-core] for test group nmodl_tests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5
cfiles =
Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod"
MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o
-> Compiling mod_func.cpp
-> NMODL .././cadif.mod
-> NMODL .././disc.mod
-> NMODL .././fornetcon.mod
Translating disc.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
Notice: DISCRETE is not thread safe.
Notice: This mechanism cannot be used with CVODE
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
Translating cadif.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Thread Safe
Thread Safe
-> NMODL .././hhwatch.mod
-> NMODL .././k3st.mod
-> NMODL .././table.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
Thread Safe
Translating k3st.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
NEURON's CVode method ignores conservation
Thread Safe
-> NMODL .././variabletypes.mod
-> Compiling cadif.cpp
Translating table.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
Thread Safe
-> Compiling disc.cpp
Translating variabletypes.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
Thread Safe
-> Compiling fornetcon.cpp
-> Compiling hhwatch.cpp
-> Compiling k3st.cpp
-> Compiling table.cpp
-> Compiling variabletypes.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1393/1831] Generating nmodl_tests/test_table/test/nmodl/test_table.py
[1394/1831] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py
[1395/1831] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py
[1396/1831] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py
[1397/1831] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py
[1398/1831] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py
[1399/1831] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py
[1400/1831] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py
[1401/1831] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod
[1402/1831] Building CXX object test/coreneuron/unit/cmdline_interface/CMakeFiles/cmd_interface_test_bin.dir/test_cmdline_interface.cpp.o
[1403/1831] Linking CXX executable bin/cmd_interface_test_bin
[1404/1831] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
[1405/1831] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod
[1406/1831] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod
[1407/1831] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod
[1408/1831] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod
[1409/1831] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
[1410/1831] Building CXX object test/coreneuron/unit/interleave_info/CMakeFiles/interleave_info_bin.dir/check_constructors.cpp.o
[1411/1831] Linking CXX executable bin/interleave_info_bin
[1412/1831] Generating ../tests/testcorenrn/reference/out_vecevent.spk
[1413/1831] Generating ../tests/testcorenrn/reference/out_watch.spk
[1414/1831] Generating ../tests/testcorenrn/reference/out_netstimdirect.spk
[1415/1831] Building CXX object test/coreneuron/unit/alignment/CMakeFiles/alignment_test_bin.dir/alignment.cpp.o
[1416/1831] Linking CXX executable bin/alignment_test_bin
[1417/1831] Building CXX object test/coreneuron/unit/queueing/CMakeFiles/queuing_test_bin.dir/test_queueing.cpp.o
[1418/1831] Linking CXX executable bin/queuing_test_bin
[1419/1831] Building special[-core] for test group external_ringtest
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff
cfiles =
Mod files: "./halfgap.mod"
MODOBJS= ./halfgap.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/halfgap.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Parsing Units
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
Thread Safe
-> Compiling halfgap.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1420/1831] Generating ../../external_ringtest/neuron/cell.hoc
[1421/1831] Generating ../../external_ringtest/neuron/args.py
[1422/1831] Generating ../../external_ringtest/neuron/commonutils.py
[1423/1831] Generating ../../external_ringtest/neuron/celluniform.hoc
[1424/1831] Generating ../../external_ringtest/neuron/ring.py
[1425/1831] Generating ../../external_ringtest/neuron/ranparm.py
[1426/1831] Generating ../../external_ringtest/neuron/ringtest.py
[1427/1831] Generating ../../external_ringtest/neuron/ringuniform.py
[1428/1831] Generating ../../external_ringtest/neuron/settings.py
[1429/1831] Generating ../../external_ringtest/neuron_mpi/args.py
[1430/1831] Generating ../../external_ringtest/neuron_mpi/cell.hoc
[1431/1831] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc
[1432/1831] Generating ../../external_ringtest/neuron_mpi/commonutils.py
[1433/1831] Generating ../../external_ringtest/neuron_mpi/ranparm.py
[1434/1831] Generating ../../external_ringtest/neuron_mpi/ring.py
[1435/1831] Generating ../../external_ringtest/neuron_mpi/ringtest.py
[1436/1831] Generating ../../external_ringtest/neuron_mpi/ringuniform.py
[1437/1831] Generating ../../external_ringtest/neuron_mpi/settings.py
[1438/1831] Generating ../../external_ringtest/neuron_mpi_python/args.py
[1439/1831] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc
[1440/1831] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc
[1441/1831] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py
[1442/1831] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py
[1443/1831] Generating ../../external_ringtest/neuron_mpi_python/ring.py
[1444/1831] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py
[1445/1831] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py
[1446/1831] Generating ../../external_ringtest/neuron_mpi_python/settings.py
[1447/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py
[1448/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc
[1449/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc
[1450/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py
[1451/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py
[1452/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py
[1453/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py
[1454/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py
[1455/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py
[1456/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc
[1457/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py
[1458/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc
[1459/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py
[1460/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py
[1461/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py
[1462/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py
[1463/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py
[1464/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py
[1465/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py
[1466/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc
[1467/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc
[1468/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py
[1469/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py
[1470/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py
[1471/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py
[1472/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py
[1473/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py
[1474/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py
[1475/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py
[1476/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc
[1477/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py
[1478/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc
[1479/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py
[1480/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py
[1481/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py
[1482/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py
[1483/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc
[1484/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc
[1485/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py
[1486/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py
[1487/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py
[1488/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py
[1489/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py
[1490/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py
[1491/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py
[1492/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py
[1493/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc
[1494/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py
[1495/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc
[1496/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py
[1497/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py
[1498/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py
[1499/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py
[1500/1831] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py
[1501/1831] Building CXX object test/coreneuron/unit/lfp/CMakeFiles/lfp_test_bin.dir/lfp.cpp.o
[1502/1831] Linking CXX executable bin/lfp_test_bin
[1503/1831] Building CXX object test/coreneuron/unit/solver/CMakeFiles/test-solver.dir/test_solver.cpp.o
[1504/1831] Linking CXX executable bin/test-solver
[1505/1831] Building special[-core] for test group example_nmodl
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2
cfiles =
Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod"
MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o
-> Compiling mod_func.cpp
-> NMODL .././argpass.mod
-> NMODL .././cabpump.mod
-> NMODL .././cachan.mod
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Translating cachan.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
Translating argpass.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
Notice: VERBATIM blocks are not thread safe
Thread Safe
-> NMODL .././cacum.mod
-> NMODL .././cacur.mod
-> NMODL .././cadif.mod
Translating cacum.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
Thread Safe
Translating cadif.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
Thread Safe
Translating cacur.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
Thread Safe
-> NMODL .././cadifusl.mod
-> NMODL .././cagk.mod
-> NMODL .././cagkftab.mod
Translating cadifusl.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Translating cagk.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
Thread Safe
Translating cagkftab.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
-> NMODL .././capmp.mod
Thread Safe
-> NMODL .././expsynspine.mod
-> NMODL .././fh.mod
Translating capmp.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
NEURON's CVode method ignores conservation
Translating expsynspine.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
Thread Safe
Notice: LINEAR is not thread safe.
Translating fh.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
INCLUDEing standard.inc
Notice: Assignment to the GLOBAL variable, "inf", is not thread safe
Notice: Assignment to the GLOBAL variable, "tau", is not thread safe
-> NMODL .././fit1.mod
-> NMODL .././gap.mod
-> NMODL .././hh1.mod
Translating gap.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
Notice: Use of POINTER is not thread safe.
Translating fit1.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
Notice: VERBATIM blocks are not thread safe
-> NMODL .././hhvect.mod
Translating hh1.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp
Notice: This mechanism cannot be used with CVODE
Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe
Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "minf", is not thread safe
Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
-> NMODL .././inatest.mod
-> NMODL .././ionleak.mod
-> NMODL .././nacum.mod
Translating hhvect.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
Translating inatest.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp
Thread Safe
-> NMODL .././nacur.mod
Translating ionleak.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp
Thread Safe
Translating nacum.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp
-> NMODL .././nadifl.mod
Thread Safe
-> NMODL .././nonlin.mod
-> NMODL .././obj_ex.mod
Translating nacur.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp
Thread Safe
Translating nadifl.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp
Thread Safe
-> NMODL .././order.mod
Translating nonlin.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp
Notice: NONLINEAR is not thread safe.
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
-> NMODL .././passiv.mod
Translating obj_ex.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp
Thread Safe
-> NMODL .././rchan.mod
-> NMODL .././stim1.mod
Translating order.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp
Thread Safe
Translating passiv.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp
Thread Safe
-> NMODL .././str.mod
Translating rchan.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp
Notice: normrand is not thread safe
Notice: This mechanism cannot be used with CVODE
-> NMODL .././syn1.mod
Translating stim1.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp
Thread Safe
-> NMODL .././synpre.mod
-> NMODL .././trivial.mod
Translating str.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp
Notice: VERBATIM blocks are not thread safe
Translating syn1.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp
Thread Safe
-> NMODL .././tstdarray.mod
Translating synpre.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
-> NMODL .././tstextrn.mod
Translating trivial.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp
-> NMODL .././tstpnt1.mod
-> NMODL .././tstpnt2.mod
Translating tstdarray.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp
Thread Safe
Translating tstextrn.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp
Notice: Use of EXTERNAL is not thread safe.
Translating tstpnt1.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp
Notice: Use of POINTER is not thread safe.
-> NMODL .././tstvec.mod
-> NMODL .././vclmp1.mod
Translating tstpnt2.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp
Notice: Use of POINTER is not thread safe.
-> NMODL .././vlag.mod
-> Compiling argpass.cpp
Translating tstvec.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp
Notice: VERBATIM blocks are not thread safe
Translating vclmp1.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
Notice: LINEAR is not thread safe.
Translating vlag.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp
Thread Safe
-> Compiling cabpump.cpp
-> Compiling cachan.cpp
-> Compiling cacum.cpp
-> Compiling cacur.cpp
-> Compiling cadif.cpp
-> Compiling cadifusl.cpp
-> Compiling cagk.cpp
-> Compiling cagkftab.cpp
-> Compiling capmp.cpp
-> Compiling expsynspine.cpp
-> Compiling fh.cpp
-> Compiling fit1.cpp
-> Compiling gap.cpp
-> Compiling hh1.cpp
-> Compiling hhvect.cpp
-> Compiling inatest.cpp
-> Compiling ionleak.cpp
-> Compiling nacum.cpp
-> Compiling nacur.cpp
-> Compiling nadifl.cpp
-> Compiling nonlin.cpp
-> Compiling obj_ex.cpp
-> Compiling order.cpp
-> Compiling passiv.cpp
-> Compiling rchan.cpp
-> Compiling stim1.cpp
-> Compiling str.cpp
-> Compiling syn1.cpp
-> Compiling synpre.cpp
-> Compiling trivial.cpp
-> Compiling tstdarray.cpp
-> Compiling tstextrn.cpp
-> Compiling tstpnt1.cpp
-> Compiling tstpnt2.cpp
-> Compiling tstvec.cpp
-> Compiling vclmp1.cpp
-> Compiling vlag.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1506/1831] Generating example_nmodl/cabpump_hoc/cabpump.hoc
[1507/1831] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc
[1508/1831] Generating example_nmodl/cachan_hoc/cachan.hoc
[1509/1831] Generating example_nmodl/cadif_hoc/cadif.hoc
[1510/1831] Generating example_nmodl/cadif_hoc/cadif.ses
[1511/1831] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc
[1512/1831] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc
[1513/1831] Generating example_nmodl/cagk_hoc/cagk.hoc
[1514/1831] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc
[1515/1831] Generating example_nmodl/capmp_hoc/capmp.hoc
[1516/1831] Generating example_nmodl/fit1_hoc/fit1.hoc
[1517/1831] Generating example_nmodl/gap_hoc/gap.hoc
[1518/1831] Generating example_nmodl/cv_hoc/cv.hoc
[1519/1831] Generating example_nmodl/fh_hoc/fh.hoc
[1520/1831] Generating example_nmodl/hh1_hoc/hh1.hoc
[1521/1831] Generating example_nmodl/hhvect_hoc/hhvect.hoc
[1522/1831] Generating example_nmodl/nacum_hoc/nacum.hoc
[1523/1831] Generating example_nmodl/nadifl1_hoc/nadifl1.ses
[1524/1831] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc
[1525/1831] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc
[1526/1831] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc
[1527/1831] Generating example_nmodl/nadifl3_hoc/nadifl3.ses
[1528/1831] Generating example_nmodl/nadifl4_hoc/nadifl4.ses
[1529/1831] Generating example_nmodl/nadifl2_hoc/nadifl2.ses
[1530/1831] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc
[1531/1831] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc
[1532/1831] Generating example_nmodl/stim1_hoc/stim1.hoc
[1533/1831] Generating example_nmodl/order_hoc/order.hoc
[1534/1831] Generating example_nmodl/passiv_hoc/passiv.hoc
[1535/1831] Generating example_nmodl/syn1_hoc/syn1.hoc
[1536/1831] Generating example_nmodl/synpre_hoc/synpre.hoc
[1537/1831] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc
[1538/1831] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc
[1539/1831] Generating example_nmodl/tstvec_hoc/tstvec.hoc
[1540/1831] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc
[1541/1831] Generating example_nmodl/cagkftab_py/cagkftab.py
[1542/1831] Generating example_nmodl/expsynspine_py/expsynspine.ses
[1543/1831] Generating example_nmodl/nonlin_py/nonlin.py
[1544/1831] Generating example_nmodl/expsynspine_py/expsynspine.py
[1545/1831] Generating example_nmodl/tstpnt1_py/tstpnt1.py
[1546/1831] Generating example_nmodl/tstpnt2_py/tstpnt2.py
[1547/1831] Generating example_nmodl/vlag_py/vlag.py
[1548/1831] Building special[-core] for test group testcorenrn_bbcore
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876
cfiles =
Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod"
MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhderiv.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhkin.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhwatch.mod
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse
[NMODL] [info] :: Running sympy solve visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nacum.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././Gfluct3.mod
-> NMODL .././hhderiv.mod
-> NMODL .././hhkin.mod
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
Thread Safe
Translating hhderiv.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
Translating hhkin.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
Thread Safe
Thread Safe
-> NMODL .././hhwatch.mod
-> NMODL .././nacum.mod
-> NMODL .././vecevent.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
Thread Safe
Translating nacum.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Thread Safe
-> Compiling Gfluct3.cpp
-> Compiling hhderiv.cpp
-> Compiling hhkin.cpp
-> Compiling hhwatch.cpp
-> Compiling nacum.cpp
-> Compiling vecevent.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1549/1831] Generating ../../testcorenrn_bbcore/neuron/common.hoc
[1550/1831] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc
[1551/1831] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc
[1552/1831] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc
[1553/1831] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc
[1554/1831] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc
[1555/1831] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc
[1556/1831] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1557/1831] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc
[1558/1831] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc
[1559/1831] Generating ../../testcorenrn_conc/neuron/common.hoc
[1560/1831] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc
[1561/1831] Generating ../../testcorenrn_conc/neuron/defvar.hoc
[1562/1831] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc
[1563/1831] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc
[1564/1831] Generating ../../testcorenrn_conc/neuron/testconc.hoc
[1565/1831] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc
[1566/1831] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc
[1567/1831] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1568/1831] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc
[1569/1831] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc
[1570/1831] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc
[1571/1831] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc
[1572/1831] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc
[1573/1831] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc
[1574/1831] Generating ../../testcorenrn_deriv/neuron/common.hoc
[1575/1831] Generating ../../testcorenrn_deriv/neuron/defvar.hoc
[1576/1831] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc
[1577/1831] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc
[1578/1831] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc
[1579/1831] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1580/1831] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc
[1581/1831] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc
[1582/1831] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc
[1583/1831] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc
[1584/1831] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc
[1585/1831] Generating ../../testcorenrn_gf/neuron/common.hoc
[1586/1831] Generating ../../testcorenrn_gf/neuron/defvar.hoc
[1587/1831] Generating ../../testcorenrn_gf/neuron/testgf.hoc
[1588/1831] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1589/1831] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc
[1590/1831] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc
[1591/1831] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc
[1592/1831] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc
[1593/1831] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc
[1594/1831] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc
[1595/1831] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc
[1596/1831] Generating ../../testcorenrn_kin/neuron/common.hoc
[1597/1831] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc
[1598/1831] Generating ../../testcorenrn_kin/neuron/defvar.hoc
[1599/1831] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc
[1600/1831] Generating ../../testcorenrn_kin/neuron/testkin.hoc
[1601/1831] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc
[1602/1831] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1603/1831] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc
[1604/1831] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc
[1605/1831] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc
[1606/1831] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc
[1607/1831] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc
[1608/1831] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc
[1609/1831] Generating ../../testcorenrn_patstim/neuron/common.hoc
[1610/1831] Generating ../../testcorenrn_patstim/neuron/defvar.hoc
[1611/1831] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc
[1612/1831] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc
[1613/1831] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc
[1614/1831] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc
[1615/1831] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc
[1616/1831] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc
[1617/1831] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc
[1618/1831] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc
[1619/1831] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc
[1620/1831] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc
[1621/1831] Generating ../../testcorenrn_vecplay/neuron/common.hoc
[1622/1831] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc
[1623/1831] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc
[1624/1831] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc
[1625/1831] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1626/1831] Generating ../../testcorenrn_vecevent/neuron/common.hoc
[1627/1831] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc
[1628/1831] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc
[1629/1831] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc
[1630/1831] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc
[1631/1831] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc
[1632/1831] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc
[1633/1831] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc
[1634/1831] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc
[1635/1831] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc
[1636/1831] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc
[1637/1831] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1638/1831] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc
[1639/1831] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc
[1640/1831] Generating ../../testcorenrn_watch/neuron/testwatch.hoc
[1641/1831] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc
[1642/1831] Generating ../../testcorenrn_watch/neuron/common.hoc
[1643/1831] Generating ../../testcorenrn_watch/neuron/defvar.hoc
[1644/1831] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc
[1645/1831] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc
[1646/1831] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc
[1647/1831] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc
[1648/1831] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc
[1649/1831] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc
[1650/1831] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc
[1651/1831] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1652/1831] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc
[1653/1831] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc
[1654/1831] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc
[1655/1831] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc
[1656/1831] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc
[1657/1831] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc
[1658/1831] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc
[1659/1831] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc
[1660/1831] Building special[-core] for test group coreneuron_modtests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30
cfiles =
Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod"
MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./invlfire.o ./natrans.o ./netmove.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial_pp.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bacur.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/banocur.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/fornetcon.mod
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfire.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netmove.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/natrans.mod
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/sample.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/watchrange.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././axial.mod
-> NMODL .././axial_pp.mod
-> NMODL .././bacur.mod
Translating axial.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/axial.cpp
Translating axial_pp.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/axial_pp.cpp
INCLUDEing axial.inc
INCLUDEing axial.inc
Thread Safe
Translating bacur.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/bacur.cpp
Thread Safe
Thread Safe
-> NMODL .././banocur.mod
-> NMODL .././fornetcon.mod
-> NMODL .././invlfire.mod
Translating banocur.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/banocur.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/invlfire.cpp
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/fornetcon.cpp
Thread Safe
Thread Safe
-> NMODL .././natrans.mod
-> NMODL .././netmove.mod
-> NMODL .././sample.mod
Translating natrans.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/natrans.cpp
Thread Safe
Translating netmove.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/netmove.cpp
Thread Safe
Translating sample.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/sample.cpp
Thread Safe
-> NMODL .././unitstest.mod
-> NMODL .././version_macros.mod
-> NMODL .././watchrange.mod
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/version_macros.cpp
Thread Safe
Translating watchrange.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/watchrange.cpp
Thread Safe
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/unitstest.cpp
-> Compiling axial.cpp
Thread Safe
-> Compiling axial_pp.cpp
-> Compiling bacur.cpp
-> Compiling banocur.cpp
-> Compiling fornetcon.cpp
-> Compiling invlfire.cpp
-> Compiling natrans.cpp
-> Compiling netmove.cpp
-> Compiling sample.cpp
-> Compiling unitstest.cpp
-> Compiling version_macros.cpp
-> Compiling watchrange.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1661/1831] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py
[1662/1831] Generating coreneuron_modtests/version_macros/test/pytest_coreneuron/test_version_macros.py
[1663/1831] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1664/1831] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py
[1665/1831] Generating coreneuron_modtests/inputpresyn_py/test/coreneuron/test_inputpresyn.py
[1666/1831] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc
[1667/1831] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py
[1668/1831] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py
[1669/1831] Generating coreneuron_modtests/fast_imem_py_cpu/test/pytest_coreneuron/test_fast_imem.py
[1670/1831] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py
[1671/1831] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py
[1672/1831] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py
[1673/1831] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py
[1674/1831] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py
[1675/1831] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py
[1676/1831] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py
[1677/1831] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py
[1678/1831] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1679/1831] Building special[-core] for test group reduced_dentate
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead
cfiles =
Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod"
MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_CadepK.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Ca.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KA.mod
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRf.mod
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/CaBK.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRs.mod
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Na.mod
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_M.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_sAHP.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_UK.mod
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_KIn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/LcaMig.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_na8st.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse
[NMODL] [info] :: Running sympy solve visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bgka.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ccanl.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gskch.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ggap.mod
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/holdingi.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hyperde3.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ichan2.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/iconc_Ca.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/kcaPR.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/na3n.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nca.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/spines.mod
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/tca.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././Aradi_Ca.mod
-> NMODL .././Aradi_CadepK.mod
-> NMODL .././Aradi_KA.mod
Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp
Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp
Translating Aradi_KA.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp
Thread Safe
Thread Safe
Thread Safe
-> NMODL .././Aradi_KDRf.mod
-> NMODL .././Aradi_KDRs.mod
-> NMODL .././Aradi_Na.mod
Translating Aradi_Na.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp
Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp
Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp
Thread Safe
Thread Safe
Thread Safe
-> NMODL .././CaBK.mod
-> NMODL .././DGC_M.mod
-> NMODL .././DGC_UK.mod
Translating DGC_M.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp
Translating CaBK.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp
Translating DGC_UK.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp
Thread Safe
Thread Safe
Thread Safe
-> NMODL .././DGC_sAHP.mod
-> NMODL .././Gfluct3.mod
-> NMODL .././LcaMig.mod
-> NMODL .././SH_KIn.mod
Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp
Translating LcaMig.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp
Thread Safe
Thread Safe
Thread Safe
Translating SH_KIn.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp
-> NMODL .././bgka.mod
-> NMODL .././SH_na8st.mod
Thread Safe
-> NMODL .././ccanl.mod
-> NMODL .././ggap.mod
Translating ccanl.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp
Translating SH_na8st.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp
Translating bgka.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp
NEURON's CVode method ignores conservation
Thread Safe
Thread Safe
Thread Safe
Translating ggap.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp
Thread Safe
-> NMODL .././gskch.mod
-> NMODL .././holdingi.mod
-> NMODL .././hyperde3.mod
-> NMODL .././ichan2.mod
Translating hyperde3.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp
Translating holdingi.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp
Translating gskch.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp
Thread Safe
Thread Safe
Thread Safe
Translating ichan2.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp
Thread Safe
-> NMODL .././iconc_Ca.mod
-> NMODL .././kcaPR.mod
-> NMODL .././na3n.mod
-> NMODL .././nca.mod
Translating iconc_Ca.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp
Translating kcaPR.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp
Translating na3n.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp
Thread Safe
Thread Safe
Thread Safe
Translating nca.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp
Thread Safe
-> NMODL .././spines.mod
-> NMODL .././tca.mod
-> NMODL .././vecevent.mod
-> Compiling Aradi_Ca.cpp
Translating tca.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp
Translating spines.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp
Thread Safe
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Thread Safe
-> Compiling Aradi_KA.cpp
-> Compiling Aradi_CadepK.cpp
-> Compiling Aradi_KDRf.cpp
-> Compiling Aradi_KDRs.cpp
-> Compiling Aradi_Na.cpp
-> Compiling CaBK.cpp
-> Compiling DGC_M.cpp
-> Compiling DGC_UK.cpp
-> Compiling DGC_sAHP.cpp
-> Compiling Gfluct3.cpp
-> Compiling LcaMig.cpp
-> Compiling SH_KIn.cpp
-> Compiling SH_na8st.cpp
-> Compiling bgka.cpp
-> Compiling ccanl.cpp
-> Compiling ggap.cpp
-> Compiling gskch.cpp
-> Compiling holdingi.cpp
-> Compiling hyperde3.cpp
-> Compiling ichan2.cpp
-> Compiling iconc_Ca.cpp
-> Compiling kcaPR.cpp
-> Compiling na3n.cpp
-> Compiling nca.cpp
-> Compiling spines.cpp
-> Compiling tca.cpp
-> Compiling vecevent.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1680/1831] Generating ../../reduced_dentate/neuron/commonutils.py
[1681/1831] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat
[1682/1831] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat
[1683/1831] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat
[1684/1831] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat
[1685/1831] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat
[1686/1831] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat
[1687/1831] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat
[1688/1831] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat
[1689/1831] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat
[1690/1831] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat
[1691/1831] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat
[1692/1831] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat
[1693/1831] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat
[1694/1831] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat
[1695/1831] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat
[1696/1831] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat
[1697/1831] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat
[1698/1831] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat
[1699/1831] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat
[1700/1831] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat
[1701/1831] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat
[1702/1831] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat
[1703/1831] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat
[1704/1831] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat
[1705/1831] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat
[1706/1831] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat
[1707/1831] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat
[1708/1831] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat
[1709/1831] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat
[1710/1831] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat
[1711/1831] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat
[1712/1831] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat
[1713/1831] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat
[1714/1831] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat
[1715/1831] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat
[1716/1831] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat
[1717/1831] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat
[1718/1831] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat
[1719/1831] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat
[1720/1831] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat
[1721/1831] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat
[1722/1831] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat
[1723/1831] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat
[1724/1831] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat
[1725/1831] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat
[1726/1831] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat
[1727/1831] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat
[1728/1831] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat
[1729/1831] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat
[1730/1831] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat
[1731/1831] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat
[1732/1831] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat
[1733/1831] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat
[1734/1831] Generating ../../reduced_dentate/neuron/lib.hoc
[1735/1831] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat
[1736/1831] Generating ../../reduced_dentate/neuron/main.hoc
[1737/1831] Generating ../../reduced_dentate/neuron/parameters/Control.hoc
[1738/1831] Generating ../../reduced_dentate/neuron/run.hoc
[1739/1831] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc
[1740/1831] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc
[1741/1831] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc
[1742/1831] Generating ../../reduced_dentate/neuron/templates/DGC.hoc
[1743/1831] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc
[1744/1831] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc
[1745/1831] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc
[1746/1831] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc
[1747/1831] Generating ../../reduced_dentate/neuron/templates/Dict.hoc
[1748/1831] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc
[1749/1831] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc
[1750/1831] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc
[1751/1831] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc
[1752/1831] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc
[1753/1831] Generating ../../reduced_dentate/neuron/templates/Value.hoc
[1754/1831] Generating ../../reduced_dentate/neuron/templates/defvar.hoc
[1755/1831] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat
[1756/1831] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py
[1757/1831] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc
[1758/1831] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat
[1759/1831] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat
[1760/1831] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat
[1761/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat
[1762/1831] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat
[1763/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat
[1764/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat
[1765/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat
[1766/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat
[1767/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat
[1768/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat
[1769/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat
[1770/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat
[1771/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat
[1772/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat
[1773/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat
[1774/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat
[1775/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat
[1776/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat
[1777/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat
[1778/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat
[1779/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat
[1780/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat
[1781/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat
[1782/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat
[1783/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat
[1784/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat
[1785/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat
[1786/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat
[1787/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat
[1788/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat
[1789/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat
[1790/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat
[1791/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat
[1792/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat
[1793/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat
[1794/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat
[1795/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat
[1796/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat
[1797/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat
[1798/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat
[1799/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat
[1800/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat
[1801/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat
[1802/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat
[1803/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat
[1804/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat
[1805/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat
[1806/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat
[1807/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat
[1808/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat
[1809/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat
[1810/1831] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat
[1811/1831] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc
[1812/1831] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc
[1813/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc
[1814/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc
[1815/1831] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc
[1816/1831] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc
[1817/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc
[1818/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc
[1819/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc
[1820/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc
[1821/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc
[1822/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc
[1823/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc
[1824/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc
[1825/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc
[1826/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc
[1827/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc
[1828/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc
[1829/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc
[1830/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc
[1831/1831] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc
$ ccache -vs 2>/dev/null
Cache directory: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/ccache
Config file: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf
Stats updated: Mon Oct 2 16:20:31 2023
Cacheable calls: 575 / 575 (100.0%)
Hits: 0 / 575 ( 0.00%)
Direct: 0
Preprocessed: 0
Misses: 575 / 575 (100.0%)
Successful lookups:
Direct: 0 / 575 ( 0.00%)
Preprocessed: 0 / 575 ( 0.00%)
Local storage:
Cache size (GB): 0.91 / 5.00 (18.27%)
Files: 7567
Hits: 0 / 575 ( 0.00%)
Misses: 575 / 575 (100.0%)
Reads: 1150
Writes: 1083
$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg
$ cat src/nrnpython/setup.cfg
[install]
prefix=
$ ctest --output-on-failure
Test project /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build
Start 215: external_ringtest::coreneuron_cpu_mpi_offline::preparation
Start 223: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
1/274 Test #223: testcorenrn_bbcore::coreneuron_cpu_offline::preparation .................. Passed 1.03 sec
Start 229: testcorenrn_conc::coreneuron_cpu_offline::preparation
2/274 Test #229: testcorenrn_conc::coreneuron_cpu_offline::preparation .................... Passed 0.28 sec
Start 235: testcorenrn_deriv::coreneuron_cpu_offline::preparation
3/274 Test #235: testcorenrn_deriv::coreneuron_cpu_offline::preparation ................... Passed 0.30 sec
Start 247: testcorenrn_kin::coreneuron_cpu_offline::preparation
4/274 Test #215: external_ringtest::coreneuron_cpu_mpi_offline::preparation ............... Passed 1.78 sec
Start 241: testcorenrn_gf::coreneuron_cpu_offline::preparation
5/274 Test #247: testcorenrn_kin::coreneuron_cpu_offline::preparation ..................... Passed 0.30 sec
Start 134: pyinit::nrniv_py3.10_python_check_sys_path::preparation
6/274 Test #134: pyinit::nrniv_py3.10_python_check_sys_path::preparation .................. Passed 0.02 sec
Start 136: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation
7/274 Test #136: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ............... Passed 0.02 sec
Start 138: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation
8/274 Test #138: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................ Passed 0.02 sec
Start 140: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation
9/274 Test #140: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation ............. Passed 0.02 sec
Start 142: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation
10/274 Test #142: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ........... Passed 0.02 sec
Start 144: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation
11/274 Test #144: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........ Passed 0.02 sec
Start 146: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation
12/274 Test #146: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ........... Passed 0.02 sec
Start 148: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation
13/274 Test #148: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........ Passed 0.02 sec
Start 150: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation
14/274 Test #150: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ...... Passed 0.02 sec
Start 152: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation
15/274 Test #241: testcorenrn_gf::coreneuron_cpu_offline::preparation ...................... Passed 0.31 sec
Start 252: testcorenrn_patstim::coreneuron_cpu_offline::preparation
16/274 Test #152: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ... Passed 0.02 sec
Start 154: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation
17/274 Test #154: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation ....... Passed 0.02 sec
Start 156: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation
18/274 Test #156: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation .... Passed 0.02 sec
Start 158: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation
19/274 Test #158: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........ Passed 0.02 sec
Start 160: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation
20/274 Test #160: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation ..... Passed 0.02 sec
Start 162: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation
21/274 Test #162: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation ....... Passed 0.02 sec
Start 164: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation
22/274 Test #164: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation .... Passed 0.02 sec
Start 170: pyinit::nrniv_pydef_python_check_sys_path::preparation
23/274 Test #170: pyinit::nrniv_pydef_python_check_sys_path::preparation ................... Passed 0.02 sec
Start 172: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
24/274 Test #172: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................ Passed 0.02 sec
Start 174: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
25/274 Test #174: pyinit::nrniv_pydef_python_check_sys_prefix::preparation ................. Passed 0.02 sec
Start 176: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
26/274 Test #176: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation .............. Passed 0.02 sec
Start 178: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
27/274 Test #178: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............ Passed 0.02 sec
Start 180: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
28/274 Test #180: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation ......... Passed 0.02 sec
Start 182: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
29/274 Test #182: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............ Passed 0.02 sec
Start 184: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
30/274 Test #184: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation ......... Passed 0.02 sec
Start 186: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
31/274 Test #186: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation ....... Passed 0.02 sec
Start 188: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
32/274 Test #252: testcorenrn_patstim::coreneuron_cpu_offline::preparation ................. Passed 0.32 sec
Start 258: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
33/274 Test #188: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation .... Passed 0.02 sec
Start 190: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
34/274 Test #190: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........ Passed 0.02 sec
Start 192: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
35/274 Test #192: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation ..... Passed 0.02 sec
Start 194: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
36/274 Test #194: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation ......... Passed 0.02 sec
Start 196: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
37/274 Test #196: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ...... Passed 0.02 sec
Start 198: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
38/274 Test #198: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........ Passed 0.02 sec
Start 200: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
39/274 Test #200: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation ..... Passed 0.02 sec
Start 208: external_ringtest::neuron
40/274 Test #258: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ................. Passed 0.30 sec
Start 270: testcorenrn_watch::coreneuron_cpu_offline::preparation
41/274 Test #270: testcorenrn_watch::coreneuron_cpu_offline::preparation ................... Passed 0.30 sec
Start 209: external_ringtest::neuron_mpi
42/274 Test #209: external_ringtest::neuron_mpi ............................................ Passed 2.34 sec
Start 210: external_ringtest::neuron_mpi_python
43/274 Test #208: external_ringtest::neuron ................................................ Passed 4.11 sec
Start 219: testcorenrn_bbcore::neuron
44/274 Test #219: testcorenrn_bbcore::neuron ............................................... Passed 0.30 sec
Start 220: testcorenrn_bbcore::coreneuron_cpu_online
45/274 Test #220: testcorenrn_bbcore::coreneuron_cpu_online ................................ Passed 0.54 sec
Start 221: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
46/274 Test #221: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ............... Passed 0.64 sec
Start 222: testcorenrn_bbcore::coreneuron_cpu_offline
47/274 Test #210: external_ringtest::neuron_mpi_python ..................................... Passed 2.79 sec
Start 211: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
48/274 Test #222: testcorenrn_bbcore::coreneuron_cpu_offline ............................... Passed 0.40 sec
Start 225: testcorenrn_conc::neuron
49/274 Test #225: testcorenrn_conc::neuron ................................................. Passed 0.34 sec
Start 226: testcorenrn_conc::coreneuron_cpu_online
50/274 Test #226: testcorenrn_conc::coreneuron_cpu_online .................................. Passed 0.56 sec
Start 227: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
51/274 Test #211: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................ Passed 1.81 sec
Start 212: external_ringtest::coreneuron_cpu_mpi
52/274 Test #227: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ................. Passed 0.61 sec
Start 228: testcorenrn_conc::coreneuron_cpu_offline
53/274 Test #228: testcorenrn_conc::coreneuron_cpu_offline ................................. Passed 0.27 sec
Start 231: testcorenrn_deriv::neuron
54/274 Test #231: testcorenrn_deriv::neuron ................................................ Passed 0.33 sec
Start 232: testcorenrn_deriv::coreneuron_cpu_online
55/274 Test #212: external_ringtest::coreneuron_cpu_mpi .................................... Passed 0.95 sec
Start 213: external_ringtest::coreneuron_cpu_mpi_python
56/274 Test #232: testcorenrn_deriv::coreneuron_cpu_online ................................. Passed 0.58 sec
Start 233: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
57/274 Test #233: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................ Passed 0.82 sec
Start 234: testcorenrn_deriv::coreneuron_cpu_offline
58/274 Test #213: external_ringtest::coreneuron_cpu_mpi_python ............................. Passed 1.34 sec
Start 214: external_ringtest::coreneuron_cpu_mpi_offline
59/274 Test #234: testcorenrn_deriv::coreneuron_cpu_offline ................................ Passed 0.26 sec
Start 243: testcorenrn_kin::neuron
60/274 Test #243: testcorenrn_kin::neuron .................................................. Passed 0.31 sec
Start 244: testcorenrn_kin::coreneuron_cpu_online
61/274 Test #214: external_ringtest::coreneuron_cpu_mpi_offline ............................ Passed 0.53 sec
Start 237: testcorenrn_gf::neuron
62/274 Test #244: testcorenrn_kin::coreneuron_cpu_online ................................... Passed 0.56 sec
Start 245: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
63/274 Test #245: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate .................. Passed 0.60 sec
Start 246: testcorenrn_kin::coreneuron_cpu_offline
64/274 Test #246: testcorenrn_kin::coreneuron_cpu_offline .................................. Passed 0.27 sec
Start 1: cmd_interface_test
65/274 Test #1: cmd_interface_test ....................................................... Passed 0.36 sec
Start 2: interleave_info_constructor_test
66/274 Test #2: interleave_info_constructor_test ......................................... Passed 0.22 sec
Start 3: alignment_test
67/274 Test #237: testcorenrn_gf::neuron ................................................... Passed 2.00 sec
Start 238: testcorenrn_gf::coreneuron_cpu_online
68/274 Test #3: alignment_test ........................................................... Passed 0.21 sec
Start 4: queuing_test
69/274 Test #4: queuing_test ............................................................. Passed 0.22 sec
Start 5: test-solver
70/274 Test #5: test-solver .............................................................. Passed 0.32 sec
Start 6: lfp_test
71/274 Test #238: testcorenrn_gf::coreneuron_cpu_online .................................... Passed 0.71 sec
Start 239: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
72/274 Test #6: lfp_test ................................................................. Passed 0.42 sec
Start 7: unit_tests::testneuron
73/274 Test #7: unit_tests::testneuron ................................................... Passed 0.28 sec
Start 8: unit_tests::testneuron_soa_erase_calls_terminate
74/274 Test #8: unit_tests::testneuron_soa_erase_calls_terminate ......................... Passed 0.10 sec
Start 9: ringtest
75/274 Test #9: ringtest ................................................................. Passed 0.51 sec
Start 10: connect_dend
76/274 Test #10: connect_dend ............................................................. Passed 0.16 sec
Start 11: mpi_init::nrniv_mpiopt
77/274 Test #11: mpi_init::nrniv_mpiopt ................................................... Passed 0.33 sec
Start 12: mpi_init::nrniv_nrnmpi_init
78/274 Test #239: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ................... Passed 1.84 sec
Start 240: testcorenrn_gf::coreneuron_cpu_offline
79/274 Test #12: mpi_init::nrniv_nrnmpi_init .............................................. Passed 0.33 sec
Start 13: mpi_init::python_nrnmpi_init
80/274 Test #240: testcorenrn_gf::coreneuron_cpu_offline ................................... Passed 0.50 sec
Start 249: testcorenrn_patstim::neuron
81/274 Test #13: mpi_init::python_nrnmpi_init ............................................. Passed 0.69 sec
Start 14: mpi_init::python_mpienv
82/274 Test #249: testcorenrn_patstim::neuron .............................................. Passed 0.42 sec
Start 250: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
83/274 Test #14: mpi_init::python_mpienv .................................................. Passed 0.70 sec
Start 15: mpi_init::nrniv_mpiexec_mpiopt
84/274 Test #15: mpi_init::nrniv_mpiexec_mpiopt ........................................... Passed 0.26 sec
Start 16: mpi_init::nrniv_mpiexec_nrnmpi_init
85/274 Test #250: testcorenrn_patstim::coreneuron_cpu_offline_saverestore .................. Passed 1.03 sec
Start 251: testcorenrn_patstim::coreneuron_cpu_offline
86/274 Test #16: mpi_init::nrniv_mpiexec_nrnmpi_init ...................................... Passed 0.26 sec
Start 17: mpi_init::python_mpiexec_nrnmpi_init
87/274 Test #251: testcorenrn_patstim::coreneuron_cpu_offline .............................. Passed 0.27 sec
Start 254: testcorenrn_vecplay::neuron
88/274 Test #254: testcorenrn_vecplay::neuron .............................................. Passed 0.50 sec
Start 255: testcorenrn_vecplay::coreneuron_cpu_online
89/274 Test #17: mpi_init::python_mpiexec_nrnmpi_init ..................................... Passed 0.79 sec
Start 18: mpi_init::python_mpiexec_mpienv
90/274 Test #255: testcorenrn_vecplay::coreneuron_cpu_online ............................... Passed 0.70 sec
Start 256: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
91/274 Test #18: mpi_init::python_mpiexec_mpienv .......................................... Passed 0.81 sec
Start 19: pytest::basic_tests_py3.10
92/274 Test #256: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate .............. Passed 0.76 sec
Start 257: testcorenrn_vecplay::coreneuron_cpu_offline
93/274 Test #257: testcorenrn_vecplay::coreneuron_cpu_offline .............................. Passed 0.45 sec
Start 266: testcorenrn_watch::neuron
94/274 Test #19: pytest::basic_tests_py3.10 ............................................... Passed 0.96 sec
Start 20: pytest_coreneuron::basic_tests_py3.10
95/274 Test #266: testcorenrn_watch::neuron ................................................ Passed 0.52 sec
Start 267: testcorenrn_watch::coreneuron_cpu_online
96/274 Test #267: testcorenrn_watch::coreneuron_cpu_online ................................. Passed 0.69 sec
Start 268: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
97/274 Test #268: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................ Passed 0.97 sec
Start 269: testcorenrn_watch::coreneuron_cpu_offline
98/274 Test #269: testcorenrn_watch::coreneuron_cpu_offline ................................ Passed 0.28 sec
Start 272: testcorenrn_netstimdirect::direct_netstimdirect
99/274 Test #272: testcorenrn_netstimdirect::direct_netstimdirect .......................... Passed 0.81 sec
Start 273: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
100/274 Test #273: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ......... Passed 0.90 sec
Start 21: datahandle::datahandle_tests
Start 22: coverage_tests::cover_tests
101/274 Test #21: datahandle::datahandle_tests ............................................. Passed 1.04 sec
Start 23: example_nmodl::ca_ap_hoc
102/274 Test #22: coverage_tests::cover_tests .............................................. Passed 1.19 sec
Start 24: example_nmodl::cabpump_hoc
103/274 Test #23: example_nmodl::ca_ap_hoc ................................................. Passed 0.50 sec
Start 25: example_nmodl::cachan_hoc
104/274 Test #24: example_nmodl::cabpump_hoc ............................................... Passed 0.43 sec
Start 26: example_nmodl::cadif_hoc
105/274 Test #25: example_nmodl::cachan_hoc ................................................ Passed 0.17 sec
Start 27: example_nmodl::cadifusl_hoc
106/274 Test #26: example_nmodl::cadif_hoc ................................................. Passed 0.19 sec
Start 28: example_nmodl::cadifusl1_hoc
107/274 Test #20: pytest_coreneuron::basic_tests_py3.10 .................................... Passed 5.99 sec
Start 29: example_nmodl::cadifusl2_hoc
108/274 Test #27: example_nmodl::cadifusl_hoc .............................................. Passed 0.19 sec
Start 30: example_nmodl::cagk_hoc
109/274 Test #29: example_nmodl::cadifusl2_hoc ............................................. Passed 0.16 sec
Start 31: example_nmodl::capmp_hoc
110/274 Test #30: example_nmodl::cagk_hoc .................................................. Passed 0.14 sec
Start 32: example_nmodl::cv_hoc
111/274 Test #28: example_nmodl::cadifusl1_hoc ............................................. Passed 0.25 sec
Start 33: example_nmodl::fh_hoc
112/274 Test #32: example_nmodl::cv_hoc .................................................... Passed 0.14 sec
Start 34: example_nmodl::fit1_hoc
113/274 Test #33: example_nmodl::fh_hoc .................................................... Passed 0.14 sec
Start 35: example_nmodl::gap_hoc
114/274 Test #31: example_nmodl::capmp_hoc ................................................. Passed 0.24 sec
Start 36: example_nmodl::hh1_hoc
115/274 Test #34: example_nmodl::fit1_hoc .................................................. Passed 0.14 sec
Start 37: example_nmodl::hhvect_hoc
116/274 Test #35: example_nmodl::gap_hoc ................................................... Passed 0.15 sec
Start 38: example_nmodl::nacum_hoc
117/274 Test #36: example_nmodl::hh1_hoc ................................................... Passed 0.14 sec
Start 39: example_nmodl::nadifl1_hoc
118/274 Test #37: example_nmodl::hhvect_hoc ................................................ Passed 0.15 sec
Start 40: example_nmodl::nadifl2_hoc
119/274 Test #38: example_nmodl::nacum_hoc ................................................. Passed 0.14 sec
Start 41: example_nmodl::nadifl3_hoc
120/274 Test #39: example_nmodl::nadifl1_hoc ............................................... Passed 0.16 sec
Start 42: example_nmodl::nadifl4_hoc
121/274 Test #40: example_nmodl::nadifl2_hoc ............................................... Passed 0.17 sec
Start 43: example_nmodl::obj_ex_hoc
122/274 Test #41: example_nmodl::nadifl3_hoc ............................................... Passed 0.17 sec
Start 44: example_nmodl::order_hoc
123/274 Test #42: example_nmodl::nadifl4_hoc ............................................... Passed 0.17 sec
Start 45: example_nmodl::passiv_hoc
124/274 Test #43: example_nmodl::obj_ex_hoc ................................................ Passed 0.14 sec
Start 46: example_nmodl::stim1_hoc
125/274 Test #44: example_nmodl::order_hoc ................................................. Passed 0.17 sec
Start 47: example_nmodl::syn1_hoc
126/274 Test #45: example_nmodl::passiv_hoc ................................................ Passed 0.14 sec
Start 48: example_nmodl::synpre_hoc
127/274 Test #46: example_nmodl::stim1_hoc ................................................. Passed 0.14 sec
Start 49: example_nmodl::tstextrn_hoc
128/274 Test #47: example_nmodl::syn1_hoc .................................................. Passed 0.14 sec
Start 50: example_nmodl::tstpnt1_hoc
129/274 Test #49: example_nmodl::tstextrn_hoc .............................................. Passed 0.14 sec
Start 51: example_nmodl::tstpnt2_hoc
130/274 Test #48: example_nmodl::synpre_hoc ................................................ Passed 0.20 sec
Start 52: example_nmodl::tstvec_hoc
131/274 Test #50: example_nmodl::tstpnt1_hoc ............................................... Passed 0.14 sec
Start 53: example_nmodl::cagkftab_py
132/274 Test #51: example_nmodl::tstpnt2_hoc ............................................... Passed 0.14 sec
Start 54: example_nmodl::expsynspine_py
133/274 Test #52: example_nmodl::tstvec_hoc ................................................ Passed 0.14 sec
Start 55: example_nmodl::nonlin_py
134/274 Test #54: example_nmodl::expsynspine_py ............................................ Passed 0.69 sec
Start 56: example_nmodl::tstpnt1_py
135/274 Test #56: example_nmodl::tstpnt1_py ................................................ Passed 0.52 sec
Start 57: example_nmodl::tstpnt2_py
136/274 Test #57: example_nmodl::tstpnt2_py ................................................ Passed 0.50 sec
Start 58: example_nmodl::vlag_py
137/274 Test #58: example_nmodl::vlag_py ................................................... Passed 0.57 sec
Start 59: hoctests::test_loadbal_hoc
138/274 Test #55: example_nmodl::nonlin_py ................................................. Passed 2.29 sec
Start 60: hoctests::perf1_hoc
139/274 Test #59: hoctests::test_loadbal_hoc ............................................... Passed 0.39 sec
Start 61: hoctests::test1_hoc
140/274 Test #61: hoctests::test1_hoc ...................................................... Passed 0.27 sec
Start 62: hoctests::test2_hoc
141/274 Test #62: hoctests::test2_hoc ...................................................... Passed 0.17 sec
Start 63: hoctests::test3_hoc
142/274 Test #63: hoctests::test3_hoc ...................................................... Passed 0.17 sec
Start 64: hoctests::test4_hoc
143/274 Test #64: hoctests::test4_hoc ...................................................... Passed 0.17 sec
Start 65: hoctests::test5_hoc
144/274 Test #60: hoctests::perf1_hoc ...................................................... Passed 1.23 sec
Start 66: hoctests::test6_hoc
145/274 Test #65: hoctests::test5_hoc ...................................................... Passed 0.13 sec
Start 67: hoctests::test7_hoc
146/274 Test #66: hoctests::test6_hoc ...................................................... Passed 0.13 sec
Start 68: hoctests::test8_hoc
147/274 Test #67: hoctests::test7_hoc ...................................................... Passed 0.13 sec
Start 69: hoctests::test9_hoc
148/274 Test #53: example_nmodl::cagkftab_py ............................................... Passed 3.84 sec
Start 70: hoctests::test_hocGUI2_py
149/274 Test #68: hoctests::test8_hoc ...................................................... Passed 0.14 sec
Start 71: hoctests::test_kschan_py
150/274 Test #69: hoctests::test9_hoc ...................................................... Passed 0.14 sec
Start 72: hoctests::test_mode_py
151/274 Test #72: hoctests::test_mode_py ................................................... Passed 0.72 sec
Start 73: hoctests::test_neurondemo_py
152/274 Test #70: hoctests::test_hocGUI2_py ................................................ Passed 0.81 sec
Start 74: hoctests::test_nrniv-launch_py
153/274 Test #71: hoctests::test_kschan_py ................................................. Passed 0.82 sec
Start 75: hoctests::test_shape_py
154/274 Test #74: hoctests::test_nrniv-launch_py ........................................... Passed 0.50 sec
Start 76: hoctests::test_thread_partition_py
155/274 Test #73: hoctests::test_neurondemo_py ............................................. Passed 0.66 sec
Start 77: hoctests::test1_py
156/274 Test #75: hoctests::test_shape_py .................................................. Passed 0.79 sec
Start 78: hoctests::test2_py
157/274 Test #78: hoctests::test2_py ....................................................... Passed 0.70 sec
Start 79: hoctests::test9_py
158/274 Test #77: hoctests::test1_py ....................................................... Passed 0.89 sec
Start 85: coreneuron_standalone::test_nrn_corenrn_standalone
159/274 Test #76: hoctests::test_thread_partition_py ....................................... Passed 1.07 sec
Start 86: nmodl_tests::test_table
160/274 Test #79: hoctests::test9_py ....................................................... Passed 0.78 sec
Start 87: nmodl_tests::test_disc
161/274 Test #86: nmodl_tests::test_table .................................................. Passed 0.96 sec
Start 88: nmodl_tests::test_function_table
162/274 Test #85: coreneuron_standalone::test_nrn_corenrn_standalone ....................... Passed 1.01 sec
Start 89: nmodl_tests::test_kinetic
163/274 Test #87: nmodl_tests::test_disc ................................................... Passed 1.02 sec
Start 90: coreneuron_modtests::version_macros
164/274 Test #88: nmodl_tests::test_function_table ......................................... Passed 0.98 sec
Start 92: coreneuron_modtests::fornetcon_py_cpu
165/274 Test #89: nmodl_tests::test_kinetic ................................................ Passed 0.96 sec
Start 93: coreneuron_modtests::direct_py_cpu
166/274 Test #90: coreneuron_modtests::version_macros ...................................... Passed 1.12 sec
Start 94: coreneuron_modtests::direct_hoc_cpu
167/274 Test #93: coreneuron_modtests::direct_py_cpu ....................................... Passed 0.99 sec
Start 95: coreneuron_modtests::spikes_py_cpu
168/274 Test #92: coreneuron_modtests::fornetcon_py_cpu .................................... Passed 1.00 sec
Start 96: coreneuron_modtests::spikes_file_mode_py_cpu
169/274 Test #94: coreneuron_modtests::direct_hoc_cpu ...................................... Passed 0.81 sec
Start 97: coreneuron_modtests::fast_imem_py_cpu
170/274 Test #96: coreneuron_modtests::spikes_file_mode_py_cpu ............................. Passed 0.98 sec
Start 98: coreneuron_modtests::datareturn_py_cpu
171/274 Test #95: coreneuron_modtests::spikes_py_cpu ....................................... Passed 1.02 sec
Start 99: coreneuron_modtests::test_units_py_cpu
172/274 Test #99: coreneuron_modtests::test_units_py_cpu ................................... Passed 0.97 sec
Start 100: coreneuron_modtests::test_netmove_py_cpu
173/274 Test #97: coreneuron_modtests::fast_imem_py_cpu .................................... Passed 1.28 sec
Start 101: coreneuron_modtests::test_pointer_py_cpu
174/274 Test #98: coreneuron_modtests::datareturn_py_cpu ................................... Passed 1.52 sec
Start 102: coreneuron_modtests::test_watchrange_py_cpu
175/274 Test #102: coreneuron_modtests::test_watchrange_py_cpu .............................. Passed 0.75 sec
Start 103: coreneuron_modtests::test_psolve_py_cpu
176/274 Test #100: coreneuron_modtests::test_netmove_py_cpu ................................. Passed 1.37 sec
Start 104: coreneuron_modtests::test_ba_py_cpu
177/274 Test #104: coreneuron_modtests::test_ba_py_cpu ...................................... Passed 0.79 sec
Start 105: coreneuron_modtests::test_natrans_py_cpu
178/274 Test #103: coreneuron_modtests::test_psolve_py_cpu .................................. Passed 0.92 sec
Start 108: nmodl_tests_coreneuron::test_table_coreneuron_cpu
179/274 Test #105: coreneuron_modtests::test_natrans_py_cpu ................................. Passed 0.81 sec
Start 109: nmodl_tests_coreneuron::test_disc_coreneuron_cpu
180/274 Test #108: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................ Passed 0.78 sec
Start 110: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu
181/274 Test #101: coreneuron_modtests::test_pointer_py_cpu ................................. Passed 3.38 sec
Start 111: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu
182/274 Test #110: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ............... Passed 0.76 sec
Start 112: modlunit_unitstest
183/274 Test #109: nmodl_tests_coreneuron::test_disc_coreneuron_cpu ......................... Passed 0.76 sec
Start 113: modlunit_hh
184/274 Test #112: modlunit_unitstest ....................................................... Passed 0.24 sec
Start 114: modlunit_stim
185/274 Test #113: modlunit_hh .............................................................. Passed 0.24 sec
Start 115: modlunit_pattern
186/274 Test #114: modlunit_stim ............................................................ Passed 0.10 sec
Start 116: pyinit::nrniv_script.py
187/274 Test #115: modlunit_pattern ......................................................... Passed 0.10 sec
Start 117: pyinit::nrniv_script.py_error
188/274 Test #111: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ...................... Passed 0.74 sec
Start 118: pyinit::nrniv_two_scripts.py
189/274 Test #117: pyinit::nrniv_script.py_error ............................................ Passed 0.13 sec
Start 119: pyinit::nrniv_two_scripts.py_error_check_code
190/274 Test #116: pyinit::nrniv_script.py .................................................. Passed 0.14 sec
Start 120: pyinit::nrniv_two_scripts.py_error_check_output
191/274 Test #118: pyinit::nrniv_two_scripts.py ............................................. Passed 0.14 sec
Start 121: pyinit::nrniv_python_command
192/274 Test #119: pyinit::nrniv_two_scripts.py_error_check_code ............................ Passed 0.13 sec
Start 122: pyinit::nrniv_python_command_error
193/274 Test #120: pyinit::nrniv_two_scripts.py_error_check_output .......................... Passed 0.12 sec
Start 123: pyinit::nrniv_python_script.py
194/274 Test #121: pyinit::nrniv_python_command ............................................. Passed 0.14 sec
Start 124: pyinit::nrniv_python_script.py_error
195/274 Test #122: pyinit::nrniv_python_command_error ....................................... Passed 0.13 sec
Start 125: pyinit::nrniv_python_command_twice
196/274 Test #123: pyinit::nrniv_python_script.py ........................................... Passed 0.13 sec
Start 126: pyinit::nrniv_python_script.py_twice
197/274 Test #124: pyinit::nrniv_python_script.py_error ..................................... Passed 0.13 sec
Start 127: pyinit::nrniv_python_command_args
198/274 Test #125: pyinit::nrniv_python_command_twice ....................................... Passed 0.13 sec
Start 128: pyinit::nrniv_python_script.py_args
199/274 Test #126: pyinit::nrniv_python_script.py_twice ..................................... Passed 0.13 sec
Start 129: pyinit::nrniv_nopython_PythonObject
200/274 Test #129: pyinit::nrniv_nopython_PythonObject ...................................... Passed 0.11 sec
Start 130: pyinit::nrniv_nopython_PythonObject_pyexe
201/274 Test #127: pyinit::nrniv_python_command_args ........................................ Passed 0.13 sec
Start 131: pyinit::nrniv_nopython_PythonObject_pyenv
202/274 Test #128: pyinit::nrniv_python_script.py_args ...................................... Passed 0.13 sec
Start 132: pyinit::nrniv_py3.10_python_command_version_check
203/274 Test #130: pyinit::nrniv_nopython_PythonObject_pyexe ................................ Passed 0.12 sec
Start 133: pyinit::nrniv_py3.10_python_check_sys_path
204/274 Test #131: pyinit::nrniv_nopython_PythonObject_pyenv ................................ Passed 0.11 sec
Start 135: pyinit::nrniv_py3.10_nrnpython_check_sys_path
205/274 Test #132: pyinit::nrniv_py3.10_python_command_version_check ........................ Passed 0.13 sec
Start 137: pyinit::nrniv_py3.10_python_check_sys_prefix
206/274 Test #133: pyinit::nrniv_py3.10_python_check_sys_path ............................... Passed 0.14 sec
Start 139: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix
207/274 Test #135: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................ Passed 0.14 sec
Start 141: pyinit::nrniv_py3.10_python_check_sys_exec_prefix
208/274 Test #137: pyinit::nrniv_py3.10_python_check_sys_prefix ............................. Passed 0.13 sec
Start 143: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix
209/274 Test #139: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix .......................... Passed 0.14 sec
Start 145: pyinit::nrniv_py3.10_python_check_sys_base_prefix
210/274 Test #141: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................ Passed 0.14 sec
Start 147: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix
211/274 Test #143: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix ..................... Passed 0.13 sec
Start 149: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix
212/274 Test #147: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix ..................... Passed 0.14 sec
Start 151: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix
213/274 Test #145: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................ Passed 0.14 sec
Start 153: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding
214/274 Test #149: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ................... Passed 0.13 sec
Start 155: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding
215/274 Test #151: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................ Passed 0.14 sec
Start 157: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding
216/274 Test #153: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding .................... Passed 0.14 sec
Start 159: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding
217/274 Test #155: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding ................. Passed 0.13 sec
Start 161: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding
218/274 Test #159: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding .................. Passed 0.13 sec
Start 163: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding
219/274 Test #157: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding ..................... Passed 0.14 sec
Start 165: pyinit::nrniv_py3.10_python_command_import_neuron
220/274 Test #161: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding .................... Passed 0.13 sec
Start 166: pyinit::py3.10_command_import_neuron
221/274 Test #163: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding ................. Passed 0.14 sec
Start 167: pyinit::nrniv_py3.10_hoc_command_nrnpython
222/274 Test #167: pyinit::nrniv_py3.10_hoc_command_nrnpython ............................... Passed 0.38 sec
Start 168: pyinit::nrniv_pydef_python_command_version_check
223/274 Test #166: pyinit::py3.10_command_import_neuron ..................................... Passed 0.51 sec
Start 169: pyinit::nrniv_pydef_python_check_sys_path
224/274 Test #165: pyinit::nrniv_py3.10_python_command_import_neuron ........................ Passed 0.59 sec
Start 171: pyinit::nrniv_pydef_nrnpython_check_sys_path
225/274 Test #168: pyinit::nrniv_pydef_python_command_version_check ......................... Passed 0.14 sec
Start 173: pyinit::nrniv_pydef_python_check_sys_prefix
226/274 Test #169: pyinit::nrniv_pydef_python_check_sys_path ................................ Passed 0.15 sec
Start 175: pyinit::nrniv_pydef_nrnpython_check_sys_prefix
227/274 Test #171: pyinit::nrniv_pydef_nrnpython_check_sys_path ............................. Passed 0.14 sec
Start 177: pyinit::nrniv_pydef_python_check_sys_exec_prefix
228/274 Test #173: pyinit::nrniv_pydef_python_check_sys_prefix .............................. Passed 0.14 sec
Start 179: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix
229/274 Test #175: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ........................... Passed 0.14 sec
Start 181: pyinit::nrniv_pydef_python_check_sys_base_prefix
230/274 Test #177: pyinit::nrniv_pydef_python_check_sys_exec_prefix ......................... Passed 0.13 sec
Start 183: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix
231/274 Test #179: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ...................... Passed 0.14 sec
Start 185: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix
232/274 Test #181: pyinit::nrniv_pydef_python_check_sys_base_prefix ......................... Passed 0.14 sec
Start 187: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix
233/274 Test #183: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ...................... Passed 0.13 sec
Start 189: pyinit::nrniv_pydef_python_check_sys_stderr.encoding
234/274 Test #185: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix .................... Passed 0.13 sec
Start 191: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding
235/274 Test #187: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix ................. Passed 0.13 sec
Start 193: pyinit::nrniv_pydef_python_check_sys_stdin.encoding
236/274 Test #189: pyinit::nrniv_pydef_python_check_sys_stderr.encoding ..................... Passed 0.13 sec
Start 195: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding
237/274 Test #191: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding .................. Passed 0.13 sec
Start 197: pyinit::nrniv_pydef_python_check_sys_stdout.encoding
238/274 Test #193: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ...................... Passed 0.13 sec
Start 199: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding
239/274 Test #195: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ................... Passed 0.14 sec
Start 201: pyinit::nrniv_pydef_python_command_import_neuron
240/274 Test #197: pyinit::nrniv_pydef_python_check_sys_stdout.encoding ..................... Passed 0.13 sec
Start 202: pyinit::pydef_command_import_neuron
241/274 Test #199: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding .................. Passed 0.13 sec
Start 203: pyinit::nrniv_pydef_hoc_command_nrnpython
242/274 Test #203: pyinit::nrniv_pydef_hoc_command_nrnpython ................................ Passed 0.19 sec
Start 204: external_nrntest
243/274 Test #201: pyinit::nrniv_pydef_python_command_import_neuron ......................... Passed 0.69 sec
Start 224: testcorenrn_bbcore::compare_results
244/274 Test #202: pyinit::pydef_command_import_neuron ...................................... Passed 0.65 sec
Start 230: testcorenrn_conc::compare_results
245/274 Test #230: testcorenrn_conc::compare_results ........................................ Passed 0.12 sec
Start 236: testcorenrn_deriv::compare_results
246/274 Test #224: testcorenrn_bbcore::compare_results ...................................... Passed 0.15 sec
Start 242: testcorenrn_gf::compare_results
247/274 Test #236: testcorenrn_deriv::compare_results ....................................... Passed 0.02 sec
Start 248: testcorenrn_kin::compare_results
248/274 Test #242: testcorenrn_gf::compare_results .......................................... Passed 0.02 sec
Start 253: testcorenrn_patstim::compare_results
249/274 Test #248: testcorenrn_kin::compare_results ......................................... Passed 0.02 sec
Start 259: testcorenrn_vecplay::compare_results
250/274 Test #253: testcorenrn_patstim::compare_results ..................................... Passed 0.02 sec
Start 271: testcorenrn_watch::compare_results
251/274 Test #259: testcorenrn_vecplay::compare_results ..................................... Passed 0.02 sec
Start 274: testcorenrn_netstimdirect::compare_results
252/274 Test #271: testcorenrn_watch::compare_results ....................................... Passed 0.02 sec
253/274 Test #274: testcorenrn_netstimdirect::compare_results ............................... Passed 0.02 sec
Start 81: parallel::partrans
254/274 Test #81: parallel::partrans ....................................................... Passed 0.93 sec
Start 82: parallel::netpar
255/274 Test #82: parallel::netpar ......................................................... Passed 0.86 sec
Start 83: parallel::bas
256/274 Test #83: parallel::bas ............................................................ Passed 3.66 sec
Start 84: parallel::nrntest_fast
257/274 Test #84: parallel::nrntest_fast ................................................... Passed 1.23 sec
Start 91: coreneuron_modtests::inputpresyn_py
258/274 Test #91: coreneuron_modtests::inputpresyn_py ...................................... Passed 0.89 sec
Start 106: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
259/274 Test #106: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ......................... Passed 1.02 sec
260/274 Test #204: external_nrntest ......................................................... Passed 38.58 sec
Start 264: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
261/274 Test #264: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................ Passed 0.33 sec
Start 205: reduced_dentate::neuron
262/274 Test #205: reduced_dentate::neuron .................................................. Passed 24.74 sec
Start 206: reduced_dentate::coreneuron_cpu
263/274 Test #206: reduced_dentate::coreneuron_cpu .......................................... Passed 17.60 sec
Start 216: external_ringtest::coreneuron_cpu_mpi_threads
264/274 Test #216: external_ringtest::coreneuron_cpu_mpi_threads ............................ Passed 1.02 sec
Start 217: external_ringtest::coreneuron_cpu_mpi_threads_python
265/274 Test #217: external_ringtest::coreneuron_cpu_mpi_threads_python ..................... Passed 1.21 sec
Start 260: testcorenrn_vecevent::neuron
266/274 Test #260: testcorenrn_vecevent::neuron ............................................. Passed 0.33 sec
Start 261: testcorenrn_vecevent::coreneuron_cpu_online
267/274 Test #261: testcorenrn_vecevent::coreneuron_cpu_online .............................. Passed 0.67 sec
Start 262: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
268/274 Test #262: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ............. Passed 0.69 sec
Start 263: testcorenrn_vecevent::coreneuron_cpu_offline
269/274 Test #263: testcorenrn_vecevent::coreneuron_cpu_offline ............................. Passed 0.29 sec
Start 80: parallel::subworld
270/274 Test #80: parallel::subworld ....................................................... Passed 1.21 sec
Start 107: coreneuron_modtests::test_subworlds_py_cpu
271/274 Test #107: coreneuron_modtests::test_subworlds_py_cpu ............................... Passed 1.83 sec
Start 207: reduced_dentate::compare_results
Start 218: external_ringtest::compare_results
Start 265: testcorenrn_vecevent::compare_results
272/274 Test #207: reduced_dentate::compare_results ......................................... Passed 0.02 sec
273/274 Test #265: testcorenrn_vecevent::compare_results .................................... Passed 0.02 sec
274/274 Test #218: external_ringtest::compare_results ....................................... Passed 0.02 sec
100% tests passed, 0 tests failed out of 274
Total Test time (real) = 135.99 sec
$ cmake --build . --target install
[0/2] Re-checking globbed directories...
[1/5] Update hh.mod for CoreNEURON compatibility
[2/5] Generating help_data.dat
[3/5] cd /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[4/5] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:162: UserWarning: "/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn" is shallow and may cause errors
warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:running build_scripts
[4/5] Install the project...
-- Install configuration: "Custom"
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libsymtab.a
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/librxdmath.dylib
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libnrniv.dylib
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libnrngnu.a
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libvisitor.a
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/hclass3.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/hoc.cpython-310-darwin.so
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/expect_hocerr.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/psection.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/metadata.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/morphml.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/xml2nrn.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/neuroml.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/rdxml.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/biophysics.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/config.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/units.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/sections.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdException.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/options.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/plugins.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdsection.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/species.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdmath.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/rate.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/region.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/multiCompartmentReaction.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/constants.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/dimension3.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/section1d.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/export.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/initializer.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/rangevar.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/geometry.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxd.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/generalizedReaction.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/nodelist.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/node.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/gui.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/reaction.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/_subclass.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/test_all.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/strtobool.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/capture_stdout.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/checkresult.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/test_neuron.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/test_vector.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/test_rxd.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/_config_params.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/coreneuron.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/doc.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2/setup_threejs.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2/config.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2/rangevar.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2/plotshape.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2/utilities.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/crxd
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/crxd/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/help_data.dat
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/nonvint_block_supervisor.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nrnunits.lib.in
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libspdlog.a
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libfmt.a
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/dsl.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/symtab.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext/example
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext/example/passive.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext/example/expsyn.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext/example/exp2syn.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext/example/hh.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext/viz
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext/viz/index.html
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext/viz/css
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext/viz/css/tree.css
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js/d3.min.js
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js/tree.js
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/visitor.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ast.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/ode.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/nmodl/_nmodl.cpython-310-darwin.so
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libpywrapper.a
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/liblexer.a
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libsparse13.a
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libpyembed.a
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libcoreneuron-core.a
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libcodegen.a
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libutil.a
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/crout_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/cache
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/cache/mechanism_range.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/container
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/container/non_owning_soa_identifier.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/container/data_handle.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/container/generic_data_handle.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/model_data_fwd.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnrandom.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hocassrt.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/multicore.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnconf.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/wrap_sprintf.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/simeq.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/ocmisc.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/multisplit.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/oc_ansi.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hoclist.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/membfunc.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnmpidec.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnversionmacros.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/scoplib.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/sparse.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/membdef.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton_struct.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton/newton.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrncvode
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrncvode/nrnneosm.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/bbsavestate.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nmodlmutex.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/euler_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hocdec.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/md2redef.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hocgetsym.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/euler.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/cabvars.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/options.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnmpi.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnran123.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/CholmodSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/StdVector
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/StdDeque
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Core
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SparseLU
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/OrderingMethods
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/QtAlignedMalloc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Householder
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/PardisoSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SparseCore
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Jacobi
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Dense
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SPQRSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/QR
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Eigen
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SparseQR
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SVD
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Cholesky
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/UmfPackSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/IterativeLinearSolvers
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/LU
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Sparse
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Geometry
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SuperLUSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/StdList
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/MetisSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SparseCholesky
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Eigenvalues
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/PaStiXSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport/CholmodSupport.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/blas.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/Kernel.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/RealSvd2x2.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/Image.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/lapack.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke_mangling.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Reverse.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ConditionEstimator.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/PermutationMatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/MathFunctionsImpl.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryOp.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DiagonalMatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/StlIterators.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorBlock.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ReturnByValue.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Solve.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointRank2Update.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/Parallelizer.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointProduct.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverVector.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ArithmeticSequence.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Product.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/NonMPL2.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ReshapedHelper.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/BlasUtil.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/StaticAssert.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Constants.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/XprHelper.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/MKL_support.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Macros.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/DisableStupidWarnings.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/SymbolicIndex.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ForwardDeclarations.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Memory.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Meta.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ConfigureVectorization.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/IntegralConstant.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ReenableStupidWarnings.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/IndexedViewHelper.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/MatrixBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Stride.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Map.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ForceAlignedAccess.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/MathFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/UnaryFunctors.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/TernaryFunctors.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/AssignmentFunctors.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/BinaryFunctors.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/StlFunctors.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/NullaryFunctors.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfCwiseBinaryOp.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/BandMatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Inverse.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign_MKL.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Swap.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ProductEvaluators.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/MapBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Matrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/EigenBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/StableNorm.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/GenericPacketMath.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseBinaryOp.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Visitor.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseStorage.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DiagonalProduct.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryView.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/NoAlias.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseCoeffsBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/PartialReduxEvaluator.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/IndexedView.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Fuzzy.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/TriangularMatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/IO.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/PacketMath.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/MathFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/TypeCasting.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/Complex.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/PacketMath.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/MathFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/TypeCasting.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/PacketMath.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/MathFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/Complex.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/CUDA
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/CUDA/Complex.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/PacketMath.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/MathFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/Complex.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/Half.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/Settings.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/TypeCasting.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/BFloat16.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/ConjHelper.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/PacketMath.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/MathFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/TypeCasting.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/Complex.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/PacketMath.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/MathFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/TypeCasting.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc/math_constants.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/PacketMath.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/MathFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/TypeCasting.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/Complex.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/PacketMath.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/MathFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/InteropHeaders.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/TypeCasting.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/PacketMath.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/MathFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/TypeCasting.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/Complex.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/PacketMath.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MathFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProduct.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/Complex.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Array.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/SolverBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/AssignEvaluator.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Replicate.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CoreIterators.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Block.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Dot.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/PlainObjectBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfAdjointView.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/GeneralProduct.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/SolveTriangular.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CoreEvaluators.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseNullaryOp.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorwiseOp.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayWrapper.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/BooleanRedux.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Transpositions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/NestByValue.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Ref.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Reshaped.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Transpose.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Redux.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/NumTraits.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CommaInitializer.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/GlobalFunctions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Random.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Diagonal.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseTernaryOp.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Select.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Utils.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_kernel_bmod.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_bmod.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_gemm_kernel.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_dfs.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_dfs.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_relax_snode.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Structs.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pruneL.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Memory.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pivotL.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLUImpl.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Ordering.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Eigen_Colamd.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Amd.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseUnaryOps.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/BlockMethods.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/IndexedViewMethods.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseBinaryOps.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/ReshapedMethods.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Householder
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Householder/HouseholderSequence.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Householder/Householder.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Householder/BlockHouseholder.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport/PardisoSupport.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSelfAdjointView.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/CompressedStorage.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseView.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseColEtree.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrixBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDiagonalProduct.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTriangularView.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseAssign.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparsePermutation.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMap.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDenseProduct.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRef.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseFuzzy.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/MappedSparseMatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSolverBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseBlock.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/TriangularSolver.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseVector.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCompressedBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseProduct.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRedux.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDot.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Jacobi
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Jacobi/Jacobi.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR_LAPACKE.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseQR
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Cholesky
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/arch
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/KLUSupport
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnapi.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrncvode.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnsemanticversion.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/spmatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/ocfunc.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/section_fwd.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/row_view.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hoc_membf.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/backtrace_utils.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnisaac.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/parse_with_deps.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnredef.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/cspredef.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/dimplic.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hoc.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/crout.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnmpiuse.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/md1redef.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrniv_mf.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrn_ansi.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/deflate.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/errcodes.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/lib
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/config
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/config/config.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/file_utils.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/profile
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/randoms
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrnoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/apps
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/permute
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnassrt.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/spconfig.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/runge.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnoc_ml.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/mech_api.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/mcran4.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/ssimplic_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hocparse.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/ssimplic.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/open64features.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/sse.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/threefry.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/conventional
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/philox.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/gsl_microrng.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/aes.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/array.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/u01fixedpt.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/boxmuller.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/uniform.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/ars.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/crout
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/crout/crout.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/sparse_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/treeset.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/cspmatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/nmodl
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nmodl.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nmodl/nrnunits.lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nmodl/nrnunits.lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libcoreneuron-core.a
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/file_utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include//coreneuron/permute/data_layout.hpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/coreneuron/mod_func.c.pl
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/coreneuron/enginemech.cpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/nmodl
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/nrniv-core
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/coreneuron/coreneuron.cpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libcorenrnmech_internal.dylib
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/cache
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/cache/mechanism_range.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/container
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/container/non_owning_soa_identifier.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/container/data_handle.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/container/generic_data_handle.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/model_data_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnrandom.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hocassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/multicore.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/wrap_sprintf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/simeq.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/ocmisc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/multisplit.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/oc_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hoclist.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/membfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnversionmacros.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/scoplib.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/sparse.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/membdef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrncvode
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrncvode/nrnneosm.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/bbsavestate.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nmodlmutex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/euler_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hocdec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hocgetsym.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/euler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/options.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/CholmodSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/StdVector
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/StdDeque
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Core
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/QtAlignedMalloc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Dense
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/QR
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Eigen
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SVD
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/LU
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Sparse
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/StdList
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport/CholmodSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/blas.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/Kernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/RealSvd2x2.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/Image.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/lapack.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke_mangling.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Reverse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ConditionEstimator.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/PermutationMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/MathFunctionsImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DiagonalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/StlIterators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ReturnByValue.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Solve.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointRank2Update.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/Parallelizer.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ArithmeticSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Product.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/NonMPL2.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ReshapedHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/BlasUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/StaticAssert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Constants.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/XprHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/MKL_support.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Macros.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/DisableStupidWarnings.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/SymbolicIndex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ForwardDeclarations.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Meta.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ConfigureVectorization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/IntegralConstant.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ReenableStupidWarnings.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/IndexedViewHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/MatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Stride.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Map.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ForceAlignedAccess.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/UnaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/TernaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/AssignmentFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/BinaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/StlFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/NullaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/BandMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Inverse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign_MKL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Swap.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ProductEvaluators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/MapBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Matrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/EigenBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/StableNorm.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/GenericPacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Visitor.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/NoAlias.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseCoeffsBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/PartialReduxEvaluator.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/IndexedView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Fuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/TriangularMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/IO.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/CUDA
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/CUDA/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/Half.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/Settings.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/BFloat16.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/ConjHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc/math_constants.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/InteropHeaders.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Array.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/SolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/AssignEvaluator.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Replicate.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CoreIterators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Block.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Dot.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/PlainObjectBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/GeneralProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/SolveTriangular.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CoreEvaluators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseNullaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorwiseOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayWrapper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/BooleanRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Transpositions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/NestByValue.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Ref.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Reshaped.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Transpose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Redux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/NumTraits.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CommaInitializer.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/GlobalFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Random.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Diagonal.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseTernaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Select.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_kernel_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_gemm_kernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Structs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pruneL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pivotL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLUImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Ordering.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Eigen_Colamd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Amd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/BlockMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/IndexedViewMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/ReshapedMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Householder/HouseholderSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Householder/Householder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Householder/BlockHouseholder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport/PardisoSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/CompressedStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseColEtree.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTriangularView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseAssign.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparsePermutation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMap.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDenseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseFuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/MappedSparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/TriangularSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCompressedBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDot.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Jacobi/Jacobi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnapi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrncvode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnsemanticversion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/spmatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/ocfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/section_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/row_view.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hoc_membf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/backtrace_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnisaac.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/parse_with_deps.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/cspredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/dimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrniv_mf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrn_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/deflate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/errcodes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/file_utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/spconfig.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/runge.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnoc_ml.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/mech_api.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/mcran4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hocparse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/ssimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/open64features.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/sse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/threefry.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/conventional
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/philox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/gsl_microrng.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/aes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/array.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/u01fixedpt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/boxmuller.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/uniform.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/ars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/crout
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/crout/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/treeset.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/cspmatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/modfile
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/modfile/stim.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/modfile/passive.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/modfile/expsyn.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/modfile/svclmp.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/modfile/exp2syn.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/modfile/netstim.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/modfile/hh.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/modfile/pattern.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/coreneuron/nrnivmodl_core_makefile
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/nrnivmodl-core
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/nrniv
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/nocmodl
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/modlunit
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/libnrniv.dylib
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/nrnmain.cpp
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/nrngui
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/neurondemo
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/nrnivmodl
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/nrnmech_makefile
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/sortspike
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/mkthreadsafe
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/nrnpyenv.sh
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/bin/set_nrnpyenv.sh
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/librxdmath.dylib
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/hclass3.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/hoc.cpython-310-darwin.so
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/expect_hocerr.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/psection.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/metadata.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/morphml.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/xml2nrn.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/__init__.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/neuroml.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/rdxml.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/neuroml/biophysics.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/config.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/units.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/sections.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdException.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/options.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/plugins.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdsection.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/species.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdmath.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/rate.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/region.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/multiCompartmentReaction.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/constants.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/dimension3.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/section1d.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/plugins.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/rxdsection.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/multiCompartmentReaction.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/rangevar.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/rxdmath.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/reaction.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/rate.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/generalizedReaction.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/initializer.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/species.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/region.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/nodelist.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/rxdException.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/options.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/node.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/constants.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/rxd.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/geometry.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/dimension3.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/__pycache__/__init__.cpython-310.pyc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/section1d.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/export.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/initializer.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/rangevar.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/geometry.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxd.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/generalizedReaction.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/nodelist.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/node.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/gui.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/rxd/reaction.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/_subclass.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/test_all.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/__init__.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/__pycache__
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/__pycache__/capture_stdout.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/__pycache__/strtobool.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/__pycache__/checkresult.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/__pycache__/__init__.cpython-310.pyc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/strtobool.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/capture_stdout.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/checkresult.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/__pycache__
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/__pycache__/test_neuron.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/__pycache__/test_rxd.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/__pycache__/test_vector.cpython-310-pytest-7.4.2.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/__pycache__/test_vector.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/__pycache__/test_rxd.cpython-310-pytest-7.4.2.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/__pycache__/test_all.cpython-310-pytest-7.4.2.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/__pycache__/test_neuron.cpython-310-pytest-7.4.2.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/__pycache__/test_all.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/__pycache__/__init__.cpython-310.pyc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/test_neuron.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/test_vector.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/tests/test_rxd.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__init__.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/_config_params.py
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__pycache__
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__pycache__/gui.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__pycache__/coreneuron.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__pycache__/config.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__pycache__/hclass3.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__pycache__/units.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__pycache__/nonvint_block_supervisor.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__pycache__/psection.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__pycache__/expect_hocerr.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__pycache__/_config_params.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__pycache__/doc.cpython-310.pyc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/__pycache__/__init__.cpython-310.pyc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/coreneuron.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/doc.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2/setup_threejs.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2/config.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2/__init__.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2/rangevar.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2/plotshape.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui2/utilities.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/crxd
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/crxd/__init__.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/help_data.dat
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/gui.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/nonvint_block_supervisor.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/lib/python/neuron/help_data.dat
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/shape.cm2
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/helpdict
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/stdgui.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/loadbal.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/family.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/thresh.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/attshape.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/corenrn.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/gatherv.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/shapebox.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/lincir
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/lincir/lincir1.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/lincir/elmbase.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/lincir/linmech.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/lincir/lingraph.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/lincir.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/grapher.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/vplay.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mknrndll.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/inserter.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/impedanx.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/impratio.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/runfit.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/showmech.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/movierun.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/parcom.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/noload.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/vecwrap.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/prcellstate.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/nrngui.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/funfit.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/wingroup.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/electrod.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/gategui.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/properties.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/chanbild1.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/kschanbg.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/const.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/ksgate.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/ksstate.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/kstgui.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/sigmoid.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/kstrans.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/table.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/exp.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/linoid.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/inhomofn.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/celmemb.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/celgeom.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/celbild1.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/celset.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/celtopol.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/celmang.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/psubset.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mkcurve.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/single.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/pointgrp.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/subiter.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/single1.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/atoltool.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/nrngui1.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/impedanc.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/modlunit.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/artcel.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/netgui.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/netdata.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/grstrlst.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/netready.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/spkplot.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/syntypes.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/edgegui.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/varmeth1.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/secanal.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/ppanal.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/artview.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/ncview.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/rcclasses.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/realcell.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/mviewgui.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/parmsets.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/mviewxml.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/allpp.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/distinct.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/parmvals.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/distinctparm.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/allcell.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/treeview.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/mview1.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/logax.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/pcchdir.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/stdrun.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/fitparm.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/mulfit1.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/eonefunc.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/eonerun.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/clampfit.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/optwrap.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/protorun.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/e_actpot.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/e_y.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/eparmlst.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/e_norm.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/e_xy.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/eoneprim.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/macload.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/netparmpi.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/pointbsr.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/binfo.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/stdlib.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/read_nts.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/import3d_sec.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/read_morphml.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/read_nlcda3.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/read_nlcda.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/import3d_gui.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/read_swc.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/pointman.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/nrnunits.lib.in
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/prologue.id
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/nrn.defaults.in
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/cleanup
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/shape.cm1
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/auditscripts
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/auditscripts/saveaudit
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/auditscripts/retrieve.sh
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/auditscripts/hocaudit.sh
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/auditscripts/gettarname
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/auditscripts/notes
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/hocload.sh
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/hh.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/singhh.ses
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/singhhchan.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/nomodel.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/dynchan.ses
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/pyramid.nrn
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/dynclamp.ses
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/demo.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release/nacaex.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release/nachan.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release/release.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release/camchan.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release/capump.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release/cachan1.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release/invlfire.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release/khhchan.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release/cabpump.mod
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release.ses
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/pyramid.ses
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/cycle.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/d3init.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/dend3.ses
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/demo.ses
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/dend3
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/dend3/control.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/dend3/syn3.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/dend3/dend3.nrn
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/sync
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/sync/init.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/sync/start.ses
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/sync/demosync.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/sync/spkplot.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/sync/cell.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/sync/synchronize.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/dynclamp.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/singhh.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/hh.ses
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/reconst.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/testca.hoc
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/nrnunits.lib
-- Installing: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/nrn.defaults
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/lib/cleanup
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/cache
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/cache/mechanism_range.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/container
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/container/non_owning_soa_identifier.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/container/data_handle.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/container/generic_data_handle.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron/model_data_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnrandom.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hocassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/multicore.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/wrap_sprintf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/simeq.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/ocmisc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/multisplit.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/oc_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hoclist.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/membfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnversionmacros.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/scoplib.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/sparse.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/membdef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/neuron.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrncvode
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrncvode/nrnneosm.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/bbsavestate.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nmodlmutex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/euler_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hocdec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hocgetsym.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/euler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/options.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/CholmodSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/StdVector
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/StdDeque
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Core
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/QtAlignedMalloc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Dense
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/QR
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Eigen
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SVD
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/LU
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Sparse
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/StdList
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport/CholmodSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/blas.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/Kernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/RealSvd2x2.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/Image.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/lapack.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke_mangling.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Reverse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ConditionEstimator.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/PermutationMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/MathFunctionsImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DiagonalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/StlIterators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ReturnByValue.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Solve.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointRank2Update.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/Parallelizer.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ArithmeticSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Product.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/NonMPL2.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ReshapedHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/BlasUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/StaticAssert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Constants.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/XprHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/MKL_support.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Macros.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/DisableStupidWarnings.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/SymbolicIndex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ForwardDeclarations.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Meta.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ConfigureVectorization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/IntegralConstant.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ReenableStupidWarnings.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/util/IndexedViewHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/MatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Stride.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Map.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ForceAlignedAccess.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/UnaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/TernaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/AssignmentFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/BinaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/StlFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/NullaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/BandMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Inverse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign_MKL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Swap.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ProductEvaluators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/MapBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Matrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/EigenBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/StableNorm.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/GenericPacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Visitor.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/NoAlias.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseCoeffsBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/PartialReduxEvaluator.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/IndexedView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Fuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/TriangularMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/IO.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/CUDA
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/CUDA/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/Half.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/Settings.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/BFloat16.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/ConjHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc/math_constants.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/InteropHeaders.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Array.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/SolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/AssignEvaluator.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Replicate.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CoreIterators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Block.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Dot.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/PlainObjectBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/GeneralProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/SolveTriangular.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CoreEvaluators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseNullaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorwiseOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayWrapper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/BooleanRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Transpositions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/NestByValue.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Ref.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Reshaped.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Transpose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Redux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/NumTraits.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CommaInitializer.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/GlobalFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Random.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Diagonal.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseTernaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Core/Select.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_kernel_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_gemm_kernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Structs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pruneL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pivotL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLUImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Ordering.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Eigen_Colamd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Amd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/BlockMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/IndexedViewMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/ReshapedMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Householder/HouseholderSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Householder/Householder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Householder/BlockHouseholder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport/PardisoSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/CompressedStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseColEtree.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTriangularView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseAssign.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparsePermutation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMap.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDenseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseFuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/MappedSparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/TriangularSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCompressedBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDot.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Jacobi/Jacobi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Eigen/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnapi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrncvode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnsemanticversion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/spmatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/ocfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/section_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/row_view.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hoc_membf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/backtrace_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnisaac.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/parse_with_deps.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/cspredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/dimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrniv_mf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrn_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/deflate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/errcodes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/file_utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/spconfig.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/runge.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/nrnoc_ml.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/mech_api.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/mcran4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/hocparse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/ssimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/open64features.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/sse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/threefry.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/conventional
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/philox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/gsl_microrng.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/aes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/array.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/u01fixedpt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/boxmuller.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/uniform.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/Random123/ars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/crout
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/crout/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/treeset.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/include/cspmatrix.h
.: replacing existing signature
.: replacing existing signature
.: replacing existing signature
.: replacing existing signature
.: replacing existing signature
"install" of folder "nrn" of folder "cellular" of folder "hpc" of folder "J937621" of folder "P157688" of folder "0" of folder "builds" of folder "gitlab-runner" of folder "Users"
35:57: execution error: Finder got an error: AppleEvent timed out. (-1712)
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P157688/J937621/hpc/cellular/nrn/install/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"
Creating 'arm64' directory for .o files.
MODOBJS= ./cabpump.o ./cachan
View raw

(Sorry about that, but we can’t show files that are this big right now.)

View raw

(Sorry about that, but we can’t show files that are this big right now.)

View raw

(Sorry about that, but we can’t show files that are this big right now.)

View raw

(Sorry about that, but we can’t show files that are this big right now.)

View raw

(Sorry about that, but we can’t show files that are this big right now.)

View raw

(Sorry about that, but we can’t show files that are this big right now.)

View raw

(Sorry about that, but we can’t show files that are this big right now.)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment