Created
July 3, 2024 14:57
-
-
Save bbpbuildbot/51c10393ad2eb5187f7bc73b578c1aa0 to your computer and use it in GitHub Desktop.
Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/220112 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2954.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1720018155:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720018155:resolve_secrets [0Ksection_start:1720018155:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3238657872, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 220112, build ref , job ID 1337524 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1337524_PROD_P2160_CP0_C0 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2285446 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1337524_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112 --ntasks=2 --jobid=2285446 --cpus-per-task=8 --mem=160G | |
| section_end:1720018156:prepare_executor [0Ksection_start:1720018156:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n21 via bbpv1.epfl.ch... | |
| section_end:1720018159:prepare_script [0Ksection_start:1720018159:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720018160:get_sources [0Ksection_start:1720018160:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=94965 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1720018166:restore_cache [0Ksection_start:1720018166:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1337523)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=95069 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1337523 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1720018167:download_artifacts [0Ksection_start:1720018167:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337524/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337524/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337524/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337524/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337524/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337524/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112/J1337524_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2285446/ccache | |
| Config file: /nvme/bbpcihpcproj12/2285446/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Wed Jul 3 16:49:32 2024 | |
| Local storage: | |
| Cache size (GB): 0.47 / 0.51 (91.11%) | |
| Files: 7336 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr | |
| Concretized | |
| -------------------------------- | |
| - hrofyme neuron@git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - fz3oxtc ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] ixoq64r ^nmodl@git.7beaee9751e233f775a177c819d727abde7e4495=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| ==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul [42/49] | |
| ==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul found: installing from source | |
| ==> No patches needed for libsonata-report | |
| ==> libsonata-report: Executing phase: 'cmake' | |
| ==> libsonata-report: Executing phase: 'build' | |
| ==> libsonata-report: Executing phase: 'install' | |
| ==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul | |
| Stage: 2.60s. Cmake: 5.05s. Build: 1.60s. Install: 0.11s. Post-install: 0.36s. Total: 9.90s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/software/install_gcc-12.3.0-skylake/nmodl-git.7beaee9751e233f775a177c819d727abde7e4495_develop-ixoq64 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| ==> Installing neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop-hrofymebgi4hfp3ravywr4qgb55bujbk [49/49] | |
| ==> No binary for neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop-hrofymebgi4hfp3ravywr4qgb55bujbk found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 2: | |
| 'make' '-j8' | |
| 8 errors found in build log: | |
| 2679 [ 34%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/mechanism/capac.cpp.o | |
| 2680 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-bu | |
| ild-hrofyme/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/oneapi/icpx | |
| -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DDISABLE_HOC_EXP -DDISABLE_T | |
| IMEOUT -DEIGEN_DONT_PARALLELIZE -DENABLE_SONATA_REPORTS -DENABLE_S | |
| PLAYTREE_QUEUING -DHAVE_MALLOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 | |
| -DMPI_NO_CPPBIND=1 -DNRNMPI=1 -DNRNMPI_DYNAMICLOAD=1 -DOMPI_SKIP_M | |
| PICXX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P22 | |
| 0112/software/install_oneapi-2023.2.0-skylake/libsonata-report-git | |
| .5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/include - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J133 | |
| 7524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3 | |
| bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ | |
| src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| /J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b | |
| 53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack | |
| -build-hrofyme/generated -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neur | |
| on-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi | |
| 4hfp3ravywr4qgb55bujbk/spack-src/external/CLI11/include -isystem / | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J13375 | |
| 24/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bd | |
| bad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ex | |
| ternal/Random123/include -march=skylake -mtune=skylake -fopenmp-si | |
| md -g -O1 -fp-model precise -std=c++17 -Wno-unknown-pragmas -MD - | |
| MT src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/capac.c | |
| pp.o -MF CMakeFiles/coreneuron-core.dir/mechanism/capac.cpp.o.d -o | |
| CMakeFiles/coreneuron-core.dir/mechanism/capac.cpp.o -c /gpfs/bbp | |
| .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337524/spack | |
| -build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bb | |
| ba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/src/corene | |
| uron/mechanism/capac.cpp | |
| 2681 [ 34%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/mechanism/eion.cpp.o | |
| 2682 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-bu | |
| ild-hrofyme/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/oneapi/icpx | |
| -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DDISABLE_HOC_EXP -DDISABLE_T | |
| IMEOUT -DEIGEN_DONT_PARALLELIZE -DENABLE_SONATA_REPORTS -DENABLE_S | |
| PLAYTREE_QUEUING -DHAVE_MALLOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 | |
| -DMPI_NO_CPPBIND=1 -DNRNMPI=1 -DNRNMPI_DYNAMICLOAD=1 -DOMPI_SKIP_M | |
| PICXX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P22 | |
| 0112/software/install_oneapi-2023.2.0-skylake/libsonata-report-git | |
| .5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/include - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J133 | |
| 7524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3 | |
| bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ | |
| src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| /J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b | |
| 53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack | |
| -build-hrofyme/generated -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neur | |
| on-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi | |
| 4hfp3ravywr4qgb55bujbk/spack-src/external/CLI11/include -isystem / | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J13375 | |
| 24/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bd | |
| bad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ex | |
| ternal/Random123/include -march=skylake -mtune=skylake -fopenmp-si | |
| md -g -O1 -fp-model precise -std=c++17 -Wno-unknown-pragmas -MD - | |
| MT src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/eion.cp | |
| p.o -MF CMakeFiles/coreneuron-core.dir/mechanism/eion.cpp.o.d -o C | |
| MakeFiles/coreneuron-core.dir/mechanism/eion.cpp.o -c /gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337524/spack-bu | |
| ild/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8 | |
| f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/src/coreneuro | |
| n/mechanism/eion.cpp | |
| 2683 [ 34%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/mechanism/mech_mapping.cpp.o | |
| 2684 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-bu | |
| ild-hrofyme/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/oneapi/icpx | |
| -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DDISABLE_HOC_EXP -DDISABLE_T | |
| IMEOUT -DEIGEN_DONT_PARALLELIZE -DENABLE_SONATA_REPORTS -DENABLE_S | |
| PLAYTREE_QUEUING -DHAVE_MALLOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 | |
| -DMPI_NO_CPPBIND=1 -DNRNMPI=1 -DNRNMPI_DYNAMICLOAD=1 -DOMPI_SKIP_M | |
| PICXX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P22 | |
| 0112/software/install_oneapi-2023.2.0-skylake/libsonata-report-git | |
| .5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/include - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J133 | |
| 7524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3 | |
| bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ | |
| src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| /J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b | |
| 53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack | |
| -build-hrofyme/generated -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neur | |
| on-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi | |
| 4hfp3ravywr4qgb55bujbk/spack-src/external/CLI11/include -isystem / | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J13375 | |
| 24/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bd | |
| bad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ex | |
| ternal/Random123/include -march=skylake -mtune=skylake -fopenmp-si | |
| md -g -O1 -fp-model precise -std=c++17 -Wno-unknown-pragmas -MD - | |
| MT src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/mech_ma | |
| pping.cpp.o -MF CMakeFiles/coreneuron-core.dir/mechanism/mech_mapp | |
| ing.cpp.o.d -o CMakeFiles/coreneuron-core.dir/mechanism/mech_mappi | |
| ng.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 220112/J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c | |
| 9c328b53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk | |
| /spack-src/src/coreneuron/mechanism/mech_mapping.cpp | |
| >> 2685 ../../../spack-src/src/nrnpython/nrnpy_nrn.cpp:617:8: error: use o | |
| f undeclared identifier 'nb' | |
| 2686 inline nb::object obj_get_segment(nb::object py_obj) { | |
| 2687 ^ | |
| >> 2688 ../../../spack-src/src/nrnpython/nrnpy_nrn.cpp:617:35: error: use | |
| of undeclared identifier 'nb' | |
| 2689 inline nb::object obj_get_segment(nb::object py_obj) { | |
| 2690 ^ | |
| >> 2691 ../../../spack-src/src/nrnpython/nrnpy_nrn.cpp:619:22: error: use | |
| of undeclared identifier 'obj' | |
| 2692 if (PyList_Check(obj)) { | |
| 2693 ^ | |
| >> 2694 ../../../spack-src/src/nrnpython/nrnpy_nrn.cpp:620:9: error: use o | |
| f undeclared identifier 'nb' | |
| 2695 nb::list obj_list = std::move(py_obj); | |
| 2696 ^ | |
| >> 2697 ../../../spack-src/src/nrnpython/nrnpy_nrn.cpp:641:23: error: use | |
| of undeclared identifier 'nb' | |
| 2698 auto py_obj_seg = nb::borrow(nrnpy_hoc2pyobject(o)); | |
| 2699 ^ | |
| 2700 5 errors generated. | |
| >> 2701 make[2]: *** [src/nrnpython/CMakeFiles/nrnpython.dir/build.make:10 | |
| 7: src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_nrn.cpp.o] Error 1 | |
| 2702 make[2]: *** Waiting for unfinished jobs.... | |
| 2703 [ 34%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/mechanism/register_mech.cpp.o | |
| 2704 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-bu | |
| ild-hrofyme/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/oneapi/icpx | |
| -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DDISABLE_HOC_EXP -DDISABLE_T | |
| IMEOUT -DEIGEN_DONT_PARALLELIZE -DENABLE_SONATA_REPORTS -DENABLE_S | |
| PLAYTREE_QUEUING -DHAVE_MALLOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 | |
| -DMPI_NO_CPPBIND=1 -DNRNMPI=1 -DNRNMPI_DYNAMICLOAD=1 -DOMPI_SKIP_M | |
| PICXX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P22 | |
| 0112/software/install_oneapi-2023.2.0-skylake/libsonata-report-git | |
| .5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/include - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J133 | |
| 7524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3 | |
| bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ | |
| src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| /J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b | |
| 53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack | |
| -build-hrofyme/generated -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neur | |
| on-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi | |
| 4hfp3ravywr4qgb55bujbk/spack-src/external/CLI11/include -isystem / | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J13375 | |
| 24/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bd | |
| bad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ex | |
| ternal/Random123/include -march=skylake -mtune=skylake -fopenmp-si | |
| md -g -O1 -fp-model precise -std=c++17 -Wno-unknown-pragmas -MD - | |
| MT src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/registe | |
| r_mech.cpp.o -MF CMakeFiles/coreneuron-core.dir/mechanism/register | |
| _mech.cpp.o.d -o CMakeFiles/coreneuron-core.dir/mechanism/register | |
| _mech.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P220112/J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f7 | |
| 83c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bu | |
| jbk/spack-src/src/coreneuron/mechanism/register_mech.cpp | |
| 2705 [ 34%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/mechanism/patternstim.cpp.o | |
| 2706 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-bu | |
| ild-hrofyme/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/oneapi/icpx | |
| -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DDISABLE_HOC_EXP -DDISABLE_T | |
| IMEOUT -DEIGEN_DONT_PARALLELIZE -DENABLE_SONATA_REPORTS -DENABLE_S | |
| PLAYTREE_QUEUING -DHAVE_MALLOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 | |
| -DMPI_NO_CPPBIND=1 -DNRNMPI=1 -DNRNMPI_DYNAMICLOAD=1 -DOMPI_SKIP_M | |
| PICXX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P22 | |
| 0112/software/install_oneapi-2023.2.0-skylake/libsonata-report-git | |
| .5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/include - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J133 | |
| 7524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3 | |
| bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ | |
| src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| /J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b | |
| 53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack | |
| -build-hrofyme/generated -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neur | |
| on-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi | |
| 4hfp3ravywr4qgb55bujbk/spack-src/external/CLI11/include -isystem / | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J13375 | |
| 24/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bd | |
| bad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ex | |
| ternal/Random123/include -march=skylake -mtune=skylake -fopenmp-si | |
| md -g -O1 -fp-model precise -std=c++17 -Wno-unknown-pragmas -MD - | |
| MT src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/pattern | |
| stim.cpp.o -MF CMakeFiles/coreneuron-core.dir/mechanism/patternsti | |
| m.cpp.o.d -o CMakeFiles/coreneuron-core.dir/mechanism/patternstim. | |
| cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220 | |
| 112/J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c3 | |
| 28b53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/sp | |
| ack-src/src/coreneuron/mechanism/patternstim.cpp | |
| 2707 [ 34%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/mpi/core/nrnmpi_def_cinc.cpp.o | |
| ... | |
| 2760 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-bu | |
| ild-hrofyme/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/oneapi/icpx | |
| -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DDISABLE_HOC_EXP -DDISABLE_T | |
| IMEOUT -DEIGEN_DONT_PARALLELIZE -DENABLE_SONATA_REPORTS -DENABLE_S | |
| PLAYTREE_QUEUING -DHAVE_MALLOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 | |
| -DMPI_NO_CPPBIND=1 -DNRNMPI=1 -DNRNMPI_DYNAMICLOAD=1 -DOMPI_SKIP_M | |
| PICXX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P22 | |
| 0112/software/install_oneapi-2023.2.0-skylake/libsonata-report-git | |
| .5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/include - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J133 | |
| 7524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3 | |
| bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ | |
| src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| /J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b | |
| 53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack | |
| -build-hrofyme/generated -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neur | |
| on-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi | |
| 4hfp3ravywr4qgb55bujbk/spack-src/external/CLI11/include -isystem / | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J13375 | |
| 24/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bd | |
| bad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ex | |
| ternal/Random123/include -march=skylake -mtune=skylake -fopenmp-si | |
| md -g -O1 -fp-model precise -std=c++17 -Wno-unknown-pragmas -MD - | |
| MT src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/memory_util | |
| s.cpp.o -MF CMakeFiles/coreneuron-core.dir/utils/memory_utils.cpp. | |
| o.d -o CMakeFiles/coreneuron-core.dir/utils/memory_utils.cpp.o -c | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337 | |
| 524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3b | |
| dbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/s | |
| rc/coreneuron/utils/memory_utils.cpp | |
| 2761 [ 35%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/utils/nrn_stats.cpp.o | |
| 2762 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-bu | |
| ild-hrofyme/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/oneapi/icpx | |
| -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DDISABLE_HOC_EXP -DDISABLE_T | |
| IMEOUT -DEIGEN_DONT_PARALLELIZE -DENABLE_SONATA_REPORTS -DENABLE_S | |
| PLAYTREE_QUEUING -DHAVE_MALLOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 | |
| -DMPI_NO_CPPBIND=1 -DNRNMPI=1 -DNRNMPI_DYNAMICLOAD=1 -DOMPI_SKIP_M | |
| PICXX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P22 | |
| 0112/software/install_oneapi-2023.2.0-skylake/libsonata-report-git | |
| .5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/include - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J133 | |
| 7524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3 | |
| bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ | |
| src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| /J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b | |
| 53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack | |
| -build-hrofyme/generated -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neur | |
| on-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi | |
| 4hfp3ravywr4qgb55bujbk/spack-src/external/CLI11/include -isystem / | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J13375 | |
| 24/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bd | |
| bad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ex | |
| ternal/Random123/include -march=skylake -mtune=skylake -fopenmp-si | |
| md -g -O1 -fp-model precise -std=c++17 -Wno-unknown-pragmas -MD - | |
| MT src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrn_stats.c | |
| pp.o -MF CMakeFiles/coreneuron-core.dir/utils/nrn_stats.cpp.o.d -o | |
| CMakeFiles/coreneuron-core.dir/utils/nrn_stats.cpp.o -c /gpfs/bbp | |
| .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337524/spack | |
| -build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bb | |
| ba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/src/corene | |
| uron/utils/nrn_stats.cpp | |
| 2763 [ 35%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/utils/nrnoc_aux.cpp.o | |
| 2764 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-bu | |
| ild-hrofyme/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/oneapi/icpx | |
| -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DDISABLE_HOC_EXP -DDISABLE_T | |
| IMEOUT -DEIGEN_DONT_PARALLELIZE -DENABLE_SONATA_REPORTS -DENABLE_S | |
| PLAYTREE_QUEUING -DHAVE_MALLOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 | |
| -DMPI_NO_CPPBIND=1 -DNRNMPI=1 -DNRNMPI_DYNAMICLOAD=1 -DOMPI_SKIP_M | |
| PICXX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P22 | |
| 0112/software/install_oneapi-2023.2.0-skylake/libsonata-report-git | |
| .5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/include - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J133 | |
| 7524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3 | |
| bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ | |
| src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| /J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b | |
| 53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack | |
| -build-hrofyme/generated -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neur | |
| on-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi | |
| 4hfp3ravywr4qgb55bujbk/spack-src/external/CLI11/include -isystem / | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J13375 | |
| 24/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bd | |
| bad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ex | |
| ternal/Random123/include -march=skylake -mtune=skylake -fopenmp-si | |
| md -g -O1 -fp-model precise -std=c++17 -Wno-unknown-pragmas -MD - | |
| MT src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrnoc_aux.c | |
| pp.o -MF CMakeFiles/coreneuron-core.dir/utils/nrnoc_aux.cpp.o.d -o | |
| CMakeFiles/coreneuron-core.dir/utils/nrnoc_aux.cpp.o -c /gpfs/bbp | |
| .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337524/spack | |
| -build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bb | |
| ba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/src/corene | |
| uron/utils/nrnoc_aux.cpp | |
| 2765 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neuron-git | |
| .fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3r | |
| avywr4qgb55bujbk/spack-build-hrofyme' | |
| >> 2766 make[1]: *** [CMakeFiles/Makefile2:2500: src/nrnpython/CMakeFiles/ | |
| nrnpython.dir/all] Error 2 | |
| 2767 make[1]: *** Waiting for unfinished jobs.... | |
| 2768 [ 35%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/utils/nrntimeout.cpp.o | |
| 2769 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-bu | |
| ild-hrofyme/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/oneapi/icpx | |
| -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DDISABLE_HOC_EXP -DDISABLE_T | |
| IMEOUT -DEIGEN_DONT_PARALLELIZE -DENABLE_SONATA_REPORTS -DENABLE_S | |
| PLAYTREE_QUEUING -DHAVE_MALLOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 | |
| -DMPI_NO_CPPBIND=1 -DNRNMPI=1 -DNRNMPI_DYNAMICLOAD=1 -DOMPI_SKIP_M | |
| PICXX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P22 | |
| 0112/software/install_oneapi-2023.2.0-skylake/libsonata-report-git | |
| .5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/include - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J133 | |
| 7524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3 | |
| bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ | |
| src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| /J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b | |
| 53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack | |
| -build-hrofyme/generated -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neur | |
| on-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi | |
| 4hfp3ravywr4qgb55bujbk/spack-src/external/CLI11/include -isystem / | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J13375 | |
| 24/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bd | |
| bad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ex | |
| ternal/Random123/include -march=skylake -mtune=skylake -fopenmp-si | |
| md -g -O1 -fp-model precise -std=c++17 -Wno-unknown-pragmas -MD - | |
| MT src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrntimeout. | |
| cpp.o -MF CMakeFiles/coreneuron-core.dir/utils/nrntimeout.cpp.o.d | |
| -o CMakeFiles/coreneuron-core.dir/utils/nrntimeout.cpp.o -c /gpfs/ | |
| bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337524/sp | |
| ack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad13 | |
| 0bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/src/cor | |
| eneuron/utils/nrntimeout.cpp | |
| 2770 [ 35%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/utils/progressbar/progressbar.cpp.o | |
| 2771 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-bu | |
| ild-hrofyme/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/oneapi/icpx | |
| -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DDISABLE_HOC_EXP -DDISABLE_T | |
| IMEOUT -DEIGEN_DONT_PARALLELIZE -DENABLE_SONATA_REPORTS -DENABLE_S | |
| PLAYTREE_QUEUING -DHAVE_MALLOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 | |
| -DMPI_NO_CPPBIND=1 -DNRNMPI=1 -DNRNMPI_DYNAMICLOAD=1 -DOMPI_SKIP_M | |
| PICXX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P22 | |
| 0112/software/install_oneapi-2023.2.0-skylake/libsonata-report-git | |
| .5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/include - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J133 | |
| 7524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3 | |
| bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ | |
| src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| /J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b | |
| 53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack | |
| -build-hrofyme/generated -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neur | |
| on-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi | |
| 4hfp3ravywr4qgb55bujbk/spack-src/external/CLI11/include -isystem / | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J13375 | |
| 24/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bd | |
| bad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-src/ex | |
| ternal/Random123/include -march=skylake -mtune=skylake -fopenmp-si | |
| md -g -O1 -fp-model precise -std=c++17 -Wno-unknown-pragmas -MD - | |
| MT src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/progressbar | |
| /progressbar.cpp.o -MF CMakeFiles/coreneuron-core.dir/utils/progre | |
| ssbar/progressbar.cpp.o.d -o CMakeFiles/coreneuron-core.dir/utils/ | |
| progressbar/progressbar.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neuro | |
| n-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi4 | |
| hfp3ravywr4qgb55bujbk/spack-src/src/coreneuron/utils/progressbar/p | |
| rogressbar.cpp | |
| 2772 [ 35%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/utils/randoms/nrnran123.cpp.o | |
| ... | |
| 2786 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-bu | |
| ild-hrofyme/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyo | |
| es/bin/cmake -E cmake_link_script CMakeFiles/coreneuron-core.dir/l | |
| ink.txt --verbose=1 | |
| 2787 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_ | |
| gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ar qc ../../lib/libcore | |
| neuron-core.a "CMakeFiles/coreneuron-core.dir/apps/corenrn_paramet | |
| ers.cpp.o" "CMakeFiles/coreneuron-core.dir/apps/main1.cpp.o" "CMak | |
| eFiles/coreneuron-core.dir/gpu/nrn_acc_manager.cpp.o" "CMakeFiles/ | |
| coreneuron-core.dir/io/core2nrn_data_return.cpp.o" "CMakeFiles/cor | |
| eneuron-core.dir/io/global_vars.cpp.o" "CMakeFiles/coreneuron-core | |
| .dir/io/lfp.cpp.o" "CMakeFiles/coreneuron-core.dir/io/mech_report. | |
| cpp.o" "CMakeFiles/coreneuron-core.dir/io/mem_layout_util.cpp.o" " | |
| CMakeFiles/coreneuron-core.dir/io/mk_mech.cpp.o" "CMakeFiles/coren | |
| euron-core.dir/io/nrn2core_data_init.cpp.o" "CMakeFiles/coreneuron | |
| -core.dir/io/nrn_checkpoint.cpp.o" "CMakeFiles/coreneuron-core.dir | |
| /io/nrn_filehandler.cpp.o" "CMakeFiles/coreneuron-core.dir/io/nrn_ | |
| setup.cpp.o" "CMakeFiles/coreneuron-core.dir/io/output_spikes.cpp. | |
| o" "CMakeFiles/coreneuron-core.dir/io/phase1.cpp.o" "CMakeFiles/co | |
| reneuron-core.dir/io/phase2.cpp.o" "CMakeFiles/coreneuron-core.dir | |
| /io/phase3.cpp.o" "CMakeFiles/coreneuron-core.dir/io/prcellstate.c | |
| pp.o" "CMakeFiles/coreneuron-core.dir/io/reports/nrnreport.cpp.o" | |
| "CMakeFiles/coreneuron-core.dir/io/reports/report_configuration_pa | |
| rser.cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/report_even | |
| t.cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/report_handler | |
| .cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/sonata_report_h | |
| andler.cpp.o" "CMakeFiles/coreneuron-core.dir/io/setup_fornetcon.c | |
| pp.o" "CMakeFiles/coreneuron-core.dir/mechanism/capac.cpp.o" "CMak | |
| eFiles/coreneuron-core.dir/mechanism/eion.cpp.o" "CMakeFiles/coren | |
| euron-core.dir/mechanism/mech_mapping.cpp.o" "CMakeFiles/coreneuro | |
| n-core.dir/mechanism/patternstim.cpp.o" "CMakeFiles/coreneuron-cor | |
| e.dir/mechanism/register_mech.cpp.o" "CMakeFiles/coreneuron-core.d | |
| ir/mpi/core/nrnmpi_def_cinc.cpp.o" "CMakeFiles/coreneuron-core.dir | |
| /network/cvodestb.cpp.o" "CMakeFiles/coreneuron-core.dir/network/m | |
| ultisend.cpp.o" "CMakeFiles/coreneuron-core.dir/network/multisend_ | |
| setup.cpp.o" "CMakeFiles/coreneuron-core.dir/network/netcvode.cpp. | |
| o" "CMakeFiles/coreneuron-core.dir/network/netpar.cpp.o" "CMakeFil | |
| es/coreneuron-core.dir/network/partrans.cpp.o" "CMakeFiles/coreneu | |
| ron-core.dir/network/partrans_setup.cpp.o" "CMakeFiles/coreneuron- | |
| core.dir/network/tqueue.cpp.o" "CMakeFiles/coreneuron-core.dir/per | |
| mute/balance.cpp.o" "CMakeFiles/coreneuron-core.dir/permute/cellor | |
| der.cpp.o" "CMakeFiles/coreneuron-core.dir/permute/cellorder1.cpp. | |
| o" "CMakeFiles/coreneuron-core.dir/permute/cellorder2.cpp.o" "CMak | |
| eFiles/coreneuron-core.dir/permute/data_layout.cpp.o" "CMakeFiles/ | |
| coreneuron-core.dir/permute/node_permute.cpp.o" "CMakeFiles/corene | |
| uron-core.dir/sim/fadvance_core.cpp.o" "CMakeFiles/coreneuron-core | |
| .dir/sim/fast_imem.cpp.o" "CMakeFiles/coreneuron-core.dir/sim/fini | |
| tialize.cpp.o" "CMakeFiles/coreneuron-core.dir/sim/multicore.cpp.o | |
| " "CMakeFiles/coreneuron-core.dir/sim/scopmath/abort.cpp.o" "CMake | |
| Files/coreneuron-core.dir/sim/scopmath/newton_thread.cpp.o" "CMake | |
| Files/coreneuron-core.dir/sim/solve_core.cpp.o" "CMakeFiles/corene | |
| uron-core.dir/sim/treeset_core.cpp.o" "CMakeFiles/coreneuron-core. | |
| dir/utils/ivocvect.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/lp | |
| t.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/memory.cpp.o" "CMak | |
| eFiles/coreneuron-core.dir/utils/memory_utils.cpp.o" "CMakeFiles/c | |
| oreneuron-core.dir/utils/nrn_stats.cpp.o" "CMakeFiles/coreneuron-c | |
| ore.dir/utils/nrnoc_aux.cpp.o" "CMakeFiles/coreneuron-core.dir/uti | |
| ls/nrntimeout.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/progres | |
| sbar/progressbar.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/rand | |
| oms/nrnran123.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/string_ | |
| utils.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/utils.cpp.o" "C | |
| MakeFiles/coreneuron-core.dir/utils/vrecord.cpp.o" "CMakeFiles/cor | |
| eneuron-core.dir/mpi/core/resolve.cpp.o" "CMakeFiles/coreneuron-co | |
| re.dir/__/__/coreneuron/config/config.cpp.o" | |
| 2788 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_ | |
| gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ranlib ../../lib/libcor | |
| eneuron-core.a | |
| 2789 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neuron-git | |
| .fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3r | |
| avywr4qgb55bujbk/spack-build-hrofyme' | |
| 2790 [ 36%] Built target coreneuron-core | |
| 2791 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neuron-git | |
| .fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3r | |
| avywr4qgb55bujbk/spack-build-hrofyme' | |
| >> 2792 make: *** [Makefile:169: all] Error 2 | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337524/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-hrofymebgi4hfp3ravywr4qgb55bujbk/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r1i7n21: task 0: Exited with exit code 1 | |
| section_end:1720018460:step_script [0Ksection_start:1720018460:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102025 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1337524 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102066 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1337524 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102108 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1337524 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1720018461:upload_artifacts_on_failure [0Ksection_start:1720018461:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1720018462:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1720018156:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720018156:resolve_secrets [0Ksection_start:1720018156:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1081016637, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 220112, build ref , job ID 1337526 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1337526_PROD_P2160_CP6_C5 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2285448 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1337526_PROD_P2160_CP6_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112 --ntasks=2 --jobid=2285448 --cpus-per-task=8 --mem=160G | |
| section_end:1720018159:prepare_executor [0Ksection_start:1720018159:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n29 via bbpv1.epfl.ch... | |
| section_end:1720018162:prepare_script [0Ksection_start:1720018162:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720018163:get_sources [0Ksection_start:1720018163:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=158222 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1720018168:restore_cache [0Ksection_start:1720018168:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1337523)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=158323 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1337523 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1720018169:download_artifacts [0Ksection_start:1720018169:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337526/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337526/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337526/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337526/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337526/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337526/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112/J1337526_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2285448/ccache | |
| Config file: /nvme/bbpcihpcproj12/2285448/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Wed Jul 3 16:49:35 2024 | |
| Local storage: | |
| Cache size (GB): 0.45 / 0.51 (88.16%) | |
| Files: 8894 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr | |
| Concretized | |
| -------------------------------- | |
| - gsgpzrz neuron@git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] ixoq64r ^nmodl@git.7beaee9751e233f775a177c819d727abde7e4495=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| ==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g [39/50] | |
| ==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g found: installing from source | |
| ==> No patches needed for libsonata-report | |
| ==> libsonata-report: Executing phase: 'cmake' | |
| ==> libsonata-report: Executing phase: 'build' | |
| ==> libsonata-report: Executing phase: 'install' | |
| ==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g | |
| Stage: 2.00s. Cmake: 4.10s. Build: 1.28s. Install: 0.10s. Post-install: 0.10s. Total: 7.72s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/software/install_gcc-12.3.0-skylake/nmodl-git.7beaee9751e233f775a177c819d727abde7e4495_develop-ixoq64 | |
| ==> Installing neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc [50/50] | |
| ==> No binary for neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 2: | |
| 'make' '-j8' | |
| 33 errors found in build log: | |
| 2901 [ 29%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/utils/vrecord.cpp.o | |
| 2902 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337526/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc/spack-bu | |
| ild-gsgpzrz/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/nvhpc/nvc++ | |
| -DCORENEURON_BUILD -DCORENEURON_CUDA_PROFILING -DCORENEURON_ENABLE | |
| _GPU -DCORENEURON_USE_BOOST_POOL -DCORENRN_BUILD=1 -DDISABLE_HOC_E | |
| XP -DDISABLE_TIMEOUT -DEIGEN_DONT_PARALLELIZE -DEIGEN_DONT_VECTORI | |
| ZE=1 -DENABLE_SONATA_REPORTS -DENABLE_SPLAYTREE_QUEUING -DHAVE_MAL | |
| LOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRNMPI | |
| =1 -DOMPI_SKIP_MPICXX=1 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-0 | |
| 1/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb/ta | |
| rgets/x86_64-linux/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P220112/software/install_nvhpc-23.1-skylake/libson | |
| ata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az | |
| 6cwi/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P220112/J1337526/spack-build/spack-stage-neuron-git.fd8a070a41f7 | |
| 83c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2 | |
| hcc/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P220112/J1337526/spack-build/spack-stage-neuron-git.fd8a070 | |
| a41f783c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzk | |
| hwnh2hcc/spack-build-gsgpzrz/generated -isystem /gpfs/bbp.cscs.ch/ | |
| ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337526/spack-build/sp | |
| ack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_deve | |
| lop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc/spack-src/external/CLI11/incl | |
| ude -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/ | |
| P220112/J1337526/spack-build/spack-stage-neuron-git.fd8a070a41f783 | |
| c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hc | |
| c/spack-src/external/Random123/include -isystem /gpfs/bbp.cscs.ch/ | |
| ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake | |
| /boost-1.83.0-2quv7w/include -tp haswell -g -O1 -fno-omit-frame-po | |
| inter --c++17 --diag_suppress=111,550 -cuda -gpu=cuda12.0,lineinf | |
| o,cc70,cc80 -acc -MD -MT src/coreneuron/CMakeFiles/coreneuron-core | |
| .dir/utils/vrecord.cpp.o -MF CMakeFiles/coreneuron-core.dir/utils/ | |
| vrecord.cpp.o.d -o CMakeFiles/coreneuron-core.dir/utils/vrecord.cp | |
| p.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P22011 | |
| 2/J1337526/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328 | |
| b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc/spac | |
| k-src/src/coreneuron/utils/vrecord.cpp | |
| 2903 [ 29%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/mpi/core/resolve.cpp.o | |
| 2904 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337526/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc/spack-bu | |
| ild-gsgpzrz/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/nvhpc/nvc++ | |
| -DCORENEURON_BUILD -DCORENEURON_CUDA_PROFILING -DCORENEURON_ENABLE | |
| _GPU -DCORENEURON_USE_BOOST_POOL -DCORENRN_BUILD=1 -DDISABLE_HOC_E | |
| XP -DDISABLE_TIMEOUT -DEIGEN_DONT_PARALLELIZE -DEIGEN_DONT_VECTORI | |
| ZE=1 -DENABLE_SONATA_REPORTS -DENABLE_SPLAYTREE_QUEUING -DHAVE_MAL | |
| LOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRNMPI | |
| =1 -DOMPI_SKIP_MPICXX=1 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-0 | |
| 1/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb/ta | |
| rgets/x86_64-linux/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P220112/software/install_nvhpc-23.1-skylake/libson | |
| ata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az | |
| 6cwi/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P220112/J1337526/spack-build/spack-stage-neuron-git.fd8a070a41f7 | |
| 83c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2 | |
| hcc/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P220112/J1337526/spack-build/spack-stage-neuron-git.fd8a070 | |
| a41f783c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzk | |
| hwnh2hcc/spack-build-gsgpzrz/generated -isystem /gpfs/bbp.cscs.ch/ | |
| ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337526/spack-build/sp | |
| ack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_deve | |
| lop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc/spack-src/external/CLI11/incl | |
| ude -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/ | |
| P220112/J1337526/spack-build/spack-stage-neuron-git.fd8a070a41f783 | |
| c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hc | |
| c/spack-src/external/Random123/include -isystem /gpfs/bbp.cscs.ch/ | |
| ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake | |
| /boost-1.83.0-2quv7w/include -tp haswell -g -O1 -fno-omit-frame-po | |
| inter --c++17 --diag_suppress=111,550 -cuda -gpu=cuda12.0,lineinf | |
| o,cc70,cc80 -acc -MD -MT src/coreneuron/CMakeFiles/coreneuron-core | |
| .dir/mpi/core/resolve.cpp.o -MF CMakeFiles/coreneuron-core.dir/mpi | |
| /core/resolve.cpp.o.d -o CMakeFiles/coreneuron-core.dir/mpi/core/r | |
| esolve.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P220112/J1337526/spack-build/spack-stage-neuron-git.fd8a070a41f | |
| 783c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh | |
| 2hcc/spack-src/src/coreneuron/mpi/core/resolve.cpp | |
| 2905 [ 29%] Building CXX object src/coreneuron/CMakeFiles/coreneuron-co | |
| re.dir/__/__/coreneuron/config/config.cpp.o | |
| 2906 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337526/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc/spack-bu | |
| ild-gsgpzrz/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P220112/J1337521/spack/lib/spack/env/nvhpc/nvc++ | |
| -DCORENEURON_BUILD -DCORENEURON_CUDA_PROFILING -DCORENEURON_ENABLE | |
| _GPU -DCORENEURON_USE_BOOST_POOL -DCORENRN_BUILD=1 -DDISABLE_HOC_E | |
| XP -DDISABLE_TIMEOUT -DEIGEN_DONT_PARALLELIZE -DEIGEN_DONT_VECTORI | |
| ZE=1 -DENABLE_SONATA_REPORTS -DENABLE_SPLAYTREE_QUEUING -DHAVE_MAL | |
| LOC_H -DLAYOUT=0 -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRNMPI | |
| =1 -DOMPI_SKIP_MPICXX=1 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-0 | |
| 1/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb/ta | |
| rgets/x86_64-linux/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P220112/software/install_nvhpc-23.1-skylake/libson | |
| ata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az | |
| 6cwi/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P220112/J1337526/spack-build/spack-stage-neuron-git.fd8a070a41f7 | |
| 83c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2 | |
| hcc/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P220112/J1337526/spack-build/spack-stage-neuron-git.fd8a070 | |
| a41f783c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzk | |
| hwnh2hcc/spack-build-gsgpzrz/generated -isystem /gpfs/bbp.cscs.ch/ | |
| ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337526/spack-build/sp | |
| ack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_deve | |
| lop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc/spack-src/external/CLI11/incl | |
| ude -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/ | |
| P220112/J1337526/spack-build/spack-stage-neuron-git.fd8a070a41f783 | |
| c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hc | |
| c/spack-src/external/Random123/include -isystem /gpfs/bbp.cscs.ch/ | |
| ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake | |
| /boost-1.83.0-2quv7w/include -tp haswell -g -O1 -fno-omit-frame-po | |
| inter --c++17 --diag_suppress=111,550 -cuda -gpu=cuda12.0,lineinf | |
| o,cc70,cc80 -acc -MD -MT src/coreneuron/CMakeFiles/coreneuron-core | |
| .dir/__/__/coreneuron/config/config.cpp.o -MF CMakeFiles/coreneuro | |
| n-core.dir/__/__/coreneuron/config/config.cpp.o.d -o CMakeFiles/co | |
| reneuron-core.dir/__/__/coreneuron/config/config.cpp.o -c /gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337526/spac | |
| k-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad130b | |
| bba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc/spack-build-gsgpzrz | |
| /coreneuron/config/config.cpp | |
| >> 2907 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 617: error: | |
| explicit type is missing ("int" assumed) | |
| 2908 inline nb::object obj_get_segment(nb::object py_obj) { | |
| 2909 ^ | |
| 2910 | |
| >> 2911 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 617: error: | |
| expected a ";" | |
| 2912 inline nb::object obj_get_segment(nb::object py_obj) { | |
| 2913 ^ | |
| 2914 | |
| 2915 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 758: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2916 return NULL; | |
| 2917 ^ | |
| 2918 | |
| 2919 Remark: individual warnings can be suppressed with "--diag_suppres | |
| s <warning-name>" | |
| 2920 | |
| >> 2921 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 759: error: | |
| expected a declaration | |
| 2922 } | |
| 2923 ^ | |
| 2924 | |
| >> 2925 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 761: error: | |
| expected a declaration | |
| 2926 } else { | |
| 2927 ^ | |
| 2928 | |
| 2929 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 765: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2930 Py_RETURN_NONE; | |
| 2931 ^ | |
| 2932 | |
| >> 2933 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 766: error: | |
| expected a declaration | |
| 2934 } | |
| 2935 ^ | |
| 2936 | |
| 2937 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 829: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2938 return NULL; | |
| 2939 ^ | |
| 2940 | |
| >> 2941 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 830: error: | |
| expected a declaration | |
| 2942 } | |
| 2943 ^ | |
| 2944 | |
| >> 2945 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 833: error: | |
| expected a declaration | |
| 2946 } else { | |
| 2947 ^ | |
| 2948 | |
| 2949 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 842: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2950 Py_RETURN_FALSE; | |
| 2951 ^ | |
| 2952 | |
| >> 2953 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 843: error: | |
| expected a declaration | |
| 2954 } | |
| 2955 ^ | |
| 2956 | |
| 2957 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 987: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2958 static PyObject* nrnpy_psection; | |
| 2959 ^ | |
| 2960 | |
| >> 2961 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 997: error: | |
| identifier "nrnpy_psection" is undefined | |
| 2962 if (nrnpy_psection) { | |
| 2963 ^ | |
| 2964 | |
| >> 2965 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 1012: error | |
| : identifier "nrnpy_psection" is undefined | |
| 2966 if (nrnpy_psection) { | |
| 2967 ^ | |
| 2968 | |
| >> 2969 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2737: error | |
| : identifier "NPySecObj_name_safe" is undefined | |
| 2970 (PyCFunction) NPySecObj_name_safe, | |
| 2971 ^ | |
| 2972 | |
| >> 2973 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2782: error | |
| : identifier "hoc_internal_name_safe" is undefined | |
| 2974 (PyCFunction) hoc_internal_name_safe, | |
| 2975 ^ | |
| 2976 | |
| >> 2977 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2816: error | |
| : identifier "NPySecObj_n3d_safe" is undefined | |
| 2978 {"n3d", (PyCFunction) NPySecObj_n3d_safe, METH_NOARGS, "Retu | |
| rns the number of 3D points."}, | |
| 2979 ^ | |
| 2980 | |
| >> 2981 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2818: error | |
| : identifier "NPySecObj_x3d_safe" is undefined | |
| 2982 (PyCFunction) NPySecObj_x3d_safe, | |
| 2983 ^ | |
| 2984 | |
| >> 2985 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2822: error | |
| : identifier "NPySecObj_y3d_safe" is undefined | |
| 2986 (PyCFunction) NPySecObj_y3d_safe, | |
| 2987 ^ | |
| 2988 | |
| >> 2989 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2826: error | |
| : identifier "NPySecObj_z3d_safe" is undefined | |
| 2990 (PyCFunction) NPySecObj_z3d_safe, | |
| 2991 ^ | |
| 2992 | |
| >> 2993 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2830: error | |
| : identifier "NPySecObj_arc3d_safe" is undefined | |
| 2994 (PyCFunction) NPySecObj_arc3d_safe, | |
| 2995 ^ | |
| 2996 | |
| >> 2997 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2834: error | |
| : identifier "NPySecObj_diam3d_safe" is undefined | |
| 2998 (PyCFunction) NPySecObj_diam3d_safe, | |
| 2999 ^ | |
| 3000 | |
| >> 3001 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2838: error | |
| : identifier "NPySecObj_spine3d_safe" is undefined | |
| 3002 (PyCFunction) NPySecObj_spine3d_safe, | |
| 3003 ^ | |
| 3004 | |
| >> 3005 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2841: error | |
| : identifier "NPySecObj_pt3dremove" is undefined | |
| 3006 {"pt3dremove", (PyCFunction) NPySecObj_pt3dremove, METH_VARA | |
| RGS, "Removes the ith 3D point."}, | |
| 3007 ^ | |
| 3008 | |
| >> 3009 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2843: error | |
| : identifier "NPySecObj_pt3dclear_safe" is undefined | |
| 3010 (PyCFunction) NPySecObj_pt3dclear_safe, | |
| 3011 ^ | |
| 3012 | |
| >> 3013 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2847: error | |
| : identifier "NPySecObj_pt3dinsert_safe" is undefined | |
| 3014 (PyCFunction) NPySecObj_pt3dinsert_safe, | |
| 3015 ^ | |
| 3016 | |
| >> 3017 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2852: error | |
| : identifier "NPySecObj_pt3dchange_safe" is undefined | |
| 3018 (PyCFunction) NPySecObj_pt3dchange_safe, | |
| 3019 ^ | |
| 3020 | |
| >> 3021 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2857: error | |
| : identifier "NPySecObj_pt3dadd_safe" is undefined | |
| 3022 (PyCFunction) NPySecObj_pt3dadd_safe, | |
| 3023 ^ | |
| 3024 | |
| >> 3025 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2862: error | |
| : identifier "NPySecObj_pt3dstyle_safe" is undefined | |
| 3026 (PyCFunction) NPySecObj_pt3dstyle_safe, | |
| 3027 ^ | |
| 3028 | |
| >> 3029 "../../../spack-src/src/nrnpython/nrnpy_nrn.h", line 3: error: ide | |
| ntifier "pysec_repr_safe" is undefined | |
| 3030 {Py_tp_repr, (void*) pysec_repr_safe}, | |
| 3031 ^ | |
| 3032 | |
| >> 3033 "../../../spack-src/src/nrnpython/nrnpy_nrn.h", line 61: error: id | |
| entifier "pyseg_repr_safe" is undefined | |
| 3034 {Py_tp_repr, (void*) pyseg_repr_safe}, | |
| 3035 ^ | |
| 3036 | |
| >> 3037 "../../../spack-src/src/nrnpython/nrnpy_nrn.h", line 106: error: i | |
| dentifier "NPyMechObj_init_safe" is undefined | |
| 3038 {Py_tp_init, (void*) NPyMechObj_init_safe}, | |
| 3039 ^ | |
| 3040 | |
| >> 3041 "../../../spack-src/src/nrnpython/nrnpy_nrn.h", line 153: error: i | |
| dentifier "NPyRangeVar_init_safe" is undefined | |
| 3042 {Py_tp_init, (void*) NPyRangeVar_init_safe}, | |
| 3043 ^ | |
| 3044 | |
| >> 3045 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 3075: error | |
| : identifier "o2loc2" is undefined | |
| 3046 nrnpy_o2loc2_p_ = o2loc2; | |
| 3047 ^ | |
| 3048 | |
| 3049 30 errors detected in the compilation of "../../../spack-src/src/n | |
| rnpython/nrnpy_nrn.cpp". | |
| >> 3050 make[2]: *** [src/nrnpython/CMakeFiles/nrnpython.dir/build.make:10 | |
| 7: src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_nrn.cpp.o] Error 2 | |
| 3051 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P220112/J1337526/spack-build/spack-stage-neuron-git | |
| .fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5oh | |
| piloqdzkhwnh2hcc/spack-build-gsgpzrz' | |
| >> 3052 make[1]: *** [CMakeFiles/Makefile2:2729: src/nrnpython/CMakeFiles/ | |
| nrnpython.dir/all] Error 2 | |
| 3053 make[1]: *** Waiting for unfinished jobs.... | |
| 3054 [ 29%] Linking CXX static library ../../lib/libcoreneuron-core.a | |
| 3055 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337526/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc/spack-bu | |
| ild-gsgpzrz/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyo | |
| es/bin/cmake -P CMakeFiles/coreneuron-core.dir/cmake_clean_target. | |
| cmake | |
| 3056 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337526/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc/spack-bu | |
| ild-gsgpzrz/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyo | |
| es/bin/cmake -E cmake_link_script CMakeFiles/coreneuron-core.dir/l | |
| ink.txt --verbose=1 | |
| 3057 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ar qc ../../lib/libcor | |
| eneuron-core.a "CMakeFiles/coreneuron-core.dir/apps/corenrn_parame | |
| ters.cpp.o" "CMakeFiles/coreneuron-core.dir/apps/main1.cpp.o" "CMa | |
| keFiles/coreneuron-core.dir/gpu/nrn_acc_manager.cpp.o" "CMakeFiles | |
| /coreneuron-core.dir/io/core2nrn_data_return.cpp.o" "CMakeFiles/co | |
| reneuron-core.dir/io/global_vars.cpp.o" "CMakeFiles/coreneuron-cor | |
| e.dir/io/lfp.cpp.o" "CMakeFiles/coreneuron-core.dir/io/mech_report | |
| .cpp.o" "CMakeFiles/coreneuron-core.dir/io/mem_layout_util.cpp.o" | |
| "CMakeFiles/coreneuron-core.dir/io/mk_mech.cpp.o" "CMakeFiles/core | |
| neuron-core.dir/io/nrn2core_data_init.cpp.o" "CMakeFiles/coreneuro | |
| n-core.dir/io/nrn_checkpoint.cpp.o" "CMakeFiles/coreneuron-core.di | |
| r/io/nrn_filehandler.cpp.o" "CMakeFiles/coreneuron-core.dir/io/nrn | |
| _setup.cpp.o" "CMakeFiles/coreneuron-core.dir/io/output_spikes.cpp | |
| .o" "CMakeFiles/coreneuron-core.dir/io/phase1.cpp.o" "CMakeFiles/c | |
| oreneuron-core.dir/io/phase2.cpp.o" "CMakeFiles/coreneuron-core.di | |
| r/io/phase3.cpp.o" "CMakeFiles/coreneuron-core.dir/io/prcellstate. | |
| cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/nrnreport.cpp.o" | |
| "CMakeFiles/coreneuron-core.dir/io/reports/report_configuration_p | |
| arser.cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/report_eve | |
| nt.cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/report_handle | |
| r.cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/sonata_report_ | |
| handler.cpp.o" "CMakeFiles/coreneuron-core.dir/io/setup_fornetcon. | |
| cpp.o" "CMakeFiles/coreneuron-core.dir/mechanism/capac.cpp.o" "CMa | |
| keFiles/coreneuron-core.dir/mechanism/eion.cpp.o" "CMakeFiles/core | |
| neuron-core.dir/mechanism/mech_mapping.cpp.o" "CMakeFiles/coreneur | |
| on-core.dir/mechanism/patternstim.cpp.o" "CMakeFiles/coreneuron-co | |
| re.dir/mechanism/register_mech.cpp.o" "CMakeFiles/coreneuron-core. | |
| dir/mpi/core/nrnmpi_def_cinc.cpp.o" "CMakeFiles/coreneuron-core.di | |
| r/network/cvodestb.cpp.o" "CMakeFiles/coreneuron-core.dir/network/ | |
| multisend.cpp.o" "CMakeFiles/coreneuron-core.dir/network/multisend | |
| _setup.cpp.o" "CMakeFiles/coreneuron-core.dir/network/netcvode.cpp | |
| .o" "CMakeFiles/coreneuron-core.dir/network/netpar.cpp.o" "CMakeFi | |
| les/coreneuron-core.dir/network/partrans.cpp.o" "CMakeFiles/corene | |
| uron-core.dir/network/partrans_setup.cpp.o" "CMakeFiles/coreneuron | |
| -core.dir/network/tqueue.cpp.o" "CMakeFiles/coreneuron-core.dir/pe | |
| rmute/balance.cpp.o" "CMakeFiles/coreneuron-core.dir/permute/cello | |
| rder.cpp.o" "CMakeFiles/coreneuron-core.dir/permute/cellorder1.cpp | |
| .o" "CMakeFiles/coreneuron-core.dir/permute/cellorder2.cpp.o" "CMa | |
| keFiles/coreneuron-core.dir/permute/data_layout.cpp.o" "CMakeFiles | |
| /coreneuron-core.dir/permute/node_permute.cpp.o" "CMakeFiles/coren | |
| euron-core.dir/sim/fadvance_core.cpp.o" "CMakeFiles/coreneuron-cor | |
| e.dir/sim/fast_imem.cpp.o" "CMakeFiles/coreneuron-core.dir/sim/fin | |
| itialize.cpp.o" "CMakeFiles/coreneuron-core.dir/sim/multicore.cpp. | |
| o" "CMakeFiles/coreneuron-core.dir/sim/scopmath/abort.cpp.o" "CMak | |
| eFiles/coreneuron-core.dir/sim/scopmath/newton_thread.cpp.o" "CMak | |
| eFiles/coreneuron-core.dir/sim/solve_core.cpp.o" "CMakeFiles/coren | |
| euron-core.dir/sim/treeset_core.cpp.o" "CMakeFiles/coreneuron-core | |
| .dir/utils/ivocvect.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/l | |
| pt.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/memory.cpp.o" "CMa | |
| keFiles/coreneuron-core.dir/utils/memory_utils.cpp.o" "CMakeFiles/ | |
| coreneuron-core.dir/utils/nrn_stats.cpp.o" "CMakeFiles/coreneuron- | |
| core.dir/utils/nrnoc_aux.cpp.o" "CMakeFiles/coreneuron-core.dir/ut | |
| ils/nrntimeout.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/progre | |
| ssbar/progressbar.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/ran | |
| doms/nrnran123.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/string | |
| _utils.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/utils.cpp.o" " | |
| CMakeFiles/coreneuron-core.dir/utils/vrecord.cpp.o" "CMakeFiles/co | |
| reneuron-core.dir/mpi/core/resolve.cpp.o" "CMakeFiles/coreneuron-c | |
| ore.dir/__/__/coreneuron/config/config.cpp.o" CMakeFiles/corenrn_m | |
| pi.dir/mpi/lib/mpispike.cpp.o CMakeFiles/corenrn_mpi.dir/mpi/lib/n | |
| rnmpi.cpp.o | |
| 3058 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ranlib ../../lib/libco | |
| reneuron-core.a | |
| 3059 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P220112/J1337526/spack-build/spack-stage-neuron-git | |
| .fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5oh | |
| piloqdzkhwnh2hcc/spack-build-gsgpzrz' | |
| 3060 [ 29%] Built target coreneuron-core | |
| 3061 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P220112/J1337526/spack-build/spack-stage-neuron-git | |
| .fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5oh | |
| piloqdzkhwnh2hcc/spack-build-gsgpzrz' | |
| >> 3062 make: *** [Makefile:169: all] Error 2 | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337526/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-gsgpzrzj2hiqg5ohpiloqdzkhwnh2hcc/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r1i7n29: task 0: Exited with exit code 1 | |
| section_end:1720018480:step_script [0Ksection_start:1720018480:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=165227 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1337526 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=165269 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1337526 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=165311 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1337526 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1720018482:upload_artifacts_on_failure [0Ksection_start:1720018482:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1720018483:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1720018158:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720018158:resolve_secrets [0Ksection_start:1720018158:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor628269147, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 220112, build ref , job ID 1337528 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1337528_PROD_P2160_CP8_C10 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2285450 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1337528_PROD_P2160_CP8_C10 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112 --ntasks=2 --jobid=2285450 --cpus-per-task=8 --mem=160G | |
| section_end:1720018159:prepare_executor [0Ksection_start:1720018159:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n2 via bbpv1.epfl.ch... | |
| section_end:1720018161:prepare_script [0Ksection_start:1720018161:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720018162:get_sources [0Ksection_start:1720018162:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=227873 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1720018167:restore_cache [0Ksection_start:1720018167:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1337523)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=228290 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1337523 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1720018168:download_artifacts [0Ksection_start:1720018168:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337528/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337528/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337528/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337528/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337528/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337528/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112/J1337528_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2285450/ccache | |
| Config file: /nvme/bbpcihpcproj12/2285450/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Wed Jul 3 16:49:34 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (90.54%) | |
| Files: 10143 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr | |
| - ^caliper+cuda cuda_arch=70 | |
| Concretized | |
| -------------------------------- | |
| - 6crjgtu neuron@git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| - vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake | |
| [^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake | |
| [^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] ixoq64r ^nmodl@git.7beaee9751e233f775a177c819d727abde7e4495=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/software/install_gcc-12.3.0-skylake/nmodl-git.7beaee9751e233f775a177c819d727abde7e4495_develop-ixoq64 | |
| ==> Installing caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 [54/55] | |
| ==> No binary for caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 found: installing from source | |
| ==> Fetching https://github.com/LLNL/Caliper/archive/v2.11.0.tar.gz | |
| ==> No patches needed for caliper | |
| ==> caliper: Executing phase: 'cmake' | |
| ==> caliper: Executing phase: 'build' | |
| ==> caliper: Executing phase: 'install' | |
| ==> caliper: Successfully installed caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 | |
| Stage: 2.98s. Cmake: 9.28s. Build: 7.92s. Install: 1.05s. Post-install: 0.18s. Total: 21.71s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi | |
| ==> Installing neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop-6crjgtubkhze24qbfmvr6354odzcidqv [55/55] | |
| ==> No binary for neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop-6crjgtubkhze24qbfmvr6354odzcidqv found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 2: | |
| 'make' '-j8' | |
| 33 errors found in build log: | |
| 2896 ^ | |
| 2897 | |
| 2898 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM | |
| ath.h", line 1443: warning: integer conversion resulted in a chang | |
| e of sign [integer_sign_change] | |
| 2899 Packet8bf sign_mask = _mm_set1_epi16(static_cast<numext::uint1 | |
| 6_t>(0x8000)); | |
| 2900 ^ | |
| 2901 | |
| >> 2902 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 617: error: | |
| explicit type is missing ("int" assumed) | |
| 2903 inline nb::object obj_get_segment(nb::object py_obj) { | |
| 2904 ^ | |
| 2905 | |
| >> 2906 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 617: error: | |
| expected a ";" | |
| 2907 inline nb::object obj_get_segment(nb::object py_obj) { | |
| 2908 ^ | |
| 2909 | |
| 2910 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 758: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2911 return NULL; | |
| 2912 ^ | |
| 2913 | |
| 2914 Remark: individual warnings can be suppressed with "--diag_suppres | |
| s <warning-name>" | |
| 2915 | |
| >> 2916 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 759: error: | |
| expected a declaration | |
| 2917 } | |
| 2918 ^ | |
| 2919 | |
| >> 2920 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 761: error: | |
| expected a declaration | |
| 2921 } else { | |
| 2922 ^ | |
| 2923 | |
| 2924 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 765: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2925 Py_RETURN_NONE; | |
| 2926 ^ | |
| 2927 | |
| >> 2928 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 766: error: | |
| expected a declaration | |
| 2929 } | |
| 2930 ^ | |
| 2931 | |
| 2932 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 829: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2933 return NULL; | |
| 2934 ^ | |
| 2935 | |
| >> 2936 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 830: error: | |
| expected a declaration | |
| 2937 } | |
| 2938 ^ | |
| 2939 | |
| >> 2940 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 833: error: | |
| expected a declaration | |
| 2941 } else { | |
| 2942 ^ | |
| 2943 | |
| 2944 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 842: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2945 Py_RETURN_FALSE; | |
| 2946 ^ | |
| 2947 | |
| >> 2948 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 843: error: | |
| expected a declaration | |
| 2949 } | |
| 2950 ^ | |
| 2951 | |
| 2952 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 987: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2953 static PyObject* nrnpy_psection; | |
| 2954 ^ | |
| 2955 | |
| >> 2956 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 997: error: | |
| identifier "nrnpy_psection" is undefined | |
| 2957 if (nrnpy_psection) { | |
| 2958 ^ | |
| 2959 | |
| >> 2960 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 1012: error | |
| : identifier "nrnpy_psection" is undefined | |
| 2961 if (nrnpy_psection) { | |
| 2962 ^ | |
| 2963 | |
| >> 2964 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2737: error | |
| : identifier "NPySecObj_name_safe" is undefined | |
| 2965 (PyCFunction) NPySecObj_name_safe, | |
| 2966 ^ | |
| 2967 | |
| >> 2968 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2782: error | |
| : identifier "hoc_internal_name_safe" is undefined | |
| 2969 (PyCFunction) hoc_internal_name_safe, | |
| 2970 ^ | |
| 2971 | |
| >> 2972 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2816: error | |
| : identifier "NPySecObj_n3d_safe" is undefined | |
| 2973 {"n3d", (PyCFunction) NPySecObj_n3d_safe, METH_NOARGS, "Retu | |
| rns the number of 3D points."}, | |
| 2974 ^ | |
| 2975 | |
| >> 2976 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2818: error | |
| : identifier "NPySecObj_x3d_safe" is undefined | |
| 2977 (PyCFunction) NPySecObj_x3d_safe, | |
| 2978 ^ | |
| 2979 | |
| >> 2980 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2822: error | |
| : identifier "NPySecObj_y3d_safe" is undefined | |
| 2981 (PyCFunction) NPySecObj_y3d_safe, | |
| 2982 ^ | |
| 2983 | |
| >> 2984 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2826: error | |
| : identifier "NPySecObj_z3d_safe" is undefined | |
| 2985 (PyCFunction) NPySecObj_z3d_safe, | |
| 2986 ^ | |
| 2987 | |
| >> 2988 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2830: error | |
| : identifier "NPySecObj_arc3d_safe" is undefined | |
| 2989 (PyCFunction) NPySecObj_arc3d_safe, | |
| 2990 ^ | |
| 2991 | |
| >> 2992 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2834: error | |
| : identifier "NPySecObj_diam3d_safe" is undefined | |
| 2993 (PyCFunction) NPySecObj_diam3d_safe, | |
| 2994 ^ | |
| 2995 | |
| >> 2996 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2838: error | |
| : identifier "NPySecObj_spine3d_safe" is undefined | |
| 2997 (PyCFunction) NPySecObj_spine3d_safe, | |
| 2998 ^ | |
| 2999 | |
| >> 3000 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2841: error | |
| : identifier "NPySecObj_pt3dremove" is undefined | |
| 3001 {"pt3dremove", (PyCFunction) NPySecObj_pt3dremove, METH_VARA | |
| RGS, "Removes the ith 3D point."}, | |
| 3002 ^ | |
| 3003 | |
| >> 3004 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2843: error | |
| : identifier "NPySecObj_pt3dclear_safe" is undefined | |
| 3005 (PyCFunction) NPySecObj_pt3dclear_safe, | |
| 3006 ^ | |
| 3007 | |
| >> 3008 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2847: error | |
| : identifier "NPySecObj_pt3dinsert_safe" is undefined | |
| 3009 (PyCFunction) NPySecObj_pt3dinsert_safe, | |
| 3010 ^ | |
| 3011 | |
| >> 3012 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2852: error | |
| : identifier "NPySecObj_pt3dchange_safe" is undefined | |
| 3013 (PyCFunction) NPySecObj_pt3dchange_safe, | |
| 3014 ^ | |
| 3015 | |
| >> 3016 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2857: error | |
| : identifier "NPySecObj_pt3dadd_safe" is undefined | |
| 3017 (PyCFunction) NPySecObj_pt3dadd_safe, | |
| 3018 ^ | |
| 3019 | |
| >> 3020 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2862: error | |
| : identifier "NPySecObj_pt3dstyle_safe" is undefined | |
| 3021 (PyCFunction) NPySecObj_pt3dstyle_safe, | |
| 3022 ^ | |
| 3023 | |
| >> 3024 "../../../spack-src/src/nrnpython/nrnpy_nrn.h", line 3: error: ide | |
| ntifier "pysec_repr_safe" is undefined | |
| 3025 {Py_tp_repr, (void*) pysec_repr_safe}, | |
| 3026 ^ | |
| 3027 | |
| >> 3028 "../../../spack-src/src/nrnpython/nrnpy_nrn.h", line 61: error: id | |
| entifier "pyseg_repr_safe" is undefined | |
| 3029 {Py_tp_repr, (void*) pyseg_repr_safe}, | |
| 3030 ^ | |
| 3031 | |
| >> 3032 "../../../spack-src/src/nrnpython/nrnpy_nrn.h", line 106: error: i | |
| dentifier "NPyMechObj_init_safe" is undefined | |
| 3033 {Py_tp_init, (void*) NPyMechObj_init_safe}, | |
| 3034 ^ | |
| 3035 | |
| >> 3036 "../../../spack-src/src/nrnpython/nrnpy_nrn.h", line 153: error: i | |
| dentifier "NPyRangeVar_init_safe" is undefined | |
| 3037 {Py_tp_init, (void*) NPyRangeVar_init_safe}, | |
| 3038 ^ | |
| 3039 | |
| >> 3040 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 3075: error | |
| : identifier "o2loc2" is undefined | |
| 3041 nrnpy_o2loc2_p_ = o2loc2; | |
| 3042 ^ | |
| 3043 | |
| 3044 30 errors detected in the compilation of "../../../spack-src/src/n | |
| rnpython/nrnpy_nrn.cpp". | |
| >> 3045 make[2]: *** [src/nrnpython/CMakeFiles/nrnpython.dir/build.make:10 | |
| 7: src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_nrn.cpp.o] Error 2 | |
| 3046 make[2]: *** Waiting for unfinished jobs.... | |
| 3047 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P220112/J1337528/spack-build/spack-stage-neuron-git | |
| .fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-6crjgtubkhze24qb | |
| fmvr6354odzcidqv/spack-build-6crjgtu' | |
| >> 3048 make[1]: *** [CMakeFiles/Makefile2:2729: src/nrnpython/CMakeFiles/ | |
| nrnpython.dir/all] Error 2 | |
| 3049 make[1]: *** Waiting for unfinished jobs.... | |
| 3050 [ 29%] Linking CXX static library ../../lib/libcoreneuron-core.a | |
| 3051 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337528/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-6crjgtubkhze24qbfmvr6354odzcidqv/spack-bu | |
| ild-6crjgtu/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyo | |
| es/bin/cmake -P CMakeFiles/coreneuron-core.dir/cmake_clean_target. | |
| cmake | |
| 3052 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337528/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-6crjgtubkhze24qbfmvr6354odzcidqv/spack-bu | |
| ild-6crjgtu/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyo | |
| es/bin/cmake -E cmake_link_script CMakeFiles/coreneuron-core.dir/l | |
| ink.txt --verbose=1 | |
| 3053 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ar qc ../../lib/libcor | |
| eneuron-core.a "CMakeFiles/coreneuron-core.dir/apps/corenrn_parame | |
| ters.cpp.o" "CMakeFiles/coreneuron-core.dir/apps/main1.cpp.o" "CMa | |
| keFiles/coreneuron-core.dir/gpu/nrn_acc_manager.cpp.o" "CMakeFiles | |
| /coreneuron-core.dir/io/core2nrn_data_return.cpp.o" "CMakeFiles/co | |
| reneuron-core.dir/io/global_vars.cpp.o" "CMakeFiles/coreneuron-cor | |
| e.dir/io/lfp.cpp.o" "CMakeFiles/coreneuron-core.dir/io/mech_report | |
| .cpp.o" "CMakeFiles/coreneuron-core.dir/io/mem_layout_util.cpp.o" | |
| "CMakeFiles/coreneuron-core.dir/io/mk_mech.cpp.o" "CMakeFiles/core | |
| neuron-core.dir/io/nrn2core_data_init.cpp.o" "CMakeFiles/coreneuro | |
| n-core.dir/io/nrn_checkpoint.cpp.o" "CMakeFiles/coreneuron-core.di | |
| r/io/nrn_filehandler.cpp.o" "CMakeFiles/coreneuron-core.dir/io/nrn | |
| _setup.cpp.o" "CMakeFiles/coreneuron-core.dir/io/output_spikes.cpp | |
| .o" "CMakeFiles/coreneuron-core.dir/io/phase1.cpp.o" "CMakeFiles/c | |
| oreneuron-core.dir/io/phase2.cpp.o" "CMakeFiles/coreneuron-core.di | |
| r/io/phase3.cpp.o" "CMakeFiles/coreneuron-core.dir/io/prcellstate. | |
| cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/nrnreport.cpp.o" | |
| "CMakeFiles/coreneuron-core.dir/io/reports/report_configuration_p | |
| arser.cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/report_eve | |
| nt.cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/report_handle | |
| r.cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/sonata_report_ | |
| handler.cpp.o" "CMakeFiles/coreneuron-core.dir/io/setup_fornetcon. | |
| cpp.o" "CMakeFiles/coreneuron-core.dir/mechanism/capac.cpp.o" "CMa | |
| keFiles/coreneuron-core.dir/mechanism/eion.cpp.o" "CMakeFiles/core | |
| neuron-core.dir/mechanism/mech_mapping.cpp.o" "CMakeFiles/coreneur | |
| on-core.dir/mechanism/patternstim.cpp.o" "CMakeFiles/coreneuron-co | |
| re.dir/mechanism/register_mech.cpp.o" "CMakeFiles/coreneuron-core. | |
| dir/mpi/core/nrnmpi_def_cinc.cpp.o" "CMakeFiles/coreneuron-core.di | |
| r/network/cvodestb.cpp.o" "CMakeFiles/coreneuron-core.dir/network/ | |
| multisend.cpp.o" "CMakeFiles/coreneuron-core.dir/network/multisend | |
| _setup.cpp.o" "CMakeFiles/coreneuron-core.dir/network/netcvode.cpp | |
| .o" "CMakeFiles/coreneuron-core.dir/network/netpar.cpp.o" "CMakeFi | |
| les/coreneuron-core.dir/network/partrans.cpp.o" "CMakeFiles/corene | |
| uron-core.dir/network/partrans_setup.cpp.o" "CMakeFiles/coreneuron | |
| -core.dir/network/tqueue.cpp.o" "CMakeFiles/coreneuron-core.dir/pe | |
| rmute/balance.cpp.o" "CMakeFiles/coreneuron-core.dir/permute/cello | |
| rder.cpp.o" "CMakeFiles/coreneuron-core.dir/permute/cellorder1.cpp | |
| .o" "CMakeFiles/coreneuron-core.dir/permute/cellorder2.cpp.o" "CMa | |
| keFiles/coreneuron-core.dir/permute/data_layout.cpp.o" "CMakeFiles | |
| /coreneuron-core.dir/permute/node_permute.cpp.o" "CMakeFiles/coren | |
| euron-core.dir/sim/fadvance_core.cpp.o" "CMakeFiles/coreneuron-cor | |
| e.dir/sim/fast_imem.cpp.o" "CMakeFiles/coreneuron-core.dir/sim/fin | |
| itialize.cpp.o" "CMakeFiles/coreneuron-core.dir/sim/multicore.cpp. | |
| o" "CMakeFiles/coreneuron-core.dir/sim/scopmath/abort.cpp.o" "CMak | |
| eFiles/coreneuron-core.dir/sim/scopmath/newton_thread.cpp.o" "CMak | |
| eFiles/coreneuron-core.dir/sim/solve_core.cpp.o" "CMakeFiles/coren | |
| euron-core.dir/sim/treeset_core.cpp.o" "CMakeFiles/coreneuron-core | |
| .dir/utils/ivocvect.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/l | |
| pt.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/memory.cpp.o" "CMa | |
| keFiles/coreneuron-core.dir/utils/memory_utils.cpp.o" "CMakeFiles/ | |
| coreneuron-core.dir/utils/nrn_stats.cpp.o" "CMakeFiles/coreneuron- | |
| core.dir/utils/nrnoc_aux.cpp.o" "CMakeFiles/coreneuron-core.dir/ut | |
| ils/nrntimeout.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/progre | |
| ssbar/progressbar.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/ran | |
| doms/nrnran123.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/string | |
| _utils.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/utils.cpp.o" " | |
| CMakeFiles/coreneuron-core.dir/utils/vrecord.cpp.o" "CMakeFiles/co | |
| reneuron-core.dir/mpi/core/resolve.cpp.o" "CMakeFiles/coreneuron-c | |
| ore.dir/__/__/coreneuron/config/config.cpp.o" CMakeFiles/corenrn_m | |
| pi.dir/mpi/lib/mpispike.cpp.o CMakeFiles/corenrn_mpi.dir/mpi/lib/n | |
| rnmpi.cpp.o | |
| 3054 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ranlib ../../lib/libco | |
| reneuron-core.a | |
| 3055 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P220112/J1337528/spack-build/spack-stage-neuron-git | |
| .fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-6crjgtubkhze24qb | |
| fmvr6354odzcidqv/spack-build-6crjgtu' | |
| 3056 [ 29%] Built target coreneuron-core | |
| 3057 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P220112/J1337528/spack-build/spack-stage-neuron-git | |
| .fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-6crjgtubkhze24qb | |
| fmvr6354odzcidqv/spack-build-6crjgtu' | |
| >> 3058 make: *** [Makefile:169: all] Error 2 | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337528/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-6crjgtubkhze24qbfmvr6354odzcidqv/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r1i5n2: task 0: Exited with exit code 1 | |
| section_end:1720018582:step_script [0Ksection_start:1720018582:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=241837 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1337528 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=241882 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1337528 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=241928 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1337528 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1720018583:upload_artifacts_on_failure [0Ksection_start:1720018583:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1720018584:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1720018158:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720018158:resolve_secrets [0Ksection_start:1720018158:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor168656378, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 220112, build ref , job ID 1337529 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1337529_PROD_P2160_CP9_C11 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2285451 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1337529_PROD_P2160_CP9_C11 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112 --ntasks=2 --jobid=2285451 --cpus-per-task=8 --mem=160G | |
| section_end:1720018162:prepare_executor [0Ksection_start:1720018162:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n2 via bbpv1.epfl.ch... | |
| section_end:1720018165:prepare_script [0Ksection_start:1720018165:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720018166:get_sources [0Ksection_start:1720018166:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=228187 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1720018171:restore_cache [0Ksection_start:1720018171:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1337523)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=228866 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1337523 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1720018172:download_artifacts [0Ksection_start:1720018172:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337529/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337529/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337529/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337529/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337529/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337529/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112/J1337529_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2285451/ccache | |
| Config file: /nvme/bbpcihpcproj12/2285451/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Wed Jul 3 16:49:38 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (89.56%) | |
| Files: 9825 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/ixoq64rwe3feip5rdbbtw2mc7jszelrr | |
| - ^caliper+cuda cuda_arch=70 | |
| Concretized | |
| -------------------------------- | |
| - 3bxbxzf neuron@git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| - vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake | |
| [^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake | |
| [^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] ixoq64r ^nmodl@git.7beaee9751e233f775a177c819d727abde7e4495=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/software/install_gcc-12.3.0-skylake/nmodl-git.7beaee9751e233f775a177c819d727abde7e4495_develop-ixoq64 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp | |
| ==> Installing neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop-3bxbxzf46y2tw3s6wfbl3wegppzwa4mh [55/55] | |
| ==> No binary for neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop-3bxbxzf46y2tw3s6wfbl3wegppzwa4mh found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 2: | |
| 'make' '-j8' | |
| 33 errors found in build log: | |
| 2896 ^ | |
| 2897 | |
| 2898 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM | |
| ath.h", line 1443: warning: integer conversion resulted in a chang | |
| e of sign [integer_sign_change] | |
| 2899 Packet8bf sign_mask = _mm_set1_epi16(static_cast<numext::uint1 | |
| 6_t>(0x8000)); | |
| 2900 ^ | |
| 2901 | |
| >> 2902 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 617: error: | |
| explicit type is missing ("int" assumed) | |
| 2903 inline nb::object obj_get_segment(nb::object py_obj) { | |
| 2904 ^ | |
| 2905 | |
| >> 2906 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 617: error: | |
| expected a ";" | |
| 2907 inline nb::object obj_get_segment(nb::object py_obj) { | |
| 2908 ^ | |
| 2909 | |
| 2910 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 758: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2911 return NULL; | |
| 2912 ^ | |
| 2913 | |
| 2914 Remark: individual warnings can be suppressed with "--diag_suppres | |
| s <warning-name>" | |
| 2915 | |
| >> 2916 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 759: error: | |
| expected a declaration | |
| 2917 } | |
| 2918 ^ | |
| 2919 | |
| >> 2920 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 761: error: | |
| expected a declaration | |
| 2921 } else { | |
| 2922 ^ | |
| 2923 | |
| 2924 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 765: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2925 Py_RETURN_NONE; | |
| 2926 ^ | |
| 2927 | |
| >> 2928 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 766: error: | |
| expected a declaration | |
| 2929 } | |
| 2930 ^ | |
| 2931 | |
| 2932 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 829: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2933 return NULL; | |
| 2934 ^ | |
| 2935 | |
| >> 2936 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 830: error: | |
| expected a declaration | |
| 2937 } | |
| 2938 ^ | |
| 2939 | |
| >> 2940 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 833: error: | |
| expected a declaration | |
| 2941 } else { | |
| 2942 ^ | |
| 2943 | |
| 2944 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 842: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2945 Py_RETURN_FALSE; | |
| 2946 ^ | |
| 2947 | |
| >> 2948 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 843: error: | |
| expected a declaration | |
| 2949 } | |
| 2950 ^ | |
| 2951 | |
| 2952 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 987: warnin | |
| g: parsing restarts here after previous syntax error [end_of_flush | |
| ] | |
| 2953 static PyObject* nrnpy_psection; | |
| 2954 ^ | |
| 2955 | |
| >> 2956 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 997: error: | |
| identifier "nrnpy_psection" is undefined | |
| 2957 if (nrnpy_psection) { | |
| 2958 ^ | |
| 2959 | |
| >> 2960 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 1012: error | |
| : identifier "nrnpy_psection" is undefined | |
| 2961 if (nrnpy_psection) { | |
| 2962 ^ | |
| 2963 | |
| >> 2964 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2737: error | |
| : identifier "NPySecObj_name_safe" is undefined | |
| 2965 (PyCFunction) NPySecObj_name_safe, | |
| 2966 ^ | |
| 2967 | |
| >> 2968 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2782: error | |
| : identifier "hoc_internal_name_safe" is undefined | |
| 2969 (PyCFunction) hoc_internal_name_safe, | |
| 2970 ^ | |
| 2971 | |
| >> 2972 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2816: error | |
| : identifier "NPySecObj_n3d_safe" is undefined | |
| 2973 {"n3d", (PyCFunction) NPySecObj_n3d_safe, METH_NOARGS, "Retu | |
| rns the number of 3D points."}, | |
| 2974 ^ | |
| 2975 | |
| >> 2976 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2818: error | |
| : identifier "NPySecObj_x3d_safe" is undefined | |
| 2977 (PyCFunction) NPySecObj_x3d_safe, | |
| 2978 ^ | |
| 2979 | |
| >> 2980 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2822: error | |
| : identifier "NPySecObj_y3d_safe" is undefined | |
| 2981 (PyCFunction) NPySecObj_y3d_safe, | |
| 2982 ^ | |
| 2983 | |
| >> 2984 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2826: error | |
| : identifier "NPySecObj_z3d_safe" is undefined | |
| 2985 (PyCFunction) NPySecObj_z3d_safe, | |
| 2986 ^ | |
| 2987 | |
| >> 2988 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2830: error | |
| : identifier "NPySecObj_arc3d_safe" is undefined | |
| 2989 (PyCFunction) NPySecObj_arc3d_safe, | |
| 2990 ^ | |
| 2991 | |
| >> 2992 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2834: error | |
| : identifier "NPySecObj_diam3d_safe" is undefined | |
| 2993 (PyCFunction) NPySecObj_diam3d_safe, | |
| 2994 ^ | |
| 2995 | |
| >> 2996 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2838: error | |
| : identifier "NPySecObj_spine3d_safe" is undefined | |
| 2997 (PyCFunction) NPySecObj_spine3d_safe, | |
| 2998 ^ | |
| 2999 | |
| >> 3000 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2841: error | |
| : identifier "NPySecObj_pt3dremove" is undefined | |
| 3001 {"pt3dremove", (PyCFunction) NPySecObj_pt3dremove, METH_VARA | |
| RGS, "Removes the ith 3D point."}, | |
| 3002 ^ | |
| 3003 | |
| >> 3004 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2843: error | |
| : identifier "NPySecObj_pt3dclear_safe" is undefined | |
| 3005 (PyCFunction) NPySecObj_pt3dclear_safe, | |
| 3006 ^ | |
| 3007 | |
| >> 3008 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2847: error | |
| : identifier "NPySecObj_pt3dinsert_safe" is undefined | |
| 3009 (PyCFunction) NPySecObj_pt3dinsert_safe, | |
| 3010 ^ | |
| 3011 | |
| >> 3012 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2852: error | |
| : identifier "NPySecObj_pt3dchange_safe" is undefined | |
| 3013 (PyCFunction) NPySecObj_pt3dchange_safe, | |
| 3014 ^ | |
| 3015 | |
| >> 3016 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2857: error | |
| : identifier "NPySecObj_pt3dadd_safe" is undefined | |
| 3017 (PyCFunction) NPySecObj_pt3dadd_safe, | |
| 3018 ^ | |
| 3019 | |
| >> 3020 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 2862: error | |
| : identifier "NPySecObj_pt3dstyle_safe" is undefined | |
| 3021 (PyCFunction) NPySecObj_pt3dstyle_safe, | |
| 3022 ^ | |
| 3023 | |
| >> 3024 "../../../spack-src/src/nrnpython/nrnpy_nrn.h", line 3: error: ide | |
| ntifier "pysec_repr_safe" is undefined | |
| 3025 {Py_tp_repr, (void*) pysec_repr_safe}, | |
| 3026 ^ | |
| 3027 | |
| >> 3028 "../../../spack-src/src/nrnpython/nrnpy_nrn.h", line 61: error: id | |
| entifier "pyseg_repr_safe" is undefined | |
| 3029 {Py_tp_repr, (void*) pyseg_repr_safe}, | |
| 3030 ^ | |
| 3031 | |
| >> 3032 "../../../spack-src/src/nrnpython/nrnpy_nrn.h", line 106: error: i | |
| dentifier "NPyMechObj_init_safe" is undefined | |
| 3033 {Py_tp_init, (void*) NPyMechObj_init_safe}, | |
| 3034 ^ | |
| 3035 | |
| >> 3036 "../../../spack-src/src/nrnpython/nrnpy_nrn.h", line 153: error: i | |
| dentifier "NPyRangeVar_init_safe" is undefined | |
| 3037 {Py_tp_init, (void*) NPyRangeVar_init_safe}, | |
| 3038 ^ | |
| 3039 | |
| >> 3040 "../../../spack-src/src/nrnpython/nrnpy_nrn.cpp", line 3075: error | |
| : identifier "o2loc2" is undefined | |
| 3041 nrnpy_o2loc2_p_ = o2loc2; | |
| 3042 ^ | |
| 3043 | |
| 3044 30 errors detected in the compilation of "../../../spack-src/src/n | |
| rnpython/nrnpy_nrn.cpp". | |
| >> 3045 make[2]: *** [src/nrnpython/CMakeFiles/nrnpython.dir/build.make:10 | |
| 7: src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_nrn.cpp.o] Error 2 | |
| 3046 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P220112/J1337529/spack-build/spack-stage-neuron-git | |
| .fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-3bxbxzf46y2tw3s6 | |
| wfbl3wegppzwa4mh/spack-build-3bxbxzf' | |
| >> 3047 make[1]: *** [CMakeFiles/Makefile2:2729: src/nrnpython/CMakeFiles/ | |
| nrnpython.dir/all] Error 2 | |
| 3048 make[1]: *** Waiting for unfinished jobs.... | |
| 3049 [ 29%] Linking CXX static library ../../lib/libcoreneuron-core.a | |
| 3050 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337529/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-3bxbxzf46y2tw3s6wfbl3wegppzwa4mh/spack-bu | |
| ild-3bxbxzf/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyo | |
| es/bin/cmake -P CMakeFiles/coreneuron-core.dir/cmake_clean_target. | |
| cmake | |
| 3051 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1 | |
| 337529/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53e | |
| a3bdbad130bbba8f_develop-3bxbxzf46y2tw3s6wfbl3wegppzwa4mh/spack-bu | |
| ild-3bxbxzf/src/coreneuron && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyo | |
| es/bin/cmake -E cmake_link_script CMakeFiles/coreneuron-core.dir/l | |
| ink.txt --verbose=1 | |
| 3052 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ar qc ../../lib/libcor | |
| eneuron-core.a "CMakeFiles/coreneuron-core.dir/apps/corenrn_parame | |
| ters.cpp.o" "CMakeFiles/coreneuron-core.dir/apps/main1.cpp.o" "CMa | |
| keFiles/coreneuron-core.dir/gpu/nrn_acc_manager.cpp.o" "CMakeFiles | |
| /coreneuron-core.dir/io/core2nrn_data_return.cpp.o" "CMakeFiles/co | |
| reneuron-core.dir/io/global_vars.cpp.o" "CMakeFiles/coreneuron-cor | |
| e.dir/io/lfp.cpp.o" "CMakeFiles/coreneuron-core.dir/io/mech_report | |
| .cpp.o" "CMakeFiles/coreneuron-core.dir/io/mem_layout_util.cpp.o" | |
| "CMakeFiles/coreneuron-core.dir/io/mk_mech.cpp.o" "CMakeFiles/core | |
| neuron-core.dir/io/nrn2core_data_init.cpp.o" "CMakeFiles/coreneuro | |
| n-core.dir/io/nrn_checkpoint.cpp.o" "CMakeFiles/coreneuron-core.di | |
| r/io/nrn_filehandler.cpp.o" "CMakeFiles/coreneuron-core.dir/io/nrn | |
| _setup.cpp.o" "CMakeFiles/coreneuron-core.dir/io/output_spikes.cpp | |
| .o" "CMakeFiles/coreneuron-core.dir/io/phase1.cpp.o" "CMakeFiles/c | |
| oreneuron-core.dir/io/phase2.cpp.o" "CMakeFiles/coreneuron-core.di | |
| r/io/phase3.cpp.o" "CMakeFiles/coreneuron-core.dir/io/prcellstate. | |
| cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/nrnreport.cpp.o" | |
| "CMakeFiles/coreneuron-core.dir/io/reports/report_configuration_p | |
| arser.cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/report_eve | |
| nt.cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/report_handle | |
| r.cpp.o" "CMakeFiles/coreneuron-core.dir/io/reports/sonata_report_ | |
| handler.cpp.o" "CMakeFiles/coreneuron-core.dir/io/setup_fornetcon. | |
| cpp.o" "CMakeFiles/coreneuron-core.dir/mechanism/capac.cpp.o" "CMa | |
| keFiles/coreneuron-core.dir/mechanism/eion.cpp.o" "CMakeFiles/core | |
| neuron-core.dir/mechanism/mech_mapping.cpp.o" "CMakeFiles/coreneur | |
| on-core.dir/mechanism/patternstim.cpp.o" "CMakeFiles/coreneuron-co | |
| re.dir/mechanism/register_mech.cpp.o" "CMakeFiles/coreneuron-core. | |
| dir/mpi/core/nrnmpi_def_cinc.cpp.o" "CMakeFiles/coreneuron-core.di | |
| r/network/cvodestb.cpp.o" "CMakeFiles/coreneuron-core.dir/network/ | |
| multisend.cpp.o" "CMakeFiles/coreneuron-core.dir/network/multisend | |
| _setup.cpp.o" "CMakeFiles/coreneuron-core.dir/network/netcvode.cpp | |
| .o" "CMakeFiles/coreneuron-core.dir/network/netpar.cpp.o" "CMakeFi | |
| les/coreneuron-core.dir/network/partrans.cpp.o" "CMakeFiles/corene | |
| uron-core.dir/network/partrans_setup.cpp.o" "CMakeFiles/coreneuron | |
| -core.dir/network/tqueue.cpp.o" "CMakeFiles/coreneuron-core.dir/pe | |
| rmute/balance.cpp.o" "CMakeFiles/coreneuron-core.dir/permute/cello | |
| rder.cpp.o" "CMakeFiles/coreneuron-core.dir/permute/cellorder1.cpp | |
| .o" "CMakeFiles/coreneuron-core.dir/permute/cellorder2.cpp.o" "CMa | |
| keFiles/coreneuron-core.dir/permute/data_layout.cpp.o" "CMakeFiles | |
| /coreneuron-core.dir/permute/node_permute.cpp.o" "CMakeFiles/coren | |
| euron-core.dir/sim/fadvance_core.cpp.o" "CMakeFiles/coreneuron-cor | |
| e.dir/sim/fast_imem.cpp.o" "CMakeFiles/coreneuron-core.dir/sim/fin | |
| itialize.cpp.o" "CMakeFiles/coreneuron-core.dir/sim/multicore.cpp. | |
| o" "CMakeFiles/coreneuron-core.dir/sim/scopmath/abort.cpp.o" "CMak | |
| eFiles/coreneuron-core.dir/sim/scopmath/newton_thread.cpp.o" "CMak | |
| eFiles/coreneuron-core.dir/sim/solve_core.cpp.o" "CMakeFiles/coren | |
| euron-core.dir/sim/treeset_core.cpp.o" "CMakeFiles/coreneuron-core | |
| .dir/utils/ivocvect.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/l | |
| pt.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/memory.cpp.o" "CMa | |
| keFiles/coreneuron-core.dir/utils/memory_utils.cpp.o" "CMakeFiles/ | |
| coreneuron-core.dir/utils/nrn_stats.cpp.o" "CMakeFiles/coreneuron- | |
| core.dir/utils/nrnoc_aux.cpp.o" "CMakeFiles/coreneuron-core.dir/ut | |
| ils/nrntimeout.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/progre | |
| ssbar/progressbar.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/ran | |
| doms/nrnran123.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/string | |
| _utils.cpp.o" "CMakeFiles/coreneuron-core.dir/utils/utils.cpp.o" " | |
| CMakeFiles/coreneuron-core.dir/utils/vrecord.cpp.o" "CMakeFiles/co | |
| reneuron-core.dir/mpi/core/resolve.cpp.o" "CMakeFiles/coreneuron-c | |
| ore.dir/__/__/coreneuron/config/config.cpp.o" CMakeFiles/corenrn_m | |
| pi.dir/mpi/lib/mpispike.cpp.o CMakeFiles/corenrn_mpi.dir/mpi/lib/n | |
| rnmpi.cpp.o | |
| 3053 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ranlib ../../lib/libco | |
| reneuron-core.a | |
| 3054 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P220112/J1337529/spack-build/spack-stage-neuron-git | |
| .fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-3bxbxzf46y2tw3s6 | |
| wfbl3wegppzwa4mh/spack-build-3bxbxzf' | |
| 3055 [ 29%] Built target coreneuron-core | |
| 3056 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P220112/J1337529/spack-build/spack-stage-neuron-git | |
| .fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-3bxbxzf46y2tw3s6 | |
| wfbl3wegppzwa4mh/spack-build-3bxbxzf' | |
| >> 3057 make: *** [Makefile:169: all] Error 2 | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337529/spack-build/spack-stage-neuron-git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f_develop-3bxbxzf46y2tw3s6wfbl3wegppzwa4mh/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r1i5n2: task 0: Exited with exit code 1 | |
| section_end:1720018624:step_script [0Ksection_start:1720018624:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=242945 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1337529 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=242986 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1337529 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=243031 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1337529 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1720018626:upload_artifacts_on_failure [0Ksection_start:1720018626:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1720018626:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1720017800:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720017800:resolve_secrets [0Ksection_start:1720017800:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3087372130, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 220112, build ref , job ID 1337523 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1337523_PROD_P2160_CP0_C0 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2285441 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1337523_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112 --ntasks=2 --jobid=2285441 --cpus-per-task=8 --mem=160G | |
| section_end:1720017802:prepare_executor [0Ksection_start:1720017802:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n21 via bbpv1.epfl.ch... | |
| section_end:1720017805:prepare_script [0Ksection_start:1720017805:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720017805:get_sources [0Ksection_start:1720017805:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=91245 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1720017810:restore_cache [0Ksection_start:1720017810:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for spack_setup (1337521)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=91387 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1337521 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1720017811:download_artifacts [0Ksection_start:1720017811:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337523/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337523/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337523/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337523/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337523/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337523/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112/J1337523_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2285441/ccache | |
| Config file: /nvme/bbpcihpcproj12/2285441/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Wed Jul 3 16:43:37 2024 | |
| Local storage: | |
| Cache size (GB): 0.44 / 0.51 (86.46%) | |
| Files: 5438 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - ixoq64r nmodl@git.7beaee9751e233f775a177c819d727abde7e4495=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112, but it is owned by 0 | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| ==> Installing nmodl-git.7beaee9751e233f775a177c819d727abde7e4495=develop-ixoq64rwe3feip5rdbbtw2mc7jszelrr [19/19] | |
| ==> No binary for nmodl-git.7beaee9751e233f775a177c819d727abde7e4495=develop-ixoq64rwe3feip5rdbbtw2mc7jszelrr found: installing from source | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-git.7beaee9751e233f775a177c819d727abde7e4495=develop-ixoq64rwe3feip5rdbbtw2mc7jszelrr | |
| Stage: 58.24s. Cmake: 2.59s. Build: 1m 32.28s. Install: 1.40s. Post-install: 0.35s. Total: 2m 35.07s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/software/install_gcc-12.3.0-skylake/nmodl-git.7beaee9751e233f775a177c819d727abde7e4495_develop-ixoq64 | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be ixoq64rwe3feip5rdbbtw2mc7jszelrr | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2285441/ccache | |
| Config file: /nvme/bbpcihpcproj12/2285441/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Wed Jul 3 16:48:42 2024 | |
| Cacheable calls: 138 / 165 (83.64%) | |
| Hits: 136 / 138 (98.55%) | |
| Direct: 28 / 136 (20.59%) | |
| Preprocessed: 108 / 136 (79.41%) | |
| Misses: 2 / 138 ( 1.45%) | |
| Uncacheable calls: 27 / 165 (16.36%) | |
| Called for linking: 24 / 27 (88.89%) | |
| No input file: 3 / 27 (11.11%) | |
| Successful lookups: | |
| Direct: 28 / 138 (20.29%) | |
| Preprocessed: 108 / 110 (98.18%) | |
| Local storage: | |
| Cache size (GB): 0.44 / 0.51 (86.46%) | |
| Files: 5442 | |
| Hits: 136 / 138 (98.55%) | |
| Misses: 2 / 138 ( 1.45%) | |
| Reads: 276 | |
| Writes: 4 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1720018124:step_script [0Ksection_start:1720018124:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=93951 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1720018150:archive_cache [0Ksection_start:1720018150:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=94095 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1337523 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=94134 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1337523 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=94175 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1337523 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1720018151:upload_artifacts_on_success [0Ksection_start:1720018151:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1720018152:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ! |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m | |
| [0K on macos-arm64 vGzz-bdp[0;m | |
| section_start:1720017482:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720017482:resolve_secrets [0Ksection_start:1720017482:prepare_executor [0K[0K[36;1mPreparing the "shell" executor[0;m[0;m | |
| [0KUsing Shell executor...[0;m | |
| section_end:1720017482:prepare_executor [0Ksection_start:1720017482:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on bbpmacglr01.bbp.epfl.ch... | |
| section_end:1720017483:prepare_script [0Ksection_start:1720017483:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mFetching changes with git depth set to 20...[0;m | |
| Initialized empty Git repository in /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/.git/ | |
| [32;1mCreated fresh repository.[0;m | |
| [32;1mChecking out fd8a070a as enh/leite/py-segment-nanobind...[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720017484:get_sources [0Ksection_start:1720017484:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-enh/leite/py-segment-nanobind-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=63734 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
| No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1720017485:restore_cache [0Ksection_start:1720017485:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ real_python=$(python3 resolve_shim.py)[0;m | |
| [32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m | |
| python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python | |
| [32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m | |
| [32;1m$ venv/bin/python3 -m ensurepip --upgrade --default-pip[0;m | |
| Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpoi52mjtn | |
| Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpoi52mjtn/setuptools-68.2.2-py3-none-any.whl | |
| Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpoi52mjtn/pip-23.3.1-py3-none-any.whl | |
| Installing collected packages: setuptools, pip | |
| Successfully installed pip-23.3.1 setuptools-68.2.2 | |
| [32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m | |
| Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl' | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl'... | |
| From https://github.com/BlueBrain/nmodl | |
| * branch c5ecfea39cbd53ffcc248b1dcf732c1e0ae1ffc4 -> FETCH_HEAD | |
| Submodule path 'external/nmodl': checked out 'c5ecfea39cbd53ffcc248b1dcf732c1e0ae1ffc4' | |
| Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions' | |
| Submodule 'ext/backward' (https://github.com/bombela/backward-cpp.git) registered for path 'external/nmodl/ext/backward' | |
| Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2' | |
| Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11' | |
| Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen' | |
| Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt' | |
| Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json' | |
| Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11' | |
| Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog' | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/ext/backward'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/ext/catch2'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/ext/cli11'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/ext/eigen'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/ext/fmt'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/ext/json'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/ext/pybind11'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/ext/spdlog'... | |
| From https://github.com/BlueBrain/hpc-coding-conventions | |
| * branch f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD | |
| Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d' | |
| Submodule path 'external/nmodl/ext/backward': checked out '51f0700452cf71c57d43c2d028277b24cde32502' | |
| From https://github.com/catchorg/Catch2 | |
| * branch 8ac8190e494a381072c89f5e161b92a08d98b37b -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b' | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch f4d0731cebb123ff0ace712c099dffbcd2c58e5a -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/cli11': checked out 'f4d0731cebb123ff0ace712c099dffbcd2c58e5a' | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
| From https://github.com/fmtlib/fmt | |
| * branch e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281' | |
| From https://github.com/nlohmann/json | |
| * branch 9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/json': checked out '9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03' | |
| From https://github.com/pybind/pybind11 | |
| * branch 3e9dfa2866941655c56877882565e7577de6fc7b -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/pybind11': checked out '3e9dfa2866941655c56877882565e7577de6fc7b' | |
| From https://github.com/gabime/spdlog | |
| * branch 7c02e204c92545f869e2f04edaab1f19fe8b19fd -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/spdlog': checked out '7c02e204c92545f869e2f04edaab1f19fe8b19fd' | |
| [32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m | |
| Ignoring importlib-metadata: markers 'python_version < "3.9"' don't match your environment | |
| Ignoring importlib-resources: markers 'python_version < "3.9"' don't match your environment | |
| Collecting scikit-build-core (from -r external/nmodl/requirements.txt (line 2)) | |
| Using cached scikit_build_core-0.9.8-py3-none-any.whl.metadata (19 kB) | |
| Collecting setuptools-scm>=8.0 (from -r external/nmodl/requirements.txt (line 3)) | |
| Using cached setuptools_scm-8.1.0-py3-none-any.whl.metadata (6.6 kB) | |
| Collecting Jinja2>=2.9.3 (from -r external/nmodl/requirements.txt (line 4)) | |
| Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting PyYAML>=3.13 (from -r external/nmodl/requirements.txt (line 5)) | |
| Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB) | |
| Collecting find_libpython (from -r external/nmodl/requirements.txt (line 7)) | |
| Using cached find_libpython-0.4.0-py3-none-any.whl.metadata (2.8 kB) | |
| Collecting sympy>=1.3 (from -r external/nmodl/requirements.txt (line 8)) | |
| Using cached sympy-1.12.1-py3-none-any.whl.metadata (12 kB) | |
| Collecting pytest<=8.1.1 (from -r external/nmodl/requirements.txt (line 12)) | |
| Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB) | |
| Collecting pytest-cov (from -r external/nmodl/requirements.txt (line 13)) | |
| Using cached pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB) | |
| Collecting numpy (from -r external/nmodl/requirements.txt (line 14)) | |
| Using cached numpy-2.0.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (114 kB) | |
| Collecting jupyter-client (from -r external/nmodl/requirements.txt (line 16)) | |
| Using cached jupyter_client-8.6.2-py3-none-any.whl.metadata (8.3 kB) | |
| Collecting jupyter (from -r external/nmodl/requirements.txt (line 17)) | |
| Using cached jupyter-1.0.0-py2.py3-none-any.whl.metadata (995 bytes) | |
| Collecting myst_parser<2.0.0 (from -r external/nmodl/requirements.txt (line 18)) | |
| Using cached myst_parser-1.0.0-py3-none-any.whl.metadata (5.5 kB) | |
| Collecting mistune<3 (from -r external/nmodl/requirements.txt (line 19)) | |
| Using cached mistune-2.0.5-py2.py3-none-any.whl.metadata (1.5 kB) | |
| Collecting nbconvert (from -r external/nmodl/requirements.txt (line 20)) | |
| Using cached nbconvert-7.16.4-py3-none-any.whl.metadata (8.5 kB) | |
| Collecting nbsphinx>=0.3.2 (from -r external/nmodl/requirements.txt (line 21)) | |
| Using cached nbsphinx-0.9.4-py3-none-any.whl.metadata (2.1 kB) | |
| Collecting sphinxcontrib-applehelp<1.0.3 (from -r external/nmodl/requirements.txt (line 22)) | |
| Using cached sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl.metadata (1.4 kB) | |
| Collecting sphinxcontrib-htmlhelp<=2.0.0 (from -r external/nmodl/requirements.txt (line 23)) | |
| Using cached sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl.metadata (1.6 kB) | |
| Collecting sphinx<6 (from -r external/nmodl/requirements.txt (line 24)) | |
| Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB) | |
| Collecting sphinx-rtd-theme (from -r external/nmodl/requirements.txt (line 25)) | |
| Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl.metadata (4.4 kB) | |
| Collecting docutils<0.20 (from -r external/nmodl/requirements.txt (line 26)) | |
| Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB) | |
| Collecting exceptiongroup>=1.0 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached exceptiongroup-1.2.1-py3-none-any.whl.metadata (6.6 kB) | |
| Collecting packaging>=21.3 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) | |
| Collecting pathspec>=0.10.1 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached pathspec-0.12.1-py3-none-any.whl.metadata (21 kB) | |
| Collecting tomli>=1.2.2 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB) | |
| Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from setuptools-scm>=8.0->-r external/nmodl/requirements.txt (line 3)) (68.2.2) | |
| Collecting MarkupSafe>=2.0 (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 4)) | |
| Using cached MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB) | |
| Collecting mpmath<1.4.0,>=1.1.0 (from sympy>=1.3->-r external/nmodl/requirements.txt (line 8)) | |
| Using cached mpmath-1.3.0-py3-none-any.whl.metadata (8.6 kB) | |
| Collecting iniconfig (from pytest<=8.1.1->-r external/nmodl/requirements.txt (line 12)) | |
| Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting pluggy<2.0,>=1.4 (from pytest<=8.1.1->-r external/nmodl/requirements.txt (line 12)) | |
| Using cached pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB) | |
| Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov->-r external/nmodl/requirements.txt (line 13)) | |
| Using cached coverage-7.5.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (8.2 kB) | |
| Collecting jupyter-core!=5.0.*,>=4.12 (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) | |
| Using cached jupyter_core-5.7.2-py3-none-any.whl.metadata (3.4 kB) | |
| Collecting python-dateutil>=2.8.2 (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) | |
| Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) | |
| Collecting pyzmq>=23.0 (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) | |
| Using cached pyzmq-26.0.3-cp310-cp310-macosx_10_15_universal2.whl.metadata (6.1 kB) | |
| Collecting tornado>=6.2 (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) | |
| Using cached tornado-6.4.1-cp38-abi3-macosx_10_9_universal2.whl.metadata (2.5 kB) | |
| Collecting traitlets>=5.3 (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) | |
| Using cached traitlets-5.14.3-py3-none-any.whl.metadata (10 kB) | |
| Collecting notebook (from jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached notebook-7.2.1-py3-none-any.whl.metadata (10 kB) | |
| Collecting qtconsole (from jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached qtconsole-5.5.2-py3-none-any.whl.metadata (5.1 kB) | |
| Collecting jupyter-console (from jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached jupyter_console-6.6.3-py3-none-any.whl.metadata (5.8 kB) | |
| Collecting ipykernel (from jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached ipykernel-6.29.5-py3-none-any.whl.metadata (6.3 kB) | |
| Collecting ipywidgets (from jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached ipywidgets-8.1.3-py3-none-any.whl.metadata (2.4 kB) | |
| Collecting markdown-it-py<3.0.0,>=1.0.0 (from myst_parser<2.0.0->-r external/nmodl/requirements.txt (line 18)) | |
| Using cached markdown_it_py-2.2.0-py3-none-any.whl.metadata (6.8 kB) | |
| Collecting mdit-py-plugins~=0.3.4 (from myst_parser<2.0.0->-r external/nmodl/requirements.txt (line 18)) | |
| Using cached mdit_py_plugins-0.3.5-py3-none-any.whl.metadata (2.8 kB) | |
| Collecting beautifulsoup4 (from nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached beautifulsoup4-4.12.3-py3-none-any.whl.metadata (3.8 kB) | |
| Collecting bleach!=5.0.0 (from nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached bleach-6.1.0-py3-none-any.whl.metadata (30 kB) | |
| Collecting defusedxml (from nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached defusedxml-0.7.1-py2.py3-none-any.whl.metadata (32 kB) | |
| Collecting jupyterlab-pygments (from nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached jupyterlab_pygments-0.3.0-py3-none-any.whl.metadata (4.4 kB) | |
| Collecting nbclient>=0.5.0 (from nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached nbclient-0.10.0-py3-none-any.whl.metadata (7.8 kB) | |
| Collecting nbformat>=5.7 (from nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached nbformat-5.10.4-py3-none-any.whl.metadata (3.6 kB) | |
| Collecting pandocfilters>=1.4.1 (from nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached pandocfilters-1.5.1-py2.py3-none-any.whl.metadata (9.0 kB) | |
| Collecting pygments>=2.4.1 (from nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB) | |
| Collecting tinycss2 (from nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached tinycss2-1.3.0-py3-none-any.whl.metadata (3.0 kB) | |
| Collecting sphinxcontrib-devhelp (from sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl.metadata (2.3 kB) | |
| Collecting sphinxcontrib-jsmath (from sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB) | |
| Collecting sphinxcontrib-serializinghtml>=1.1.5 (from sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl.metadata (2.4 kB) | |
| Collecting sphinxcontrib-qthelp (from sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached sphinxcontrib_qthelp-1.0.7-py3-none-any.whl.metadata (2.2 kB) | |
| Collecting snowballstemmer>=2.0 (from sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB) | |
| Collecting babel>=2.9 (from sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached Babel-2.15.0-py3-none-any.whl.metadata (1.5 kB) | |
| Collecting alabaster<0.8,>=0.7 (from sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached alabaster-0.7.16-py3-none-any.whl.metadata (2.9 kB) | |
| Collecting imagesize>=1.3 (from sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB) | |
| Collecting requests>=2.5.0 (from sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) | |
| Collecting sphinxcontrib-jquery<5,>=4 (from sphinx-rtd-theme->-r external/nmodl/requirements.txt (line 25)) | |
| Using cached sphinxcontrib_jquery-4.1-py2.py3-none-any.whl.metadata (2.6 kB) | |
| Collecting six>=1.9.0 (from bleach!=5.0.0->nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) | |
| Collecting webencodings (from bleach!=5.0.0->nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached webencodings-0.5.1-py2.py3-none-any.whl.metadata (2.1 kB) | |
| Collecting platformdirs>=2.5 (from jupyter-core!=5.0.*,>=4.12->jupyter-client->-r external/nmodl/requirements.txt (line 16)) | |
| Using cached platformdirs-4.2.2-py3-none-any.whl.metadata (11 kB) | |
| Collecting mdurl~=0.1 (from markdown-it-py<3.0.0,>=1.0.0->myst_parser<2.0.0->-r external/nmodl/requirements.txt (line 18)) | |
| Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) | |
| Collecting fastjsonschema>=2.15 (from nbformat>=5.7->nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached fastjsonschema-2.20.0-py3-none-any.whl.metadata (2.1 kB) | |
| Collecting jsonschema>=2.6 (from nbformat>=5.7->nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached jsonschema-4.22.0-py3-none-any.whl.metadata (8.2 kB) | |
| Collecting charset-normalizer<4,>=2 (from requests>=2.5.0->sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached charset_normalizer-3.3.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (33 kB) | |
| Collecting idna<4,>=2.5 (from requests>=2.5.0->sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB) | |
| Collecting urllib3<3,>=1.21.1 (from requests>=2.5.0->sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached urllib3-2.2.2-py3-none-any.whl.metadata (6.4 kB) | |
| Collecting certifi>=2017.4.17 (from requests>=2.5.0->sphinx<6->-r external/nmodl/requirements.txt (line 24)) | |
| Using cached certifi-2024.6.2-py3-none-any.whl.metadata (2.2 kB) | |
| Collecting soupsieve>1.2 (from beautifulsoup4->nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached soupsieve-2.5-py3-none-any.whl.metadata (4.7 kB) | |
| Collecting appnope (from ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached appnope-0.1.4-py2.py3-none-any.whl.metadata (908 bytes) | |
| Collecting comm>=0.1.1 (from ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached comm-0.2.2-py3-none-any.whl.metadata (3.7 kB) | |
| Collecting debugpy>=1.6.5 (from ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached debugpy-1.8.2-py2.py3-none-any.whl.metadata (1.1 kB) | |
| Collecting ipython>=7.23.1 (from ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached ipython-8.26.0-py3-none-any.whl.metadata (5.0 kB) | |
| Collecting matplotlib-inline>=0.1 (from ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached matplotlib_inline-0.1.7-py3-none-any.whl.metadata (3.9 kB) | |
| Collecting nest-asyncio (from ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached nest_asyncio-1.6.0-py3-none-any.whl.metadata (2.8 kB) | |
| Collecting psutil (from ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached psutil-6.0.0-cp38-abi3-macosx_11_0_arm64.whl.metadata (21 kB) | |
| Collecting widgetsnbextension~=4.0.11 (from ipywidgets->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached widgetsnbextension-4.0.11-py3-none-any.whl.metadata (1.6 kB) | |
| Collecting jupyterlab-widgets~=3.0.11 (from ipywidgets->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached jupyterlab_widgets-3.0.11-py3-none-any.whl.metadata (4.1 kB) | |
| Collecting prompt-toolkit>=3.0.30 (from jupyter-console->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached prompt_toolkit-3.0.47-py3-none-any.whl.metadata (6.4 kB) | |
| Collecting jupyter-server<3,>=2.4.0 (from notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached jupyter_server-2.14.1-py3-none-any.whl.metadata (8.4 kB) | |
| Collecting jupyterlab-server<3,>=2.27.1 (from notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached jupyterlab_server-2.27.2-py3-none-any.whl.metadata (5.9 kB) | |
| Collecting jupyterlab<4.3,>=4.2.0 (from notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached jupyterlab-4.2.3-py3-none-any.whl.metadata (16 kB) | |
| Collecting notebook-shim<0.3,>=0.2 (from notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached notebook_shim-0.2.4-py3-none-any.whl.metadata (4.0 kB) | |
| Collecting qtpy>=2.4.0 (from qtconsole->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached QtPy-2.4.1-py3-none-any.whl.metadata (12 kB) | |
| Collecting decorator (from ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached decorator-5.1.1-py3-none-any.whl.metadata (4.0 kB) | |
| Collecting jedi>=0.16 (from ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached jedi-0.19.1-py2.py3-none-any.whl.metadata (22 kB) | |
| Collecting stack-data (from ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached stack_data-0.6.3-py3-none-any.whl.metadata (18 kB) | |
| Collecting typing-extensions>=4.6 (from ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) | |
| Collecting pexpect>4.3 (from ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB) | |
| Collecting attrs>=22.2.0 (from jsonschema>=2.6->nbformat>=5.7->nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached attrs-23.2.0-py3-none-any.whl.metadata (9.5 kB) | |
| Collecting jsonschema-specifications>=2023.03.6 (from jsonschema>=2.6->nbformat>=5.7->nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached jsonschema_specifications-2023.12.1-py3-none-any.whl.metadata (3.0 kB) | |
| Collecting referencing>=0.28.4 (from jsonschema>=2.6->nbformat>=5.7->nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached referencing-0.35.1-py3-none-any.whl.metadata (2.8 kB) | |
| Collecting rpds-py>=0.7.1 (from jsonschema>=2.6->nbformat>=5.7->nbconvert->-r external/nmodl/requirements.txt (line 20)) | |
| Using cached rpds_py-0.18.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (4.1 kB) | |
| Collecting anyio>=3.1.0 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached anyio-4.4.0-py3-none-any.whl.metadata (4.6 kB) | |
| Collecting argon2-cffi>=21.1 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached argon2_cffi-23.1.0-py3-none-any.whl.metadata (5.2 kB) | |
| Collecting jupyter-events>=0.9.0 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached jupyter_events-0.10.0-py3-none-any.whl.metadata (5.9 kB) | |
| Collecting jupyter-server-terminals>=0.4.4 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached jupyter_server_terminals-0.5.3-py3-none-any.whl.metadata (5.6 kB) | |
| Collecting overrides>=5.0 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached overrides-7.7.0-py3-none-any.whl.metadata (5.8 kB) | |
| Collecting prometheus-client>=0.9 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached prometheus_client-0.20.0-py3-none-any.whl.metadata (1.8 kB) | |
| Collecting send2trash>=1.8.2 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached Send2Trash-1.8.3-py3-none-any.whl.metadata (4.0 kB) | |
| Collecting terminado>=0.8.3 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached terminado-0.18.1-py3-none-any.whl.metadata (5.8 kB) | |
| Collecting websocket-client>=1.7 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached websocket_client-1.8.0-py3-none-any.whl.metadata (8.0 kB) | |
| Collecting async-lru>=1.0.0 (from jupyterlab<4.3,>=4.2.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached async_lru-2.0.4-py3-none-any.whl.metadata (4.5 kB) | |
| Collecting httpx>=0.25.0 (from jupyterlab<4.3,>=4.2.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached httpx-0.27.0-py3-none-any.whl.metadata (7.2 kB) | |
| Collecting jupyter-lsp>=2.0.0 (from jupyterlab<4.3,>=4.2.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached jupyter_lsp-2.2.5-py3-none-any.whl.metadata (1.8 kB) | |
| Collecting json5>=0.9.0 (from jupyterlab-server<3,>=2.27.1->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached json5-0.9.25-py3-none-any.whl.metadata (30 kB) | |
| Collecting wcwidth (from prompt-toolkit>=3.0.30->jupyter-console->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached wcwidth-0.2.13-py2.py3-none-any.whl.metadata (14 kB) | |
| Collecting sniffio>=1.1 (from anyio>=3.1.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached sniffio-1.3.1-py3-none-any.whl.metadata (3.9 kB) | |
| Collecting argon2-cffi-bindings (from argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached argon2_cffi_bindings-21.2.0-cp38-abi3-macosx_10_9_universal2.whl.metadata (6.7 kB) | |
| Collecting httpcore==1.* (from httpx>=0.25.0->jupyterlab<4.3,>=4.2.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached httpcore-1.0.5-py3-none-any.whl.metadata (20 kB) | |
| Collecting h11<0.15,>=0.13 (from httpcore==1.*->httpx>=0.25.0->jupyterlab<4.3,>=4.2.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached h11-0.14.0-py3-none-any.whl.metadata (8.2 kB) | |
| Collecting parso<0.9.0,>=0.8.3 (from jedi>=0.16->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached parso-0.8.4-py2.py3-none-any.whl.metadata (7.7 kB) | |
| Collecting python-json-logger>=2.0.4 (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached python_json_logger-2.0.7-py3-none-any.whl.metadata (6.5 kB) | |
| Collecting rfc3339-validator (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached rfc3339_validator-0.1.4-py2.py3-none-any.whl.metadata (1.5 kB) | |
| Collecting rfc3986-validator>=0.1.1 (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached rfc3986_validator-0.1.1-py2.py3-none-any.whl.metadata (1.7 kB) | |
| Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached ptyprocess-0.7.0-py2.py3-none-any.whl.metadata (1.3 kB) | |
| Collecting executing>=1.2.0 (from stack-data->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached executing-2.0.1-py2.py3-none-any.whl.metadata (9.0 kB) | |
| Collecting asttokens>=2.1.0 (from stack-data->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB) | |
| Collecting pure-eval (from stack-data->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached pure_eval-0.2.2-py3-none-any.whl.metadata (6.2 kB) | |
| Collecting fqdn (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached fqdn-1.5.1-py3-none-any.whl.metadata (1.4 kB) | |
| Collecting isoduration (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached isoduration-20.11.0-py3-none-any.whl.metadata (5.7 kB) | |
| Collecting jsonpointer>1.13 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached jsonpointer-3.0.0-py2.py3-none-any.whl.metadata (2.3 kB) | |
| Collecting uri-template (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached uri_template-1.3.0-py3-none-any.whl.metadata (8.8 kB) | |
| Collecting webcolors>=1.11 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached webcolors-24.6.0-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting cffi>=1.0.1 (from argon2-cffi-bindings->argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached cffi-1.16.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (1.5 kB) | |
| Collecting pycparser (from cffi>=1.0.1->argon2-cffi-bindings->argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes) | |
| Collecting arrow>=0.15.0 (from isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached arrow-1.3.0-py3-none-any.whl.metadata (7.5 kB) | |
| Collecting types-python-dateutil>=2.8.10 (from arrow>=0.15.0->isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached types_python_dateutil-2.9.0.20240316-py3-none-any.whl.metadata (1.8 kB) | |
| Using cached scikit_build_core-0.9.8-py3-none-any.whl (152 kB) | |
| Using cached setuptools_scm-8.1.0-py3-none-any.whl (43 kB) | |
| Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) | |
| Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl (169 kB) | |
| Using cached find_libpython-0.4.0-py3-none-any.whl (8.7 kB) | |
| Using cached sympy-1.12.1-py3-none-any.whl (5.7 MB) | |
| Using cached pytest-8.1.1-py3-none-any.whl (337 kB) | |
| Using cached pytest_cov-5.0.0-py3-none-any.whl (21 kB) | |
| Using cached numpy-2.0.0-cp310-cp310-macosx_11_0_arm64.whl (13.3 MB) | |
| Using cached jupyter_client-8.6.2-py3-none-any.whl (105 kB) | |
| Using cached jupyter-1.0.0-py2.py3-none-any.whl (2.7 kB) | |
| Using cached myst_parser-1.0.0-py3-none-any.whl (77 kB) | |
| Using cached mistune-2.0.5-py2.py3-none-any.whl (24 kB) | |
| Using cached nbconvert-7.16.4-py3-none-any.whl (257 kB) | |
| Using cached nbsphinx-0.9.4-py3-none-any.whl (31 kB) | |
| Using cached sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) | |
| Using cached sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) | |
| Using cached sphinx-5.3.0-py3-none-any.whl (3.2 MB) | |
| Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl (2.8 MB) | |
| Using cached docutils-0.19-py3-none-any.whl (570 kB) | |
| Using cached alabaster-0.7.16-py3-none-any.whl (13 kB) | |
| Using cached Babel-2.15.0-py3-none-any.whl (9.6 MB) | |
| Using cached bleach-6.1.0-py3-none-any.whl (162 kB) | |
| Using cached coverage-7.5.4-cp310-cp310-macosx_11_0_arm64.whl (205 kB) | |
| Using cached exceptiongroup-1.2.1-py3-none-any.whl (16 kB) | |
| Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) | |
| Using cached jupyter_core-5.7.2-py3-none-any.whl (28 kB) | |
| Using cached markdown_it_py-2.2.0-py3-none-any.whl (84 kB) | |
| Using cached MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl (18 kB) | |
| Using cached mdit_py_plugins-0.3.5-py3-none-any.whl (52 kB) | |
| Using cached mpmath-1.3.0-py3-none-any.whl (536 kB) | |
| Using cached nbclient-0.10.0-py3-none-any.whl (25 kB) | |
| Using cached nbformat-5.10.4-py3-none-any.whl (78 kB) | |
| Using cached packaging-24.1-py3-none-any.whl (53 kB) | |
| Using cached pandocfilters-1.5.1-py2.py3-none-any.whl (8.7 kB) | |
| Using cached pathspec-0.12.1-py3-none-any.whl (31 kB) | |
| Using cached pluggy-1.5.0-py3-none-any.whl (20 kB) | |
| Using cached pygments-2.18.0-py3-none-any.whl (1.2 MB) | |
| Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) | |
| Using cached pyzmq-26.0.3-cp310-cp310-macosx_10_15_universal2.whl (1.4 MB) | |
| Using cached requests-2.32.3-py3-none-any.whl (64 kB) | |
| Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) | |
| Using cached sphinxcontrib_jquery-4.1-py2.py3-none-any.whl (121 kB) | |
| Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl (92 kB) | |
| Using cached tomli-2.0.1-py3-none-any.whl (12 kB) | |
| Using cached tornado-6.4.1-cp38-abi3-macosx_10_9_universal2.whl (435 kB) | |
| Using cached traitlets-5.14.3-py3-none-any.whl (85 kB) | |
| Using cached beautifulsoup4-4.12.3-py3-none-any.whl (147 kB) | |
| Using cached defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) | |
| Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB) | |
| Using cached ipykernel-6.29.5-py3-none-any.whl (117 kB) | |
| Using cached ipywidgets-8.1.3-py3-none-any.whl (139 kB) | |
| Using cached jupyter_console-6.6.3-py3-none-any.whl (24 kB) | |
| Using cached jupyterlab_pygments-0.3.0-py3-none-any.whl (15 kB) | |
| Using cached notebook-7.2.1-py3-none-any.whl (5.0 MB) | |
| Using cached qtconsole-5.5.2-py3-none-any.whl (123 kB) | |
| Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl (83 kB) | |
| Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) | |
| Using cached sphinxcontrib_qthelp-1.0.7-py3-none-any.whl (89 kB) | |
| Using cached tinycss2-1.3.0-py3-none-any.whl (22 kB) | |
| Using cached certifi-2024.6.2-py3-none-any.whl (164 kB) | |
| Using cached charset_normalizer-3.3.2-cp310-cp310-macosx_11_0_arm64.whl (120 kB) | |
| Using cached comm-0.2.2-py3-none-any.whl (7.2 kB) | |
| Using cached debugpy-1.8.2-py2.py3-none-any.whl (4.8 MB) | |
| Using cached fastjsonschema-2.20.0-py3-none-any.whl (23 kB) | |
| Using cached idna-3.7-py3-none-any.whl (66 kB) | |
| Using cached ipython-8.26.0-py3-none-any.whl (817 kB) | |
| Using cached jsonschema-4.22.0-py3-none-any.whl (88 kB) | |
| Using cached jupyter_server-2.14.1-py3-none-any.whl (383 kB) | |
| Using cached jupyterlab-4.2.3-py3-none-any.whl (11.6 MB) | |
| Using cached jupyterlab_server-2.27.2-py3-none-any.whl (59 kB) | |
| Using cached jupyterlab_widgets-3.0.11-py3-none-any.whl (214 kB) | |
| Using cached matplotlib_inline-0.1.7-py3-none-any.whl (9.9 kB) | |
| Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) | |
| Using cached notebook_shim-0.2.4-py3-none-any.whl (13 kB) | |
| Using cached platformdirs-4.2.2-py3-none-any.whl (18 kB) | |
| Using cached prompt_toolkit-3.0.47-py3-none-any.whl (386 kB) | |
| Using cached QtPy-2.4.1-py3-none-any.whl (93 kB) | |
| Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) | |
| Using cached soupsieve-2.5-py3-none-any.whl (36 kB) | |
| Using cached urllib3-2.2.2-py3-none-any.whl (121 kB) | |
| Using cached webencodings-0.5.1-py2.py3-none-any.whl (11 kB) | |
| Using cached widgetsnbextension-4.0.11-py3-none-any.whl (2.3 MB) | |
| Using cached appnope-0.1.4-py2.py3-none-any.whl (4.3 kB) | |
| Using cached nest_asyncio-1.6.0-py3-none-any.whl (5.2 kB) | |
| Using cached psutil-6.0.0-cp38-abi3-macosx_11_0_arm64.whl (251 kB) | |
| Using cached anyio-4.4.0-py3-none-any.whl (86 kB) | |
| Using cached argon2_cffi-23.1.0-py3-none-any.whl (15 kB) | |
| Using cached async_lru-2.0.4-py3-none-any.whl (6.1 kB) | |
| Using cached attrs-23.2.0-py3-none-any.whl (60 kB) | |
| Using cached httpx-0.27.0-py3-none-any.whl (75 kB) | |
| Using cached httpcore-1.0.5-py3-none-any.whl (77 kB) | |
| Using cached jedi-0.19.1-py2.py3-none-any.whl (1.6 MB) | |
| Using cached json5-0.9.25-py3-none-any.whl (30 kB) | |
| Using cached jsonschema_specifications-2023.12.1-py3-none-any.whl (18 kB) | |
| Using cached jupyter_events-0.10.0-py3-none-any.whl (18 kB) | |
| Using cached jupyter_lsp-2.2.5-py3-none-any.whl (69 kB) | |
| Using cached jupyter_server_terminals-0.5.3-py3-none-any.whl (13 kB) | |
| Using cached overrides-7.7.0-py3-none-any.whl (17 kB) | |
| Using cached pexpect-4.9.0-py2.py3-none-any.whl (63 kB) | |
| Using cached prometheus_client-0.20.0-py3-none-any.whl (54 kB) | |
| Using cached referencing-0.35.1-py3-none-any.whl (26 kB) | |
| Using cached rpds_py-0.18.1-cp310-cp310-macosx_11_0_arm64.whl (322 kB) | |
| Using cached Send2Trash-1.8.3-py3-none-any.whl (18 kB) | |
| Using cached terminado-0.18.1-py3-none-any.whl (14 kB) | |
| Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) | |
| Using cached websocket_client-1.8.0-py3-none-any.whl (58 kB) | |
| Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB) | |
| Using cached stack_data-0.6.3-py3-none-any.whl (24 kB) | |
| Using cached wcwidth-0.2.13-py2.py3-none-any.whl (34 kB) | |
| Using cached asttokens-2.4.1-py2.py3-none-any.whl (27 kB) | |
| Using cached executing-2.0.1-py2.py3-none-any.whl (24 kB) | |
| Using cached parso-0.8.4-py2.py3-none-any.whl (103 kB) | |
| Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) | |
| Using cached python_json_logger-2.0.7-py3-none-any.whl (8.1 kB) | |
| Using cached rfc3986_validator-0.1.1-py2.py3-none-any.whl (4.2 kB) | |
| Using cached sniffio-1.3.1-py3-none-any.whl (10 kB) | |
| Using cached argon2_cffi_bindings-21.2.0-cp38-abi3-macosx_10_9_universal2.whl (53 kB) | |
| Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB) | |
| Using cached rfc3339_validator-0.1.4-py2.py3-none-any.whl (3.5 kB) | |
| Using cached cffi-1.16.0-cp310-cp310-macosx_11_0_arm64.whl (176 kB) | |
| Using cached h11-0.14.0-py3-none-any.whl (58 kB) | |
| Using cached jsonpointer-3.0.0-py2.py3-none-any.whl (7.6 kB) | |
| Using cached webcolors-24.6.0-py3-none-any.whl (14 kB) | |
| Using cached fqdn-1.5.1-py3-none-any.whl (9.1 kB) | |
| Using cached isoduration-20.11.0-py3-none-any.whl (11 kB) | |
| Using cached uri_template-1.3.0-py3-none-any.whl (11 kB) | |
| Using cached arrow-1.3.0-py3-none-any.whl (66 kB) | |
| Using cached pycparser-2.22-py3-none-any.whl (117 kB) | |
| Using cached types_python_dateutil-2.9.0.20240316-py3-none-any.whl (9.7 kB) | |
| Installing collected packages: webencodings, wcwidth, snowballstemmer, pure-eval, ptyprocess, mpmath, mistune, find_libpython, fastjsonschema, widgetsnbextension, websocket-client, webcolors, urllib3, uri-template, typing-extensions, types-python-dateutil, traitlets, tornado, tomli, tinycss2, sympy, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, sniffio, six, send2trash, rpds-py, rfc3986-validator, pyzmq, PyYAML, python-json-logger, pygments, pycparser, psutil, prompt-toolkit, prometheus-client, pluggy, platformdirs, pexpect, pathspec, parso, pandocfilters, packaging, overrides, numpy, nest-asyncio, mdurl, MarkupSafe, jupyterlab-widgets, jupyterlab-pygments, jsonpointer, json5, iniconfig, imagesize, idna, h11, fqdn, executing, exceptiongroup, docutils, defusedxml, decorator, debugpy, coverage, charset-normalizer, certifi, babel, attrs, appnope, alabaster, terminado, setuptools-scm, scikit-build-core, rfc3339-validator, requests, referencing, qtpy, python-dateutil, pytest, matplotlib-inline, markdown-it-py, jupyter-core, Jinja2, jedi, httpcore, comm, cffi, bleach, beautifulsoup4, async-lru, asttokens, anyio, stack-data, sphinx, pytest-cov, mdit-py-plugins, jupyter-server-terminals, jupyter-client, jsonschema-specifications, httpx, arrow, argon2-cffi-bindings, sphinxcontrib-jquery, myst_parser, jsonschema, isoduration, ipython, argon2-cffi, sphinx-rtd-theme, nbformat, ipywidgets, ipykernel, qtconsole, nbclient, jupyter-events, jupyter-console, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, notebook, jupyter | |
| Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 PyYAML-6.0.1 alabaster-0.7.16 anyio-4.4.0 appnope-0.1.4 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 asttokens-2.4.1 async-lru-2.0.4 attrs-23.2.0 babel-2.15.0 beautifulsoup4-4.12.3 bleach-6.1.0 certifi-2024.6.2 cffi-1.16.0 charset-normalizer-3.3.2 comm-0.2.2 coverage-7.5.4 debugpy-1.8.2 decorator-5.1.1 defusedxml-0.7.1 docutils-0.19 exceptiongroup-1.2.1 executing-2.0.1 fastjsonschema-2.20.0 find_libpython-0.4.0 fqdn-1.5.1 h11-0.14.0 httpcore-1.0.5 httpx-0.27.0 idna-3.7 imagesize-1.4.1 iniconfig-2.0.0 ipykernel-6.29.5 ipython-8.26.0 ipywidgets-8.1.3 isoduration-20.11.0 jedi-0.19.1 json5-0.9.25 jsonpointer-3.0.0 jsonschema-4.22.0 jsonschema-specifications-2023.12.1 jupyter-1.0.0 jupyter-client-8.6.2 jupyter-console-6.6.3 jupyter-core-5.7.2 jupyter-events-0.10.0 jupyter-lsp-2.2.5 jupyter-server-2.14.1 jupyter-server-terminals-0.5.3 jupyterlab-4.2.3 jupyterlab-pygments-0.3.0 jupyterlab-server-2.27.2 jupyterlab-widgets-3.0.11 markdown-it-py-2.2.0 matplotlib-inline-0.1.7 mdit-py-plugins-0.3.5 mdurl-0.1.2 mistune-2.0.5 mpmath-1.3.0 myst_parser-1.0.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.9.4 nest-asyncio-1.6.0 notebook-7.2.1 notebook-shim-0.2.4 numpy-2.0.0 overrides-7.7.0 packaging-24.1 pandocfilters-1.5.1 parso-0.8.4 pathspec-0.12.1 pexpect-4.9.0 platformdirs-4.2.2 pluggy-1.5.0 prometheus-client-0.20.0 prompt-toolkit-3.0.47 psutil-6.0.0 ptyprocess-0.7.0 pure-eval-0.2.2 pycparser-2.22 pygments-2.18.0 pytest-8.1.1 pytest-cov-5.0.0 python-dateutil-2.9.0.post0 python-json-logger-2.0.7 pyzmq-26.0.3 qtconsole-5.5.2 qtpy-2.4.1 referencing-0.35.1 requests-2.32.3 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.18.1 scikit-build-core-0.9.8 send2trash-1.8.3 setuptools-scm-8.1.0 six-1.16.0 sniffio-1.3.1 snowballstemmer-2.2.0 soupsieve-2.5 sphinx-5.3.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 stack-data-0.6.3 sympy-1.12.1 terminado-0.18.1 tinycss2-1.3.0 tomli-2.0.1 tornado-6.4.1 traitlets-5.14.3 types-python-dateutil-2.9.0.20240316 typing-extensions-4.12.2 uri-template-1.3.0 urllib3-2.2.2 wcwidth-0.2.13 webcolors-24.6.0 webencodings-0.5.1 websocket-client-1.8.0 widgetsnbextension-4.0.11 | |
| [notice] A new release of pip is available: 23.3.1 -> 24.1.1 | |
| [notice] To update, run: /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/venv/bin/python3 -m pip install --upgrade pip | |
| [32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m | |
| Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1) | |
| Collecting pip | |
| Using cached pip-24.1.1-py3-none-any.whl.metadata (3.6 kB) | |
| Collecting wheel (from -r nrn_requirements.txt (line 1)) | |
| Using cached wheel-0.43.0-py3-none-any.whl.metadata (2.2 kB) | |
| Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (68.2.2) | |
| Collecting setuptools (from -r nrn_requirements.txt (line 2)) | |
| Using cached setuptools-70.2.0-py3-none-any.whl.metadata (5.8 kB) | |
| Requirement already satisfied: setuptools_scm in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 3)) (8.1.0) | |
| Collecting scikit-build (from -r nrn_requirements.txt (line 4)) | |
| Using cached scikit_build-0.18.0-py3-none-any.whl.metadata (17 kB) | |
| Collecting matplotlib (from -r nrn_requirements.txt (line 5)) | |
| Using cached matplotlib-3.9.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (11 kB) | |
| Collecting bokeh<3 (from -r nrn_requirements.txt (line 7)) | |
| Using cached bokeh-2.4.3-py3-none-any.whl.metadata (14 kB) | |
| Requirement already satisfied: ipython in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 8)) (8.26.0) | |
| Collecting cython<3 (from -r nrn_requirements.txt (line 9)) | |
| Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB) | |
| Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 10)) (24.1) | |
| Requirement already satisfied: pytest<=8.1.1 in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 11)) (8.1.1) | |
| Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 12)) (5.0.0) | |
| Collecting mpi4py (from -r nrn_requirements.txt (line 13)) | |
| Using cached mpi4py-3.1.6-cp310-cp310-macosx_12_0_arm64.whl | |
| Collecting numpy<2 (from -r nrn_requirements.txt (line 14)) | |
| Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB) | |
| Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 15)) (0.4.0) | |
| Requirement already satisfied: tomli>=1 in ./venv/lib/python3.10/site-packages (from setuptools_scm->-r nrn_requirements.txt (line 3)) (2.0.1) | |
| Collecting distro (from scikit-build->-r nrn_requirements.txt (line 4)) | |
| Using cached distro-1.9.0-py3-none-any.whl.metadata (6.8 kB) | |
| Collecting contourpy>=1.0.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB) | |
| Collecting cycler>=0.10 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) | |
| Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (162 kB) | |
| Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB) | |
| Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached pillow-10.4.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.2 kB) | |
| Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB) | |
| Requirement already satisfied: python-dateutil>=2.7 in ./venv/lib/python3.10/site-packages (from matplotlib->-r nrn_requirements.txt (line 5)) (2.9.0.post0) | |
| Requirement already satisfied: Jinja2>=2.9 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (3.1.4) | |
| Requirement already satisfied: PyYAML>=3.10 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (6.0.1) | |
| Requirement already satisfied: tornado>=5.1 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (6.4.1) | |
| Requirement already satisfied: typing-extensions>=3.10.0 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (4.12.2) | |
| Requirement already satisfied: decorator in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (5.1.1) | |
| Requirement already satisfied: jedi>=0.16 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.19.1) | |
| Requirement already satisfied: matplotlib-inline in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.1.7) | |
| Requirement already satisfied: prompt-toolkit<3.1.0,>=3.0.41 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (3.0.47) | |
| Requirement already satisfied: pygments>=2.4.0 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (2.18.0) | |
| Requirement already satisfied: stack-data in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.6.3) | |
| Requirement already satisfied: traitlets>=5.13.0 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (5.14.3) | |
| Requirement already satisfied: exceptiongroup in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (1.2.1) | |
| Requirement already satisfied: pexpect>4.3 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (4.9.0) | |
| Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r nrn_requirements.txt (line 11)) (2.0.0) | |
| Requirement already satisfied: pluggy<2.0,>=1.4 in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r nrn_requirements.txt (line 11)) (1.5.0) | |
| Requirement already satisfied: coverage>=5.2.1 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=5.2.1->pytest-cov->-r nrn_requirements.txt (line 12)) (7.5.4) | |
| Requirement already satisfied: parso<0.9.0,>=0.8.3 in ./venv/lib/python3.10/site-packages (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 8)) (0.8.4) | |
| Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9->bokeh<3->-r nrn_requirements.txt (line 7)) (2.1.5) | |
| Requirement already satisfied: ptyprocess>=0.5 in ./venv/lib/python3.10/site-packages (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 8)) (0.7.0) | |
| Requirement already satisfied: wcwidth in ./venv/lib/python3.10/site-packages (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 8)) (0.2.13) | |
| Requirement already satisfied: six>=1.5 in ./venv/lib/python3.10/site-packages (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5)) (1.16.0) | |
| Requirement already satisfied: executing>=1.2.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (2.0.1) | |
| Requirement already satisfied: asttokens>=2.1.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (2.4.1) | |
| Requirement already satisfied: pure-eval in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (0.2.2) | |
| Using cached pip-24.1.1-py3-none-any.whl (1.8 MB) | |
| Using cached wheel-0.43.0-py3-none-any.whl (65 kB) | |
| Using cached setuptools-70.2.0-py3-none-any.whl (930 kB) | |
| Using cached scikit_build-0.18.0-py3-none-any.whl (85 kB) | |
| Using cached matplotlib-3.9.0-cp310-cp310-macosx_11_0_arm64.whl (7.8 MB) | |
| Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB) | |
| Using cached Cython-0.29.37-py2.py3-none-any.whl (989 kB) | |
| Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB) | |
| Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl (244 kB) | |
| Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB) | |
| Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl (2.2 MB) | |
| Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB) | |
| Using cached pillow-10.4.0-cp310-cp310-macosx_11_0_arm64.whl (3.4 MB) | |
| Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB) | |
| Using cached distro-1.9.0-py3-none-any.whl (20 kB) | |
| Installing collected packages: wheel, setuptools, pyparsing, pip, pillow, numpy, mpi4py, kiwisolver, fonttools, distro, cython, cycler, scikit-build, contourpy, bokeh, matplotlib | |
| Attempting uninstall: setuptools | |
| Found existing installation: setuptools 68.2.2 | |
| Uninstalling setuptools-68.2.2: | |
| Successfully uninstalled setuptools-68.2.2 | |
| Attempting uninstall: pip | |
| Found existing installation: pip 23.3.1 | |
| Uninstalling pip-23.3.1: | |
| Successfully uninstalled pip-23.3.1 | |
| Attempting uninstall: numpy | |
| Found existing installation: numpy 2.0.0 | |
| Uninstalling numpy-2.0.0: | |
| Successfully uninstalled numpy-2.0.0 | |
| Successfully installed bokeh-2.4.3 contourpy-1.2.1 cycler-0.12.1 cython-0.29.37 distro-1.9.0 fonttools-4.53.0 kiwisolver-1.4.5 matplotlib-3.9.0 mpi4py-3.1.6 numpy-1.26.4 pillow-10.4.0 pip-24.1.1 pyparsing-3.1.2 scikit-build-0.18.0 setuptools-70.2.0 wheel-0.43.0 | |
| [32;1m$ source ./venv/bin/activate[0;m | |
| [32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m | |
| [32;1m$ ${PYTHON} --version[0;m | |
| Python 3.10.13 | |
| [32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m | |
| [32;1m$ export CXX=${CXX:-g++}[0;m | |
| [32;1m$ export CC=${CC:-gcc}[0;m | |
| [32;1m$ brew install flex bison[0;m | |
| Warning: flex 2.6.4_2 is already installed and up-to-date. | |
| To reinstall 2.6.4_2, run: | |
| brew reinstall flex | |
| Warning: bison 3.8.2 is already installed and up-to-date. | |
| To reinstall 3.8.2, run: | |
| brew reinstall bison | |
| [32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m | |
| [32;1m$ export INSTALL_DIR=$(pwd)/install[0;m | |
| [32;1m$ echo $LANG[0;m | |
| [32;1m$ echo $LC_ALL[0;m | |
| [32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m | |
| [32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m | |
| [32;1m$ cmake_args=(-G Ninja)[0;m | |
| [32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m | |
| [32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m | |
| [32;1m$ mkdir build && cd build[0;m | |
| [32;1m$ echo "Building with ${cmake_args[@]}"[0;m | |
| Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/venv/bin/python | |
| [32;1m$ cmake .. "${cmake_args[@]}"[0;m | |
| -- The C compiler identification is AppleClang 14.0.0.14000029 | |
| -- The CXX compiler identification is AppleClang 14.0.0.14000029 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /usr/bin/gcc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /usr/bin/g++ - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check | |
| -- Sub-module : missing external/coding-conventions : running git submodule update --init | |
| Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions' | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/coding-conventions'... | |
| Submodule path 'external/coding-conventions': checked out '3d157f9c8ea94d196a825aaa7f523265e360dc4b' | |
| -- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123 | |
| Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123' | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/Random123'... | |
| From https://github.com/BlueBrain/Random123 | |
| * branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD | |
| Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1' | |
| -- 3rd party project: using Random123 from "external/Random123" | |
| -- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen | |
| Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen' | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/eigen'... | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
| Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
| -- 3rd party project: using eigen from "external/eigen" | |
| -- Enabling sanitizers: address | |
| -- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| -- Checking if /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/venv/bin/python is a working python | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") | |
| -- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6") | |
| -- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include | |
| -- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Sub-module : missing /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nanobind : running git submodule update --recursive;--depth;1 --init | |
| Submodule 'external/nanobind' (https://github.com/wjakob/nanobind) registered for path 'external/nanobind' | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nanobind'... | |
| From https://github.com/wjakob/nanobind | |
| * branch 8d7f1ee0621c17fa370b704b2100ffa0243d5bfb -> FETCH_HEAD | |
| Submodule path 'external/nanobind': checked out '8d7f1ee0621c17fa370b704b2100ffa0243d5bfb' | |
| Submodule 'ext/robin_map' (https://github.com/Tessil/robin-map) registered for path 'external/nanobind/ext/robin_map' | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nanobind/ext/robin_map'... | |
| From https://github.com/Tessil/robin-map | |
| * branch 188c45569cc2a5dd768077c193830b51d33a5020 -> FETCH_HEAD | |
| Submodule path 'external/nanobind/ext/robin_map': checked out '188c45569cc2a5dd768077c193830b51d33a5020' | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
| -- Found Threads: TRUE | |
| -- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11 | |
| Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11' | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/CLI11'... | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD | |
| Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2' | |
| -- 3rd party project: using CLI11 from "external/CLI11" | |
| CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required): | |
| Compatibility with CMake < 3.5 will be removed from a future version of | |
| CMake. | |
| Update the VERSION argument <min> value or use a ...<max> suffix to tell | |
| CMake that the project does not need compatibility with older versions. | |
| -- Building CoreNEURON | |
| -- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") | |
| -- Found Perl: /usr/bin/perl (found version "5.30.3") | |
| -- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH) | |
| -- Sub-project : using nmodl from from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl | |
| -- CHECKING FOR FLEX/BISON | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") | |
| -- Adding Flex include path as : /opt/homebrew/opt/flex/include/ | |
| -- NMODL_TEST_FORMATTING: OFF | |
| -- NMODL_GIT_HOOKS: OFF | |
| -- NMODL_GIT_COMMIT_HOOKS: | |
| -- NMODL_GIT_PUSH_HOOKS: courtesy-msg | |
| -- NMODL_STATIC_ANALYSIS: OFF | |
| -- NMODL_TEST_STATIC_ANALYSIS: OFF | |
| -- 3rd party project: using eigen from "ext/eigen" | |
| -- 3rd party project: using fmt from "ext/fmt" | |
| -- Version: 10.2.1 | |
| -- Build type: Custom | |
| -- 3rd party project: using json from "ext/json" | |
| -- Using the multi-header code from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/ext/json/include/ | |
| -- 3rd party project: using pybind11 from "ext/pybind11" | |
| -- pybind11 v2.12.0 | |
| -- Found PythonInterp: /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.6") | |
| -- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- 3rd party project: using spdlog from "ext/spdlog" | |
| -- Build spdlog: 1.13.0 | |
| -- Build type: Custom | |
| -- CHECKING FOR PYTHON | |
| -- Found Python: /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/venv/bin/python3.10 (found suitable version "3.10.13", minimum required is "3.8") found components: Interpreter | |
| CMake Warning (dev) at external/nmodl/src/pybind/CMakeLists.txt:27 (configure_file): | |
| configure_file called with unknown argument(s): | |
| @ONLY@ | |
| This warning is for project developers. Use -Wno-dev to suppress it. | |
| -- | |
| -- Configured NMODL 0.0 (c5ecfea 2024-06-10 16:25:23 +0200) | |
| -- | |
| -- You can now build NMODL using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------------+-------------------------------------------------------- | |
| -- test | Run unit tests | |
| -- install | Will install NMODL to: /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/install | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd | |
| -- Build Type | Custom | |
| -- Python Bindings | OFF | |
| -- Flex | /opt/homebrew/opt/flex/bin/flex | |
| -- Bison | /opt/homebrew/opt/bison/bin/bison | |
| -- Python | /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/venv/bin/python | |
| -- Linked against | ON | |
| -- --------------------+-------------------------------------------------------- | |
| -- See documentation : https://github.com/BlueBrain/nmodl/ | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| -- | |
| -- CoreNEURON is enabled with following build configuration: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
| -- Build Type | SHARED | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
| -- OpenMP | ON | |
| -- NMODL PATH | /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/build/bin/nmodl | |
| -- NMODL FLAGS | | |
| -- GPU Support | OFF | |
| -- Auto Timeout | ON | |
| -- Wrap exp() | OFF | |
| -- SplayTree Queue | ON | |
| -- NetReceive Buffer | ON | |
| -- Caliper | OFF | |
| -- Likwid | OFF | |
| -- Unit Tests | ON | |
| -- Reporting | OFF | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| Extracting link flags from target 'nrngnu', beware that this can be fragile. Got: | |
| Extracting link flags from target 'sparse13', beware that this can be fragile. Got: | |
| For 'nrnpython' going to see TARGET 'nanobind' recursively. | |
| Extracting link flags from target 'nanobind', beware that this can be fragile. Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;nanobind | |
| Extracting link flags from target 'nrnpython', beware that this can be fragile. Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;nanobind | |
| Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;nanobind | |
| Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
| -- Sub-module : missing /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/catch2 : running git submodule update --init | |
| Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2' | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/catch2'... | |
| Submodule path 'external/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b' | |
| -- Found Python module 'pytest' with version(s): 8.1.1 | |
| -- Found Python module 'pytest_cov' with version(s): 5.0.0 | |
| -- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata | |
| Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata' | |
| Cloning into '/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/test/rxd/testdata'... | |
| From https://github.com/neuronsimulator/rxdtestdata | |
| * branch 30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD | |
| Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58' | |
| -- 3rd party project: using rxd/testdata from "test/rxd/testdata" | |
| -- Found Python module 'mpi4py' with version(s): 3.1.6 | |
| -- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled | |
| -- Found Python module 'mpi4py' with version(s): 3.1.6 | |
| -- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled | |
| -- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled | |
| -- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0") | |
| -- | |
| -- Configured NEURON 9.0.0 | |
| -- | |
| -- You can now build NEURON using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------+-------------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------+-------------------------------------------------------------- | |
| -- install | Will install NEURON to: /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/install | |
| -- | Change the install location of NEURON using: | |
| -- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path> | |
| -- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean | |
| -- uninstall | Removes files installed by make install (todo) | |
| -- --------------+-------------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------+-------------------------------------------------------------- | |
| -- C COMPILER | /usr/bin/gcc | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug) | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd | |
| -- Shared | ON | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
| -- LIB | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
| -- Python | ON | |
| -- DYNAMIC | OFF | |
| -- MODULE | ON | |
| -- python3.10 (default) | |
| -- EXE | /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/venv/bin/python | |
| -- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 | |
| -- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd | |
| -- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd | |
| -- RX3D | OFF | |
| -- Interviews | OFF | |
| -- CoreNEURON | ON | |
| -- PATH | /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/coreneuron | |
| -- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
| -- Tests | ON | |
| -- --------------+-------------------------------------------------------------- | |
| -- See documentation : https://www.neuron.yale.edu/neuron/ | |
| -- --------------+-------------------------------------------------------------- | |
| -- | |
| -- Configuring done (28.0s) | |
| -- Generating done (0.2s) | |
| -- Build files have been written to: /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/build | |
| [32;1m$ ccache -z[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache -vs 2>/dev/null[0;m | |
| Cache directory: /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/ccache | |
| Config file: /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/ccache/ccache.conf | |
| System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf | |
| Stats updated: Wed Jul 3 16:39:23 2024 | |
| Local storage: | |
| Cache size (GiB): 0.0 / 5.0 ( 0.00%) | |
| Files: 0 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ cmake --build . --parallel[0;m | |
| [0/2] Re-checking globbed directories... | |
| [1/1932] Generating share/nrn/demo/d3init.hoc | |
| [2/1932] Generating share/nrn/demo/dend3/syn3.hoc | |
| [3/1932] Generating share/nrn/demo/cycle.hoc | |
| [4/1932] Generating share/nrn/demo/demo.ses | |
| [5/1932] Generating share/nrn/demo/dend3.ses | |
| [6/1932] Generating share/nrn/demo/dend3/control.hoc | |
| [7/1932] Generating share/nrn/demo/dend3/dend3.nrn | |
| [8/1932] Generating share/nrn/demo/demo.hoc | |
| [9/1932] Generating share/nrn/demo/dynchan.ses | |
| [10/1932] Generating share/nrn/demo/dynclamp.ses | |
| [11/1932] Generating share/nrn/demo/dynclamp.hoc | |
| [12/1932] Generating share/nrn/demo/nomodel.hoc | |
| [13/1932] Generating share/nrn/demo/pyramid.ses | |
| [14/1932] Generating share/nrn/demo/hh.hoc | |
| [15/1932] Generating share/nrn/demo/hh.ses | |
| [16/1932] Generating share/nrn/demo/reconst.hoc | |
| [17/1932] Generating share/nrn/demo/pyramid.nrn | |
| [18/1932] Update hh.mod for CoreNEURON compatibility | |
| [19/1932] Generating share/nrn/demo/release.hoc | |
| [20/1932] Generating share/nrn/demo/release.ses | |
| [21/1932] Generating share/nrn/demo/release/cachan1.mod | |
| [22/1932] Generating share/nrn/demo/release/cabpump.mod | |
| [23/1932] Generating share/nrn/demo/release/capump.mod | |
| [24/1932] Generating share/nrn/demo/release/camchan.mod | |
| [25/1932] Generating share/nrn/demo/release/khhchan.mod | |
| [26/1932] Generating share/nrn/demo/release/invlfire.mod | |
| [27/1932] Generating share/nrn/demo/release/nacaex.mod | |
| [28/1932] Generating share/nrn/demo/release/release.mod | |
| [29/1932] Generating share/nrn/demo/singhhchan.hoc | |
| [30/1932] Generating share/nrn/demo/singhh.ses | |
| [31/1932] Generating share/nrn/demo/release/nachan.mod | |
| [32/1932] Generating share/nrn/demo/singhh.hoc | |
| [33/1932] Generating share/nrn/demo/sync/cell.hoc | |
| [34/1932] Generating share/nrn/demo/sync/spkplot.hoc | |
| [35/1932] Generating share/nrn/demo/sync/synchronize.hoc | |
| [36/1932] Generating share/nrn/demo/sync/demosync.hoc | |
| [37/1932] Generating share/nrn/demo/sync/start.ses | |
| [38/1932] Generating share/nrn/demo/testca.hoc | |
| [39/1932] Generating share/nrn/demo/sync/init.hoc | |
| [40/1932] Generating share/nrn/lib/auditscripts/gettarname | |
| [41/1932] Generating share/nrn/lib/auditscripts/retrieve.sh | |
| [42/1932] Generating share/nrn/lib/auditscripts/hocaudit.sh | |
| [43/1932] Generating share/nrn/lib/hoc/atoltool.hoc | |
| [44/1932] Generating share/nrn/lib/auditscripts/notes | |
| [45/1932] Generating share/nrn/lib/helpdict | |
| [46/1932] Generating share/nrn/lib/auditscripts/saveaudit | |
| [47/1932] Generating share/nrn/lib/cleanup | |
| [48/1932] Generating share/nrn/lib/hoc/binfo.hoc | |
| [49/1932] Generating share/nrn/lib/hoc/attshape.hoc | |
| [50/1932] Generating share/nrn/lib/hoc/celbild/celbild1.hoc | |
| [51/1932] Generating share/nrn/lib/hoc/celbild.hoc | |
| [52/1932] Generating share/nrn/lib/hoc/celbild/celgeom.hoc | |
| [53/1932] Generating share/nrn/lib/hoc/celbild/celmang.hoc | |
| [54/1932] Generating share/nrn/lib/hoc/celbild/celtopol.hoc | |
| [55/1932] Generating share/nrn/lib/hoc/celbild/celmemb.hoc | |
| [56/1932] Generating share/nrn/lib/hoc/celbild/celset.hoc | |
| [57/1932] Generating share/nrn/lib/hoc/celbild/inhomofn.hoc | |
| [58/1932] Generating share/nrn/lib/hoc/chanbild/chanbild1.hoc | |
| [59/1932] Generating share/nrn/lib/hoc/celbild/psubset.hoc | |
| [60/1932] Generating share/nrn/lib/hoc/chanbild.hoc | |
| [61/1932] Generating share/nrn/lib/hoc/chanbild/const.hoc | |
| [62/1932] Generating share/nrn/lib/hoc/chanbild/exp.hoc | |
| [63/1932] Generating share/nrn/lib/hoc/chanbild/kschanbg.hoc | |
| [64/1932] Generating share/nrn/lib/hoc/chanbild/gategui.hoc | |
| [65/1932] Generating share/nrn/lib/hoc/chanbild/ksstate.hoc | |
| [66/1932] Generating share/nrn/lib/hoc/chanbild/ksgate.hoc | |
| [67/1932] Generating share/nrn/lib/hoc/chanbild/linoid.hoc | |
| [68/1932] Generating share/nrn/lib/hoc/chanbild/sigmoid.hoc | |
| [69/1932] Generating share/nrn/lib/hoc/chanbild/kstgui.hoc | |
| [70/1932] Generating share/nrn/lib/hoc/chanbild/kstrans.hoc | |
| [71/1932] Generating share/nrn/lib/hoc/chanbild/table.hoc | |
| [72/1932] Generating share/nrn/lib/hoc/chanbild/properties.hoc | |
| [73/1932] Generating share/nrn/lib/hoc/corenrn.hoc | |
| [74/1932] Generating share/nrn/lib/hoc/electrod.hoc | |
| [75/1932] Generating share/nrn/lib/hoc/gatherv.hoc | |
| [76/1932] Generating share/nrn/lib/hoc/family.hoc | |
| [77/1932] Generating share/nrn/lib/hoc/grapher.hoc | |
| [78/1932] Generating share/nrn/lib/hoc/impedanc.hoc | |
| [79/1932] Generating share/nrn/lib/hoc/funfit.hoc | |
| [80/1932] Generating share/nrn/lib/hoc/import3d.hoc | |
| [81/1932] Generating share/nrn/lib/hoc/impedanx.hoc | |
| [82/1932] Generating share/nrn/lib/hoc/import3d/import3d_sec.hoc | |
| [83/1932] Generating share/nrn/lib/hoc/import3d/read_nlcda.hoc | |
| [84/1932] Generating share/nrn/lib/hoc/import3d/read_nts.hoc | |
| [85/1932] Generating share/nrn/lib/hoc/import3d/import3d_gui.hoc | |
| [86/1932] Generating share/nrn/lib/hoc/import3d/read_morphml.hoc | |
| [87/1932] Generating share/nrn/lib/hoc/import3d/read_nlcda3.hoc | |
| [88/1932] Generating share/nrn/lib/hoc/inserter.hoc | |
| [89/1932] Generating share/nrn/lib/hoc/import3d/read_swc.hoc | |
| [90/1932] Generating share/nrn/lib/hoc/impratio.hoc | |
| [91/1932] Generating share/nrn/lib/hoc/lincir/lincir1.hoc | |
| [92/1932] Generating share/nrn/lib/hoc/lincir.hoc | |
| [93/1932] Generating share/nrn/lib/hoc/lincir/linmech.hoc | |
| [94/1932] Generating share/nrn/lib/hoc/lincir/lingraph.hoc | |
| [95/1932] Generating share/nrn/lib/hoc/lincir/elmbase.hoc | |
| [96/1932] Generating share/nrn/lib/hoc/loadbal.hoc | |
| [97/1932] Generating share/nrn/lib/hoc/mkcurve.hoc | |
| [98/1932] Generating share/nrn/lib/hoc/logax.hoc | |
| [99/1932] Generating share/nrn/lib/hoc/mknrndll.hoc | |
| [100/1932] Generating share/nrn/lib/hoc/macload.hoc | |
| [101/1932] Generating share/nrn/lib/hoc/modlunit.hoc | |
| [102/1932] Generating share/nrn/lib/hoc/movierun.hoc | |
| [103/1932] Generating share/nrn/lib/hoc/mulfit/clampfit.hoc | |
| [104/1932] Generating share/nrn/lib/hoc/mulfit.hoc | |
| [105/1932] Generating share/nrn/lib/hoc/mulfit/e_norm.hoc | |
| [106/1932] Generating share/nrn/lib/hoc/mulfit/e_actpot.hoc | |
| [107/1932] Generating share/nrn/lib/hoc/mulfit/e_xy.hoc | |
| [108/1932] Generating share/nrn/lib/hoc/mulfit/eonefunc.hoc | |
| [109/1932] Generating share/nrn/lib/hoc/mulfit/e_y.hoc | |
| [110/1932] Generating share/nrn/lib/hoc/mulfit/eoneprim.hoc | |
| [111/1932] Generating share/nrn/lib/hoc/mulfit/eparmlst.hoc | |
| [112/1932] Generating share/nrn/lib/hoc/mulfit/fitparm.hoc | |
| [113/1932] Generating share/nrn/lib/hoc/mulfit/protorun.hoc | |
| [114/1932] Generating share/nrn/lib/hoc/mulfit/eonerun.hoc | |
| [115/1932] Generating share/nrn/lib/hoc/mulfit/mulfit1.hoc | |
| [116/1932] Generating share/nrn/lib/hoc/mulfit/optwrap.hoc | |
| [117/1932] Generating share/nrn/lib/hoc/mview/allpp.hoc | |
| [118/1932] Generating share/nrn/lib/hoc/mview.hoc | |
| [119/1932] Generating share/nrn/lib/hoc/mview/allcell.hoc | |
| [120/1932] Generating share/nrn/lib/hoc/mview/artview.hoc | |
| [121/1932] Generating share/nrn/lib/hoc/mview/distinct.hoc | |
| [122/1932] Generating share/nrn/lib/hoc/mview/mview1.hoc | |
| [123/1932] Generating share/nrn/lib/hoc/mview/mviewgui.hoc | |
| [124/1932] Generating share/nrn/lib/hoc/mview/distinctparm.hoc | |
| [125/1932] Generating help_data.dat | |
| [126/1932] Generating share/nrn/lib/hoc/mview/ncview.hoc | |
| [127/1932] Generating share/nrn/lib/hoc/mview/mviewxml.hoc | |
| [128/1932] Generating share/nrn/lib/hoc/mview/parmsets.hoc | |
| [129/1932] Generating share/nrn/lib/hoc/mview/parmvals.hoc | |
| [130/1932] Generating share/nrn/lib/hoc/mview/ppanal.hoc | |
| [131/1932] Generating share/nrn/lib/hoc/mview/treeview.hoc | |
| [132/1932] Generating share/nrn/lib/hoc/mview/secanal.hoc | |
| [133/1932] Generating share/nrn/lib/hoc/mview/rcclasses.hoc | |
| [134/1932] Generating share/nrn/lib/hoc/mview/realcell.hoc | |
| [135/1932] Generating share/nrn/lib/hoc/netbild/netgui.hoc | |
| [136/1932] Generating share/nrn/lib/hoc/netbild/edgegui.hoc | |
| [137/1932] Generating share/nrn/lib/hoc/netbild/netdata.hoc | |
| [138/1932] Generating share/nrn/lib/hoc/netbild.hoc | |
| [139/1932] Generating share/nrn/lib/hoc/netbild/grstrlst.hoc | |
| [140/1932] Generating share/nrn/lib/hoc/netbild/artcel.hoc | |
| [141/1932] Generating share/nrn/lib/hoc/netbild/spkplot.hoc | |
| [142/1932] Generating share/nrn/lib/hoc/netbild/syntypes.hoc | |
| [143/1932] Generating share/nrn/lib/hoc/netparmpi.hoc | |
| [144/1932] Generating share/nrn/lib/hoc/netbild/netready.hoc | |
| [145/1932] Generating share/nrn/lib/hoc/nrngui.hoc | |
| [146/1932] Generating share/nrn/lib/hoc/noload.hoc | |
| [147/1932] Generating share/nrn/lib/hoc/pointbsr.hoc | |
| [148/1932] Generating share/nrn/lib/hoc/nrngui1.hoc | |
| [149/1932] Generating share/nrn/lib/hoc/pcchdir.hoc | |
| [150/1932] Generating share/nrn/lib/hoc/prcellstate.hoc | |
| [151/1932] Generating share/nrn/lib/hoc/parcom.hoc | |
| [152/1932] Generating share/nrn/lib/hoc/pointgrp.hoc | |
| [153/1932] Generating share/nrn/lib/hoc/runfit.hoc | |
| [154/1932] Generating share/nrn/lib/hoc/shapebox.hoc | |
| [155/1932] Generating share/nrn/lib/hoc/showmech.hoc | |
| [156/1932] Generating share/nrn/lib/hoc/single.hoc | |
| [157/1932] Generating share/nrn/lib/hoc/pointman.hoc | |
| [158/1932] Generating share/nrn/lib/hoc/single1.hoc | |
| [159/1932] Generating share/nrn/lib/hoc/stdgui.hoc | |
| [160/1932] Generating share/nrn/lib/hoc/stdlib.hoc | |
| [161/1932] Generating share/nrn/lib/hoc/thresh.hoc | |
| [162/1932] Generating share/nrn/lib/hoc/stdrun.hoc | |
| [163/1932] Generating share/nrn/lib/hoc/subiter.hoc | |
| [164/1932] Generating share/nrn/lib/hoc/varmeth1.hoc | |
| [165/1932] Generating share/nrn/lib/hoc/vecwrap.hoc | |
| [166/1932] Generating share/nrn/lib/hoc/vplay.hoc | |
| [167/1932] Generating share/nrn/lib/hocload.sh | |
| [168/1932] Generating share/nrn/lib/prologue.id | |
| [169/1932] Generating share/nrn/lib/hoc/wingroup.hoc | |
| [170/1932] Generating share/nrn/lib/nrn.defaults.in | |
| [171/1932] Generating share/nrn/lib/nrnunits.lib | |
| [172/1932] Generating share/nrn/lib/python/neuron/coreneuron.py | |
| [173/1932] Generating share/nrn/lib/python/neuron/__init__.py | |
| [174/1932] Generating share/nrn/lib/python/neuron/config.py | |
| [175/1932] Generating share/nrn/lib/python/neuron/expect_hocerr.py | |
| [176/1932] Generating share/nrn/lib/python/neuron/gui.py | |
| [177/1932] Generating share/nrn/lib/python/neuron/crxd/__init__.py | |
| [178/1932] Generating share/nrn/lib/python/neuron/doc.py | |
| [179/1932] Generating share/nrn/lib/python/neuron/gui2/config.py | |
| [180/1932] Generating share/nrn/lib/python/neuron/gui2/plotshape.py | |
| [181/1932] Generating share/nrn/lib/python/neuron/gui2/__init__.py | |
| [182/1932] Generating share/nrn/lib/python/neuron/gui2/rangevar.py | |
| [183/1932] Generating share/nrn/lib/python/neuron/gui2/setup_threejs.py | |
| [184/1932] Generating share/nrn/lib/python/neuron/gui2/utilities.py | |
| [185/1932] Generating share/nrn/lib/python/neuron/hclass3.py | |
| [186/1932] Generating share/nrn/lib/python/neuron/neuroml/biophysics.py | |
| [187/1932] Generating share/nrn/lib/python/neuron/neuroml/__init__.py | |
| [188/1932] Generating share/nrn/lib/python/neuron/neuroml/morphml.py | |
| [189/1932] Generating share/nrn/lib/python/neuron/neuroml/rdxml.py | |
| [190/1932] Generating share/nrn/lib/python/neuron/neuroml/neuroml.py | |
| [191/1932] Generating share/nrn/lib/python/neuron/neuroml/xml2nrn.py | |
| [192/1932] Generating share/nrn/lib/python/neuron/nonvint_block_supervisor.py | |
| [193/1932] Generating share/nrn/lib/python/neuron/psection.py | |
| [194/1932] Generating share/nrn/lib/python/neuron/neuroml/metadata.py | |
| [195/1932] Generating share/nrn/lib/python/neuron/rxd/__init__.py | |
| [196/1932] Generating share/nrn/lib/python/neuron/rxd/dimension3.py | |
| [197/1932] Generating share/nrn/lib/python/neuron/rxd/export.py | |
| [198/1932] Generating share/nrn/lib/python/neuron/rxd/generalizedReaction.py | |
| [199/1932] Generating share/nrn/lib/python/neuron/rxd/constants.py | |
| [200/1932] Generating share/nrn/lib/python/neuron/rxd/geometry.py | |
| [201/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/FullJoinMorph.py | |
| [202/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/__init__.py | |
| [203/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/ctng.pyx | |
| [204/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/GeneralizedVoxelization.py | |
| [205/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/graphicsPrimitives.pyx | |
| [206/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/scalarField.py | |
| [207/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/surface.py | |
| [208/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/simplevolume_helper.py | |
| [209/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/surface_a.py | |
| [210/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/surfaces.pyx | |
| [211/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/triangularMesh.py | |
| [212/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/voxelize.py | |
| [213/1932] Generating share/nrn/lib/python/neuron/rxd/geometry3d/voxelize2.py | |
| [214/1932] Generating share/nrn/lib/python/neuron/rxd/gui.py | |
| [215/1932] Generating share/nrn/lib/python/neuron/rxd/multiCompartmentReaction.py | |
| [216/1932] Generating share/nrn/lib/python/neuron/rxd/initializer.py | |
| [217/1932] Generating share/nrn/lib/python/neuron/rxd/node.py | |
| [218/1932] Generating share/nrn/lib/python/neuron/rxd/nodelist.py | |
| [219/1932] Generating share/nrn/lib/python/neuron/rxd/options.py | |
| [220/1932] Generating share/nrn/lib/python/neuron/rxd/rangevar.py | |
| [221/1932] Generating share/nrn/lib/python/neuron/rxd/rate.py | |
| [222/1932] Generating share/nrn/lib/python/neuron/rxd/rxdException.py | |
| [223/1932] Generating share/nrn/lib/python/neuron/rxd/rxd.py | |
| [224/1932] Generating share/nrn/lib/python/neuron/rxd/plugins.py | |
| [225/1932] Generating share/nrn/lib/python/neuron/rxd/reaction.py | |
| [226/1932] Generating share/nrn/lib/python/neuron/rxd/region.py | |
| [227/1932] Generating share/nrn/lib/python/neuron/rxd/rxdsection.py | |
| [228/1932] Generating share/nrn/lib/python/neuron/rxd/rxdmath.py | |
| [229/1932] Generating share/nrn/lib/python/neuron/rxd/section1d.py | |
| [230/1932] Generating share/nrn/lib/python/neuron/rxd/species.py | |
| [231/1932] Generating share/nrn/lib/python/neuron/rxdtests/do_test.py | |
| [232/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/circadian_rhythm.py | |
| [233/1932] Generating share/nrn/lib/python/neuron/rxdtests/readme.txt | |
| [234/1932] Generating share/nrn/lib/python/neuron/rxdtests/run_all.py | |
| [235/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/multicompartment_reactions.py | |
| [236/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/include_flux3d_cvode.py | |
| [237/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/include_flux3d.py | |
| [238/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/pure_diffusion_3d.py | |
| [239/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/pure_diffusion_3d_cvode.py | |
| [240/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/torun.txt | |
| [241/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/IraHH.py | |
| [242/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/c91662.swc | |
| [243/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/ca_pump.py | |
| [244/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/cabuf.py | |
| [245/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/cabuf_fixed_step.py | |
| [246/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_before_sections.py | |
| [247/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_example_cvode.py | |
| [248/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_example.py | |
| [249/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_multi_example_cvode.py | |
| [250/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_include_flux.py | |
| [251/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_multi_example.py | |
| [252/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/pump.mod | |
| [253/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/torun.txt | |
| [254/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh.py | |
| [255/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_include_flux_cvode.py | |
| [256/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_morph.py | |
| [257/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid.py | |
| [258/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_cvode.py | |
| [259/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_param.py | |
| [260/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_param_cvode.py | |
| [261/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/pure_diffusion_hybrid.py | |
| [262/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_change_nthread.py | |
| [263/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/pure_diffusion_hybrid_cvode.py | |
| [264/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_cvode.py | |
| [265/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_cvode_change_nthread.py | |
| [266/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/torun.txt | |
| [267/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/include_flux_cvode.py | |
| [268/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/include_flux.py | |
| [269/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions.py | |
| [270/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_mebrane_mismatch.py | |
| [271/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions_with_v.py | |
| [272/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/pure_diffusion.py | |
| [273/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/pure_diffusion_cvode.py | |
| [274/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions_del.py | |
| [275/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/nodes_update.py | |
| [276/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_null_dest.py | |
| [277/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/react_region_specified.py | |
| [278/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_param_test.py | |
| [279/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/cal2.mod | |
| [280/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_test.py | |
| [281/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/verify_no_initialization_order_issue.py | |
| [282/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/caleak.mod | |
| [283/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/torun.txt | |
| [284/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/torun.txt | |
| [285/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_125_1.py | |
| [286/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/readme.txt | |
| [287/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_tree2_25_5.py | |
| [288/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_25_5.py | |
| [289/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_taper_125_1.py | |
| [290/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_tree2_125_1.py | |
| [291/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_taper_25_5.py | |
| [292/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_tree_125_1.py | |
| [293/1932] Generating share/nrn/lib/python/neuron/sections.py | |
| [294/1932] Generating share/nrn/lib/python/neuron/tests/_subclass.py | |
| [295/1932] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_tree_25_5.py | |
| [296/1932] Generating share/nrn/lib/python/neuron/tests/__init__.py | |
| [297/1932] Generating share/nrn/lib/python/neuron/tests/test_neuron.py | |
| [298/1932] Generating share/nrn/lib/python/neuron/tests/test_rxd.py | |
| [299/1932] Generating share/nrn/lib/python/neuron/tests/test_all.py | |
| [300/1932] Generating share/nrn/lib/python/neuron/tests/test_vector.py | |
| [301/1932] Generating share/nrn/lib/python/neuron/tests/utils/__init__.py | |
| [302/1932] Generating share/nrn/lib/python/neuron/tests/utils/checkresult.py | |
| [303/1932] Generating share/nrn/lib/python/neuron/tests/utils/coreneuron_available.py | |
| [304/1932] Generating share/nrn/lib/python/neuron/units.py | |
| [305/1932] Generating share/nrn/lib/python/neuron/tests/utils/strtobool.py | |
| [306/1932] Generating share/nrn/lib/python/neuron/tests/utils/capture_stdout.py | |
| [307/1932] Generating share/nrn/lib/python/scripts/_README.txt | |
| [308/1932] Generating share/nrn/lib/python/scripts/modlunit | |
| [309/1932] Generating share/nrn/lib/python/scripts/_binwrapper.py | |
| [310/1932] Generating share/nrn/lib/python/scripts/nmodl | |
| [311/1932] Generating share/nrn/lib/python/scripts/mkthreadsafe | |
| [312/1932] Generating share/nrn/lib/python/scripts/idraw | |
| [313/1932] Generating share/nrn/lib/python/scripts/neurondemo | |
| [314/1932] Generating share/nrn/lib/python/scripts/nrniv-core | |
| [315/1932] Generating share/nrn/lib/python/scripts/nrngui | |
| [316/1932] Generating share/nrn/lib/python/scripts/nrniv | |
| [317/1932] Generating share/nrn/lib/python/scripts/nrnivmodl-core | |
| [318/1932] Generating share/nrn/lib/python/scripts/nrnpyenv.sh | |
| [319/1932] Generating share/nrn/lib/python/scripts/sortspike | |
| [320/1932] Generating share/nrn/lib/shape.cm1 | |
| [321/1932] Generating include/bbsavestate.h | |
| [322/1932] Generating share/nrn/lib/python/scripts/nrnivmodl | |
| [323/1932] Generating include/cabvars.h | |
| [324/1932] Generating share/nrn/lib/shape.cm2 | |
| [325/1932] Generating include/backtrace_utils.h | |
| [326/1932] Generating include/crout.hpp | |
| [327/1932] Generating include/crout_thread.hpp | |
| [328/1932] Generating include/errcodes.hpp | |
| [329/1932] Generating include/deflate.hpp | |
| [330/1932] Generating include/euler.hpp | |
| [331/1932] Generating include/dimplic.hpp | |
| [332/1932] Generating include/hoc.h | |
| [333/1932] Generating include/hocdec.h | |
| [334/1932] Generating include/hoc_membf.h | |
| [335/1932] Generating include/euler_thread.hpp | |
| [336/1932] Generating include/hocassrt.h | |
| [337/1932] Generating include/hoclist.h | |
| [338/1932] Generating include/mcran4.h | |
| [339/1932] Generating include/md2redef.h | |
| [340/1932] Generating include/hocgetsym.h | |
| [341/1932] Generating include/hocparse.h | |
| [342/1932] Generating include/mech_api.h | |
| [343/1932] Generating include/md1redef.h | |
| [344/1932] Generating include/membfunc.h | |
| [345/1932] Generating include/memory.hpp | |
| [346/1932] Generating include/membdef.h | |
| [347/1932] Generating include/multicore.h | |
| [348/1932] Generating include/neuron/container/data_handle.hpp | |
| [349/1932] Generating include/multisplit.h | |
| [350/1932] Generating include/neuron/cache/mechanism_range.hpp | |
| [351/1932] Generating include/neuron.h | |
| [352/1932] Generating include/neuron/model_data_fwd.hpp | |
| [353/1932] Generating include/newton.hpp | |
| [354/1932] Generating include/neuron/container/non_owning_soa_identifier.hpp | |
| [355/1932] Generating include/neuronapi.h | |
| [356/1932] Generating include/neuron/container/generic_data_handle.hpp | |
| [357/1932] Generating include/nmodlmutex.h | |
| [358/1932] Generating include/newton_struct.h | |
| [359/1932] Generating include/nrn_ansi.h | |
| [360/1932] Generating include/nrnassrt.h | |
| [361/1932] Generating include/newton_thread.hpp | |
| [362/1932] Generating include/nrncvode.h | |
| [363/1932] Generating include/nrnapi.h | |
| [364/1932] Generating include/nrnisaac.h | |
| [365/1932] Generating include/nrniv_mf.h | |
| [366/1932] Generating include/nrnoc_ml.h | |
| [367/1932] Generating include/nrnmpi.h | |
| [368/1932] Generating include/nrnredef.h | |
| [369/1932] Generating include/nrnmpidec.h | |
| [370/1932] Generating include/nrnran123.h | |
| [371/1932] Generating include/nrnrandom.h | |
| [372/1932] Generating include/nrnversionmacros.h | |
| [373/1932] Generating include/oc_ansi.h | |
| [374/1932] Generating include/ocfunc.h | |
| [375/1932] Generating include/ocmisc.h | |
| [376/1932] Generating include/options.h | |
| [377/1932] Generating include/runge.hpp | |
| [378/1932] Generating include/parse_with_deps.hpp | |
| [379/1932] Generating include/row_view.hpp | |
| [380/1932] Generating include/section_fwd.hpp | |
| [381/1932] Generating include/sparse.hpp | |
| [382/1932] Generating include/simeq.hpp | |
| [383/1932] Generating include/sparse_thread.hpp | |
| [384/1932] Generating include/scoplib.h | |
| [385/1932] Generating include/spmatrix.h | |
| [386/1932] Generating include/ssimplic.hpp | |
| [387/1932] Generating include/ssimplic_thread.hpp | |
| [388/1932] Generating include/spconfig.h | |
| [389/1932] Generating include/treeset.h | |
| [390/1932] Generating include/wrap_sprintf.h | |
| [391/1932] Generating ../../share/coreneuron/enginemech.cpp | |
| [392/1932] Generating ../../share/coreneuron/coreneuron.cpp | |
| [393/1932] Generating ../../share/modfile/exp2syn.mod | |
| [394/1932] Generating ../../share/modfile/expsyn.mod | |
| [395/1932] Generating ../../share/modfile/hh.mod | |
| [396/1932] Generating ../../share/modfile/netstim.mod | |
| [397/1932] Generating ../../share/coreneuron/mod_func.c.pl | |
| [398/1932] Generating ../../share/modfile/passive.mod | |
| [399/1932] Generating ../../share/modfile/pattern.mod | |
| [400/1932] Generating ../../share/modfile/stim.mod | |
| [401/1932] Generating ../../share/modfile/svclmp.mod | |
| [402/1932] Building CXX object src/coreneuron/CMakeFiles/corenrn_mpi.dir/mpi/lib/mpispike.cpp.o | |
| [403/1932] Building CXX object external/nmodl/ext/fmt/CMakeFiles/fmt.dir/src/os.cc.o | |
| [404/1932] Building CXX object src/coreneuron/CMakeFiles/corenrn_mpi.dir/mpi/lib/nrnmpi.cpp.o | |
| [405/1932] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/file_sinks.cpp.o | |
| [406/1932] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/stdout_sinks.cpp.o | |
| [407/1932] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/color_sinks.cpp.o | |
| [408/1932] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/async.cpp.o | |
| [409/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/gpu/nrn_acc_manager.cpp.o | |
| [410/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/global_vars.cpp.o | |
| [411/1932] Building CXX object external/nmodl/ext/fmt/CMakeFiles/fmt.dir/src/format.cc.o | |
| [412/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/main1.cpp.o | |
| [413/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/lfp.cpp.o | |
| [414/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/mem_layout_util.cpp.o | |
| [415/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/mech_report.cpp.o | |
| [416/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/core2nrn_data_return.cpp.o | |
| [417/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/nrn_filehandler.cpp.o | |
| [418/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/mk_mech.cpp.o | |
| [419/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/nrn2core_data_init.cpp.o | |
| [420/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/output_spikes.cpp.o | |
| [421/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/phase1.cpp.o | |
| [422/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/nrn_checkpoint.cpp.o | |
| [423/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/reports/nrnreport.cpp.o | |
| [424/1932] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/spdlog.cpp.o | |
| [425/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/phase3.cpp.o | |
| [426/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/reports/report_event.cpp.o | |
| [427/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/reports/report_handler.cpp.o | |
| [428/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/prcellstate.cpp.o | |
| [429/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/reports/sonata_report_handler.cpp.o | |
| [430/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/reports/report_configuration_parser.cpp.o | |
| [431/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mpi/core/nrnmpi_def_cinc.cpp.o | |
| [432/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/nrn_setup.cpp.o | |
| [433/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/setup_fornetcon.cpp.o | |
| [434/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/capac.cpp.o | |
| [435/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/eion.cpp.o | |
| [436/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/io/phase2.cpp.o | |
| [437/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/mech_mapping.cpp.o | |
| [438/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/patternstim.cpp.o | |
| [439/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/multisend.cpp.o | |
| [440/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/cvodestb.cpp.o | |
| [441/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/permute/balance.cpp.o | |
| [442/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/multisend_setup.cpp.o | |
| [443/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/partrans.cpp.o | |
| [444/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/tqueue.cpp.o | |
| [445/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/netcvode.cpp.o | |
| [446/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mechanism/register_mech.cpp.o | |
| [447/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/permute/cellorder.cpp.o | |
| [448/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/netpar.cpp.o | |
| [449/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/permute/data_layout.cpp.o | |
| [450/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/network/partrans_setup.cpp.o | |
| [451/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/fast_imem.cpp.o | |
| [452/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/permute/cellorder2.cpp.o | |
| [453/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/permute/cellorder1.cpp.o | |
| [454/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/fadvance_core.cpp.o | |
| [455/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/scopmath/abort.cpp.o | |
| [456/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/ivocvect.cpp.o | |
| [457/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/solve_core.cpp.o | |
| [458/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/scopmath/newton_thread.cpp.o | |
| [459/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/finitialize.cpp.o | |
| [460/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/permute/node_permute.cpp.o | |
| [461/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/progressbar/progressbar.cpp.o | |
| [462/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/treeset_core.cpp.o | |
| [463/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/memory.cpp.o | |
| [464/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/lpt.cpp.o | |
| [465/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/string_utils.cpp.o | |
| [466/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/sim/multicore.cpp.o | |
| [467/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/memory_utils.cpp.o | |
| [468/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrntimeout.cpp.o | |
| [469/1932] Linking CXX static library lib/libfmt.a | |
| [470/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrn_stats.cpp.o | |
| [471/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrnoc_aux.cpp.o | |
| [472/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/__/__/coreneuron/config/config.cpp.o | |
| [473/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/utils.cpp.o | |
| [474/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/randoms/nrnran123.cpp.o | |
| [475/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/vrecord.cpp.o | |
| [476/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mpi/core/resolve.cpp.o | |
| [477/1932] -- NMODL : GENERATING AST CLASSES WITH PYTHON GENERATOR! -- | |
| [478/1932] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/nmodl_printer.cpp.o | |
| [479/1932] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/blame.cpp.o | |
| [480/1932] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/code_printer.cpp.o | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.cpp:8: | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.hpp:17: | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/ext/fmt/include/fmt/format.h:41: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/memory:682: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/shared_ptr.h:25: | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:57:5: warning: delete called on 'nmodl::utils::Blame' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor] | |
| delete __ptr; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:318:7: note: in instantiation of member function 'std::default_delete<nmodl::utils::Blame>::operator()' requested here | |
| __ptr_.second()(__tmp); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:272:19: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::reset' requested here | |
| ~unique_ptr() { reset(); } | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.cpp:115:26: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::~unique_ptr' requested here | |
| auto blame_printer = utils::make_blame(blame_line); | |
| ^ | |
| 1 warning generated. | |
| [481/1932] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/cfg.cpp.o | |
| [482/1932] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/common_utils.cpp.o | |
| [483/1932] -- NMODL : GENERATING VERBATIM PARSER WITH BISON! -- | |
| ../../../../../external/nmodl/src/parser/verbatim.yy:29.1-24: warning: deprecated directive: '%name-prefix "Verbatim_"', use '%define api.prefix {Verbatim_}' [-Wdeprecated] | |
| 29 | %name-prefix "Verbatim_" | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.prefix {Verbatim_} | |
| ../../../../../external/nmodl/src/parser/verbatim.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
| [484/1932] -- NMODL : GENERATING DIFFERENTIAL EQUATION PARSER WITH BISON! -- | |
| ../../../../../external/nmodl/src/parser/diffeq.yy:56.1-40: warning: deprecated directive: '%define parser_class_name {DiffeqParser}', use '%define api.parser.class {DiffeqParser}' [-Wdeprecated] | |
| 56 | %define parser_class_name {DiffeqParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {DiffeqParser} | |
| ../../../../../external/nmodl/src/parser/diffeq.yy: warning: 2 shift/reduce conflicts [-Wconflicts-sr] | |
| ../../../../../external/nmodl/src/parser/diffeq.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| ../../../../../external/nmodl/src/parser/diffeq.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
| [485/1932] Linking CXX static library lib/libspdlog.a | |
| [486/1932] -- NMODL : GENERATING UNIT PARSER WITH BISON! -- | |
| ../../../../../external/nmodl/src/parser/unit.yy:49.1-38: warning: deprecated directive: '%define parser_class_name {UnitParser}', use '%define api.parser.class {UnitParser}' [-Wdeprecated] | |
| 49 | %define parser_class_name {UnitParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {UnitParser} | |
| ../../../../../external/nmodl/src/parser/unit.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
| [487/1932] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/file_library.cpp.o | |
| [488/1932] -- NMODL : GENERATING C (11) PARSER WITH BISON! -- | |
| ../../../../../external/nmodl/src/parser/c11.yy:52.1-35: warning: deprecated directive: '%define parser_class_name {CParser}', use '%define api.parser.class {CParser}' [-Wdeprecated] | |
| 52 | %define parser_class_name {CParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {CParser} | |
| ../../../../../external/nmodl/src/parser/c11.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
| [489/1932] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/string_utils.cpp.o | |
| [490/1932] Generating ../../../../lib/nmodl/__init__.py | |
| [491/1932] Generating ../../../../lib/nmodl/_binwrapper.py | |
| [492/1932] Generating ../../../../lib/nmodl/ast.py | |
| [493/1932] Generating ../../../../lib/nmodl/dsl.py | |
| [494/1932] Generating ../../../../lib/nmodl/ode.py | |
| [495/1932] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/perf_stat.cpp.o | |
| [496/1932] Generating ../../../../lib/nmodl/symtab.py | |
| [497/1932] Generating ../../../../lib/nmodl/visitor.py | |
| [498/1932] Generating ../../../../include/newton/newton.hpp | |
| [499/1932] Generating ../../../../include/crout/crout.hpp | |
| [500/1932] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/table_data.cpp.o | |
| [501/1932] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/__/config/config.cpp.o | |
| [502/1932] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spalloc.cpp.o | |
| [503/1932] -- NMODL : GENERATING NMODL_CORE PARSER WITH BISON! -- | |
| ../../../../../external/nmodl/src/parser/nmodl.yy:64.1-39: warning: deprecated directive: '%define parser_class_name {NmodlParser}', use '%define api.parser.class {NmodlParser}' [-Wdeprecated] | |
| 64 | %define parser_class_name {NmodlParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {NmodlParser} | |
| ../../../../../external/nmodl/src/parser/nmodl.yy: warning: 3 shift/reduce conflicts [-Wconflicts-sr] | |
| ../../../../../external/nmodl/src/parser/nmodl.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| ../../../../../external/nmodl/src/parser/nmodl.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
| [504/1932] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spbuild.cpp.o | |
| [505/1932] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spoutput.cpp.o | |
| [506/1932] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spfactor.cpp.o | |
| [507/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/ACG.cpp.o | |
| [508/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Binomial.cpp.o | |
| [509/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/DiscUnif.cpp.o | |
| [510/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Erlang.cpp.o | |
| [511/1932] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spsolve.cpp.o | |
| [512/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Geom.cpp.o | |
| [513/1932] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/sputils.cpp.o | |
| [514/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/HypGeom.cpp.o | |
| [515/1932] Linking CXX static library lib/libsparse13.a | |
| [516/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/isaac64.cpp.o | |
| [517/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Isaac64RNG.cpp.o | |
| [518/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/LogNorm.cpp.o | |
| [519/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/MCellRan4RNG.cpp.o | |
| [520/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/mcran4.cpp.o | |
| [521/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/MLCG.cpp.o | |
| [522/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/NegExp.cpp.o | |
| [523/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Normal.cpp.o | |
| [524/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnisaac.cpp.o | |
| [525/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Poisson.cpp.o | |
| [526/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Rand.cpp.o | |
| [527/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Random.cpp.o | |
| [528/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RndInt.cpp.o | |
| [529/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RNG.cpp.o | |
| [530/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Uniform.cpp.o | |
| [531/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Weibull.cpp.o | |
| [532/1932] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o | |
| [533/1932] [FLEX][modlunitlexer] Building scanner with flex 2.6.4 | |
| [534/1932] Linking CXX shared library lib/librxdmath.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| [535/1932] [BISON][nocmodlparser] Building parser with bison 3.8.2 | |
| ../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| [536/1932] [FLEX][nocmodllexer] Building scanner with flex 2.6.4 | |
| [537/1932] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnran123.cpp.o | |
| [538/1932] Linking CXX static library lib/libnrngnu.a | |
| [539/1932] [BISON][modlunitparser] Building parser with bison 3.8.2 | |
| [540/1932] [BISON][ocparser] Building parser with bison 3.8.2 | |
| ../src/oc/parse.ypp: warning: 108 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| [541/1932] [BISON][nocmodlparser] Building parser with bison 3.8.2 | |
| ../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| [542/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/consist.cpp.o | |
| [543/1932] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/json_printer.cpp.o | |
| [544/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/init.cpp.o | |
| [545/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/declare.cpp.o | |
| [546/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/io.cpp.o | |
| [547/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/list.cpp.o | |
| [548/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/kinunit.cpp.o | |
| [549/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/model.cpp.o | |
| [550/1932] cd /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h | |
| fatal: No names found, cannot describe anything. | |
| [551/1932] Building CXX object external/nmodl/src/pybind/CMakeFiles/pyembed.dir/pyembed.cpp.o | |
| [552/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/nrnunit.cpp.o | |
| [553/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/passn.cpp.o | |
| [554/1932] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/corenrn_parameters.cpp.o | |
| [555/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/symbol.cpp.o | |
| [556/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units1.cpp.o | |
| [557/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/version.cpp.o | |
| [558/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units.cpp.o | |
| [559/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/lex.cpp.o | |
| [560/1932] Linking CXX static library lib/libcoreneuron-core.a | |
| [561/1932] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/logger.cpp.o | |
| [562/1932] Linking CXX static library lib/libutil.a | |
| [563/1932] -- NMODL : GENERATING NMODL LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/nmodl.ll:503: warning, -s option given but default rule can be matched | |
| [564/1932] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! -- | |
| [565/1932] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/diffeq.ll:100: warning, -s option given but default rule can be matched | |
| [566/1932] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/parse1.cpp.o | |
| [567/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/consist.cpp.o | |
| [568/1932] -- NMODL : GENERATING C(11) LEXER WITH FLEX! -- | |
| [569/1932] -- NMODL : GENERATING UNIT LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched | |
| [570/1932] Linking CXX static library lib/libpyembed.a | |
| [571/1932] Linking CXX executable bin/modlunit | |
| [572/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/discrete.cpp.o | |
| [573/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/deriv.cpp.o | |
| [574/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/init.cpp.o | |
| [575/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/kinetic.cpp.o | |
| [576/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/io.cpp.o | |
| [577/1932] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_transform_visitor.cpp.o | |
| [578/1932] Building CXX object external/nmodl/src/pybind/CMakeFiles/pywrapper.dir/wrapper.cpp.o | |
| [579/1932] Building CXX object src/nrnpython/CMakeFiles/nanobind.dir/__/__/external/nanobind/src/nb_combined.cpp.o | |
| [580/1932] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_acc_visitor.cpp.o | |
| [581/1932] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_info.cpp.o | |
| [582/1932] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_compatibility_visitor.cpp.o | |
| [583/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/modtoken.cpp.o | |
| [584/1932] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_utils.cpp.o | |
| [585/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/verbatim_lexer.cpp.o | |
| [586/1932] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_helper_visitor.cpp.o | |
| [587/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/token_mapping.cpp.o | |
| [588/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/diffeq_base_lexer.cpp.o | |
| [589/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_utils.cpp.o | |
| [590/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/unit_base_lexer.cpp.o | |
| [591/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/c11_base_lexer.cpp.o | |
| [592/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_driver.cpp.o | |
| [593/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_base_lexer.cpp.o | |
| [594/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_context.cpp.o | |
| [595/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/verbatim_parser.cpp.o | |
| [596/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit_driver.cpp.o | |
| [597/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c11_driver.cpp.o | |
| [598/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq/diffeq_parser.cpp.o | |
| [599/1932] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_neuron_cpp_visitor.cpp.o | |
| [600/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c/c11_parser.cpp.o | |
| [601/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl_driver.cpp.o | |
| [602/1932] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_cpp_visitor.cpp.o | |
| [603/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit/unit_parser.cpp.o | |
| [604/1932] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol_properties.cpp.o | |
| [605/1932] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol.cpp.o | |
| [606/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/units/units.cpp.o | |
| [607/1932] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_coreneuron_cpp_visitor.cpp.o | |
| [608/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/after_cvode_to_cnexp_visitor.cpp.o | |
| [609/1932] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol_table.cpp.o | |
| [610/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/function_callpath_visitor.cpp.o | |
| [611/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/global_var_visitor.cpp.o | |
| [612/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/constant_folder_visitor.cpp.o | |
| [613/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/implicit_argument_visitor.cpp.o | |
| [614/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/indexedname_visitor.cpp.o | |
| [615/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/local_to_assigned_visitor.cpp.o | |
| [616/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/defuse_analyze_visitor.cpp.o | |
| [617/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/index_remover.cpp.o | |
| [618/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl/nmodl_parser.cpp.o | |
| [619/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/local_var_rename_visitor.cpp.o | |
| [620/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/loop_unroll_visitor.cpp.o | |
| [621/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/localize_visitor.cpp.o | |
| [622/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/perf_visitor.cpp.o | |
| [623/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/neuron_solve_visitor.cpp.o | |
| [624/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/inline_visitor.cpp.o | |
| [625/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/semantic_analysis_visitor.cpp.o | |
| [626/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/kinetic_block_visitor.cpp.o | |
| [627/1932] Building CXX object external/nmodl/src/CMakeFiles/nmodl.dir/main.cpp.o | |
| [628/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/rename_visitor.cpp.o | |
| [629/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/solve_block_visitor.cpp.o | |
| [630/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/var_usage_visitor.cpp.o | |
| [631/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_visitor.cpp.o | |
| [632/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/units_visitor.cpp.o | |
| [633/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/steadystate_visitor.cpp.o | |
| [634/1932] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/ast/ast.cpp.o | |
| [635/1932] Linking CXX static library lib/liblexer.a | |
| [636/1932] Linking CXX static library lib/libsymtab.a | |
| [637/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_var_rename_visitor.cpp.o | |
| [638/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/ast_visitor.cpp.o | |
| [639/1932] Linking CXX static library lib/libpywrapper.a | |
| [640/1932] Linking CXX static library lib/libnanobind.a | |
| [641/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/list.cpp.o | |
| [642/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_replace_solutions_visitor.cpp.o | |
| [643/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_conductance_visitor.cpp.o | |
| [644/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/checkparent_visitor.cpp.o | |
| [645/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/lookup_visitor.cpp.o | |
| [646/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/noccout.cpp.o | |
| [647/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/json_visitor.cpp.o | |
| [648/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/parsact.cpp.o | |
| [649/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/netrec_discon.cpp.o | |
| [650/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/simultan.cpp.o | |
| [651/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/visitor_utils.cpp.o | |
| [652/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/nmodl_visitor.cpp.o | |
| [653/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/solve.cpp.o | |
| [654/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/modlunit/units.cpp.o | |
| [655/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/symbol.cpp.o | |
| [656/1932] Generating ../../share/nrn/nrnmain.cpp | |
| [657/1932] Generating ../../include/nrnmpiuse.h | |
| [658/1932] Generating ../oc/hocusr.h | |
| [659/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/version.cpp.o | |
| [660/1932] Generating ../../include/nrncvode/nrnneosm.h | |
| [661/1932] cd /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/build/src/nrniv && true | |
| [662/1932] Generating ../../include/nrnconf.h | |
| [663/1932] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/catch_chronometer.cpp.o | |
| [664/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/nocpout.cpp.o | |
| [665/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o | |
| [666/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_solver_visitor.cpp.o | |
| [667/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o | |
| [668/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o | |
| [669/1932] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/symtab_visitor.cpp.o | |
| [670/1932] Linking CXX static library lib/libvisitor.a | |
| [671/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_nrn.cpp.o | |
| FAILED: src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_nrn.cpp.o | |
| ccache /usr/bin/g++ -DCORENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_ASAN_ENABLED -DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/.. -I/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/../oc -I/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/../nrnoc -I/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/../ivoc -I/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/../nrniv -I/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/../nrnmpi -I/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/../ivos -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -I/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/eigen -I/Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/build/src/nrniv/oc_generated -isystem /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/external/nanobind/include -O1 -g -openmp-simd -std=c++17 -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -fPIC -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -MD -MT src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_nrn.cpp.o -MF src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_nrn.cpp.o.d -o src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_nrn.cpp.o -c /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(_object *&, _object *&))(_object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(_object *, _object *), _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:203:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(_object *, _object *), Args = <_object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPySecObj_contains, sec, obj); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(_object *&, _object *&))(_object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPySecObj *&, _object *&, _object *&))(NPySecObj *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPySecObj *, _object *, _object *), NPySecObj *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:427:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPySecObj *, _object *, _object *), Args = <NPySecObj *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPySecObj_init, self, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPySecObj *&, _object *&, _object *&))(NPySecObj *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPyAllSegOfSecIter *&, _object *&, _object *&))(NPyAllSegOfSecIter *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPyAllSegOfSecIter *, _object *, _object *), NPyAllSegOfSecIter *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:445:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPyAllSegOfSecIter *, _object *, _object *), Args = <NPyAllSegOfSecIter *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPyAllSegOfSecIter_init, self, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPyAllSegOfSecIter *&, _object *&, _object *&))(NPyAllSegOfSecIter *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_typeobject *&, _object *&, _object *&))(_typeobject *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_typeobject *, _object *, _object *), _typeobject *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:462:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_typeobject *, _object *, _object *), Args = <_typeobject *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPySecObj_new, type, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_typeobject *&, _object *&, _object *&))(_typeobject *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, _object *&, _object *&))(_object *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, _object *, _object *), _object *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:487:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, _object *, _object *), Args = <_object *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(nrnpy_newsecobj, self, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, _object *&, _object *&))(_object *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPySegObj *&, _object *&, _object *&))(NPySegObj *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPySegObj *, _object *, _object *), NPySegObj *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:575:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPySegObj *, _object *, _object *), Args = <NPySegObj *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPySegObj_init, self, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPySegObj *&, _object *&, _object *&))(NPySegObj *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:617:8: error: use of undeclared identifier 'nb' | |
| inline nb::object obj_get_segment(nb::object py_obj) { | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:617:35: error: use of undeclared identifier 'nb' | |
| inline nb::object obj_get_segment(nb::object py_obj) { | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:619:22: error: use of undeclared identifier 'obj' | |
| if (PyList_Check(obj)) { | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:620:9: error: use of undeclared identifier 'nb' | |
| nb::list obj_list = std::move(py_obj); | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:641:23: error: use of undeclared identifier 'nb' | |
| auto py_obj_seg = nb::borrow(nrnpy_hoc2pyobject(o)); | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPyMechObj *&, _object *&, _object *&))(NPyMechObj *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPyMechObj *, _object *, _object *), NPyMechObj *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:669:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPyMechObj *, _object *, _object *), Args = <NPyMechObj *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPyMechObj_init, self, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPyMechObj *&, _object *&, _object *&))(NPyMechObj *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPyRangeVar *&, _object *&, _object *&))(NPyRangeVar *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPyRangeVar *, _object *, _object *), NPyRangeVar *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:677:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPyRangeVar *, _object *, _object *), Args = <NPyRangeVar *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPyRangeVar_init, self, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPyRangeVar *&, _object *&, _object *&))(NPyRangeVar *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *&))(NPySecObj *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *), NPySecObj *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:687:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *), Args = <NPySecObj *&>] | |
| return nrn::convert_cxx_exceptions(NPySecObj_name, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *&))(NPySecObj *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *&, _object *&))(NPySecObj *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *, _object *), NPySecObj *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:734:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *, _object *), Args = <NPySecObj *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPySecObj_pt3dclear, self, args); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *&, _object *&))(NPySecObj *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&))(_object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *), _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:954:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *), Args = <_object *&>] | |
| return nrn::convert_cxx_exceptions(pysec_repr, p); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&))(_object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, _object *), _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1007:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, _object *), Args = <_object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(nrnpy_set_psection, self, args); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *const &))(NPySecObj *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *), NPySecObj *const &>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1157:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *), Args = <NPySecObj *const &>] | |
| return nrn::convert_cxx_exceptions(pysec_children, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *const &))(NPySecObj *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<long (*(_object *&))(_object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<long (*)(_object *), _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1225:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = long (*)(_object *), Args = <_object *&>] | |
| return nrn::convert_cxx_exceptions(pysec_hash, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<long (*(_object *&))(_object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegObj *&, _object *&, int &))(NPySegObj *, _object *, int)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegObj *, _object *, int), NPySegObj *&, _object *&, int &>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1251:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegObj *, _object *, int), Args = <NPySegObj *&, _object *&, int &>] | |
| return nrn::convert_cxx_exceptions(pyseg_richcmp, self, other, op); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegObj *&, _object *&, int &))(NPySegObj *, _object *, int)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *&, _object *&, int &))(NPySecObj *, _object *, int)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *, _object *, int), NPySecObj *&, _object *&, int &>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1274:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *, _object *, int), Args = <NPySecObj *&, _object *&, int &>] | |
| return nrn::convert_cxx_exceptions(pysec_richcmp, self, other, op); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *&, _object *&, int &))(NPySecObj *, _object *, int)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechObj *&))(NPyMechObj *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechObj *), NPyMechObj *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1308:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechObj *), Args = <NPyMechObj *&>] | |
| return nrn::convert_cxx_exceptions(NPyMechObj_name, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechObj *&))(NPyMechObj *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechFunc *&))(NPyMechFunc *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechFunc *), NPyMechFunc *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1321:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechFunc *), Args = <NPyMechFunc *&>] | |
| return nrn::convert_cxx_exceptions(NPyMechFunc_name, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechFunc *&))(NPyMechFunc *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechFunc *&, _object *&))(NPyMechFunc *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechFunc *, _object *), NPyMechFunc *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1351:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechFunc *, _object *), Args = <NPyMechFunc *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPyMechFunc_call, self, args); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechFunc *&, _object *&))(NPyMechFunc *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyRangeVar *&))(NPyRangeVar *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyRangeVar *), NPyRangeVar *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1430:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyRangeVar *), Args = <NPyRangeVar *&>] | |
| return nrn::convert_cxx_exceptions(NPyRangeVar_name, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyRangeVar *&))(NPyRangeVar *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyAllSegOfSecIter *&))(NPyAllSegOfSecIter *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyAllSegOfSecIter *), NPyAllSegOfSecIter *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1640:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyAllSegOfSecIter *), Args = <NPyAllSegOfSecIter *&>] | |
| return nrn::convert_cxx_exceptions(allseg_of_sec_iter, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyAllSegOfSecIter *&))(NPyAllSegOfSecIter *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegOfSecIter *&))(NPySegOfSecIter *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegOfSecIter *), NPySegOfSecIter *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1692:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegOfSecIter *), Args = <NPySegOfSecIter *&>] | |
| return nrn::convert_cxx_exceptions(seg_of_sec_next, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegOfSecIter *&))(NPySegOfSecIter *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegObj *&))(NPySegObj *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegObj *), NPySegObj *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1713:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegObj *), Args = <NPySegObj *&>] | |
| return nrn::convert_cxx_exceptions(seg_point_processes, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegObj *&))(NPySegObj *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechOfSegIter *&))(NPyMechOfSegIter *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechOfSegIter *), NPyMechOfSegIter *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2137:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechOfSegIter *), Args = <NPyMechOfSegIter *&>] | |
| return nrn::convert_cxx_exceptions(mech_of_seg_next, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechOfSegIter *&))(NPyMechOfSegIter *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyVarOfMechIter *&))(NPyVarOfMechIter *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyVarOfMechIter *), NPyVarOfMechIter *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2177:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyVarOfMechIter *), Args = <NPyVarOfMechIter *&>] | |
| return nrn::convert_cxx_exceptions(var_of_mech_next, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyVarOfMechIter *&))(NPyVarOfMechIter *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegObj *&, _object *&))(NPySegObj *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegObj *, _object *), NPySegObj *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2294:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegObj *, _object *), Args = <NPySegObj *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(segment_getattro, self, pyname); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegObj *&, _object *&))(NPySegObj *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechObj *&, _object *&))(NPyMechObj *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechObj *, _object *), NPyMechObj *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2538:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechObj *, _object *), Args = <NPyMechObj *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(mech_getattro, self, pyname); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechObj *&, _object *&))(NPyMechObj *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, long &))(_object *, long)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, long), _object *&, long &>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2684:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, long), Args = <_object *&, long &>] | |
| return nrn::convert_cxx_exceptions(rv_getitem, self, ix); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, long &))(_object *, long)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(_object *&, long &, _object *&))(_object *, long, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(_object *, long, _object *), _object *&, long &, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2732:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(_object *, long, _object *), Args = <_object *&, long &, _object *&>] | |
| return nrn::convert_cxx_exceptions(rv_setitem, self, ix, value); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(_object *&, long &, _object *&))(_object *, long, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| 29 warnings and 5 errors generated. | |
| [672/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpython.cpp.o | |
| [673/1932] Linking CXX static library lib/libcodegen.a | |
| [674/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_p2h.cpp.o | |
| [675/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_intracellular.cpp.o | |
| [676/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/grids.cpp.o | |
| [677/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_extracellular.cpp.o | |
| [678/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_hoc.cpp.o | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:9: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, _object *), _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:169:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, _object *), Args = <_object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(nrnexec, self, args); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:9: | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(PyHocObject *&, _object *&))(PyHocObject *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(PyHocObject *, _object *), PyHocObject *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/2/P220112/J1337520/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:2458:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(PyHocObject *, _object *), Args = <PyHocObject *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(hocobj_same, pself, args); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(PyHocObject *&, _object *&))(PyHocObject *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| 2 warnings generated. | |
| [679/1932] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd.cpp.o | |
| [680/1932] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/modl.cpp.o | |
| ninja: build stopped: subcommand failed. | |
| section_end:1720017604:step_script [0Ksection_start:1720017604:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1720017604:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1720017480:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720017480:resolve_secrets [0Ksection_start:1720017480:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3868869508, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 220112, build ref , job ID 1337521 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1337521_PROD_P2160_CP6_C1 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2285426 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J1337521_PROD_P2160_CP6_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112 --ntasks=1 --jobid=2285426 --cpus-per-task=6 --mem=30750M | |
| section_end:1720017482:prepare_executor [0Ksection_start:1720017482:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n6 via bbpv1.epfl.ch... | |
| section_end:1720017486:prepare_script [0Ksection_start:1720017486:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720017487:get_sources [0Ksection_start:1720017487:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| # special case for SPACK_DEPLOYMENT_SUFFIX=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| is_deployment_suffix = ref_type == 'suffix' and m.group(1).lower() == 'spack_deployment' | |
| if ref_type not in {'branch', 'tag', 'ref'} and not is_deployment_suffix: return | |
| print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3)) | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m | |
| [32;1m$ else[0;m | |
| [32;1m$ cat input_variables.env[0;m | |
| [32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m | |
| [32;1m$ set -o allexport[0;m | |
| [32;1m$ . input_variables.env[0;m | |
| [32;1m$ set +o allexport[0;m | |
| [32;1m$ unset MODULEPATH[0;m | |
| [32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m | |
| [32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m | |
| [32;1m$ echo Preparing to clone Spack into ${PWD}[0;m | |
| Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220112/J1337521 | |
| [32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ module load unstable git[0;m | |
| [32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Updating files: 2% (322/11295) Updating files: 3% (339/11295) Updating files: 4% (452/11295) Updating files: 5% (565/11295) Updating files: 6% (678/11295) Updating files: 6% (702/11295) Updating files: 7% (791/11295) Updating files: 8% (904/11295) Updating files: 9% (1017/11295) Updating files: 10% (1130/11295) Updating files: 10% (1150/11295) Updating files: 11% (1243/11295) Updating files: 12% (1356/11295) Updating files: 12% (1465/11295) Updating files: 13% (1469/11295) Updating files: 14% (1582/11295) Updating files: 15% (1695/11295) Updating files: 15% (1713/11295) Updating files: 16% (1808/11295) Updating files: 16% (1916/11295) Updating files: 17% (1921/11295) Updating files: 18% (2034/11295) Updating files: 19% (2147/11295) Updating files: 19% (2161/11295) Updating files: 20% (2259/11295) Updating files: 21% (2372/11295) Updating files: 21% (2439/11295) Updating files: 22% (2485/11295) Updating files: 23% (2598/11295) Updating files: 23% (2696/11295) Updating files: 24% (2711/11295) Updating files: 25% (2824/11295) Updating files: 26% (2937/11295) Updating files: 26% (2945/11295) Updating files: 27% (3050/11295) Updating files: 28% (3163/11295) Updating files: 28% (3202/11295) Updating files: 29% (3276/11295) Updating files: 30% (3389/11295) Updating files: 30% (3465/11295) Updating files: 31% (3502/11295) Updating files: 32% (3615/11295) Updating files: 33% (3728/11295) Updating files: 33% (3734/11295) Updating files: 34% (3841/11295) Updating files: 35% (3954/11295) Updating files: 35% (4008/11295) Updating files: 36% (4067/11295) Updating files: 37% (4180/11295) Updating files: 37% (4267/11295) Updating files: 38% (4293/11295) Updating files: 39% (4406/11295) Updating files: 39% (4500/11295) Updating files: 40% (4518/11295) Updating files: 41% (4631/11295) Updating files: 42% (4744/11295) Updating files: 42% (4749/11295) Updating files: 43% (4857/11295) Updating files: 44% (4970/11295) Updating files: 44% (5024/11295) Updating files: 45% (5083/11295) Updating files: 46% (5196/11295) Updating files: 46% (5270/11295) Updating files: 47% (5309/11295) Updating files: 48% (5422/11295) Updating files: 49% (5535/11295) Updating files: 49% (5543/11295) Updating files: 50% (5648/11295) Updating files: 51% (5761/11295) Updating files: 51% (5801/11295) Updating files: 52% (5874/11295) Updating files: 53% (5987/11295) Updating files: 53% (6067/11295) Updating files: 54% (6100/11295) Updating files: 55% (6213/11295) Updating files: 55% (6307/11295) Updating files: 56% (6326/11295) Updating files: 57% (6439/11295) Updating files: 57% (6531/11295) Updating files: 58% (6552/11295) Updating files: 59% (6665/11295) Updating files: 59% (6767/11295) Updating files: 60% (6777/11295) Updating files: 61% (6890/11295) Updating files: 61% (6973/11295) Updating files: 62% (7003/11295) Updating files: 63% (7116/11295) Updating files: 63% (7188/11295) Updating files: 64% (7229/11295) Updating files: 65% (7342/11295) Updating files: 65% (7422/11295) Updating files: 66% (7455/11295) Updating files: 67% (7568/11295) Updating files: 67% (7648/11295) Updating files: 68% (7681/11295) Updating files: 69% (7794/11295) Updating files: 69% (7859/11295) Updating files: 70% (7907/11295) Updating files: 71% (8020/11295) Updating files: 71% (8084/11295) Updating files: 72% (8133/11295) Updating files: 73% (8246/11295) Updating files: 73% (8294/11295) Updating files: 74% (8359/11295) Updating files: 75% (8472/11295) Updating files: 75% (8533/11295) Updating files: 76% (8585/11295) Updating files: 77% (8698/11295) Updating files: 77% (8776/11295) Updating files: 78% (8811/11295) Updating files: 79% (8924/11295) Updating files: 79% (8989/11295) Updating files: 80% (9036/11295) Updating files: 81% (9149/11295) Updating files: 81% (9211/11295) Updating files: 82% (9262/11295) Updating files: 83% (9375/11295) Updating files: 83% (9442/11295) Updating files: 84% (9488/11295) Updating files: 85% (9601/11295) Updating files: 85% (9662/11295) Updating files: 86% (9714/11295) Updating files: 87% (9827/11295) Updating files: 87% (9873/11295) Updating files: 88% (9940/11295) Updating files: 89% (10053/11295) Updating files: 89% (10157/11295) Updating files: 90% (10166/11295) Updating files: 91% (10279/11295) Updating files: 92% (10392/11295) Updating files: 92% (10423/11295) Updating files: 93% (10505/11295) Updating files: 94% (10618/11295) Updating files: 94% (10654/11295) Updating files: 95% (10731/11295) Updating files: 96% (10844/11295) Updating files: 96% (10884/11295) Updating files: 97% (10957/11295) Updating files: 98% (11070/11295) Updating files: 98% (11151/11295) Updating files: 99% (11183/11295) Updating files: 100% (11295/11295) Updating files: 100% (11295/11295), done. | |
| [32;1m$ export SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ export SPACK_RESOLVED_COMMIT=$(cd "${SPACK_ROOT}" && git rev-parse HEAD)[0;m | |
| [32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m | |
| [32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_RESOLVED_COMMIT=${SPACK_RESOLVED_COMMIT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220112/J1337521_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack ${SPACK_EXTRA_FLAGS} configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env[0;m | |
| spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED BLUECONFIGS --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=enh/leite/py-segment-nanobind SPACK_RESOLVED_COMMIT=2856bae2dabc30357ab311f452f86ae5a5c88041 GITLAB_PIPELINES_BRANCH=main NEURON_COMMIT=fd8a070a41f783c9c328b53ea3bdbad130bbba8f NMODL_BRANCH=master LIBSONATA_REPORT_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master BLUECONFIGS_BRANCH=main | |
| ==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=enh/leite/py-segment-nanobind | |
| ==> SPACK_RESOLVED: ignoring SPACK_RESOLVED_COMMIT=2856bae2dabc30357ab311f452f86ae5a5c88041 | |
| ==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main | |
| ==> SPACK: ignoring SPACK_BRANCH=develop | |
| ==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master | |
| ==> BLUECONFIGS: ignoring BLUECONFIGS_BRANCH=main | |
| ==> nmodl: resolved branch master to 7beaee9751e233f775a177c819d727abde7e4495 | |
| ==> libsonata-report: resolved branch master to 5602aadfa710d6766ce23cd151a1855190271bd8 | |
| ==> adding config: packages:neuron:require: '@git.fd8a070a41f783c9c328b53ea3bdbad130bbba8f=develop' | |
| ==> adding config: packages:nmodl:require: '@git.7beaee9751e233f775a177c819d727abde7e4495=develop' | |
| ==> adding config: packages:libsonata-report:require: '@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop' | |
| [32;1m$ (cd "${SPACK_ROOT}" && git diff)[0;m | |
| [32;1m$ cat commit-mapping.env[0;m | |
| NEURON_COMMIT=fd8a070a41f783c9c328b53ea3bdbad130bbba8f | |
| NMODL_COMMIT=7beaee9751e233f775a177c819d727abde7e4495 | |
| LIBSONATA_REPORT_COMMIT=5602aadfa710d6766ce23cd151a1855190271bd8 | |
| [32;1m$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env[0;m | |
| [32;1m$ cat commit-mapping.env >> spack_clone_variables.env[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -IL ninja[0;m | |
| ==> Warning: Expected user 904556 to own /nvme/bbpcihpcproj12, but it is owned by 0 | |
| ==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce.spec.json | |
| ==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/patchelf-0.18.0/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce.spack | |
| ==> Installing "patchelf@=0.18.0%gcc@=10.2.1 ldflags="-static-libstdc++ -static-libgcc" build_system=autotools arch=linux-centos7-x86_64" from a buildcache | |
| ==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spec.json | |
| ==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spack | |
| ==> Installing "clingo-bootstrap@=spack%gcc@=10.2.1~docs+ipo+optimized+python+static_libstdcpp build_system=cmake build_type=Release generator=make patches=bebb819,ec99431 arch=linux-centos7-x86_64" from a buildcache | |
| Input spec | |
| -------------------------------- | |
| - ninja | |
| Concretized | |
| -------------------------------- | |
| [e] omn6mm4a3zsbpbkptvdwxs6kkrh6yafw ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [32;1m$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> spack_clone_variables.env[0;m | |
| section_end:1720017797:step_script [0Ksection_start:1720017797:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=132546 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| commit-mapping.env: found 1 matching files and directories[0;m | |
| input_variables.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1337521 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=132569 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1337521 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1720017798:upload_artifacts_on_success [0Ksection_start:1720017798:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1720017799:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Log was not fetched because job had status: skipped |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Log was not fetched because job had status: skipped |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Log was not fetched because job had status: skipped |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Log was not fetched because job had status: skipped |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment