Created
June 14, 2024 07:01
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/nmodl/-/pipelines/216851 (:no_entry:) running on GitHub PR BlueBrain/nmodl#1321.
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1718345402:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1718345402:resolve_secrets [0Ksection_start:1718345402:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3798635667, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nmodl | |
Pipeline ID 216851, build ref , job ID 1318674 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216851, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J1318674_PROD_P30_CP0_C0 | |
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 2250365 | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J1318674_PROD_P30_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216851 --time=1:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216851 --ntasks=1 --jobid=2250365 --cpus-per-task=6 --mem=30750M | |
section_end:1718345404:prepare_executor [0Ksection_start:1718345404:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r1i5n32 via bbpv1.epfl.ch... | |
section_end:1718346306:prepare_script [0Ksection_start:1718346306:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
Session terminated, killing shell... ...killed. | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
[0;33mWARNING: Timed out waiting for the build to finish[0;m | |
srun: Job step aborted: Waiting up to 32 seconds for job step to finish. | |
slurmstepd: error: *** STEP 2250365.1 ON r1i5n32 CANCELLED AT 2024-06-14T08:40:10 *** | |
[31;1mERROR: Job failed: canceled | |
[0;m | |
srun: error: Timed out waiting for job step to complete | |
section_end:1718347242:get_sources [0K |
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