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bbpbuildbot/GitLab logs for neuronsimulator-nrn#2953 Secret

Created July 2, 2024 14:19
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/219873 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2953.
Raw
build-neuron-nmodl-intel-legacy.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1719927904:resolve_secrets Resolving secrets
section_end:1719927904:resolve_secrets section_start:1719927904:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor4032056789, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 219873, build ref , job ID 1336161
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1336161_PROD_P2160_CP0_C0
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2283872
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1336161_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873 --ntasks=2 --jobid=2283872 --cpus-per-task=8 --mem=160G
section_end:1719927905:prepare_executor section_start:1719927905:prepare_script Preparing environment
Using git from spack modules
Running on r1i7n30 via bbpv1.epfl.ch...
section_end:1719927910:prepare_script section_start:1719927910:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1719927911:get_sources section_start:1719927911:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=255523 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1719927916:restore_cache section_start:1719927916:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1336160)...
Runtime platform  arch=amd64 os=linux pid=255671 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1336160 responseStatus=200 OK token=glcbt-64
section_end:1719927917:download_artifacts section_start:1719927917:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873/J1336161_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/pybnafj2h7zocbdq6dbaptu3rdx5fmtq
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2283872/ccache
Config file: /nvme/bbpcihpcproj12/2283872/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Tue Jul 2 15:45:28 2024
Local storage:
Cache size (GB): 0.46 / 0.51 (89.80%)
Files: 7078
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/pybnafj2h7zocbdq6dbaptu3rdx5fmtq
Concretized
--------------------------------
- vpxrsqz neuron@git.e073aa9242973a8e569db9979da021052107a808=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- fz3oxtc ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] pybnafj ^nmodl@git.066bd57e519c25975f7a57ac8961fb297160c16f=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a57ac8961fb297160c16f_develop-pybnaf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt
==> Installing neuron-git.e073aa9242973a8e569db9979da021052107a808=develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px [49/49]
==> No binary for neuron-git.e073aa9242973a8e569db9979da021052107a808=develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
28 errors found in build log:
2913 [ 37%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/fourier.cpp.o
2914 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336158/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973a8
e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqq
k27pij76px/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzj
fh2v2ehthh4cqqk27pij76px/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spa
ck-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_devel
op-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build
-vpxrsqz -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/
spack-build-vpxrsqz/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjf
h2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-
build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a
808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij7
6px/spack-build-vpxrsqz/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuro
n-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2
v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack
-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107
a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij7
6px/spack-build-vpxrsqz/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spac
k-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develo
p-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa
9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk
27pij76px/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjf
h2v2ehthh4cqqk27pij76px/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219
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qk27pij76px/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/
spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210
52107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/s
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j76px/spack-build-vpxrsqz/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build
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evelop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/ivos -I/gpfs
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pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76p
x/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neur
on-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh
2v2ehthh4cqqk27pij76px/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij7
6px/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage
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qzjfh2v2ehthh4cqqk27pij76px/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J133616
1/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02
1052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073
aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cq
qk27pij76px/spack-src/external/eigen -isystem /gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spac
k-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develo
p-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/external/nanobind/inc
lude -march=skylake -mtune=skylake -fopenmp-simd -g -O1 -fp-model
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pp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2198
73/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569
db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spa
ck-src/src/ivoc/fourier.cpp
2915 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron
-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v
2ehthh4cqqk27pij76px/spack-build-vpxrsqz/bin', compiling default o
nes only!
2916 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pi
j76px/spack-build-vpxrsqz MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software
/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a57ac8961
fb297160c16f_develop-pybnaf/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
2917 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz/bin'
2918 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2919 make[3]: xcrun: No such file or directory
2920 Default NMODL flags:
>> 2921 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2922 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2923 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2924 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2925 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
2926 [ 37%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/graph.cpp.o
2927 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
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cihpcproj12/P219873/J1336158/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
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niv_lib.dir/__/ivoc/graph.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/iv
oc/graph.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/graph.cpp.o -
c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13
36161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979
da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src
/src/ivoc/graph.cpp
...
3724 Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./un
itstest.mod"[ 50%] Building CXX object src/nrniv/CMakeFiles/nrniv.
dir/__/oc/ockludge.cpp.o
3725 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
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cihpcproj12/P219873/J1336158/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
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ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073a
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k27pij76px/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
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d/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spac
k-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develo
p-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/nrniv -I/gpfs/bbp
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27pij76px/spack-build-vpxrsqz/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd
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/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
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cihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e0
73aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4
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itlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-s
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rc/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
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roj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa92
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jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuro
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ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
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-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13
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73aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4
cqqk27pij76px/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch
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pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
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rnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2198
73/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569
db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spa
ck-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj
4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_
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n-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2
v2ehthh4cqqk27pij76px/spack-src/external/eigen -isystem /gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-
build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a
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nobind/include -march=skylake -mtune=skylake -fopenmp-simd -g -O1
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3726 "./version_macros.mod"
3727
3728 Creating 'x86_64' directory for .o files.
3729
>> 3730 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s
ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu
ptools.installer and fetch_build_eggs are deprecated.
3731 !!
3732
3733 **********************************************************
**********************
3734 Requirements should be satisfied by a PEP 517 installer.
3735 If you are using pip, you can try `pip install --use-pep51
7`.
3736 **********************************************************
**********************
...
3746 [ 50%] Built target nrn-benchmarks
3747 [ 50%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/mo
dlreg.cpp.o
3748 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
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ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
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bs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-
git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2
ehthh4cqqk27pij76px/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/scopmath -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spa
ck-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210521
07a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/spar
se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/
J1336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9
979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-
src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa92
42973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27
pij76px/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuro
n-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2
v2ehthh4cqqk27pij76px/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-bu
ild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a80
8_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/sundials/
ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack
-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.
e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehth
h4cqqk27pij76px/spack-build-vpxrsqz/src/nrniv/oc_generated -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/iv
os -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/
J1336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9
979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-
src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073
aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cq
qk27pij76px/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/nrnpython/../nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13
36161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979
da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src
/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e0
73aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4
cqqk27pij76px/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/nrnpython/../n
rnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2198
73/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569
db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spa
ck-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj
4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuro
n-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2
v2ehthh4cqqk27pij76px/spack-src/external/eigen -isystem /gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-
build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a
808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/external/na
nobind/include -march=skylake -mtune=skylake -fopenmp-simd -g -O1
-fp-model precise -std=c++17 -pthread -MD -MT src/nrniv/CMakeFile
s/nrniv.dir/__/oc/modlreg.cpp.o -MF CMakeFiles/nrniv.dir/__/oc/mod
lreg.cpp.o.d -o CMakeFiles/nrniv.dir/__/oc/modlreg.cpp.o -c /gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/src/oc/
modlreg.cpp
3749 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pi
j76px/spack-build-vpxrsqz MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
3750 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/c448d279dd3b9
1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
3751 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3752 make[3]: xcrun: No such file or directory
3753 Default NMODL flags:
3754 make -f test/CMakeFiles/NRN_TEST_nrnivmodl_263a5c542e063ee6760ce5
1af8be262e1c89db6e16b2211fb308c533e45334f2.dir/build.make test/CMa
keFiles/NRN_TEST_nrnivmodl_263a5c542e063ee6760ce51af8be262e1c89db6
e16b2211fb308c533e45334f2.dir/depend
3755 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz'
3756 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron
-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v
2ehthh4cqqk27pij76px/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-
git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2
ehthh4cqqk27pij76px/spack-src/test /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjf
h2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/test /gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz
/test/CMakeFiles/NRN_TEST_nrnivmodl_263a5c542e063ee6760ce51af8be26
2e1c89db6e16b2211fb308c533e45334f2.dir/DependInfo.cmake "--color="
>> 3757 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3758 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz'
3759 make -f test/CMakeFiles/NRN_TEST_nrnivmodl_263a5c542e063ee6760ce5
1af8be262e1c89db6e16b2211fb308c533e45334f2.dir/build.make test/CMa
keFiles/NRN_TEST_nrnivmodl_263a5c542e063ee6760ce51af8be262e1c89db6
e16b2211fb308c533e45334f2.dir/build
3760 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz'
3761 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3762 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3763 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
...
4403 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pi
j76px/spack-build-vpxrsqz MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4404 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz'
4405 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
4406 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4407 [ 56%] Building special[-core] for test group external_ringtest_nr
n
4408 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6
620c807381c850fedcdd74295 && cmake -E env NEURONHOME=/gpfs/bbp\.cs
cs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-b
uild/spack-stage-neuron-git\.e073aa9242973a8e569db9979da021052107a
808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/s
hare/nrn NRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336161/spack-build/spack-stage-neuron-git\.e073aa9
242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk2
7pij76px/spack-build-vpxrsqz PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-ne
uron-git\.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqz
jfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/bin:/gpfs/bbp\.cscs\
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.
0-skylake/readline-8\.2-pdugg7/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-co
verage-7\.2\.6-wuxetk/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02
-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3
\.2-lrf2u3/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/bi
n:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/bin:/gpfs/bbp
\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/ins
tall_gcc-12\.3\.0-skylake/nmodl-git\.066bd57e519c25975f7a57ac8961f
b297160c16f_develop-pybnaf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy-
1\.11\.1-t5tove/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1
-tabj2m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5d
ylnc/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/software/install_oneapi-2023\.2\.0-skylake/libsonata-report-
git\.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/bin:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12\.3\.0-skylake/gettext-0\.22\.3-nbi5w5/bin:/gpfs/bbp\.cs
cs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.
3\.0-skylake/pigz-2\.7-dwjcgu/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/ncurse
s-6\.4-6kdbhv/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12\.3\.0-skylake/pkgconf-1\.9\.5-e533uu
/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_application
s/install_gcc-12\.3\.0-skylake/gmake-4\.4\.1-swjylu/bin:/gpfs/bbp\
.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2\.3\.0-skylake/xz-5\.4\.1-wwn5en/bin:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/zs
td-1\.5\.5-aivjoo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_applications/install_gcc-12\.3\.0-skylake/bzip2-1\.0\.8-vdqw
mg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals
/install_gcc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\
.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch/ssd/a
pps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/in
tel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-
12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.csc
s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0
-skylake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.
6\.3-edx4lf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_
externals/install_gcc-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install
_gcc-12\.3\.0-skylake/bison-3\.8\.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/lib/spa
ck/env/oneapi:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P219873/J1336158/spack/lib/spack/env/case-insensitive:/gpfs/bbp
\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spa
ck/lib/spack/env:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023
\.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake
/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gp
fs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_g
cc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skyl
ake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/202
4-02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27
\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.6\.3-edx4lf/b
in:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/ins
tall_gcc-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/gpfs/bbp\.csc
s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0
-skylake/m4-1\.4\.19-wtcpud/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2
024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/bison-3\.8\
.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_co
mpilers/install_gcc-4\.8\.5-haswell/binutils-2\.41-o6yabj/bin:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gc
c-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compile
r/2023\.2\.1/linux/lib/oclfpga/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-one
api-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin/inte
l64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/in
stall_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y
/compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/bootstrap/store/linux-centos7-x86_64/g
cc-10\.2\.1/patchelf-0\.18\.0-afv7arjarb7nzmlh7c5slkfxykybuqce/bin
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/insta
ll_gcc-12\.3\.0-skylake/ccache-4\.7\.4-eompz5/bin:/gpfs/bbp\.cscs\
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/bin:
/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/instal
l_gcc-12\.3\.0-skylake/git-2\.42\.0-sie4gc/bin:/opt/clmgr/sbin:/op
t/clmgr/bin:/opt/sgi/sbin:/opt/sgi/bin:/usr/lib64/qt-3\.3/bin:/usr
/lib64/ccache:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sb
in:/gpfs/bbp\.cscs\.ch/ssd/apps/bb5/systemtools:/opt/c3/bin:/opt/d
dn/ime/bin:/opt/puppetlabs/bin:/sbin:/bin:/gpfs/bbp\.cscs\.ch/home
/bbpcihpcproj12/\.local/bin:/gpfs/bbp\.cscs\.ch/home/bbpcihpcproj1
2/bin LD_LIBRARY_PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git\.e0
73aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4
cqqk27pij76px/spack-build-vpxrsqz/lib:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/intel
-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/lib/intel64:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\
.3\.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/li
b/intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/li
b:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/inst
all_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/c
ompiler/2023\.2\.1/linux/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024
-02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-co
mpilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/lib/x64:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-
4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/
2023\.2\.1/linux/lib/oclfpga/host/linux64/lib:/gpfs/bbp\.cscs\.ch/
ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswel
l/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/lin
ux/compiler/lib/intel64_lin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-
02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.
p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12\.3\.0-skylake/hdf5-1\.14\.3-5o77ye
/lib CORENRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336161/spack-build/spack-stage-neuron-git\.e073aa9
242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk2
7pij76px/spack-build-vpxrsqz PYTHONPATH=/gpfs/bbp\.cscs\.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-st
age-neuron-git\.e073aa9242973a8e569db9979da021052107a808_develop-v
pxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/lib/python:/gp
fs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
61/spack-build/spack-stage-neuron-git\.e073aa9242973a8e569db9979da
021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/t
est/rxd:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
9873/software/install_gcc-12\.3\.0-skylake/nmodl-git\.066bd57e519c
25975f7a57ac8961fb297160c16f_develop-pybnaf/lib:/gpfs/bbp\.cscs\.c
h/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-
skylake/py-pytest-cov-4\.0\.0-z5nf6n/lib/python3\.11/site-packages
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/in
stall_gcc-12\.3\.0-skylake/py-coverage-7\.2\.6-wuxetk/lib/python3\
.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3\.2-lrf2
u3/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/
2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-inic
onfig-2\.0\.0-mvxx6g/lib/python3\.11/site-packages:/gpfs/bbp\.cscs
\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\
.0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/python3\.11/site-packages:
/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/ins
tall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/lib/python3\.11
/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/
lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/202
4-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy-1
\.11\.1-t5tove/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/s
sd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-sky
lake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.11/site-packages:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_g
cc-12\.3\.0-skylake/py-packaging-23\.1-uqml2t/lib/python3\.11/site
-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applic
ations/install_gcc-12\.3\.0-skylake/py-pyyaml-5\.4\.1-2inh3r/lib/p
ython3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.
11\.1-tabj2m/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd
/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyla
ke/py-jinja2-3\.1\.2-7valid/lib/python3\.11/site-packages:/gpfs/bb
p\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc
-12\.3\.0-skylake/py-markupsafe-2\.1\.3-r3ehtm/lib/python3\.11/sit
e-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appli
cations/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5dy
lnc/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-set
uptools-68\.0\.0-p3xbqx/lib/python3\.11/site-packages:/gpfs/bbp\.c
scs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\
.3\.0-skylake/py-pip-23\.1\.2-77ku3v/lib/python3\.11/site-packages
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/in
stall_gcc-12\.3\.0-skylake/py-packaging-23\.1-uqml2t/lib/python3\.
11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_applications/install_gcc-12\.3\.0-skylake/py-mpi4py-3\.1\.4-x733h
w/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2
024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytes
t-7\.3\.2-lrf2u3/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-s
kylake/py-setuptools-68\.0\.0-p3xbqx/lib/python3\.11/site-packages
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/in
stall_gcc-12\.3\.0-skylake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.1
1/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_
applications/install_gcc-12\.3\.0-skylake/py-pytest-cov-4\.0\.0-z5
nf6n/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-in
iconfig-2\.0\.0-mvxx6g/lib/python3\.11/site-packages:/gpfs/bbp\.cs
cs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.
3\.0-skylake/py-sympy-1\.11\.1-t5tove/lib/python3\.11/site-package
s:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12\.3\.0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/python3\.
11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_applications/install_gcc-12\.3\.0-skylake/py-coverage-7\.2\.6-wux
etk/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pip
-23\.1\.2-77ku3v/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-s
kylake/py-numpy-1\.26\.1-elr5pn/lib/python3\.11/site-packages:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc
c-12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/misc:/gpfs/bbp\.cscs\.ch/
ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skyla
ke/ninja-1\.11\.1-nxtlgo/misc /gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2e
hthh4cqqk27pij76px/spack-build-vpxrsqz/bin/nrnivmodl .
>> 4409 make[3]: xcrun: No such file or directory
4410 Default NMODL flags:
4411 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz'
4412 make -f test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivmodl_b
62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876.di
r/build.make test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivmo
dl_b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee87
6.dir/build
4413 [ 56%] Built target hoc_module
4414 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz'
>> 4415 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4416 [ 56%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/CaBK.mod
4417 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/external/tests/red
uced_dentate//mechanisms/CaBK.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neur
on-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh
2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/53c432f7
080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
4418 [ 56%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/DGC_M.mod
4419 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/external/tests/red
uced_dentate//mechanisms/DGC_M.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjf
h2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/53c432f
7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mo
d
4420 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build
-vpxrsqz/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620
c807381c850fedcdd74295
4421 cfiles =
...
4435 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pi
j76px/spack-build-vpxrsqz MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4436 MODOBJS= ./halfgap.o
4437 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
4438 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4439 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/bbd7c82eee28b
931214a8172bb776ba66c406a6620c807381c850fedcdd74295/x86_64'
4440 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4441 make[3]: xcrun: No such file or directory
4442 Default NMODL flags:
4443 -> Compiling mod_func.cpp
4444 -> NMODL .././halfgap.mod
4445 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz'
4446 make -f test/external/tqperf/CMakeFiles/NRN_TEST_nrnivmodl_f7f437
ac4f0ea140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c.dir/bui
ld.make test/external/tqperf/CMakeFiles/NRN_TEST_nrnivmodl_f7f437a
c4f0ea140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c.dir/buil
d
4447 [ 56%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
4448 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/external/tests/red
uced_dentate//mechanisms/DGC_UK.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzj
fh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.
mod
4449 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz'
4450 [ 56%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33
00792f8f757b926b965c058a4d6ee876/Gfluct3.mod
4451 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-
3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/external/tests/testcor
enrn//mod/Gfluct3.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqq
k27pij76px/spack-build-vpxrsqz/test/nrnivmodl/b62f97c7d3f6d905c774
d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
>> 4452 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4453 Translating halfgap.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/bbd7c82eee28b
931214a8172bb776ba66c406a6620c807381c850fedcdd74295/x86_64/halfgap
.cpp
4454 Thread Safe
4455 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/bbd7c82eee28b931214a8172bb77
6ba66c406a6620c807381c850fedcdd74295/x86_64/halfgap.cpp
4456 [ 56%] Generating ../../nrnivmodl/f7f437ac4f0ea140e809f1bdd7f7d032
01e354b9a2041597f8faaf7fb7aebb7c/invlfirestats.mod
4457 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/test/external/tqperf && /gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.
7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stag
e-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxr
sqzjfh2v2ehthh4cqqk27pij76px/spack-src/external/tests/tqperf//modx
/invlfirestats.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa92
42973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27
pij76px/spack-build-vpxrsqz/test/nrnivmodl/f7f437ac4f0ea140e809f1b
dd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/invlfirestats.mod
4458 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <
argument> definition in NetReceiveBlock
...
4700 #pragma omp simd
4701 ^
4702 x86_64/corenrn/mod2c/unitstest.cpp:374:9: warning: loop not vector
ized: the optimizer was unable to perform the requested transforma
tion; the transformation might be disabled or specified as part of
an unsupported transformation ordering [-Wpass-failed=transform-w
arning]
4703 #pragma omp simd
4704 ^
4705 3 warnings generated.
>> 4706 make[3]: xcrun: No such file or directory
4707 Default NMODL flags:
4708 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/fit1.cpp
4709 [ 56%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/holdingi.mod
4710 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/external/tests/red
uced_dentate//mechanisms/holdingi.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsq
zjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdi
ngi.mod
4711 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/gap.cpp
4712 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz'
4713 make -f test/external/channel-benchmark/CMakeFiles/NRN_TEST_nrniv
modl_3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47c3be886
41a.dir/build.make test/external/channel-benchmark/CMakeFiles/NRN_
TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6f
d47c3be88641a.dir/build
>> 4714 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4715 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz'
4716 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/hh1.cpp
4717 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/hhvect.cpp
4718 [NMODL] [warning] :: Can not inline function call to specify_invl
4719 [NMODL] [warning] :: Can not inline function call to specify_invl
4720 [NMODL] [warning] :: Can not inline function call to specify_invl
...
4745 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/order.cpp
4746 [ 56%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
4747 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/external/tests/red
uced_dentate//mechanisms/iconc_Ca.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsq
zjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc
_Ca.mod
4748 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pi
j76px/spack-build-vpxrsqz MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4749 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/b62f97c7d3f6d
905c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
4750 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4751 make[3]: xcrun: No such file or directory
4752 Default NMODL flags:
4753 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/passiv.cpp
4754 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/rchan.cpp
>> 4755 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4756 [NMODL] [warning] :: Can not inline function call to mynormrand
4757 [NMODL] [warning] :: Can not inline function call to mynormrand
4758 [NMODL] [warning] :: Can not inline function call to mynormrand
4759 [NMODL] [warning] :: Can not inline function call to mynormrand
4760 [ 56%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/CaDynamics_E2.mod
4761 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/CaDynamics_E2.mod /
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
61/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-
vpxrsqz/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d
5963dc6fd47c3be88641a/CaDynamics_E2.mod
...
5205 ^
5206 1 warning generated.
5207 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz'
5208 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron
-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v
2ehthh4cqqk27pij76px/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-
git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2
ehthh4cqqk27pij76px/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2e
hthh4cqqk27pij76px/spack-build-vpxrsqz /gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage
-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrs
qzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/sp
ack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_deve
lop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/CMakeFile
s/generate-neurondemo-mechanism-library.dir/DependInfo.cmake "--co
lor="
5209 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/53c432f7080fe
7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
5210 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5211 make[3]: xcrun: No such file or directory
5212 Default NMODL flags:
5213 [ 60%] Building special[-core] for test group olfactory-bulb-3d
5214 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/test/nrnivmodl/14c92ceb412f1b4e766bfda05bec75b2d552a2f
4499313751329f0689cf9faab && cmake -E env NEURONHOME=/gpfs/bbp\.cs
cs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-b
uild/spack-stage-neuron-git\.e073aa9242973a8e569db9979da021052107a
808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/s
hare/nrn NRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336161/spack-build/spack-stage-neuron-git\.e073aa9
242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk2
7pij76px/spack-build-vpxrsqz PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-ne
uron-git\.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqz
jfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/bin:/gpfs/bbp\.cscs\
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.
0-skylake/readline-8\.2-pdugg7/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-co
verage-7\.2\.6-wuxetk/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02
-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3
\.2-lrf2u3/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/bi
n:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/bin:/gpfs/bbp
\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/ins
tall_gcc-12\.3\.0-skylake/nmodl-git\.066bd57e519c25975f7a57ac8961f
b297160c16f_develop-pybnaf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy-
1\.11\.1-t5tove/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1
-tabj2m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5d
ylnc/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/software/install_oneapi-2023\.2\.0-skylake/libsonata-report-
git\.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/bin:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12\.3\.0-skylake/gettext-0\.22\.3-nbi5w5/bin:/gpfs/bbp\.cs
cs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.
3\.0-skylake/pigz-2\.7-dwjcgu/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/ncurse
s-6\.4-6kdbhv/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12\.3\.0-skylake/pkgconf-1\.9\.5-e533uu
/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_application
s/install_gcc-12\.3\.0-skylake/gmake-4\.4\.1-swjylu/bin:/gpfs/bbp\
.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2\.3\.0-skylake/xz-5\.4\.1-wwn5en/bin:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/zs
td-1\.5\.5-aivjoo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_applications/install_gcc-12\.3\.0-skylake/bzip2-1\.0\.8-vdqw
mg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals
/install_gcc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\
.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch/ssd/a
pps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/in
tel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-
12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.csc
s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0
-skylake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.
6\.3-edx4lf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_
externals/install_gcc-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install
_gcc-12\.3\.0-skylake/bison-3\.8\.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/lib/spa
ck/env/oneapi:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P219873/J1336158/spack/lib/spack/env/case-insensitive:/gpfs/bbp
\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spa
ck/lib/spack/env:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023
\.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake
/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gp
fs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_g
cc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skyl
ake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/202
4-02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27
\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.6\.3-edx4lf/b
in:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/ins
tall_gcc-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/gpfs/bbp\.csc
s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0
-skylake/m4-1\.4\.19-wtcpud/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2
024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/bison-3\.8\
.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_co
mpilers/install_gcc-4\.8\.5-haswell/binutils-2\.41-o6yabj/bin:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gc
c-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compile
r/2023\.2\.1/linux/lib/oclfpga/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-one
api-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin/inte
l64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/in
stall_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y
/compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/bootstrap/store/linux-centos7-x86_64/g
cc-10\.2\.1/patchelf-0\.18\.0-afv7arjarb7nzmlh7c5slkfxykybuqce/bin
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/insta
ll_gcc-12\.3\.0-skylake/ccache-4\.7\.4-eompz5/bin:/gpfs/bbp\.cscs\
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/bin:
/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/instal
l_gcc-12\.3\.0-skylake/git-2\.42\.0-sie4gc/bin:/opt/clmgr/sbin:/op
t/clmgr/bin:/opt/sgi/sbin:/opt/sgi/bin:/usr/lib64/qt-3\.3/bin:/usr
/lib64/ccache:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sb
in:/gpfs/bbp\.cscs\.ch/ssd/apps/bb5/systemtools:/opt/c3/bin:/opt/d
dn/ime/bin:/opt/puppetlabs/bin:/sbin:/bin:/gpfs/bbp\.cscs\.ch/home
/bbpcihpcproj12/\.local/bin:/gpfs/bbp\.cscs\.ch/home/bbpcihpcproj1
2/bin LD_LIBRARY_PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git\.e0
73aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4
cqqk27pij76px/spack-build-vpxrsqz/lib:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/intel
-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/lib/intel64:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\
.3\.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/li
b/intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/li
b:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/inst
all_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/c
ompiler/2023\.2\.1/linux/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024
-02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-co
mpilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/lib/x64:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-
4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/
2023\.2\.1/linux/lib/oclfpga/host/linux64/lib:/gpfs/bbp\.cscs\.ch/
ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswel
l/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/lin
ux/compiler/lib/intel64_lin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-
02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.
p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12\.3\.0-skylake/hdf5-1\.14\.3-5o77ye
/lib CORENRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336161/spack-build/spack-stage-neuron-git\.e073aa9
242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk2
7pij76px/spack-build-vpxrsqz PYTHONPATH=/gpfs/bbp\.cscs\.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-st
age-neuron-git\.e073aa9242973a8e569db9979da021052107a808_develop-v
pxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/lib/python:/gp
fs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
61/spack-build/spack-stage-neuron-git\.e073aa9242973a8e569db9979da
021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/t
est/rxd:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
9873/software/install_gcc-12\.3\.0-skylake/nmodl-git\.066bd57e519c
25975f7a57ac8961fb297160c16f_develop-pybnaf/lib:/gpfs/bbp\.cscs\.c
h/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-
skylake/py-pytest-cov-4\.0\.0-z5nf6n/lib/python3\.11/site-packages
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/in
stall_gcc-12\.3\.0-skylake/py-coverage-7\.2\.6-wuxetk/lib/python3\
.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3\.2-lrf2
u3/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/
2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-inic
onfig-2\.0\.0-mvxx6g/lib/python3\.11/site-packages:/gpfs/bbp\.cscs
\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\
.0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/python3\.11/site-packages:
/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/ins
tall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/lib/python3\.11
/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/
lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/202
4-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy-1
\.11\.1-t5tove/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/s
sd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-sky
lake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.11/site-packages:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_g
cc-12\.3\.0-skylake/py-packaging-23\.1-uqml2t/lib/python3\.11/site
-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applic
ations/install_gcc-12\.3\.0-skylake/py-pyyaml-5\.4\.1-2inh3r/lib/p
ython3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.
11\.1-tabj2m/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd
/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyla
ke/py-jinja2-3\.1\.2-7valid/lib/python3\.11/site-packages:/gpfs/bb
p\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc
-12\.3\.0-skylake/py-markupsafe-2\.1\.3-r3ehtm/lib/python3\.11/sit
e-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appli
cations/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5dy
lnc/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-set
uptools-68\.0\.0-p3xbqx/lib/python3\.11/site-packages:/gpfs/bbp\.c
scs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\
.3\.0-skylake/py-pip-23\.1\.2-77ku3v/lib/python3\.11/site-packages
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/in
stall_gcc-12\.3\.0-skylake/py-packaging-23\.1-uqml2t/lib/python3\.
11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_applications/install_gcc-12\.3\.0-skylake/py-mpi4py-3\.1\.4-x733h
w/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2
024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytes
t-7\.3\.2-lrf2u3/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-s
kylake/py-setuptools-68\.0\.0-p3xbqx/lib/python3\.11/site-packages
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/in
stall_gcc-12\.3\.0-skylake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.1
1/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_
applications/install_gcc-12\.3\.0-skylake/py-pytest-cov-4\.0\.0-z5
nf6n/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-in
iconfig-2\.0\.0-mvxx6g/lib/python3\.11/site-packages:/gpfs/bbp\.cs
cs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.
3\.0-skylake/py-sympy-1\.11\.1-t5tove/lib/python3\.11/site-package
s:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12\.3\.0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/python3\.
11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_applications/install_gcc-12\.3\.0-skylake/py-coverage-7\.2\.6-wux
etk/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pip
-23\.1\.2-77ku3v/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-s
kylake/py-numpy-1\.26\.1-elr5pn/lib/python3\.11/site-packages:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc
c-12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/misc:/gpfs/bbp\.cscs\.ch/
ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skyla
ke/ninja-1\.11\.1-nxtlgo/misc /gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2e
hthh4cqqk27pij76px/spack-build-vpxrsqz/bin/nrnivmodl -coreneuron .
5215 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz'
5216 make -f CMakeFiles/generate-neurondemo-mechanism-library.dir/buil
d.make CMakeFiles/generate-neurondemo-mechanism-library.dir/build
5217 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5218 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5219 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
>> 5220 x86_64/corenrn/mod2c/hhkin.cpp:38:10: fatal error: 'Eigen/Core' fi
le not found
5221 #include <Eigen/Core>
5222 ^~~~~~~~~~~~
5223 1 error generated.
5224 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz'
>> 5225 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/hhkin.o] Error 1
5226 make[3]: *** Waiting for unfinished jobs....
>> 5227 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5228 [ 60%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/kd.mod
5229 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kd.mod /gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-bu
ild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a80
8_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/tes
t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47
c3be88641a/kd.mod
5230 [ 60%] Generating share/nrn/demo/release/x86_64/special, share/nrn
/demo/release/x86_64/libnrnmech.so
5231 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-bu
ild-vpxrsqz/share/nrn/demo/release && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E env NEURONHOME=/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage
-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrs
qzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/share/nrn NRNHOME=
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build
-vpxrsqz PATH=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdug
g7/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_application
s/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk/bin:/gpfs/bb
p.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2.3.0-skylake/py-pytest-7.3.2-lrf2u3/bin:/gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-
pip-23.1.2-77ku3v/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
/bin:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/
software/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a
57ac8961fb297160c16f_develop-pybnaf/bin:/gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-s
ympy-1.11.1-t5tove/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/s
tage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-ta
bj2m/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applicati
ons/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc/bin:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/softw
are/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa
710d6766ce23cd151a1855190271bd8_develop-fz3oxt/bin:/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-s
kylake/gettext-0.22.3-nbi5w5/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dw
jcgu/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applicati
ons/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/bin:/gpfs/bbp.cs
cs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.
0-skylake/pkgconf-1.9.5-e533uu/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/
2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4
.1-swjylu/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en/bin:/gpfs/bbp.
cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.
3.0-skylake/zstd-1.5.5-aivjoo/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2
024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.
8-vdqwmg/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_exter
nals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/bin:/gpfs/bbp
.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.
0-skylake/python-3.11.6-bj4i6m/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/
2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi
-mkl-2023.2.0-twl2n4/mkl/2023.2.0/bin/intel64:/gpfs/bbp.cscs.ch/ss
d/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/h
pe-mpi-2.27.p1.hmpt-6rr256/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxt
lgo/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/
install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf/bin:/gpfs/bbp.cscs.ch
/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylak
e/cmake-3.27.7-slyoes/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-0
1/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg/bi
n:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13
36158/spack/lib/spack/env/oneapi:/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336158/spack/lib/spack/env/case-inse
nsitive:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2198
73/J1336158/spack/lib/spack/env:/gpfs/bbp.cscs.ch/ssd/apps/bsd/202
4-02-01/stage_compilers/install_gcc-4.8.5-haswell/intel-oneapi-com
pilers-2023.2.1-tnua5y/compiler/2023.2.1/linux/bin:/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
ake/intel-oneapi-mkl-2023.2.0-twl2n4/mkl/2023.2.0/bin/intel64:/gpf
s/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-
12.3.0-skylake/python-3.11.6-bj4i6m/bin:/gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1
.11.1-nxtlgo/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_e
xternals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/bi
n:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/instal
l_gcc-12.3.0-skylake/flex-2.6.3-edx4lf/bin:/gpfs/bbp.cscs.ch/ssd/a
pps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmak
e-3.27.7-slyoes/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/m4-1.4.19-wtcpud/bin:/gpfs/
bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12
.3.0-skylake/bison-3.8.2-qcx3sg/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_compilers/install_gcc-4.8.5-haswell/binutils-2.4
1-o6yabj/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compi
lers/install_gcc-4.8.5-haswell/intel-oneapi-compilers-2023.2.1-tnu
a5y/compiler/2023.2.1/linux/lib/oclfpga/bin:/gpfs/bbp.cscs.ch/ssd/
apps/bsd/2024-02-01/stage_compilers/install_gcc-4.8.5-haswell/inte
l-oneapi-compilers-2023.2.1-tnua5y/compiler/2023.2.1/linux/bin/int
el64:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/ins
tall_gcc-4.8.5-haswell/intel-oneapi-compilers-2023.2.1-tnua5y/comp
iler/2023.2.1/linux/bin:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/bootstrap/store/linux-centos7-x86_64/gcc-10.2.1
/patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce/bin:/gpfs/bbp.cs
cs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-s
kylake/ccache-4.7.4-eompz5/bin:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P219873/J1336158/spack/bin:/gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/gi
t-2.42.0-sie4gc/bin:/opt/clmgr/sbin:/opt/clmgr/bin:/opt/sgi/sbin:/
opt/sgi/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin
:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/gpfs/bbp.cscs.ch/ssd/app
s/bb5/systemtools:/opt/c3/bin:/opt/ddn/ime/bin:/opt/puppetlabs/bin
:/sbin:/bin:/gpfs/bbp.cscs.ch/home/bbpcihpcproj12/.local/bin:/gpfs
/bbp.cscs.ch/home/bbpcihpcproj12/bin LD_LIBRARY_PATH=/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-bui
ld/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808
_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz/lib:
/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4/mkl/2023.2.0/l
ib/intel64:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externa
ls/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4/mkl
/2023.2.0/lib/intel64:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st
age_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr2
56/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/i
nstall_gcc-4.8.5-haswell/intel-oneapi-compilers-2023.2.1-tnua5y/co
mpiler/2023.2.1/linux/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-0
1/stage_compilers/install_gcc-4.8.5-haswell/intel-oneapi-compilers
-2023.2.1-tnua5y/compiler/2023.2.1/linux/lib/x64:/gpfs/bbp.cscs.ch
/ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-4.8.5-haswell
/intel-oneapi-compilers-2023.2.1-tnua5y/compiler/2023.2.1/linux/li
b/oclfpga/host/linux64/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_compilers/install_gcc-4.8.5-haswell/intel-oneapi-compiler
s-2023.2.1-tnua5y/compiler/2023.2.1/linux/compiler/lib/intel64_lin
:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install
_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib:/gpfs/bbp.cscs
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-
skylake/hdf5-1.14.3-5o77ye/lib CORENRNHOME=/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-s
tage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-v
pxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vpxrsqz PYTHONPATH=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161
/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021
052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-vp
xrsqz/lib/python:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pi
j76px/spack-src/test/rxd:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/software/install_gcc-12.3.0-skylake/nmodl-git.
066bd57e519c25975f7a57ac8961fb297160c16f_develop-pybnaf/lib:/gpfs/
bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc
-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n/lib/python3.11/site-pac
kages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications
/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk/lib/python3.1
1/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ap
plications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3/lib/p
ython3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/
stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-m
vxx6g/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/
2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy
-1.0.0-6su7kv/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/a
pps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/p
y-numpy-1.26.1-elr5pn/lib/python3.11/site-packages:/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-s
kylake/py-mpi4py-3.1.4-x733hw/lib/python3.11/site-packages:/gpfs/b
bp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-
12.3.0-skylake/py-sympy-1.11.1-t5tove/lib/python3.11/site-packages
:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi/lib/python3.11/site-
packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applicati
ons/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t/lib/python
3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r/li
b/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.
1-tabj2m/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jin
ja2-3.1.2-7valid/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ss
d/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylak
e/py-markupsafe-2.1.3-r3ehtm/lib/python3.11/site-packages:/gpfs/bb
p.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2.3.0-skylake/py-find-libpython-0.3.1-5dylnc/lib/python3.11/site-p
ackages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applicatio
ns/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/pyth
on3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v/li
b/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1
-uqml2t/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4
py-3.1.4-x733hw/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake
/py-pytest-7.3.2-lrf2u3/lib/python3.11/site-packages:/gpfs/bbp.csc
s.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0
-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/site-packages:
/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi/lib/python3.11/site-p
ackages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applicatio
ns/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n/lib/pytho
n3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6
g/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11
.1-t5tove/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/
bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pl
uggy-1.0.0-6su7kv/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skyla
ke/py-coverage-7.2.6-wuxetk/lib/python3.11/site-packages:/gpfs/bbp
.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12
.3.0-skylake/py-pip-23.1.2-77ku3v/lib/python3.11/site-packages:/gp
fs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_
gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn/lib/python3.11/site-pack
ages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/ins
tall_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo/misc:/gpfs/bbp.cscs.ch
/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylak
e/ninja-1.11.1-nxtlgo/misc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.
e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehth
h4cqqk27pij76px/spack-build-vpxrsqz/bin/nrnivmodl
5232 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build
-vpxrsqz/test/nrnivmodl/14c92ceb412f1b4e766bfda05bec75b2d552a2f449
9313751329f0689cf9faab
5233 cfiles =
...
5349 #pragma omp simd
5350 ^
5351 2 warnings generated.
5352 MODOBJS= ./Gfluct.o ./ThreshDetect.o ./ampanmda.o ./distrt.o ./fi.
o ./fi_stdp.o ./gap.o ./kamt.o ./kdrmt.o ./ks.o ./naxn.o ./orn.o .
/ostimhelper.o
5353 -> NMODL ../nacaex.mod
5354 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/b62f97c7d3f6d9
05c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
>> 5355 make[2]: *** [test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivm
odl_b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee8
76.dir/build.make:95: test/nrnivmodl/b62f97c7d3f6d905c774d64e10128
b3300792f8f757b926b965c058a4d6ee876/x86_64/special] Error 2
5356 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz'
>> 5357 make[1]: *** [CMakeFiles/Makefile2:8511: test/external/testcorenrn
/CMakeFiles/NRN_TEST_nrnivmodl_b62f97c7d3f6d905c774d64e10128b33007
92f8f757b926b965c058a4d6ee876.dir/all] Error 2
5358 make[1]: *** Waiting for unfinished jobs....
5359 Translating invlfire.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2e
hthh4cqqk27pij76px/spack-build-vpxrsqz/share/nrn/demo/release/x86_
64/invlfire.cpp
5360 Thread Safe
5361 -> NMODL ../nachan.mod
5362 Translating capump.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz/share/nrn/demo/release/x86_64
/capump.cpp
5363 Thread Safe
...
5414 cfiles =
5415 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4c
qqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/a9c54b18e4b54351cb
4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./special" L
DFLAGS are:
5416 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4c
qqk27pij76px/spack-build-vpxrsqz/share/nrn/demo/release/x86_64/./s
pecial" LDFLAGS are:
5417 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pi
j76px/spack-build-vpxrsqz MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5418 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/14c92ceb412f1
b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
5419 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5420 make[3]: xcrun: No such file or directory
5421 Default NMODL flags:
>> 5422 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5423 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5424 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5425 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5426 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5427 [NMODL] [warning] :: SYMTAB :: w [Argument] in NetReceiveBlock sha
dows <assigned_definition> definition in NMODL_GLOBAL
5428 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
...
5660 #pragma omp simd
5661 ^
5662 3 warnings generated.
5663 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pi
j76px/spack-build-vpxrsqz MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5664 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eh
thh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/3a24bd33c51ee
30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a'
5665 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5666 make[3]: xcrun: No such file or directory
5667 Default NMODL flags:
>> 5668 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5669 x86_64/corenrn/mod2c/exp2syn.cpp:295:9: warning: loop not vectoriz
ed: the optimizer was unable to perform the requested transformati
on; the transformation might be disabled or specified as part of a
n unsupported transformation ordering [-Wpass-failed=transform-war
ning]
5670 #pragma omp simd
5671 ^
5672 x86_64/corenrn/mod2c/exp2syn.cpp:329:13: warning: loop not vectori
zed: the optimizer was unable to perform the requested transformat
ion; the transformation might be disabled or specified as part of
an unsupported transformation ordering [-Wpass-failed=transform-wa
rning]
5673 #pragma omp simd
5674 ^
...
5920 x86_64/corenrn/mod2c/kdrmt.cpp:396:9: warning: loop not vectorized
: the optimizer was unable to perform the requested transformation
; the transformation might be disabled or specified as part of an
unsupported transformation ordering [-Wpass-failed=transform-warni
ng]
5921 #pragma omp simd
5922 ^
5923 3 warnings generated.
5924 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8
c2b6901bba2525195c69836276a4b5d88ca7/x86_64/noisychan.cpp
5925 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8
c2b6901bba2525195c69836276a4b5d88ca7/x86_64/red.cpp
>> 5926 x86_64/corenrn/mod2c/SH_na8st.cpp:38:10: fatal error: 'Eigen/Core'
file not found
5927 #include <Eigen/Core>
5928 ^~~~~~~~~~~~
5929 1 error generated.
>> 5930 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/SH_na8st.o] Error 1
5931 make[3]: *** Waiting for unfinished jobs....
5932 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8
c2b6901bba2525195c69836276a4b5d88ca7/x86_64/sample.cpp
5933 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8
c2b6901bba2525195c69836276a4b5d88ca7/x86_64/unitstest.cpp
5934 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76
px/spack-build-vpxrsqz/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8
c2b6901bba2525195c69836276a4b5d88ca7/x86_64/version_macros.cpp
5935 x86_64/corenrn/mod2c/SH_KIn.cpp:376:13: warning: loop not vectoriz
ed: the optimizer was unable to perform the requested transformati
on; the transformation might be disabled or specified as part of a
n unsupported transformation ordering [-Wpass-failed=transform-war
ning]
5936 #pragma omp simd
...
6053 ^
6054 x86_64/corenrn/mod2c/ccanl.cpp:465:9: warning: loop not vectorized
: the optimizer was unable to perform the requested transformation
; the transformation might be disabled or specified as part of an
unsupported transformation ordering [-Wpass-failed=transform-warni
ng]
6055 #pragma omp simd
6056 ^
6057 2 warnings generated.
6058 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/53c432f7080fe7
b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
>> 6059 make[2]: *** [test/external/reduced_dentate/CMakeFiles/NRN_TEST_nr
nivmodl_53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5
edfead.dir/build.make:117: test/nrnivmodl/53c432f7080fe7b786e16536
f2d17f96d387425d200c645a6b4cec93b5edfead/x86_64/special] Error 2
6060 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz'
>> 6061 make[1]: *** [CMakeFiles/Makefile2:8091: test/external/reduced_den
tate/CMakeFiles/NRN_TEST_nrnivmodl_53c432f7080fe7b786e16536f2d17f9
6d387425d200c645a6b4cec93b5edfead.dir/all] Error 2
6062 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/c35d2f235e0f38
60fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64/./libnrn
mech.so"
6063 x86_64/corenrn/mod2c/ks.cpp:300:13: warning: loop not vectorized:
the optimizer was unable to perform the requested transformation;
the transformation might be disabled or specified as part of an un
supported transformation ordering [-Wpass-failed=transform-warning
]
6064 #pragma omp simd
6065 ^
6066 x86_64/corenrn/mod2c/ks.cpp:349:9: warning: loop not vectorized: t
he optimizer was unable to perform the requested transformation; t
he transformation might be disabled or specified as part of an uns
upported transformation ordering [-Wpass-failed=transform-warning]
6067 #pragma omp simd
...
6943 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4c
qqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/3a24bd33c51ee30c68
f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64/./special" L
DFLAGS are:
6944 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz/test/nrnivmodl/3a24bd33c51ee3
0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64'
6945 Successfully created x86_64/special
6946 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz'
6947 [ 60%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1
46a37c165552933d5963dc6fd47c3be88641a
6948 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2eht
hh4cqqk27pij76px/spack-build-vpxrsqz'
>> 6949 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336161/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-vpxrsqzjfh2v2ehthh4cqqk27pij76px/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i7n30: task 0: Exited with exit code 1
section_end:1719928650:step_script section_start:1719928650:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=277914 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1336161 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=277962 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1336161 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=278014 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1336161 responseStatus=201 Created token=glcbt-64
section_end:1719928652:upload_artifacts_on_failure section_start:1719928652:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1719928652:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-intel-shared.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1719927905:resolve_secrets Resolving secrets
section_end:1719927905:resolve_secrets section_start:1719927905:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1594312561, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 219873, build ref , job ID 1336162
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1336162_PROD_P2160_CP1_C7
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2283873
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1336162_PROD_P2160_CP1_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873 --ntasks=2 --jobid=2283873 --cpus-per-task=8 --mem=160G
section_end:1719927908:prepare_executor section_start:1719927908:prepare_script Preparing environment
Using git from spack modules
Running on r1i7n31 via bbpv1.epfl.ch...
section_end:1719927912:prepare_script section_start:1719927912:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1719927913:get_sources section_start:1719927913:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:shared-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=278053 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1719927918:restore_cache section_start:1719927918:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1336160)...
Runtime platform  arch=amd64 os=linux pid=278316 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1336160 responseStatus=200 OK token=glcbt-64
section_end:1719927919:download_artifacts section_start:1719927919:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873/J1336162_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/pybnafj2h7zocbdq6dbaptu3rdx5fmtq
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2283873/ccache
Config file: /nvme/bbpcihpcproj12/2283873/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Tue Jul 2 15:45:24 2024
Local storage:
Cache size (GB): 0.45 / 0.51 (87.75%)
Files: 6790
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/pybnafj2h7zocbdq6dbaptu3rdx5fmtq
Concretized
--------------------------------
- mo7mnoo neuron@git.e073aa9242973a8e569db9979da021052107a808=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- fz3oxtc ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] pybnafj ^nmodl@git.066bd57e519c25975f7a57ac8961fb297160c16f=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul [44/49]
==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul
Stage: 2.21s. Cmake: 5.20s. Build: 1.72s. Install: 0.11s. Post-install: 0.38s. Total: 9.82s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a57ac8961fb297160c16f_develop-pybnaf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
==> Installing neuron-git.e073aa9242973a8e569db9979da021052107a808=develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs [49/49]
==> No binary for neuron-git.e073aa9242973a8e569db9979da021052107a808=develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
42 errors found in build log:
2920 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336158/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8
e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duh
uwlyvzomzs/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoou
u7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spa
ck-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_devel
op-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build
-mo7mnoo -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/
spack-build-mo7mnoo/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu
7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-
build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a
808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzo
mzs/spack-build-mo7mnoo/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuro
n-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j
2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack
-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107
a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzo
mzs/spack-build-mo7mnoo/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spac
k-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develo
p-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa
9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhu
wlyvzomzs/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu
7j2nf42sq6duhuwlyvzomzs/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219
873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e56
9db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073
aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6du
huwlyvzomzs/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/
spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210
52107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyv
zomzs/spack-build-mo7mnoo/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomz
s/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neur
on-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7
j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzo
mzs/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage
-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mn
oouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J133616
2/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02
1052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073
aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6du
huwlyvzomzs/spack-src/external/eigen -isystem /gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spac
k-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develo
p-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/nanobind/inc
lude -march=skylake -mtune=skylake -fopenmp-simd -g -O1 -fp-model
precise -std=c++17 -fPIC -pthread -MD -MT src/nrniv/CMakeFiles/nr
niv_lib.dir/__/ivoc/checkpnt.cpp.o -MF CMakeFiles/nrniv_lib.dir/__
/ivoc/checkpnt.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/checkpn
t.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/
spack-src/src/ivoc/checkpnt.cpp
2921 [ 35%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/fourier.cpp.o
2922 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336158/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8
e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duh
uwlyvzomzs/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoou
u7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spa
ck-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_devel
op-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build
-mo7mnoo -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/
spack-build-mo7mnoo/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu
7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-
build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a
808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzo
mzs/spack-build-mo7mnoo/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuro
n-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j
2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack
-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107
a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzo
mzs/spack-build-mo7mnoo/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spac
k-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develo
p-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa
9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhu
wlyvzomzs/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu
7j2nf42sq6duhuwlyvzomzs/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219
873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e56
9db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073
aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6du
huwlyvzomzs/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/
spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210
52107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyv
zomzs/spack-build-mo7mnoo/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomz
s/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neur
on-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7
j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzo
mzs/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage
-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mn
oouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J133616
2/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02
1052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073
aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6du
huwlyvzomzs/spack-src/external/eigen -isystem /gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spac
k-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develo
p-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/nanobind/inc
lude -march=skylake -mtune=skylake -fopenmp-simd -g -O1 -fp-model
precise -std=c++17 -fPIC -pthread -MD -MT src/nrniv/CMakeFiles/nr
niv_lib.dir/__/ivoc/fourier.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/
ivoc/fourier.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/fourier.c
pp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2198
73/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569
db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spa
ck-src/src/ivoc/fourier.cpp
2923 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyv
zomzs/spack-build-mo7mnoo MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software
/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a57ac8961
fb297160c16f_develop-pybnaf/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
2924 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo/bin'
2925 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2926 make[3]: xcrun: No such file or directory
2927 Default NMODL flags:
>> 2928 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2929 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2930 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2931 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2932 [ 35%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/gifimage.cpp.o
2933 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336158/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
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979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-
src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa92
42973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwl
yvzomzs/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuro
n-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j
2nf42sq6duhuwlyvzomzs/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-bu
ild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a80
8_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/sundials/
ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack
-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.
e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42s
q6duhuwlyvzomzs/spack-build-mo7mnoo/src/nrniv/oc_generated -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/iv
os -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/
J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9
979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-
src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073
aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6du
huwlyvzomzs/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnpython/../nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13
36162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979
da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src
/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e0
73aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6
duhuwlyvzomzs/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnpython/../n
rnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2198
73/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569
db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spa
ck-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj
4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuro
n-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j
2nf42sq6duhuwlyvzomzs/spack-src/external/eigen -isystem /gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-
build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a
808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/na
nobind/include -march=skylake -mtune=skylake -fopenmp-simd -g -O1
-fp-model precise -std=c++17 -pthread -MD -MT src/nrniv/CMakeFile
s/nrniv.dir/__/oc/ockludge.cpp.o -MF CMakeFiles/nrniv.dir/__/oc/oc
kludge.cpp.o.d -o CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o -c /gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162
/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021
052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/
oc/ockludge.cpp
>> 3733 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s
ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu
ptools.installer and fetch_build_eggs are deprecated.
3734 !!
3735
3736 **********************************************************
**********************
3737 Requirements should be satisfied by a PEP 517 installer.
3738 If you are using pip, you can try `pip install --use-pep51
7`.
3739 **********************************************************
**********************
...
3764 Successfully created x86_64/special
3765 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo'
3766 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/c448d279dd3b9
1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
3767 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
3768 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo'
3769 make -f test/CMakeFiles/NRN_TEST_nrnivmodl_263a5c542e063ee6760ce5
1af8be262e1c89db6e16b2211fb308c533e45334f2.dir/build.make test/CMa
keFiles/NRN_TEST_nrnivmodl_263a5c542e063ee6760ce51af8be262e1c89db6
e16b2211fb308c533e45334f2.dir/build
>> 3770 make[3]: xcrun: No such file or directory
3771 Default NMODL flags:
3772 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo'
3773 [ 48%] Linking CXX executable ../../bin/nrniv
3774 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
n/cmake -E cmake_link_script CMakeFiles/nrniv.dir/link.txt --verbo
se=1
3775 [ 48%] Built target NRN_TEST_nrnivmodl_fb5fb42ddab2ff650e8e4e789eb
94701174e41ce7edaa51ad58d4fd93f798b51
3776 [ 48%] Built target NRN_TEST_nrnivmodl_8b70050800897334ac3dcf9bccb
ec23ce253950bb3247c96e6ab2f9c53f6288c
>> 3777 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3778 [ 48%] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db
6e16b2211fb308c533e45334f2/vlag.mod
3779 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6d
uhuwlyvzomzs/spack-src/share/examples/nrniv/nmodl/vlag.mod /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spa
ck-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210521
07a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mno
o/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb
308c533e45334f2/vlag.mod
3780 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
158/spack/lib/spack/env/oneapi/icpx -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise CMakeFiles/nrniv.dir/__/iv
oc/nrnmain.cpp.o CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o CMakeFi
les/nrniv.dir/__/oc/modlreg.cpp.o -o ../../bin/nrniv -Wl,-rpath,/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
62/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-
mo7mnoo/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applic
ations/install_gcc-12.3.0-skylake/readline-8.2-pdugg7/lib:/gpfs/bb
p.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3
.0-skylake/python-3.11.6-bj4i6m/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-
6.4-6kdbhv/lib: ../../lib/libnrniv.so -ldl /gpfs/bbp.cscs.ch/ssd/a
pps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/r
eadline-8.2-pdugg7/lib/libreadline.so -pthread ../../lib/libnrngnu
.a ../../lib/libsparse13.a /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m
/lib/libpython3.11.so ../../lib/libnanobind.a /gpfs/bbp.cscs.ch/ss
d/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylak
e/ncurses-6.4-6kdbhv/lib/libcurses.so /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurse
s-6.4-6kdbhv/lib/libform.so -ldl
3781 [ 48%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
ts/container/container.cpp.o
3782 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P219873/J1336158/spack/lib/spack/env/oneapi/icpx -DCORENRN_
BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-
build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a
808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/ivoc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/s
rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e0
73aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6
duhuwlyvzomzs/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-ne
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gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
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scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-b
uild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a8
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P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a
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s/spack-build-mo7mnoo/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neur
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bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spa
ck-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210521
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spack-build-mo7mnoo/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
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bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spa
ck-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210521
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ihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e07
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/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
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h/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/
spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_de
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gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
62/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/sr
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P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a
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b_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage
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s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-bui
ld/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808
_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/sundials -
I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J133
6162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979d
a021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/
src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duh
uwlyvzomzs/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stag
e-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7m
noouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/sundials/shared -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/extern
al/catch2/src/catch2/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e
073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq
6duhuwlyvzomzs/spack-build-mo7mnoo/external/catch2/generated-inclu
des -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack
-build-mo7mnoo/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stag
e-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7m
noouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/ivos -I/gpfs/bbp.cscs.c
h/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/
spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_de
velop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnpython/..
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13
36162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979
da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src
/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073
aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6du
huwlyvzomzs/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spa
ck-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_devel
op-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnpython/../ivo
c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J
1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db99
79da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-s
rc/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-bui
ld/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808
_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/src/nrnpython/
../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_external
s/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python3.
11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8
e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs
/spack-src/external/eigen -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu
7j2nf42sq6duhuwlyvzomzs/spack-src/external/nanobind/include -march
=skylake -mtune=skylake -fopenmp-simd -g -O1 -fp-model precise -s
td=c++17 -pthread -MD -MT test/CMakeFiles/testneuron.dir/unit_test
s/container/container.cpp.o -MF CMakeFiles/testneuron.dir/unit_tes
ts/container/container.cpp.o.d -o CMakeFiles/testneuron.dir/unit_t
ests/container/container.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neur
on-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7
j2nf42sq6duhuwlyvzomzs/spack-src/test/unit_tests/container/contain
er.cpp
3783 [ 48%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
ts/iovec.cpp.o
...
4403 make -f test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivmodl_b
62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876.di
r/build.make test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivmo
dl_b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee87
6.dir/build
4404 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo'
4405 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
4406 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4407 [ 54%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/DGC_M.mod
4408 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/red
uced_dentate//mechanisms/DGC_M.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu
7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/53c432f
7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mo
d
>> 4409 make[3]: xcrun: No such file or directory
4410 Default NMODL flags:
4411 make -f test/external/tqperf/CMakeFiles/NRN_TEST_nrnivmodl_f7f437
ac4f0ea140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c.dir/bui
ld.make test/external/tqperf/CMakeFiles/NRN_TEST_nrnivmodl_f7f437a
c4f0ea140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c.dir/depe
nd
4412 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo'
4413 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron
-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2
nf42sq6duhuwlyvzomzs/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-
git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2n
f42sq6duhuwlyvzomzs/spack-src/test/external/tqperf /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo /gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mn
oo/test/external/tqperf /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6d
uhuwlyvzomzs/spack-build-mo7mnoo/test/external/tqperf/CMakeFiles/N
RN_TEST_nrnivmodl_f7f437ac4f0ea140e809f1bdd7f7d03201e354b9a2041597
f8faaf7fb7aebb7c.dir/DependInfo.cmake "--color="
4414 [ 54%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33
00792f8f757b926b965c058a4d6ee876/vecevent.mod
4415 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-
3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/testcor
enrn//mod/vecevent.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073
aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6du
huwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/b62f97c7d3f6d905c77
4d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
>> 4416 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4417 [ 54%] Building special[-core] for test group external_ringtest_nr
n
4418 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6
620c807381c850fedcdd74295 && cmake -E env NEURONHOME=/gpfs/bbp\.cs
cs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-b
uild/spack-stage-neuron-git\.e073aa9242973a8e569db9979da021052107a
808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/s
hare/nrn NRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336162/spack-build/spack-stage-neuron-git\.e073aa9
242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuw
lyvzomzs/spack-build-mo7mnoo PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-ne
uron-git\.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoo
uu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/bin:/gpfs/bbp\.cscs\
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.
0-skylake/readline-8\.2-pdugg7/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-co
verage-7\.2\.6-wuxetk/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02
-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3
\.2-lrf2u3/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/bi
n:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/bin:/gpfs/bbp
\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/ins
tall_gcc-12\.3\.0-skylake/nmodl-git\.066bd57e519c25975f7a57ac8961f
b297160c16f_develop-pybnaf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy-
1\.11\.1-t5tove/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1
-tabj2m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5d
ylnc/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/software/install_oneapi-2023\.2\.0-skylake/libsonata-report-
git\.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/bin:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12\.3\.0-skylake/gettext-0\.22\.3-nbi5w5/bin:/gpfs/bbp\.cs
cs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.
3\.0-skylake/pigz-2\.7-dwjcgu/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/ncurse
s-6\.4-6kdbhv/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12\.3\.0-skylake/pkgconf-1\.9\.5-e533uu
/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_application
s/install_gcc-12\.3\.0-skylake/gmake-4\.4\.1-swjylu/bin:/gpfs/bbp\
.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2\.3\.0-skylake/xz-5\.4\.1-wwn5en/bin:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/zs
td-1\.5\.5-aivjoo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_applications/install_gcc-12\.3\.0-skylake/bzip2-1\.0\.8-vdqw
mg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals
/install_gcc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\
.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch/ssd/a
pps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/in
tel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-
12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.csc
s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0
-skylake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.
6\.3-edx4lf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_
externals/install_gcc-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install
_gcc-12\.3\.0-skylake/bison-3\.8\.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/lib/spa
ck/env/oneapi:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P219873/J1336158/spack/lib/spack/env/case-insensitive:/gpfs/bbp
\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spa
ck/lib/spack/env:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023
\.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake
/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gp
fs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_g
cc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skyl
ake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/202
4-02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27
\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.6\.3-edx4lf/b
in:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/ins
tall_gcc-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/gpfs/bbp\.csc
s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0
-skylake/m4-1\.4\.19-wtcpud/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2
024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/bison-3\.8\
.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_co
mpilers/install_gcc-4\.8\.5-haswell/binutils-2\.41-o6yabj/bin:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gc
c-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compile
r/2023\.2\.1/linux/lib/oclfpga/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-one
api-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin/inte
l64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/in
stall_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y
/compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/bootstrap/store/linux-centos7-x86_64/g
cc-10\.2\.1/patchelf-0\.18\.0-afv7arjarb7nzmlh7c5slkfxykybuqce/bin
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/insta
ll_gcc-12\.3\.0-skylake/ccache-4\.7\.4-eompz5/bin:/gpfs/bbp\.cscs\
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/bin:
/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/instal
l_gcc-12\.3\.0-skylake/git-2\.42\.0-sie4gc/bin:/opt/clmgr/sbin:/op
t/clmgr/bin:/opt/sgi/sbin:/opt/sgi/bin:/usr/lib64/qt-3\.3/bin:/usr
/lib64/ccache:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sb
in:/gpfs/bbp\.cscs\.ch/ssd/apps/bb5/systemtools:/opt/c3/bin:/opt/d
dn/ime/bin:/opt/puppetlabs/bin:/sbin:/bin:/gpfs/bbp\.cscs\.ch/home
/bbpcihpcproj12/\.local/bin:/gpfs/bbp\.cscs\.ch/home/bbpcihpcproj1
2/bin LD_LIBRARY_PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git\.e0
73aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6
duhuwlyvzomzs/spack-build-mo7mnoo/lib:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/intel
-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/lib/intel64:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\
.3\.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/li
b/intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/li
b:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/inst
all_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/c
ompiler/2023\.2\.1/linux/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024
-02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-co
mpilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/lib/x64:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-
4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/
2023\.2\.1/linux/lib/oclfpga/host/linux64/lib:/gpfs/bbp\.cscs\.ch/
ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswel
l/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/lin
ux/compiler/lib/intel64_lin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-
02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.
p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12\.3\.0-skylake/hdf5-1\.14\.3-5o77ye
/lib CORENRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336162/spack-build/spack-stage-neuron-git\.e073aa9
242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuw
lyvzomzs/spack-build-mo7mnoo PYTHONPATH=/gpfs/bbp\.cscs\.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-st
age-neuron-git\.e073aa9242973a8e569db9979da021052107a808_develop-m
o7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/lib/python:/gp
fs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
62/spack-build/spack-stage-neuron-git\.e073aa9242973a8e569db9979da
021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/t
est/rxd:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
9873/software/install_gcc-12\.3\.0-skylake/nmodl-git\.066bd57e519c
25975f7a57ac8961fb297160c16f_develop-pybnaf/lib:/gpfs/bbp\.cscs\.c
h/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-
skylake/py-pytest-cov-4\.0\.0-z5nf6n/lib/python3\.11/site-packages
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/in
stall_gcc-12\.3\.0-skylake/py-coverage-7\.2\.6-wuxetk/lib/python3\
.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3\.2-lrf2
u3/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/
2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-inic
onfig-2\.0\.0-mvxx6g/lib/python3\.11/site-packages:/gpfs/bbp\.cscs
\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\
.0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/python3\.11/site-packages:
/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/ins
tall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/lib/python3\.11
/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/
lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/202
4-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy-1
\.11\.1-t5tove/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/s
sd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-sky
lake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.11/site-packages:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_g
cc-12\.3\.0-skylake/py-packaging-23\.1-uqml2t/lib/python3\.11/site
-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applic
ations/install_gcc-12\.3\.0-skylake/py-pyyaml-5\.4\.1-2inh3r/lib/p
ython3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.
11\.1-tabj2m/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd
/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyla
ke/py-jinja2-3\.1\.2-7valid/lib/python3\.11/site-packages:/gpfs/bb
p\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc
-12\.3\.0-skylake/py-markupsafe-2\.1\.3-r3ehtm/lib/python3\.11/sit
e-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appli
cations/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5dy
lnc/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-set
uptools-68\.0\.0-p3xbqx/lib/python3\.11/site-packages:/gpfs/bbp\.c
scs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\
.3\.0-skylake/py-pip-23\.1\.2-77ku3v/lib/python3\.11/site-packages
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/in
stall_gcc-12\.3\.0-skylake/py-packaging-23\.1-uqml2t/lib/python3\.
11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_applications/install_gcc-12\.3\.0-skylake/py-iniconfig-2\.0\.0-mv
xx6g/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-mp
math-1\.2\.1-4fflyi/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.
0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/python3\.11/site-packages:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12\.3\.0-skylake/py-sympy-1\.11\.1-t5tove/lib/python3\.11/
site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_ap
plications/install_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/l
ib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024
-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-setuptoo
ls-68\.0\.0-p3xbqx/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.
ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0
-skylake/py-pytest-7\.3\.2-lrf2u3/lib/python3\.11/site-packages:/g
pfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/lib/python3\.11/sit
e-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appli
cations/install_gcc-12\.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/lib/
python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02
-01/stage_applications/install_gcc-12\.3\.0-skylake/py-coverage-7\
.2\.6-wuxetk/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd
/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyla
ke/py-pytest-cov-4\.0\.0-z5nf6n/lib/python3\.11/site-packages:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc
c-12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/misc:/gpfs/bbp\.cscs\.ch/
ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skyla
ke/ninja-1\.11\.1-nxtlgo/misc /gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf
42sq6duhuwlyvzomzs/spack-build-mo7mnoo/bin/nrnivmodl .
4419 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo'
4420 make -f test/external/tqperf/CMakeFiles/NRN_TEST_nrnivmodl_f7f437
ac4f0ea140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c.dir/bui
ld.make test/external/tqperf/CMakeFiles/NRN_TEST_nrnivmodl_f7f437a
c4f0ea140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c.dir/buil
d
4421 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo'
4422 [ 54%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
...
4445 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
4446 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4447 [ 54%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33
00792f8f757b926b965c058a4d6ee876/hhderiv.mod
4448 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-
3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/testcor
enrn//mod/hhderiv.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duh
uwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/b62f97c7d3f6d905c774
d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod
4449 -> NMODL .././halfgap.mod
4450 -> Compiling mod_func.cpp
>> 4451 make[3]: xcrun: No such file or directory
4452 Default NMODL flags:
4453 Translating halfgap.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/bbd7c82eee28b
931214a8172bb776ba66c406a6620c807381c850fedcdd74295/x86_64/halfgap
.cpp
4454 Thread Safe
4455 [ 54%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
4456 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/red
uced_dentate//mechanisms/Gfluct3.mod /gpfs/bbp.cscs.ch/ssd/gitlab_
map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-n
euron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoo
uu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/53c43
2f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct
3.mod
>> 4457 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4458 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/test/nrnivmodl/bbd7c82eee28b931214a8172bb77
6ba66c406a6620c807381c850fedcdd74295/x86_64/halfgap.cpp
4459 [ 54%] Generating ../../nrnivmodl/f7f437ac4f0ea140e809f1bdd7f7d032
01e354b9a2041597f8faaf7fb7aebb7c/invlfiresha.mod
4460 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/tqperf && /gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.
7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stag
e-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7m
noouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/tqperf//modx
/invlfiresha.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyv
zomzs/spack-build-mo7mnoo/test/nrnivmodl/f7f437ac4f0ea140e809f1bdd
7f7d03201e354b9a2041597f8faaf7fb7aebb7c/invlfiresha.mod
4461 [ 54%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33
00792f8f757b926b965c058a4d6ee876/hhkin.mod
4462 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-
3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/testcor
enrn//mod/hhkin.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9
242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuw
lyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/b62f97c7d3f6d905c774d6
4e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod
4463 x86_64/corenrn/mod2c/pattern.cpp:396:13: warning: loop not vectori
zed: the optimizer was unable to perform the requested transformat
ion; the transformation might be disabled or specified as part of
an unsupported transformation ordering [-Wpass-failed=transform-wa
rning]
...
4652 Translating vclmp1.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/263a5c542e063e
e6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/vclmp1.c
pp
4653 Notice: VERBATIM blocks are not thread safe
4654 Notice: This mechanism cannot be used with CVODE
4655 Notice: LINEAR is not thread safe.
4656 Translating vlag.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e
073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq
6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/263a5c542e063ee6
760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/vlag.cpp
4657 Thread Safe
>> 4658 make[3]: xcrun: No such file or directory
4659 Default NMODL flags:
4660 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/cachan.cpp
4661 [ 55%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/holdingi.mod
4662 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/red
uced_dentate//mechanisms/holdingi.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mno
ouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdi
ngi.mod
4663 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/cabpump.cpp
4664 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/cacum.cpp
>> 4665 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4666 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/cacur.cpp
4667 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/bbd7c82eee28b9
31214a8172bb776ba66c406a6620c807381c850fedcdd74295/x86_64'
4668 Successfully created x86_64/special
4669 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo'
4670 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/cadif.cpp
4671 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/cadifusl.cpp
...
4713 [ 55%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/kcaPR.mod
4714 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/red
uced_dentate//mechanisms/kcaPR.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu
7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/53c432f
7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mo
d
4715 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyv
zomzs/spack-build-mo7mnoo MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
4716 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/b62f97c7d3f6d
905c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
4717 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4718 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/nacum.cpp
>> 4719 make[3]: xcrun: No such file or directory
4720 Default NMODL flags:
4721 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/nacur.cpp
4722 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/nadifl.cpp
4723 [NMODL] [warning] :: Can not inline function call to mynormrand
4724 [NMODL] [warning] :: Can not inline function call to mynormrand
4725 [NMODL] [warning] :: Can not inline function call to mynormrand
4726 [NMODL] [warning] :: Can not inline function call to mynormrand
>> 4727 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4728 [ 55%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/CaDynamics_DC0.mod
4729 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/CaDynamics_DC0.mod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build
-mo7mnoo/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933
d5963dc6fd47c3be88641a/CaDynamics_DC0.mod
4730 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/nonlin.cpp
4731 [ 55%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/na3n.mod
4732 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/red
uced_dentate//mechanisms/na3n.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neur
on-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7
j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/53c432f7
080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
4733 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
...
5126 4 warnings generated.
5127 [ 58%] Generating ../../nrnivmodl/14c92ceb412f1b4e766bfda05bec75b2
d552a2f4499313751329f0689cf9faab/fi_stdp.mod
5128 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/olfactory-bulb-3d && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/o
lfactory-bulb-3d/sim/fi_stdp.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuro
n-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j
2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/14c92ceb4
12f1b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/fi_stdp.mo
d
5129 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyv
zomzs/spack-build-mo7mnoo MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
5130 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/53c432f7080fe
7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
5131 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5132 make[3]: xcrun: No such file or directory
5133 Default NMODL flags:
5134 [ 58%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/gap.mod
5135 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/gap.mod /gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-b
uild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a8
08_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/te
st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4
7c3be88641a/gap.mod
>> 5136 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5137 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5138 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5139 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5140 [ 58%] Generating ../../nrnivmodl/14c92ceb412f1b4e766bfda05bec75b2
d552a2f4499313751329f0689cf9faab/gap.mod
5141 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/olfactory-bulb-3d && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/o
lfactory-bulb-3d/sim/gap.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/14c92ceb412f1
b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/gap.mod
5142 x86_64/corenrn/mod2c/expsyn.cpp:280:9: warning: loop not vectorize
d: the optimizer was unable to perform the requested transformatio
n; the transformation might be disabled or specified as part of an
unsupported transformation ordering [-Wpass-failed=transform-warn
ing]
...
5218 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kdb.mod /gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-b
uild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a8
08_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/te
st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4
7c3be88641a/kdb.mod
5219 [ 58%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/kdrbca1.mod
5220 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kdrbca1.mod /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spa
ck-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210521
07a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mno
o/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc
6fd47c3be88641a/kdrbca1.mod
5221 Mod files: "./Gfluct.mod" "./ThreshDetect.mod"make -f CMakeFiles/
generate-neurondemo-mechanism-library.dir/build.make CMakeFiles/ge
nerate-neurondemo-mechanism-library.dir/depend
5222 "./ampanmda.mod"make[2]: Entering directory '/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spac
k-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develo
p-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo'
5223 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron
-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2
nf42sq6duhuwlyvzomzs/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-
git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2n
f42sq6duhuwlyvzomzs/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf
42sq6duhuwlyvzomzs/spack-build-mo7mnoo /gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage
-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mn
oouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/sp
ack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_deve
lop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/CMakeFile
s/generate-neurondemo-mechanism-library.dir/DependInfo.cmake "--co
lor="
>> 5224 "./distrt.mod" "./fi.mod"x86_64/corenrn/mod2c/hhderiv.cpp:38:10: f
atal error: 'Eigen/Core' file not found
5225 #include <Eigen/Core>
5226 ^~~~~~~~~~~~
5227 1 error generated.
>> 5228 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/hhderiv.o] Error 1
5229 make[3]: *** Waiting for unfinished jobs....
5230 "./fi_stdp.mod" "./gap.mod" "./kamt.mod"make[2]: Leaving director
y '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo'
5231 make -f CMakeFiles/generate-neurondemo-mechanism-library.dir/buil
d.make CMakeFiles/generate-neurondemo-mechanism-library.dir/build
5232 [ 58%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/kdrca1.mod
5233 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kdrca1.mod /gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo
/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6
fd47c3be88641a/kdrca1.mod
5234 "./kdrmt.mod"make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-s
tage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-m
o7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo'
>> 5235 "./ks.mod" "./naxn.mod"x86_64/corenrn/mod2c/hhkin.cpp:38:10: fatal
error: 'Eigen/Core' file not found
5236 #include <Eigen/Core>
5237 ^~~~~~~~~~~~
5238 1 error generated.
>> 5239 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/hhkin.o] Error 1
5240 "./orn.mod" "./ostimhelper.mod"
5241
5242 Creating 'x86_64' directory for .o files.
5243
5244 [ 58%] Generating share/nrn/demo/release/x86_64/special, share/nrn
/demo/release/x86_64/libnrnmech.so
5245 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/share/nrn/demo/release && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E env NEURONHOME=/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage
-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mn
oouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/share/nrn NRNHOME=
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build
-mo7mnoo PATH=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdug
g7/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_application
s/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk/bin:/gpfs/bb
p.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2.3.0-skylake/py-pytest-7.3.2-lrf2u3/bin:/gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-
pip-23.1.2-77ku3v/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
/bin:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/
software/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a
57ac8961fb297160c16f_develop-pybnaf/bin:/gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-s
ympy-1.11.1-t5tove/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/s
tage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-ta
bj2m/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applicati
ons/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc/bin:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/softw
are/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa
710d6766ce23cd151a1855190271bd8_develop-fz3oxt/bin:/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-s
kylake/gettext-0.22.3-nbi5w5/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dw
jcgu/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applicati
ons/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/bin:/gpfs/bbp.cs
cs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.
0-skylake/pkgconf-1.9.5-e533uu/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/
2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4
.1-swjylu/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en/bin:/gpfs/bbp.
cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.
3.0-skylake/zstd-1.5.5-aivjoo/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2
024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.
8-vdqwmg/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_exter
nals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/bin:/gpfs/bbp
.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.
0-skylake/python-3.11.6-bj4i6m/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/
2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi
-mkl-2023.2.0-twl2n4/mkl/2023.2.0/bin/intel64:/gpfs/bbp.cscs.ch/ss
d/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/h
pe-mpi-2.27.p1.hmpt-6rr256/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxt
lgo/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/
install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf/bin:/gpfs/bbp.cscs.ch
/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylak
e/cmake-3.27.7-slyoes/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-0
1/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg/bi
n:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13
36158/spack/lib/spack/env/oneapi:/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336158/spack/lib/spack/env/case-inse
nsitive:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2198
73/J1336158/spack/lib/spack/env:/gpfs/bbp.cscs.ch/ssd/apps/bsd/202
4-02-01/stage_compilers/install_gcc-4.8.5-haswell/intel-oneapi-com
pilers-2023.2.1-tnua5y/compiler/2023.2.1/linux/bin:/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
ake/intel-oneapi-mkl-2023.2.0-twl2n4/mkl/2023.2.0/bin/intel64:/gpf
s/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-
12.3.0-skylake/python-3.11.6-bj4i6m/bin:/gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1
.11.1-nxtlgo/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_e
xternals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/bi
n:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/instal
l_gcc-12.3.0-skylake/flex-2.6.3-edx4lf/bin:/gpfs/bbp.cscs.ch/ssd/a
pps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmak
e-3.27.7-slyoes/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/m4-1.4.19-wtcpud/bin:/gpfs/
bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12
.3.0-skylake/bison-3.8.2-qcx3sg/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_compilers/install_gcc-4.8.5-haswell/binutils-2.4
1-o6yabj/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compi
lers/install_gcc-4.8.5-haswell/intel-oneapi-compilers-2023.2.1-tnu
a5y/compiler/2023.2.1/linux/lib/oclfpga/bin:/gpfs/bbp.cscs.ch/ssd/
apps/bsd/2024-02-01/stage_compilers/install_gcc-4.8.5-haswell/inte
l-oneapi-compilers-2023.2.1-tnua5y/compiler/2023.2.1/linux/bin/int
el64:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/ins
tall_gcc-4.8.5-haswell/intel-oneapi-compilers-2023.2.1-tnua5y/comp
iler/2023.2.1/linux/bin:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/bootstrap/store/linux-centos7-x86_64/gcc-10.2.1
/patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce/bin:/gpfs/bbp.cs
cs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-s
kylake/ccache-4.7.4-eompz5/bin:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P219873/J1336158/spack/bin:/gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/gi
t-2.42.0-sie4gc/bin:/opt/clmgr/sbin:/opt/clmgr/bin:/opt/sgi/sbin:/
opt/sgi/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin
:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/gpfs/bbp.cscs.ch/ssd/app
s/bb5/systemtools:/opt/c3/bin:/opt/ddn/ime/bin:/opt/puppetlabs/bin
:/sbin:/bin:/gpfs/bbp.cscs.ch/home/bbpcihpcproj12/.local/bin:/gpfs
/bbp.cscs.ch/home/bbpcihpcproj12/bin LD_LIBRARY_PATH=/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-bui
ld/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808
_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/lib:
/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4/mkl/2023.2.0/l
ib/intel64:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externa
ls/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4/mkl
/2023.2.0/lib/intel64:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st
age_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr2
56/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/i
nstall_gcc-4.8.5-haswell/intel-oneapi-compilers-2023.2.1-tnua5y/co
mpiler/2023.2.1/linux/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-0
1/stage_compilers/install_gcc-4.8.5-haswell/intel-oneapi-compilers
-2023.2.1-tnua5y/compiler/2023.2.1/linux/lib/x64:/gpfs/bbp.cscs.ch
/ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-4.8.5-haswell
/intel-oneapi-compilers-2023.2.1-tnua5y/compiler/2023.2.1/linux/li
b/oclfpga/host/linux64/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_compilers/install_gcc-4.8.5-haswell/intel-oneapi-compiler
s-2023.2.1-tnua5y/compiler/2023.2.1/linux/compiler/lib/intel64_lin
:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install
_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib:/gpfs/bbp.cscs
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-
skylake/hdf5-1.14.3-5o77ye/lib CORENRNHOME=/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-s
tage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-m
o7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo PYTHONPATH=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162
/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021
052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo
7mnoo/lib/python:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyv
zomzs/spack-src/test/rxd:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/software/install_gcc-12.3.0-skylake/nmodl-git.
066bd57e519c25975f7a57ac8961fb297160c16f_develop-pybnaf/lib:/gpfs/
bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc
-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n/lib/python3.11/site-pac
kages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications
/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk/lib/python3.1
1/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ap
plications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3/lib/p
ython3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/
stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-m
vxx6g/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/
2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy
-1.0.0-6su7kv/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/a
pps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/p
y-numpy-1.26.1-elr5pn/lib/python3.11/site-packages:/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-s
kylake/py-mpi4py-3.1.4-x733hw/lib/python3.11/site-packages:/gpfs/b
bp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-
12.3.0-skylake/py-sympy-1.11.1-t5tove/lib/python3.11/site-packages
:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi/lib/python3.11/site-
packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applicati
ons/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t/lib/python
3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r/li
b/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.
1-tabj2m/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jin
ja2-3.1.2-7valid/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ss
d/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylak
e/py-markupsafe-2.1.3-r3ehtm/lib/python3.11/site-packages:/gpfs/bb
p.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2.3.0-skylake/py-find-libpython-0.3.1-5dylnc/lib/python3.11/site-p
ackages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applicatio
ns/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/pyth
on3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v/li
b/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1
-uqml2t/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-inic
onfig-2.0.0-mvxx6g/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/
ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skyl
ake/py-mpmath-1.2.1-4fflyi/lib/python3.11/site-packages:/gpfs/bbp.
cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.
3.0-skylake/py-pluggy-1.0.0-6su7kv/lib/python3.11/site-packages:/g
pfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install
_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove/lib/python3.11/site-pac
kages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications
/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn/lib/python3.11/
site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/li
b/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l
rf2u3/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/
2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23
.1.2-77ku3v/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-
mpi4py-3.1.4-x733hw/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch
/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-sky
lake/py-coverage-7.2.6-wuxetk/lib/python3.11/site-packages:/gpfs/b
bp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-
12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n/lib/python3.11/site-pack
ages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/ins
tall_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo/misc:/gpfs/bbp.cscs.ch
/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylak
e/ninja-1.11.1-nxtlgo/misc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.
e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42s
q6duhuwlyvzomzs/spack-build-mo7mnoo/bin/nrnivmodl
...
5321 2 warnings generated.
5322 -> NMODL ../khhchan.mod
5323 -> NMODL ../nacaex.mod
5324 [ 58%] Building special[-core] for test group channel_benchmark_hi
ppo
5325 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-bu
ild-mo7mnoo/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552
933d5963dc6fd47c3be88641a && cmake -E env NEURONHOME=/gpfs/bbp\.cs
cs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-b
uild/spack-stage-neuron-git\.e073aa9242973a8e569db9979da021052107a
808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/s
hare/nrn NRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336162/spack-build/spack-stage-neuron-git\.e073aa9
242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuw
lyvzomzs/spack-build-mo7mnoo PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-ne
uron-git\.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoo
uu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/bin:/gpfs/bbp\.cscs\
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.
0-skylake/readline-8\.2-pdugg7/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-co
verage-7\.2\.6-wuxetk/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02
-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3
\.2-lrf2u3/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/bi
n:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/bin:/gpfs/bbp
\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/ins
tall_gcc-12\.3\.0-skylake/nmodl-git\.066bd57e519c25975f7a57ac8961f
b297160c16f_develop-pybnaf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy-
1\.11\.1-t5tove/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1
-tabj2m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5d
ylnc/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/software/install_oneapi-2023\.2\.0-skylake/libsonata-report-
git\.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/bin:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12\.3\.0-skylake/gettext-0\.22\.3-nbi5w5/bin:/gpfs/bbp\.cs
cs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.
3\.0-skylake/pigz-2\.7-dwjcgu/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/ncurse
s-6\.4-6kdbhv/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12\.3\.0-skylake/pkgconf-1\.9\.5-e533uu
/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_application
s/install_gcc-12\.3\.0-skylake/gmake-4\.4\.1-swjylu/bin:/gpfs/bbp\
.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2\.3\.0-skylake/xz-5\.4\.1-wwn5en/bin:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/zs
td-1\.5\.5-aivjoo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_applications/install_gcc-12\.3\.0-skylake/bzip2-1\.0\.8-vdqw
mg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals
/install_gcc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\
.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch/ssd/a
pps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/in
tel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-
12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.csc
s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0
-skylake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.
6\.3-edx4lf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_
externals/install_gcc-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install
_gcc-12\.3\.0-skylake/bison-3\.8\.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/lib/spa
ck/env/oneapi:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P219873/J1336158/spack/lib/spack/env/case-insensitive:/gpfs/bbp
\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spa
ck/lib/spack/env:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023
\.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake
/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gp
fs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_g
cc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skyl
ake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/202
4-02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27
\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.6\.3-edx4lf/b
in:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/ins
tall_gcc-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/gpfs/bbp\.csc
s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0
-skylake/m4-1\.4\.19-wtcpud/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2
024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/bison-3\.8\
.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_co
mpilers/install_gcc-4\.8\.5-haswell/binutils-2\.41-o6yabj/bin:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gc
c-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compile
r/2023\.2\.1/linux/lib/oclfpga/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-one
api-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin/inte
l64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/in
stall_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y
/compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/bootstrap/store/linux-centos7-x86_64/g
cc-10\.2\.1/patchelf-0\.18\.0-afv7arjarb7nzmlh7c5slkfxykybuqce/bin
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/insta
ll_gcc-12\.3\.0-skylake/ccache-4\.7\.4-eompz5/bin:/gpfs/bbp\.cscs\
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/bin:
/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/instal
l_gcc-12\.3\.0-skylake/git-2\.42\.0-sie4gc/bin:/opt/clmgr/sbin:/op
t/clmgr/bin:/opt/sgi/sbin:/opt/sgi/bin:/usr/lib64/qt-3\.3/bin:/usr
/lib64/ccache:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sb
in:/gpfs/bbp\.cscs\.ch/ssd/apps/bb5/systemtools:/opt/c3/bin:/opt/d
dn/ime/bin:/opt/puppetlabs/bin:/sbin:/bin:/gpfs/bbp\.cscs\.ch/home
/bbpcihpcproj12/\.local/bin:/gpfs/bbp\.cscs\.ch/home/bbpcihpcproj1
2/bin LD_LIBRARY_PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git\.e0
73aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6
duhuwlyvzomzs/spack-build-mo7mnoo/lib:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/intel
-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/lib/intel64:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\
.3\.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/li
b/intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/li
b:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/inst
all_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/c
ompiler/2023\.2\.1/linux/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024
-02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-co
mpilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/lib/x64:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-
4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/
2023\.2\.1/linux/lib/oclfpga/host/linux64/lib:/gpfs/bbp\.cscs\.ch/
ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswel
l/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/lin
ux/compiler/lib/intel64_lin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-
02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.
p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12\.3\.0-skylake/hdf5-1\.14\.3-5o77ye
/lib CORENRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336162/spack-build/spack-stage-neuron-git\.e073aa9
242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuw
lyvzomzs/spack-build-mo7mnoo PYTHONPATH=/gpfs/bbp\.cscs\.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-st
age-neuron-git\.e073aa9242973a8e569db9979da021052107a808_develop-m
o7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-mo7mnoo/lib/python:/gp
fs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
62/spack-build/spack-stage-neuron-git\.e073aa9242973a8e569db9979da
021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-src/t
est/rxd:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
9873/software/install_gcc-12\.3\.0-skylake/nmodl-git\.066bd57e519c
25975f7a57ac8961fb297160c16f_develop-pybnaf/lib:/gpfs/bbp\.cscs\.c
h/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-
skylake/py-pytest-cov-4\.0\.0-z5nf6n/lib/python3\.11/site-packages
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/in
stall_gcc-12\.3\.0-skylake/py-coverage-7\.2\.6-wuxetk/lib/python3\
.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3\.2-lrf2
u3/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/
2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-inic
onfig-2\.0\.0-mvxx6g/lib/python3\.11/site-packages:/gpfs/bbp\.cscs
\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\
.0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/python3\.11/site-packages:
/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/ins
tall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/lib/python3\.11
/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/
lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/202
4-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy-1
\.11\.1-t5tove/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/s
sd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-sky
lake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.11/site-packages:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_g
cc-12\.3\.0-skylake/py-packaging-23\.1-uqml2t/lib/python3\.11/site
-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applic
ations/install_gcc-12\.3\.0-skylake/py-pyyaml-5\.4\.1-2inh3r/lib/p
ython3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.
11\.1-tabj2m/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd
/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyla
ke/py-jinja2-3\.1\.2-7valid/lib/python3\.11/site-packages:/gpfs/bb
p\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc
-12\.3\.0-skylake/py-markupsafe-2\.1\.3-r3ehtm/lib/python3\.11/sit
e-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appli
cations/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5dy
lnc/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-set
uptools-68\.0\.0-p3xbqx/lib/python3\.11/site-packages:/gpfs/bbp\.c
scs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\
.3\.0-skylake/py-pip-23\.1\.2-77ku3v/lib/python3\.11/site-packages
:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/in
stall_gcc-12\.3\.0-skylake/py-packaging-23\.1-uqml2t/lib/python3\.
11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage
_applications/install_gcc-12\.3\.0-skylake/py-iniconfig-2\.0\.0-mv
xx6g/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-mp
math-1\.2\.1-4fflyi/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.
0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/python3\.11/site-packages:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12\.3\.0-skylake/py-sympy-1\.11\.1-t5tove/lib/python3\.11/
site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_ap
plications/install_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/l
ib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024
-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-setuptoo
ls-68\.0\.0-p3xbqx/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.
ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0
-skylake/py-pytest-7\.3\.2-lrf2u3/lib/python3\.11/site-packages:/g
pfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/lib/python3\.11/sit
e-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appli
cations/install_gcc-12\.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/lib/
python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02
-01/stage_applications/install_gcc-12\.3\.0-skylake/py-coverage-7\
.2\.6-wuxetk/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd
/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyla
ke/py-pytest-cov-4\.0\.0-z5nf6n/lib/python3\.11/site-packages:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc
c-12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/misc:/gpfs/bbp\.cscs\.ch/
ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skyla
ke/ninja-1\.11\.1-nxtlgo/misc /gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf
42sq6duhuwlyvzomzs/spack-build-mo7mnoo/bin/nrnivmodl -coreneuron .
5326 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/b62f97c7d3f6d9
05c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
>> 5327 make[2]: *** [test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivm
odl_b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee8
76.dir/build.make:95: test/nrnivmodl/b62f97c7d3f6d905c774d64e10128
b3300792f8f757b926b965c058a4d6ee876/x86_64/special] Error 2
5328 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo'
>> 5329 make[1]: *** [CMakeFiles/Makefile2:8597: test/external/testcorenrn
/CMakeFiles/NRN_TEST_nrnivmodl_b62f97c7d3f6d905c774d64e10128b33007
92f8f757b926b965c058a4d6ee876.dir/all] Error 2
5330 make[1]: *** Waiting for unfinished jobs....
5331 Translating capump.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/share/nrn/demo/release/x86_64
/capump.cpp
5332 Thread Safe
5333 Translating invlfire.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf
42sq6duhuwlyvzomzs/spack-build-mo7mnoo/share/nrn/demo/release/x86_
64/invlfire.cpp
5334 Thread Safe
5335 -> NMODL ../nachan.mod
...
5379 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/share/nrn/demo/release/x86_64/release.cpp
5380 => Binary creating x86_64/special-core
5381 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/share/nrn/demo/release/x86_64
/./libnrnmech.so"
5382 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyv
zomzs/spack-build-mo7mnoo MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
5383 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/14c92ceb412f1
b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
5384 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5385 make[3]: xcrun: No such file or directory
5386 Default NMODL flags:
>> 5387 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5388 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5389 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5390 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5391 Mod files: "./Ca.mod"[NMODL] [warning] :: SYMTAB :: step [Argument
] in plast shadows <extern_method> definition in NMODL_GLOBAL
5392 [NMODL] [warning] :: SYMTAB :: w [Argument] in NetReceiveBlock sha
dows <assigned_definition> definition in NMODL_GLOBAL
5393 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
...
5539 #pragma omp simd
5540 ^
5541 x86_64/corenrn/mod2c/svclmp.cpp:420:9: warning: loop not vectorize
d: the optimizer was unable to perform the requested transformatio
n; the transformation might be disabled or specified as part of an
unsupported transformation ordering [-Wpass-failed=transform-warn
ing]
5542 #pragma omp simd
5543 ^
5544 3 warnings generated.
>> 5545 x86_64/corenrn/mod2c/Aradi_Ca.cpp:38:10: fatal error: 'Eigen/Core'
file not found
5546 #include <Eigen/Core>
5547 ^~~~~~~~~~~~
5548 1 error generated.
>> 5549 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/Aradi_Ca.o] Error 1
5550 make[3]: *** Waiting for unfinished jobs....
5551 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyv
zomzs/spack-build-mo7mnoo MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
5552 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf4
2sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/3a24bd33c51ee
30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a'
5553 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5554 make[3]: xcrun: No such file or directory
5555 Default NMODL flags:
>> 5556 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
>> 5557 x86_64/corenrn/mod2c/Aradi_CadepK.cpp:38:10: fatal error: 'Eigen/C
ore' file not found
5558 #include <Eigen/Core>
5559 ^~~~~~~~~~~~
5560 1 error generated.
>> 5561 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/Aradi_CadepK.o] Error 1
5562 x86_64/corenrn/mod2c/Gfluct.cpp:415:13: warning: loop not vectoriz
ed: the optimizer was unable to perform the requested transformati
on; the transformation might be disabled or specified as part of a
n unsupported transformation ordering [-Wpass-failed=transform-war
ning]
5563 #pragma omp simd
5564 ^
5565 x86_64/corenrn/mod2c/Gfluct.cpp:517:9: warning: loop not vectorize
d: the optimizer was unable to perform the requested transformatio
n; the transformation might be disabled or specified as part of an
unsupported transformation ordering [-Wpass-failed=transform-warn
ing]
5566 #pragma omp simd
5567 ^
...
5617 ^
5618 x86_64/corenrn/mod2c/Aradi_KDRf.cpp:407:9: warning: loop not vecto
rized: the optimizer was unable to perform the requested transform
ation; the transformation might be disabled or specified as part o
f an unsupported transformation ordering [-Wpass-failed=transform-
warning]
5619 #pragma omp simd
5620 ^
5621 3 warnings generated.
5622 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/53c432f7080fe7
b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
>> 5623 make[2]: *** [test/external/reduced_dentate/CMakeFiles/NRN_TEST_nr
nivmodl_53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5
edfead.dir/build.make:117: test/nrnivmodl/53c432f7080fe7b786e16536
f2d17f96d387425d200c645a6b4cec93b5edfead/x86_64/special] Error 2
5624 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo'
>> 5625 make[1]: *** [CMakeFiles/Makefile2:8125: test/external/reduced_den
tate/CMakeFiles/NRN_TEST_nrnivmodl_53c432f7080fe7b786e16536f2d17f9
6d387425d200c645a6b4cec93b5edfead.dir/all] Error 2
5626 x86_64/corenrn/mod2c/unitstest.cpp:283:13: warning: loop not vecto
rized: the optimizer was unable to perform the requested transform
ation; the transformation might be disabled or specified as part o
f an unsupported transformation ordering [-Wpass-failed=transform-
warning]
5627 #pragma omp simd
5628 ^
5629 x86_64/corenrn/mod2c/unitstest.cpp:331:9: warning: loop not vector
ized: the optimizer was unable to perform the requested transforma
tion; the transformation might be disabled or specified as part of
an unsupported transformation ordering [-Wpass-failed=transform-w
arning]
5630 #pragma omp simd
5631 ^
...
5840 3 warnings generated.
5841 [NMODL] [warning] :: SYMTAB :: cai [Argument] in evaluate_fct shad
ows <parameter read_ion> definition in NMODL_GLOBAL
5842 [NMODL] [warning] :: SYMTAB :: cai [Argument] in evaluate_fct shad
ows <parameter read_ion> definition in NMODL_GLOBAL
5843 [NMODL] [warning] :: SYMTAB :: cai [Argument] in evaluate_fct shad
ows <parameter read_ion> definition in NMODL_GLOBAL
5844 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/c35d2f235e0f38
60fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64/./libnrn
mech.so"
5845 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6d
uhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/c35d2f235e0f3860fb
ecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64/./special" L
DFLAGS are:
>> 5846 x86_64/corenrn/mod2c/orn.cpp:38:10: fatal error: 'Eigen/Core' file
not found
5847 #include <Eigen/Core>
5848 ^~~~~~~~~~~~
5849 1 error generated.
>> 5850 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/orn.o] Error 1
5851 make[3]: *** Waiting for unfinished jobs....
5852 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/c35d2f235e0f38
60fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64'
5853 Successfully created x86_64/special
5854 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo'
5855 x86_64/corenrn/mod2c/ks.cpp:300:13: warning: loop not vectorized:
the optimizer was unable to perform the requested transformation;
the transformation might be disabled or specified as part of an un
supported transformation ordering [-Wpass-failed=transform-warning
]
5856 #pragma omp simd
...
5875 3 warnings generated.
5876 x86_64/corenrn/mod2c/netstim.cpp:487:13: warning: loop not vectori
zed: the optimizer was unable to perform the requested transformat
ion; the transformation might be disabled or specified as part of
an unsupported transformation ordering [-Wpass-failed=transform-wa
rning]
5877 #pragma omp simd
5878 ^
5879 1 warning generated.
5880 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/14c92ceb412f1b
4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
>> 5881 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_
nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068
9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd
a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2
5882 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo'
>> 5883 make[1]: *** [CMakeFiles/Makefile2:9851: test/external/olfactory-b
ulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec7
5b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2
5884 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
5885 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
5886 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
5887 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
5888 x86_64/corenrn/mod2c/Ca.cpp:260:16: warning: equality comparison w
ith extraneous parentheses [-Wparentheses-equality]
5889 if ((v == -27.0)) {
...
6169 #pragma omp simd
6170 ^
6171 x86_64/corenrn/mod2c/SKv3_1.cpp:339:9: warning: loop not vectorize
d: the optimizer was unable to perform the requested transformatio
n; the transformation might be disabled or specified as part of an
unsupported transformation ordering [-Wpass-failed=transform-warn
ing]
6172 #pragma omp simd
6173 ^
6174 3 warnings generated.
>> 6175 x86_64/corenrn/mod2c/cacumm.cpp:38:10: fatal error: 'Eigen/Core' f
ile not found
6176 #include <Eigen/Core>
6177 ^~~~~~~~~~~~
6178 1 error generated.
>> 6179 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/cacumm.o] Error 1
6180 make[3]: *** Waiting for unfinished jobs....
6181 x86_64/corenrn/mod2c/TTXDynamicsSwitch.cpp:239:13: warning: loop n
ot vectorized: the optimizer was unable to perform the requested t
ransformation; the transformation might be disabled or specified a
s part of an unsupported transformation ordering [-Wpass-failed=tr
ansform-warning]
6182 #pragma omp simd
6183 ^
6184 x86_64/corenrn/mod2c/TTXDynamicsSwitch.cpp:271:9: warning: loop no
t vectorized: the optimizer was unable to perform the requested tr
ansformation; the transformation might be disabled or specified as
part of an unsupported transformation ordering [-Wpass-failed=tra
nsform-warning]
6185 #pragma omp simd
6186 ^
6187 2 warnings generated.
6188 x86_64/corenrn/mod2c/VecStim.cpp:373:13: warning: loop not vectori
zed: the optimizer was unable to perform the requested transformat
ion; the transformation might be disabled or specified as part of
an unsupported transformation ordering [-Wpass-failed=transform-wa
rning]
6189 #pragma omp simd
6190 ^
6191 1 warning generated.
>> 6192 x86_64/corenrn/mod2c/cacummb.cpp:38:10: fatal error: 'Eigen/Core'
file not found
6193 #include <Eigen/Core>
6194 ^~~~~~~~~~~~
6195 1 error generated.
>> 6196 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzom
zs/spack-build-mo7mnoo/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/cacummb.o] Error 1
6197 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo/test/nrnivmodl/3a24bd33c51ee3
0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a'
>> 6198 make[2]: *** [test/external/channel-benchmark/CMakeFiles/NRN_TEST_
nrnivmodl_3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47c3
be88641a.dir/build.make:135: test/nrnivmodl/3a24bd33c51ee30c68f71d
610b146a37c165552933d5963dc6fd47c3be88641a/x86_64/special] Error 2
6199 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo'
>> 6200 make[1]: *** [CMakeFiles/Makefile2:9667: test/external/channel-ben
chmark/CMakeFiles/NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b146
a37c165552933d5963dc6fd47c3be88641a.dir/all] Error 2
6201 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42
sq6duhuwlyvzomzs/spack-build-mo7mnoo'
>> 6202 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336162/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-mo7mnoouu7j2nf42sq6duhuwlyvzomzs/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i7n31: task 0: Exited with exit code 1
section_end:1719928833:step_script section_start:1719928833:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=301444 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1336162 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=301485 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1336162 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=301526 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1336162 responseStatus=201 Created token=glcbt-64
section_end:1719928835:upload_artifacts_on_failure section_start:1719928835:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1719928836:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-nvhpc-acc-legacy.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1719927906:resolve_secrets Resolving secrets
section_end:1719927906:resolve_secrets section_start:1719927906:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1165609571, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 219873, build ref , job ID 1336163
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1336163_PROD_P2160_CP2_C8
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2283874
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1336163_PROD_P2160_CP2_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873 --ntasks=2 --jobid=2283874 --cpus-per-task=8 --mem=160G
section_end:1719927908:prepare_executor section_start:1719927908:prepare_script Preparing environment
Using git from spack modules
Running on r1i7n31 via bbpv1.epfl.ch...
section_end:1719927912:prepare_script section_start:1719927912:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1719927913:get_sources section_start:1719927913:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=278097 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1719927918:restore_cache section_start:1719927918:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1336160)...
Runtime platform  arch=amd64 os=linux pid=278217 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1336160 responseStatus=200 OK token=glcbt-64
section_end:1719927919:download_artifacts section_start:1719927919:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873/J1336163_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/pybnafj2h7zocbdq6dbaptu3rdx5fmtq
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2283874/ccache
Config file: /nvme/bbpcihpcproj12/2283874/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Tue Jul 2 15:45:24 2024
Local storage:
Cache size (GB): 0.45 / 0.51 (86.96%)
Files: 8848
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/pybnafj2h7zocbdq6dbaptu3rdx5fmtq
Concretized
--------------------------------
- xk3rksr neuron@git.e073aa9242973a8e569db9979da021052107a808=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] pybnafj ^nmodl@git.066bd57e519c25975f7a57ac8961fb297160c16f=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a57ac8961fb297160c16f_develop-pybnaf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
==> Installing neuron-git.e073aa9242973a8e569db9979da021052107a808=develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi [50/50]
==> No binary for neuron-git.e073aa9242973a8e569db9979da021052107a808=develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
28 errors found in build log:
3065 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/hocmark.cpp.o
3066 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336158/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8
e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje6
4yyvkdzmwi/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr5
4mxbhe64tfaje64yyvkdzmwi/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spa
ck-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_devel
op-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build
-xk3rksr -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/
spack-build-xk3rksr/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54
mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-
build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a
808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdz
mwi/spack-build-xk3rksr/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuro
n-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mx
bhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack
-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107
a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdz
mwi/spack-build-xk3rksr/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spac
k-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develo
p-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa
9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64
yyvkdzmwi/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54
mxbhe64tfaje64yyvkdzmwi/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219
873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e56
9db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073
aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje
64yyvkdzmwi/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/
spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210
52107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvk
dzmwi/spack-build-xk3rksr/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
ake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-st
age-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk
3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/ivos -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-buil
d/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_
develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/nrnpython/.
. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J
1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db99
79da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-s
rc/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e0
73aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfa
je64yyvkdzmwi/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/nrnpython/../i
voc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack
-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe
64tfaje64yyvkdzmwi/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-b
uild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a8
08_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/nrnpytho
n/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python
3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzm
wi/spack-src/external/eigen -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_
map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-n
euron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr
54mxbhe64tfaje64yyvkdzmwi/spack-src/external/nanobind/include -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp.o -M
F CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp.o.d -o CMakeFiles/n
rniv_lib.dir/__/ivoc/hocmark.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rks
r54mxbhe64tfaje64yyvkdzmwi/spack-src/src/ivoc/hocmark.cpp
3067 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron
-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxb
he64tfaje64yyvkdzmwi/spack-build-xk3rksr/bin', compiling default o
nes only!
3068 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvk
dzmwi/spack-build-xk3rksr MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software
/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a57ac8961
fb297160c16f_develop-pybnaf/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
3069 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/bin'
3070 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3071 make[3]: xcrun: No such file or directory
3072 Default NMODL flags:
>> 3073 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3074 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3075 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3076 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3077 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
3078 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/htlist.cpp.o
3079 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336158/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8
e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje6
4yyvkdzmwi/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr5
4mxbhe64tfaje64yyvkdzmwi/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spa
ck-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_devel
op-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build
-xk3rksr -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/
spack-build-xk3rksr/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54
mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-
build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a
808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdz
mwi/spack-build-xk3rksr/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuro
n-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mx
bhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack
-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107
a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdz
mwi/spack-build-xk3rksr/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spac
k-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develo
p-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa
9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64
yyvkdzmwi/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54
mxbhe64tfaje64yyvkdzmwi/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219
873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e56
9db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073
aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje
64yyvkdzmwi/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/
spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210
52107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvk
dzmwi/spack-build-xk3rksr/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
ake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-st
age-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk
3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/ivos -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-buil
d/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_
develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/nrnpython/.
. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J
1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db99
79da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-s
rc/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e0
73aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfa
je64yyvkdzmwi/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/nrnpython/../i
voc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack
-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe
64tfaje64yyvkdzmwi/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-b
uild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a8
08_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/src/nrnpytho
n/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python
3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzm
wi/spack-src/external/eigen -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_
map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-n
euron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr
54mxbhe64tfaje64yyvkdzmwi/spack-src/external/nanobind/include -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o -MF
CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o.d -o CMakeFiles/nrn
iv_lib.dir/__/ivoc/htlist.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54
mxbhe64tfaje64yyvkdzmwi/spack-src/src/ivoc/htlist.cpp
...
3860 "./name_clashes.mod" => LINKING shared library "/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrn
ivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e
1b453/x86_64/./libnrnmech.so"
3861 "./unitstest.mod" "./version_macros.mod"
3862
3863 Creating 'x86_64' directory for .o files.
3864
3865 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver
sion_macros.o
>> 3866 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s
ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu
ptools.installer and fetch_build_eggs are deprecated.
3867 !!
3868
3869 **********************************************************
**********************
3870 Requirements should be satisfied by a PEP 517 installer.
3871 If you are using pip, you can try `pip install --use-pep51
7`.
3872 **********************************************************
**********************
...
3877 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaj
e64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/8b70050800897334ac
3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/x86_64/./special" L
DFLAGS are:
3878 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaj
e64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/fb5fb42ddab2ff650e
8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/x86_64/./special" L
DFLAGS are:
3879 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaj
e64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/7378b0d1010df9fb9d
314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/x86_64/./special" L
DFLAGS are:
3880 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvk
dzmwi/spack-build-xk3rksr MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
3881 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/c448d279dd3b9
1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
3882 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3883 make[3]: xcrun: No such file or directory
3884 Default NMODL flags:
>> 3885 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3886 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr'
3887 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3888 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3889 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3890 [ 42%] Built target nrn-benchmarks
3891 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
...
4580 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvk
dzmwi/spack-build-xk3rksr MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4581 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
4582 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/external/tests/red
uced_dentate//mechanisms/Aradi_KDRf.mod /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stag
e-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3r
ksr54mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/53
c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Ara
di_KDRf.mod
4583 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
4584 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4585 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzm
wi/spack-build-xk3rksr/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/trivial.cpp
>> 4586 make[3]: xcrun: No such file or directory
4587 Default NMODL flags:
4588 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr'
>> 4589 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4590 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4591 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzm
wi/spack-build-xk3rksr/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/tstdarray.cpp
4592 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4593 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzm
wi/spack-build-xk3rksr/test/nrnivmodl/263a5c542e063ee6760ce51af8be
262e1c89db6e16b2211fb308c533e45334f2/x86_64/tstextrn.cpp
4594 [ 45%] Built target vclamp_cpp
4595 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod
...
4639 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/external/tests/red
uced_dentate//mechanisms/LcaMig.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr5
4mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.
mod
4640 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvk
dzmwi/spack-build-xk3rksr MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4641 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
4642 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4643 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
4644 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/external/tests/red
uced_dentate//mechanisms/SH_KIn.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr5
4mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.
mod
>> 4645 make[3]: xcrun: No such file or directory
4646 Default NMODL flags:
>> 4647 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4648 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4649 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4650 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4651 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/SH_na8st.mod
4652 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/external/tests/red
uced_dentate//mechanisms/SH_na8st.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rks
r54mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na
8st.mod
4653 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
...
4814 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr'
4815 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvk
dzmwi/spack-build-xk3rksr INCFLAGS=-I/usr/include LINKFLAGS=/usr/l
ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC
NRN_PRCELLSTATE=0
4816 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/new_calcium_channels.mod
4817 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/new_calcium_channel
s.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack
-build-xk3rksr/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165
552933d5963dc6fd47c3be88641a/new_calcium_channels.mod
4818 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/f7f437ac4f0ea
140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c'
4819 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4820 make[3]: xcrun: No such file or directory
4821 Default NMODL flags:
>> 4822 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4823 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/Ca.mod
4824 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/Ca.mod /gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-bu
ild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a80
8_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr/tes
t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47
c3be88641a/Ca.mod
4825 [NMODL] [warning] :: Can not inline function call to specify_invl
4826 [NMODL] [warning] :: Can not inline function call to specify_invl
4827 [NMODL] [warning] :: Can not inline function call to specify_invl
4828 [NMODL] [warning] :: Can not inline function call to specify_invl
...
4832 [NMODL] [warning] :: Can not inline function call to specify_invl
4833 [NMODL] [warning] :: Can not inline function call to specify_invl
4834 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvk
dzmwi/spack-build-xk3rksr MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4835 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
4836 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/b62f97c7d3f6d
905c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
4837 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4838 make[3]: xcrun: No such file or directory
4839 Default NMODL flags:
4840 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/CaDynamics_DC0.mod
4841 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/CaDynamics_DC0.mod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build
-xk3rksr/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933
d5963dc6fd47c3be88641a/CaDynamics_DC0.mod
>> 4842 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4843 [NMODL] [warning] :: Can not inline function call to mynormrand
4844 [NMODL] [warning] :: Can not inline function call to mynormrand
4845 [NMODL] [warning] :: Can not inline function call to mynormrand
4846 [NMODL] [warning] :: Can not inline function call to mynormrand
4847 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/CaDynamics_E2.mod
4848 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/CaDynamics_E2.mod /
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
63/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build-
xk3rksr/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d
5963dc6fd47c3be88641a/CaDynamics_E2.mod
4849 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4850 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4851 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4852 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvk
dzmwi/spack-build-xk3rksr MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4853 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/53c432f7080fe
7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
4854 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4855 make[3]: xcrun: No such file or directory
4856 Default NMODL flags:
4857 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
4858 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/263a5c542e063e
e6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/./libnrn
mech.so"
>> 4859 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4860 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/Ca_HVA.mod
4861 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/Ca_HVA.mod /gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rksr
/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6
fd47c3be88641a/Ca_HVA.mod
4862 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4863 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4864 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4865 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
...
5049 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build
-xk3rksr/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933
d5963dc6fd47c3be88641a
5050 cfiles =
5051 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build
-xk3rksr/share/nrn/nrnmain.cpp:
5052 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvk
dzmwi/spack-build-xk3rksr MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5053 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/14c92ceb412f1
b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
5054 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5055 make[3]: xcrun: No such file or directory
5056 Default NMODL flags:
>> 5057 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5058 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5059 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5060 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5061 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5062 [NMODL] [warning] :: SYMTAB :: w [Argument] in NetReceiveBlock sha
dows <assigned_definition> definition in NMODL_GLOBAL
5063 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
...
5107 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
5108 Translating cabpump.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/share/nrn/demo/release/x86_6
4/cabpump.cpp
5109 Notice: Assignment to the GLOBAL variable, "vol", is not thread sa
fe
5110 Translating cachan1.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/share/nrn/demo/release/x86_6
4/cachan1.cpp
5111 Thread Safe
5112 -> NMODL ../capump.mod
>> 5113 make[3]: xcrun: No such file or directory
5114 Default NMODL flags:
5115 -> NMODL ../invlfire.mod
5116 -> NMODL ../khhchan.mod
5117 Translating camchan.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/share/nrn/demo/release/x86_6
4/camchan.cpp
5118 Thread Safe
5119 -> NMODL ../nacaex.mod
>> 5120 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5121 Translating capump.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/share/nrn/demo/release/x86_64
/capump.cpp
5122 Thread Safe
5123 Translating invlfire.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe
64tfaje64yyvkdzmwi/spack-build-xk3rksr/share/nrn/demo/release/x86_
64/invlfire.cpp
5124 Thread Safe
5125 -> NMODL ../nachan.mod
5126 -> NMODL ../release.mod
...
5180 -> NMODL .././halfgap.mod
5181 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaj
e64yyvkdzmwi/spack-build-xk3rksr/share/nrn/demo/release/x86_64/./s
pecial" LDFLAGS are:
5182 Translating halfgap.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/halfgap
.cpp
5183 Thread Safe
5184 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzm
wi/spack-build-xk3rksr/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067
cafa02da4514b4383a54de8ff121657615ff/x86_64/halfgap.cpp
5185 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/a9c54b18e4b543
51cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./libnrn
mech.so"
>> 5186 "x86_64/corenrn/mod2c/hhkin.cpp", line 40: catastrophic error: can
not open source file "Eigen/Core"
5187 #include <Eigen/Core>
5188 ^
5189
5190 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/hhkin.cpp".
5191 Compilation terminated.
>> 5192 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzm
wi/spack-build-xk3rksr/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/hhkin.o] Error 2
5193 make[3]: *** Waiting for unfinished jobs....
5194 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaj
e64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/a9c54b18e4b54351cb
4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./special" L
DFLAGS are:
5195 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build
-xk3rksr/share/nrn/nrnmain.cpp:
5196 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/share/nrn/demo/release/x86_64
'
5197 Successfully created x86_64/special
5198 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr'
...
5233 [ 49%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest
_coreneuron/test_fast_imem.py
5234 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaj
e64yyvkdzmwi/spack-src//test/pytest_coreneuron/test_fast_imem.py /
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
63/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build-
xk3rksr/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_core
neuron/test_fast_imem.py
5235 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build
-xk3rksr/share/coreneuron/coreneuron.cpp:
5236 [ 49%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest
_coreneuron/test_hoc_po.py
5237 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaj
e64yyvkdzmwi/spack-src//test/pytest_coreneuron/test_hoc_po.py /gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/
spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210
52107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build-xk3
rksr/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_coreneu
ron/test_hoc_po.py
5238 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/b62f97c7d3f6d9
05c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
>> 5239 make[2]: *** [test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivm
odl_b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee8
76.dir/build.make:95: test/nrnivmodl/b62f97c7d3f6d905c774d64e10128
b3300792f8f757b926b965c058a4d6ee876/x86_64/special] Error 2
5240 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr'
>> 5241 make[1]: *** [CMakeFiles/Makefile2:9572: test/external/testcorenrn
/CMakeFiles/NRN_TEST_nrnivmodl_b62f97c7d3f6d905c774d64e10128b33007
92f8f757b926b965c058a4d6ee876.dir/all] Error 2
5242 make[1]: *** Waiting for unfinished jobs....
5243 [ 50%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest
_coreneuron/test_imem.py
5244 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaj
e64yyvkdzmwi/spack-src//test/pytest_coreneuron/test_imem.py /gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build-xk3rk
sr/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_coreneuro
n/test_imem.py
5245 [ 50%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest
_coreneuron/test_inheritance.py
5246 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-bu
ild-xk3rksr/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaj
e64yyvkdzmwi/spack-src//test/pytest_coreneuron/test_inheritance.py
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J133
6163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979d
a021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-buil
d-xk3rksr/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_co
reneuron/test_inheritance.py
5247 [ 50%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest
_coreneuron/test_loadbal.py
...
5322 Remark: individual warnings can be suppressed with "--diag_suppres
s <warning-name>"
5323
5324 "x86_64/corenrn/mod2c/CoreConfig.cpp", line 231: warning: conversi
on from a string literal to "char *" is deprecated [deprecated_str
ing_conv]
5325 static char* REPORT_CONFIG_FILE = "report.conf";
5326 ^
5327
>> 5328 "x86_64/corenrn/mod2c/SH_na8st.cpp", line 40: catastrophic error:
cannot open source file "Eigen/Core"
5329 #include <Eigen/Core>
5330 ^
5331
5332 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/SH_na8st.cpp".
5333 Compilation terminated.
>> 5334 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzm
wi/spack-build-xk3rksr/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/SH_na8st.o] Error 2
5335 make[3]: *** Waiting for unfinished jobs....
5336 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283874/pgcudafat7yLdXp5MrV7W.o: missing .note.GNU-sta
ck section implies executable stack
5337 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5338 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/f7f437ac4f0ea1
40e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/x86_64'
5339 Successfully created x86_64/special
5340 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr'
5341 [ 50%] Built target NRN_TEST_nrnivmodl_f7f437ac4f0ea140e809f1bdd7f
7d03201e354b9a2041597f8faaf7fb7aebb7c
5342 => Binary creating x86_64/special-core
5343 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build
-xk3rksr/share/coreneuron/coreneuron.cpp:
5344 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/53c432f7080fe7
b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
>> 5345 make[2]: *** [test/external/reduced_dentate/CMakeFiles/NRN_TEST_nr
nivmodl_53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5
edfead.dir/build.make:117: test/nrnivmodl/53c432f7080fe7b786e16536
f2d17f96d387425d200c645a6b4cec93b5edfead/x86_64/special] Error 2
5346 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr'
>> 5347 make[1]: *** [CMakeFiles/Makefile2:8970: test/external/reduced_den
tate/CMakeFiles/NRN_TEST_nrnivmodl_53c432f7080fe7b786e16536f2d17f9
6d387425d200c645a6b4cec93b5edfead.dir/all] Error 2
5348 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283874/pgcudafateL0dmXO4Mt68.o: missing .note.GNU-sta
ck section implies executable stack
5349 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5350 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/c35d2f235e0f38
60fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
5351 [INFO] MOD files built successfully for CoreNEURON
5352 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe6
4tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64'
5353 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
...
5756 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5757 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr/test/nrnivmodl/3a24bd33c51ee3
0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64'
5758 Successfully created x86_64/special
5759 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr'
5760 [ 50%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1
46a37c165552933d5963dc6fd47c3be88641a
5761 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64
tfaje64yyvkdzmwi/spack-build-xk3rksr'
>> 5762 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336163/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-xk3rksr54mxbhe64tfaje64yyvkdzmwi/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i7n31: task 0: Exited with exit code 1
section_end:1719929383:step_script section_start:1719929383:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=20020 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1336163 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=20063 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1336163 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=20104 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1336163 responseStatus=201 Created token=glcbt-64
section_end:1719929385:upload_artifacts_on_failure section_start:1719929385:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1719929385:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-nvhpc-acc-shared.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1719927906:resolve_secrets Resolving secrets
section_end:1719927906:resolve_secrets section_start:1719927906:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1066458271, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 219873, build ref , job ID 1336164
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1336164_PROD_P2160_CP3_C9
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2283875
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1336164_PROD_P2160_CP3_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873 --ntasks=2 --jobid=2283875 --cpus-per-task=8 --mem=160G
section_end:1719927909:prepare_executor section_start:1719927909:prepare_script Preparing environment
Using git from spack modules
Running on r1i5n18 via bbpv1.epfl.ch...
section_end:1719927912:prepare_script section_start:1719927912:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1719927912:get_sources section_start:1719927912:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=293119 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1719927918:restore_cache section_start:1719927918:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1336160)...
Runtime platform  arch=amd64 os=linux pid=293225 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1336160 responseStatus=200 OK token=glcbt-64
section_end:1719927919:download_artifacts section_start:1719927919:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873/J1336164_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/pybnafj2h7zocbdq6dbaptu3rdx5fmtq
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2283875/ccache
Config file: /nvme/bbpcihpcproj12/2283875/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Tue Jul 2 15:45:24 2024
Local storage:
Cache size (GB): 0.45 / 0.51 (87.73%)
Files: 8791
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/pybnafj2h7zocbdq6dbaptu3rdx5fmtq
Concretized
--------------------------------
- plrm5ht neuron@git.e073aa9242973a8e569db9979da021052107a808=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] pybnafj ^nmodl@git.066bd57e519c25975f7a57ac8961fb297160c16f=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g [40/50]
==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g
Stage: 2.64s. Cmake: 4.18s. Build: 1.27s. Install: 0.10s. Post-install: 0.37s. Total: 8.76s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a57ac8961fb297160c16f_develop-pybnaf
==> Installing neuron-git.e073aa9242973a8e569db9979da021052107a808=develop-plrm5htwgdejgmaaldnicwpv5yja5wjt [50/50]
==> No binary for neuron-git.e073aa9242973a8e569db9979da021052107a808=develop-plrm5htwgdejgmaaldnicwpv5yja5wjt found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
42 errors found in build log:
3067 make -f src/coreneuron/CMakeFiles/coreneuron-for-tests.dir/build.
make src/coreneuron/CMakeFiles/coreneuron-for-tests.dir/build
3068 [ 27%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/idraw.cpp.o
3069 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336158/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a8
e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicw
pv5yja5wjt/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htw
gdejgmaaldnicwpv5yja5wjt/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spa
ck-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_devel
op-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build
-plrm5ht -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/
spack-build-plrm5ht/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwg
dejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-
build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a
808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5
wjt/spack-build-plrm5ht/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuro
n-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgde
jgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack
-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107
a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5
wjt/spack-build-plrm5ht/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spac
k-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develo
p-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa
9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwp
v5yja5wjt/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwg
dejgmaaldnicwpv5yja5wjt/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219
873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e56
9db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073
aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnic
wpv5yja5wjt/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/
spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210
52107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yj
a5wjt/spack-build-plrm5ht/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
ake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-st
age-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-pl
rm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/ivos -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-buil
d/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_
develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrnpython/.
. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J
1336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db99
79da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-s
rc/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e0
73aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldn
icwpv5yja5wjt/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrnpython/../i
voc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack
-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgm
aaldnicwpv5yja5wjt/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-b
uild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a8
08_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrnpytho
n/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python
3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-src/external/eigen -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_
map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-n
euron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5ht
wgdejgmaaldnicwpv5yja5wjt/spack-src/external/nanobind/include -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/idraw.cpp.o -MF
CMakeFiles/nrniv_lib.dir/__/ivoc/idraw.cpp.o.d -o CMakeFiles/nrniv
_lib.dir/__/ivoc/idraw.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron
-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdej
gmaaldnicwpv5yja5wjt/spack-src/src/ivoc/idraw.cpp
3070 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht'
3071 make[2]: Nothing to be done for 'src/coreneuron/CMakeFiles/coreneu
ron-for-tests.dir/build'.
3072 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht'
>> 3073 make[3]: xcrun: No such file or directory
3074 Default NMODL flags:
>> 3075 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3076 [ 27%] Built target coreneuron-for-tests
3077 [ 27%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ivoc.cpp.o
3078 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336158/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a8
e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicw
pv5yja5wjt/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htw
gdejgmaaldnicwpv5yja5wjt/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spa
ck-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_devel
op-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build
-plrm5ht -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/
spack-build-plrm5ht/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwg
dejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-
build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a
808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5
wjt/spack-build-plrm5ht/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuro
n-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgde
jgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack
-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107
a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5
wjt/spack-build-plrm5ht/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spac
k-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develo
p-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa
9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwp
v5yja5wjt/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwg
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/python build_ext --define=USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_B
UILD=0
3864 INFO:root:Extension common compile flags defaultdict(<class 'list'
>, {'library_dirs': ['/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicw
pv5yja5wjt/spack-build-plrm5ht/lib'], 'libraries': ['nrniv'], 'lan
guage': 'c++'})
3865 INFO:root:RX3D is DISABLED
3866 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver
sion_macros.o
>> 3867 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s
ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu
ptools.installer and fetch_build_eggs are deprecated.
3868 !!
3869
3870 **********************************************************
**********************
3871 Requirements should be satisfied by a PEP 517 installer.
3872 If you are using pip, you can try `pip install --use-pep51
7`.
3873 **********************************************************
**********************
...
3876 dist.fetch_build_eggs(dist.setup_requires)
3877 WARNING:root:WARNING: The wheel package is not available.
3878 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yj
a5wjt/spack-build-plrm5ht MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
3879 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/c448d279dd3b9
1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
3880 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
3881 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht'
>> 3882 make[3]: xcrun: No such file or directory
3883 Default NMODL flags:
>> 3884 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3885 [ 38%] Built target nrn-benchmarks
3886 [ 38%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
ts/iovec.cpp.o
3887 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P219873/J1336158/spack/lib/spack/env/nvhpc/nvc++ -DCORENRN_
BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-
build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a
808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/ivoc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/s
rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e0
73aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldn
icwpv5yja5wjt/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htw
gdejgmaaldnicwpv5yja5wjt/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-b
uild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a8
08_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/sr
c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wj
t/spack-build-plrm5ht/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neur
on-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgd
ejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/src/nrnpython -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spa
ck-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210521
07a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5h
t/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/
spack-build-plrm5ht/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwg
dejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/src/sundials -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spa
ck-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210521
07a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5h
t/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldni
cwpv5yja5wjt/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5h
twgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.c
h/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/
spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_de
velop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrnpython -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
64/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/sr
c/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wj
t/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.
e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaal
dnicwpv5yja5wjt/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage
-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5
htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/sparse13 -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-bui
ld/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808
_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/sundials -
I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J133
6164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979d
a021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/
src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicw
pv5yja5wjt/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stag
e-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm
5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/sundials/shared -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/extern
al/catch2/src/catch2/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e
073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaald
nicwpv5yja5wjt/spack-build-plrm5ht/external/catch2/generated-inclu
des -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack
-build-plrm5ht/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi
-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-
git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejg
maaldnicwpv5yja5wjt/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-sta
ge-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-plr
m5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrnpython/.. -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spa
ck-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210521
07a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrnp
ython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5h
twgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrnpython/../ivoc -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/s
pack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105
2107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/nr
npython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa92
42973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5
yja5wjt/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/src/nrnpython/../ivos -
I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install
_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python3.11 -isyst
em /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-sr
c/external/eigen -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e
073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaald
nicwpv5yja5wjt/spack-src/external/nanobind/include -tp haswell -g
-O1 -fno-omit-frame-pointer --c++17 --diag_suppress=1,47,111,128,
170,174,177,186,541,550,816,2465 -noswitcherror -MD -MT test/CMake
Files/testneuron.dir/unit_tests/iovec.cpp.o -MF CMakeFiles/testneu
ron.dir/unit_tests/iovec.cpp.o.d -o CMakeFiles/testneuron.dir/unit
_tests/iovec.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicw
pv5yja5wjt/spack-src/test/unit_tests/iovec.cpp
3888 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3889 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3890 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
...
4581 [ 41%] Linking CXX executable ../../bin/test/sections_c
4582 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/api && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin
/cmake -E cmake_link_script CMakeFiles/sections_c.dir/link.txt --v
erbose=1
4583 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yj
a5wjt/spack-build-plrm5ht MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
4584 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
4585 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4586 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
158/spack/lib/spack/env/nvhpc/nvc++ -tp haswell -g -O1 -fno-omit-f
rame-pointer -noswitcherror -rdynamic CMakeFiles/sections_c.dir/s
ections.c.o -o ../../bin/test/sections_c -L/gpfs/bbp.cscs.ch/ssd
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e-mpi-2.27.p1.hmpt-6rr256/lib -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-st
age-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-pl
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scs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-
skylake/python-3.11.6-bj4i6m/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.
2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_appli
cations/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib:/gpfs/bb
p.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3
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h/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyla
ke/python-3.11.6-bj4i6m/lib/libpython3.11.so ../../lib/libnanobind
.a /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/in
stall_gcc-12.3.0-skylake/readline-8.2-pdugg7/lib/libreadline.so /g
pfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install
_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libcurses.so /gpfs/bbp.
cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.
3.0-skylake/ncurses-6.4-6kdbhv/lib/libform.so -lpthread -lmpi -ldl
-lnvcpumath
>> 4587 make[3]: xcrun: No such file or directory
4588 Default NMODL flags:
>> 4589 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4590 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4591 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht'
4592 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4593 INFO:root:running build_scripts
4594 INFO:root:creating build
4595 INFO:root:creating build/scripts-3.11
...
4718 -> NMODL .././halfgap.mod
4719 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yj
a5wjt/spack-build-plrm5ht MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
4720 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
4721 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4722 [ 44%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
4723 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/red
uced_dentate//mechanisms/DGC_UK.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htw
gdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.
mod
>> 4724 make[3]: xcrun: No such file or directory
4725 Default NMODL flags:
4726 [ 44%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33
00792f8f757b926b965c058a4d6ee876/Gfluct3.mod
4727 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-
3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/testcor
enrn//mod/Gfluct3.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicw
pv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/b62f97c7d3f6d905c774
d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
>> 4728 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4729 Translating halfgap.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/bbd7c82eee28b
931214a8172bb776ba66c406a6620c807381c850fedcdd74295/x86_64/halfgap
.cpp
4730 Thread Safe
4731 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/test/nrnivmodl/bbd7c82eee28b931214a8172bb77
6ba66c406a6620c807381c850fedcdd74295/x86_64/halfgap.cpp
4732 [ 44%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
4733 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/red
uced_dentate//mechanisms/DGC_sAHP.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5h
twgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_s
AHP.mod
4734 [ 44%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33
00792f8f757b926b965c058a4d6ee876/hhderiv.mod
...
4785 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/red
uced_dentate//mechanisms/ichan2.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htw
gdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.
mod
4786 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yj
a5wjt/spack-build-plrm5ht MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
4787 [ 44%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
4788 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/red
uced_dentate//mechanisms/iconc_Ca.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5h
twgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc
_Ca.mod
4789 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/b62f97c7d3f6d
905c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
4790 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4791 make[3]: xcrun: No such file or directory
4792 Default NMODL flags:
4793 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/263a5c542e063e
e6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/./libnrn
mech.so"
>> 4794 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4795 [NMODL] [warning] :: Can not inline function call to mynormrand
4796 [NMODL] [warning] :: Can not inline function call to mynormrand
4797 [NMODL] [warning] :: Can not inline function call to mynormrand
4798 [NMODL] [warning] :: Can not inline function call to mynormrand
4799 [ 44%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/kcaPR.mod
4800 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/red
uced_dentate//mechanisms/kcaPR.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwg
dejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/53c432f
7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mo
d
...
4854 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/tqperf && /gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.
7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stag
e-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm
5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/tqperf//mod/
invlfire.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wj
t/spack-build-plrm5ht/test/nrnivmodl/f7f437ac4f0ea140e809f1bdd7f7d
03201e354b9a2041597f8faaf7fb7aebb7c/invlfire.mod
4855 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yj
a5wjt/spack-build-plrm5ht MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
4856 [ 45%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/Ca.mod
4857 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/Ca.mod /gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-bu
ild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a80
8_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/tes
t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47
c3be88641a/Ca.mod
4858 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/53c432f7080fe
7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
4859 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4860 make[3]: xcrun: No such file or directory
4861 Default NMODL flags:
4862 [ 45%] Generating ../../nrnivmodl/f7f437ac4f0ea140e809f1bdd7f7d032
01e354b9a2041597f8faaf7fb7aebb7c/invlfiresha.mod
4863 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/tqperf && /gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.
7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stag
e-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm
5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/tqperf//modx
/invlfiresha.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yj
a5wjt/spack-build-plrm5ht/test/nrnivmodl/f7f437ac4f0ea140e809f1bdd
7f7d03201e354b9a2041597f8faaf7fb7aebb7c/invlfiresha.mod
>> 4864 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4865 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4866 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4867 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4868 [ 45%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/CaDynamics_DC0.mod
4869 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/CaDynamics_DC0.mod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build
-plrm5ht/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933
d5963dc6fd47c3be88641a/CaDynamics_DC0.mod
4870 [ 45%] Building special[-core] for test group tqperf
...
4891 => Binary creating x86_64/special-core
4892 [ 45%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/Ih.mod
4893 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/Ih.mod /gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-bu
ild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a80
8_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/tes
t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47
c3be88641a/Ih.mod
4894 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yj
a5wjt/spack-build-plrm5ht INCFLAGS=-I/usr/include LINKFLAGS=/usr/l
ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=SHARED
NRN_PRCELLSTATE=0
4895 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/f7f437ac4f0ea
140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c'
4896 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4897 make[3]: xcrun: No such file or directory
4898 Default NMODL flags:
4899 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build
-plrm5ht/share/coreneuron/coreneuron.cpp:
>> 4900 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4901 [ 45%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/Im.mod
4902 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/Im.mod /gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-bu
ild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a80
8_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/tes
t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47
c3be88641a/Im.mod
4903 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283875/pgcudafatw_XcnfdeNVz.o: missing .note.GNU-stac
k section implies executable stack
4904 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
4905 [NMODL] [warning] :: Can not inline function call to specify_invl
4906 [NMODL] [warning] :: Can not inline function call to specify_invl
...
5057 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kd.mod /gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-bu
ild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a80
8_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/tes
t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47
c3be88641a/kd.mod
5058 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/kd2.mod
5059 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kd2.mod /gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-b
uild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a8
08_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/te
st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4
7c3be88641a/kd2.mod
5060 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yj
a5wjt/spack-build-plrm5ht MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
5061 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/14c92ceb412f1
b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
5062 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5063 make[3]: xcrun: No such file or directory
5064 Default NMODL flags:
5065 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/kdb.mod
5066 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kdb.mod /gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-b
uild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a8
08_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5ht/te
st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4
7c3be88641a/kdb.mod
>> 5067 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5068 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5069 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5070 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5071 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/kdrbca1.mod
5072 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-bu
ild-plrm5ht/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/kdrbca1.mod /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spa
ck-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210521
07a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-plrm5h
t/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc
6fd47c3be88641a/kdrbca1.mod
5073 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
...
5129 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build
-plrm5ht/share/nrn/demo/release
5130 cfiles =
5131 Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod"
"invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mo
d"
5132
5133 Creating 'x86_64' directory for .o files.
5134
>> 5135 "x86_64/corenrn/mod2c/hhderiv.cpp", line 40: catastrophic error: c
annot open source file "Eigen/Core"
5136 #include <Eigen/Core>
5137 ^
5138
5139 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/hhderiv.cpp".
5140 Compilation terminated.
>> 5141 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/hhderiv.o] Error 2
5142 make[3]: *** Waiting for unfinished jobs....
5143 MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire
.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
5144 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht/share/nrn/demo/release/x86_6
4'
5145 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
5146 -> Compiling mod_func.cpp
5147 -> NMODL ../cabpump.mod
...
5166 Thread Safe
5167 Translating nacaex.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/share/nrn/demo/release/x86_64
/nacaex.cpp
5168 Thread Safe
5169 -> NMODL ../release.mod
5170 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/nrn/demo/release/x86_64/cabpump.cpp
5171 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/nrn/demo/release/x86_64/cachan1.cpp
>> 5172 "x86_64/corenrn/mod2c/hhkin.cpp", line 40: catastrophic error: can
not open source file "Eigen/Core"
5173 #include <Eigen/Core>
5174 ^
5175
5176 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/hhkin.cpp".
5177 Compilation terminated.
5178 Translating nachan.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/share/nrn/demo/release/x86_64
/nachan.cpp
5179 Thread Safe
>> 5180 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/hhkin.o] Error 2
5181 Translating release.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht/share/nrn/demo/release/x86_6
4/release.cpp
5182 Thread Safe
5183 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/nrn/demo/release/x86_64/camchan.cpp
5184 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/nrn/demo/release/x86_64/capump.cpp
5185 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/nrn/demo/release/x86_64/invlfire.cpp
5186 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/nrn/demo/release/x86_64/khhchan.cpp
...
5192 => Binary creating x86_64/special-core
5193 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/share/nrn/demo/release/x86_64
/./libnrnmech.so"
5194 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build
-plrm5ht/share/coreneuron/coreneuron.cpp:
5195 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yj
a5wjt/spack-build-plrm5ht MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=SHARED NRN_PRCELLSTATE=0
5196 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/3a24bd33c51ee
30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a'
5197 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5198 make[3]: xcrun: No such file or directory
5199 Default NMODL flags:
>> 5200 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5201 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283875/pgcudafatolpbQwlV8dc4.o: missing .note.GNU-sta
ck section implies executable stack
5202 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5203 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldni
cwpv5yja5wjt/spack-build-plrm5ht/share/nrn/demo/release/x86_64/./s
pecial" LDFLAGS are:
5204 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/b62f97c7d3f6d9
05c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
>> 5205 make[2]: *** [test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivm
odl_b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee8
76.dir/build.make:95: test/nrnivmodl/b62f97c7d3f6d905c774d64e10128
b3300792f8f757b926b965c058a4d6ee876/x86_64/special] Error 2
5206 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht'
>> 5207 make[1]: *** [CMakeFiles/Makefile2:9714: test/external/testcorenrn
/CMakeFiles/NRN_TEST_nrnivmodl_b62f97c7d3f6d905c774d64e10128b33007
92f8f757b926b965c058a4d6ee876.dir/all] Error 2
5208 make[1]: *** Waiting for unfinished jobs....
5209 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283875/pgcudafatNQqb1STxDgzu.o: missing .note.GNU-sta
ck section implies executable stack
5210 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5211 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/a9c54b18e4b543
51cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
5212 [INFO] MOD files built successfully for CoreNEURON
5213 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgma
aldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64'
...
5218 Thread Safe
5219 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067
cafa02da4514b4383a54de8ff121657615ff/x86_64/halfgap.cpp
5220 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/a9c54b18e4b543
51cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./libnrn
mech.so"
5221 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5222 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5223 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
>> 5224 "x86_64/corenrn/mod2c/Aradi_Ca.cpp", line 40: catastrophic error:
cannot open source file "Eigen/Core"
5225 #include <Eigen/Core>
5226 ^
5227
5228 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/Aradi_Ca.cpp".
5229 Compilation terminated.
>> 5230 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/Aradi_Ca.o] Error 2
5231 make[3]: *** Waiting for unfinished jobs....
5232 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283875/pgcudafat79sbX4tfrQlC.o: missing .note.GNU-sta
ck section implies executable stack
5233 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5234 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldni
cwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/a9c54b18e4b54351cb
4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./special" L
DFLAGS are:
>> 5235 "x86_64/corenrn/mod2c/Aradi_CadepK.cpp", line 40: catastrophic err
or: cannot open source file "Eigen/Core"
5236 #include <Eigen/Core>
5237 ^
5238
5239 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/Aradi_CadepK.cpp".
5240 Compilation terminated.
>> 5241 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/Aradi_CadepK.o] Error 2
5242 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build
-plrm5ht/share/nrn/nrnmain.cpp:
5243 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5244 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5245 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5246 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283875/pgcudafatxGtbfCp2nu_J.o: missing .note.GNU-sta
ck section implies executable stack
5247 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
...
5262 [NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <param
eter read_ion> definition in NMODL_GLOBAL
5263 [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <
parameter extern_neuron_var> definition in NMODL_GLOBAL
5264 [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <
parameter extern_neuron_var> definition in NMODL_GLOBAL
5265 [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <
parameter extern_neuron_var> definition in NMODL_GLOBAL
5266 [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <
parameter extern_neuron_var> definition in NMODL_GLOBAL
5267 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/53c432f7080fe7
b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
>> 5268 make[2]: *** [test/external/reduced_dentate/CMakeFiles/NRN_TEST_nr
nivmodl_53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5
edfead.dir/build.make:117: test/nrnivmodl/53c432f7080fe7b786e16536
f2d17f96d387425d200c645a6b4cec93b5edfead/x86_64/special] Error 2
5269 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht'
>> 5270 make[1]: *** [CMakeFiles/Makefile2:9008: test/external/reduced_den
tate/CMakeFiles/NRN_TEST_nrnivmodl_53c432f7080fe7b786e16536f2d17f9
6d387425d200c645a6b4cec93b5edfead.dir/all] Error 2
5271 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283875/pgcudafatTSvbhVzgxn9e.o: missing .note.GNU-sta
ck section implies executable stack
5272 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5273 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/a9c54b18e4b543
51cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64'
5274 Successfully created x86_64/special
5275 [NMODL] [warning] :: SYMTAB :: cai [Argument] in evaluate_fct shad
ows <parameter read_ion> definition in NMODL_GLOBAL
5276 [NMODL] [warning] :: SYMTAB :: cai [Argument] in evaluate_fct shad
ows <parameter read_ion> definition in NMODL_GLOBAL
...
5400 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8
c2b6901bba2525195c69836276a4b5d88ca7/x86_64/red.cpp
5401 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8
c2b6901bba2525195c69836276a4b5d88ca7/x86_64/sample.cpp
5402 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8
c2b6901bba2525195c69836276a4b5d88ca7/x86_64/unitstest.cpp
5403 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8
c2b6901bba2525195c69836276a4b5d88ca7/x86_64/version_macros.cpp
5404 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8
c2b6901bba2525195c69836276a4b5d88ca7/x86_64/watchrange.cpp
5405 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8
c2b6901bba2525195c69836276a4b5d88ca7/x86_64/watchrange2.cpp
>> 5406 "x86_64/corenrn/mod2c/orn.cpp", line 40: catastrophic error: canno
t open source file "Eigen/Core"
5407 #include <Eigen/Core>
5408 ^
5409
5410 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/orn.cpp".
5411 Compilation terminated.
>> 5412 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/orn.o] Error 2
5413 make[3]: *** Waiting for unfinished jobs....
5414 "x86_64/corenrn/mod2c/CoreConfig.cpp", line 230: warning: conversi
on from a string literal to "char *" is deprecated [deprecated_str
ing_conv]
5415 static char* SIM_CONFIG_FILE = "sim.conf";
5416 ^
5417
5418 Remark: individual warnings can be suppressed with "--diag_suppres
s <warning-name>"
5419
5420 "x86_64/corenrn/mod2c/CoreConfig.cpp", line 231: warning: conversi
on from a string literal to "char *" is deprecated [deprecated_str
ing_conv]
5421 static char* REPORT_CONFIG_FILE = "report.conf";
5422 ^
5423
5424 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/14c92ceb412f1b
4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
>> 5425 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_
nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068
9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd
a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2
5426 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht'
>> 5427 make[1]: *** [CMakeFiles/Makefile2:12008: test/external/olfactory-
bulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec
75b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2
5428 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/c35d2f235e0f38
60fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64/./libnrn
mech.so"
5429 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283875/pgcudafatnlKbNDfD3yaX.o: missing .note.GNU-sta
ck section implies executable stack
5430 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5431 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldni
cwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/c35d2f235e0f3860fb
ecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64/./special" L
DFLAGS are:
5432 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build
-plrm5ht/share/nrn/nrnmain.cpp:
5433 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283875/pgcudafatQ4Lb_KUH4UR0.o: missing .note.GNU-sta
ck section implies executable stack
5434 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5435 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/c35d2f235e0f38
60fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64'
5436 Successfully created x86_64/special
5437 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht'
5438 [ 47%] Built target NRN_TEST_nrnivmodl_c35d2f235e0f3860fbecadf05ec
8c2b6901bba2525195c69836276a4b5d88ca7
>> 5439 "x86_64/corenrn/mod2c/cacumm.cpp", line 40: catastrophic error: ca
nnot open source file "Eigen/Core"
5440 #include <Eigen/Core>
5441 ^
5442
5443 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/cacumm.cpp".
5444 Compilation terminated.
>> 5445 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/cacumm.o] Error 2
5446 make[3]: *** Waiting for unfinished jobs....
>> 5447 "x86_64/corenrn/mod2c/cacummb.cpp", line 40: catastrophic error: c
annot open source file "Eigen/Core"
5448 #include <Eigen/Core>
5449 ^
5450
5451 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/cacummb.cpp".
5452 Compilation terminated.
>> 5453 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5w
jt/spack-build-plrm5ht/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/cacummb.o] Error 2
5454 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht/test/nrnivmodl/3a24bd33c51ee3
0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a'
>> 5455 make[2]: *** [test/external/channel-benchmark/CMakeFiles/NRN_TEST_
nrnivmodl_3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47c3
be88641a.dir/build.make:135: test/nrnivmodl/3a24bd33c51ee30c68f71d
610b146a37c165552933d5963dc6fd47c3be88641a/x86_64/special] Error 2
5456 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht'
>> 5457 make[1]: *** [CMakeFiles/Makefile2:11720: test/external/channel-be
nchmark/CMakeFiles/NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b14
6a37c165552933d5963dc6fd47c3be88641a.dir/all] Error 2
5458 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaa
ldnicwpv5yja5wjt/spack-build-plrm5ht'
>> 5459 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336164/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-plrm5htwgdejgmaaldnicwpv5yja5wjt/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i5n18: task 0: Exited with exit code 1
section_end:1719928828:step_script section_start:1719928828:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=6863 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1336164 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=6904 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1336164 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=6945 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1336164 responseStatus=201 Created token=glcbt-64
section_end:1719928830:upload_artifacts_on_failure section_start:1719928830:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1719928831:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-nvhpc-omp-legacy.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1719927907:resolve_secrets Resolving secrets
section_end:1719927907:resolve_secrets section_start:1719927907:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1760835865, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 219873, build ref , job ID 1336165
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1336165_PROD_P2160_CP4_C10
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2283876
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1336165_PROD_P2160_CP4_C10 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873 --ntasks=2 --jobid=2283876 --cpus-per-task=8 --mem=160G
section_end:1719927908:prepare_executor section_start:1719927908:prepare_script Preparing environment
Using git from spack modules
Running on r1i5n19 via bbpv1.epfl.ch...
section_end:1719927911:prepare_script section_start:1719927911:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1719927911:get_sources section_start:1719927911:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=101492 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1719927917:restore_cache section_start:1719927917:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1336160)...
Runtime platform  arch=amd64 os=linux pid=101901 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1336160 responseStatus=200 OK token=glcbt-64
section_end:1719927918:download_artifacts section_start:1719927918:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873/J1336165_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/pybnafj2h7zocbdq6dbaptu3rdx5fmtq
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2283876/ccache
Config file: /nvme/bbpcihpcproj12/2283876/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Tue Jul 2 15:45:24 2024
Local storage:
Cache size (GB): 0.46 / 0.51 (90.54%)
Files: 10143
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/pybnafj2h7zocbdq6dbaptu3rdx5fmtq
- ^caliper+cuda cuda_arch=70
Concretized
--------------------------------
- pe7g446 neuron@git.e073aa9242973a8e569db9979da021052107a808=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
- vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] pybnafj ^nmodl@git.066bd57e519c25975f7a57ac8961fb297160c16f=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a57ac8961fb297160c16f_develop-pybnaf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
==> Installing neuron-git.e073aa9242973a8e569db9979da021052107a808=develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd [55/55]
==> No binary for neuron-git.e073aa9242973a8e569db9979da021052107a808=develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
28 errors found in build log:
3064 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336158/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-st
age-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe
7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-buil
d/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_
develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmm
us5aldbjdd/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aax
hvifmsmmus5aldbjdd/spack-build-pe7g446 -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-sta
ge-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7
g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
65/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-
pe7g446/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9
242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus
5aldbjdd/spack-build-pe7g446/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165
/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021
052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe
7g446/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa
9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmu
s5aldbjdd/spack-build-pe7g446/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
9873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e5
69db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldb
jdd/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifms
mmus5aldbjdd/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446y
jl3aaxhvifmsmmus5aldbjdd/spack-src/src/nrnpython -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/src/parallel -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
65/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/sr
c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjd
d/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e0
73aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifm
smmus5aldbjdd/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage
-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g4
46yjl3aaxhvifmsmmus5aldbjdd/spack-src/src/sundials -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-bui
ld/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808
_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/src/sundials/c
vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2198
73/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569
db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spa
ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e
073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvif
msmmus5aldbjdd/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spa
ck-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_devel
op-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/src/nrniv/
oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl
ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack
-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa92429
73a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5ald
bjdd/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neur
on-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl
3aaxhvifmsmmus5aldbjdd/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-b
uild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a8
08_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjd
d/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446y
jl3aaxhvifmsmmus5aldbjdd/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa92
42973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5
aldbjdd/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/sp
ack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_deve
lop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/external/eigen -isy
stem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/
J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9
979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-
src/external/nanobind/include -tp haswell -g -O1 -fno-omit-frame-p
ointer --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186
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v_lib.dir/__/ivoc/grmanip.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/iv
oc/grmanip.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/grmanip.cpp
.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack
-src/src/ivoc/grmanip.cpp
3065 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/hocmark.cpp.o
3066 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336158/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-st
age-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe
7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-buil
d/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_
develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmm
us5aldbjdd/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aax
hvifmsmmus5aldbjdd/spack-build-pe7g446 -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-sta
ge-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7
g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
65/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-
pe7g446/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9
242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus
5aldbjdd/spack-build-pe7g446/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165
/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021
052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe
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s5aldbjdd/spack-build-pe7g446/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
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ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
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bjdd/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
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bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/sp
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ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0
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ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/sp
ack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_deve
lop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/external/eigen -isy
stem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/
J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9
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src/external/nanobind/include -tp haswell -g -O1 -fno-omit-frame-p
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/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack
-src/src/ivoc/hocmark.cpp
3067 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5al
dbjdd/spack-build-pe7g446 MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software
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fb297160c16f_develop-pybnaf/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
3068 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxh
vifmsmmus5aldbjdd/spack-build-pe7g446/bin'
3069 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3070 make[3]: xcrun: No such file or directory
3071 Default NMODL flags:
>> 3072 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3073 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3074 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3075 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3076 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
3077 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/htlist.cpp.o
3078 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
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cihpcproj12/P219873/J1336158/spack/lib/spack/env/nvhpc/nvc++ -DCOR
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08_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjd
d/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446y
jl3aaxhvifmsmmus5aldbjdd/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa92
42973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5
aldbjdd/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/sp
ack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_deve
lop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/external/eigen -isy
stem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/
J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9
979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-
src/external/nanobind/include -tp haswell -g -O1 -fno-omit-frame-p
ointer --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186
,541,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrni
v_lib.dir/__/ivoc/htlist.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivo
c/htlist.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o
-c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-sr
c/src/ivoc/htlist.cpp
...
3858 INFO:root:RX3D is DISABLED
3859 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/7378b0d1010df9
fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/x86_64/./libnrn
mech.so"
3860 Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./un
itstest.mod" "./version_macros.mod"
3861
3862 Creating 'x86_64' directory for .o files.
3863
>> 3864 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s
ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu
ptools.installer and fetch_build_eggs are deprecated.
3865 !!
3866
3867 **********************************************************
**********************
3868 Requirements should be satisfied by a PEP 517 installer.
3869 If you are using pip, you can try `pip install --use-pep51
7`.
3870 **********************************************************
**********************
...
3888 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxh
vifmsmmus5aldbjdd/spack-build-pe7g446'
3889 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5al
dbjdd/spack-build-pe7g446 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
3890 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxh
vifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/c448d279dd3b9
1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
3891 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
3892 [ 42%] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db
6e16b2211fb308c533e45334f2/vlag.mod
3893 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifms
mmus5aldbjdd/spack-src/share/examples/nrniv/nmodl/vlag.mod /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spa
ck-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210521
07a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g44
6/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb
308c533e45334f2/vlag.mod
>> 3894 make[3]: xcrun: No such file or directory
3895 Default NMODL flags:
>> 3896 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3897 [ 42%] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db
6e16b2211fb308c533e45334f2/argpass.mod
3898 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifms
mmus5aldbjdd/spack-src/share/examples/nrniv/nmodl/argpass.mod /gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/
spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210
52107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7
g446/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b221
1fb308c533e45334f2/argpass.mod
3899 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3900 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3901 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3902 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
...
4602 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/external/tests/red
uced_dentate//mechanisms/Aradi_Na.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g44
6yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi
_Na.mod
4603 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5al
dbjdd/spack-build-pe7g446 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4604 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxh
vifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
4605 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4606 [ 45%] Building special[-core] for test group external_ringtest
4607 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da451
4b4383a54de8ff121657615ff && cmake -E env NEURONHOME=/gpfs/bbp\.cs
cs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-b
uild/spack-stage-neuron-git\.e073aa9242973a8e569db9979da021052107a
808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/s
hare/nrn NRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336165/spack-build/spack-stage-neuron-git\.e073aa9
242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus
5aldbjdd/spack-build-pe7g446 PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-ne
uron-git\.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446
yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/bin:/gpfs/bbp\.cscs\
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.
0-skylake/readline-8\.2-pdugg7/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-co
verage-7\.2\.6-wuxetk/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02
-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3
\.2-lrf2u3/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/bi
n:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/bin:/gpfs/bbp
\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/ins
tall_gcc-12\.3\.0-skylake/nmodl-git\.066bd57e519c25975f7a57ac8961f
b297160c16f_develop-pybnaf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy-
1\.11\.1-t5tove/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1
-tabj2m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5d
ylnc/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/software/install_nvhpc-23\.1-skylake/libsonata-report-git\.5
602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi/bin:/gpfs/b
bp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/i
nstall_gcc-12\.3\.0-skylake/caliper-2\.11\.0-vjj3tp/bin:/gpfs/bbp\
.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2\.3\.0-skylake/gettext-0\.22\.3-nbi5w5/bin:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyl
ake/pigz-2\.7-dwjcgu/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12\.3\.0-skylake/ncurses-6\.4-6k
dbhv/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applica
tions/install_gcc-12\.3\.0-skylake/pkgconf-1\.9\.5-e533uu/bin:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install
_gcc-12\.3\.0-skylake/gmake-4\.4\.1-swjylu/bin:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-s
kylake/zstd-1\.5\.5-aivjoo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/xz-5\.4\.
1-wwn5en/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_app
lications/install_gcc-12\.3\.0-skylake/bzip2-1\.0\.8-vdqwmg/bin:/g
pfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.c
h/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-sky
lake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2
024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/intel-oneap
i-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gpfs/bbp\.cscs
\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-
skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.cscs\.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/
ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02
-01/stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.6\.3-edx4
lf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals
/install_gcc-12\.3\.0-skylake/cuda-12\.0\.0-ucajzb/bin:/gpfs/bbp\.
cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3
\.0-skylake/cmake-3\.27\.7-slyoes/bin:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/bison
-3\.8\.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336158/spack/lib/spack/env/nvhpc:/gpfs/bbp\.csc
s\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/li
b/spack/env/case-insensitive:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P219873/J1336158/spack/lib/spack/env:/gpfs/bbp\.
cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3
\.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/
intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_external
s/install_gcc-12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\
.3\.0-skylake/flex-2\.6\.3-edx4lf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/pytho
n-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12\.3\.0-skylake/cuda-12\.0\.0-ucajzb/
bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/in
stall_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/bin:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc
c-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/gpfs/bbp\.cscs\.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylak
e/m4-1\.4\.19-wtcpud/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_externals/install_gcc-12\.3\.0-skylake/bison-3\.8\.2-qcx3
sg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals
/install_gcc-12\.3\.0-skylake/binutils-2\.41-vvcm5q/bin:/gpfs/bbp\
.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.
3\.0-skylake/nvhpc-23\.1-vficpy/Linux_x86_64/23\.1/compilers/bin:/
gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/boot
strap/store/linux-centos7-x86_64/gcc-10\.2\.1/patchelf-0\.18\.0-af
v7arjarb7nzmlh7c5slkfxykybuqce/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/ccache-4
\.7\.4-eompz5/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P219873/J1336158/spack/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/git-2\.42
\.0-sie4gc/bin:/opt/clmgr/sbin:/opt/clmgr/bin:/opt/sgi/sbin:/opt/s
gi/bin:/usr/lib64/qt-3\.3/bin:/usr/lib64/ccache:/usr/local/bin:/bi
n:/usr/bin:/usr/local/sbin:/usr/sbin:/gpfs/bbp\.cscs\.ch/ssd/apps/
bb5/systemtools:/opt/c3/bin:/opt/ddn/ime/bin:/opt/puppetlabs/bin:/
sbin:/bin:/gpfs/bbp\.cscs\.ch/home/bbpcihpcproj12/\.local/bin:/gpf
s/bbp\.cscs\.ch/home/bbpcihpcproj12/bin LD_LIBRARY_PATH=/gpfs/bbp\
.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spac
k-build/spack-stage-neuron-git\.e073aa9242973a8e569db9979da0210521
07a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g44
6/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/
install_gcc-12\.3\.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mk
l/2023\.2\.0/lib/intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_externals/install_gcc-12\.3\.0-skylake/intel-oneapi-mkl-2
023\.2\.0-twl2n4/mkl/2023\.2\.0/lib/intel64:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake
/hpe-mpi-2\.27\.p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/nvhpc-2
3\.1-vficpy/Linux_x86_64/23\.1/compilers/lib:/gpfs/bbp\.cscs\.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylak
e/cuda-12\.0\.0-ucajzb/extras/CUPTI/lib64:/gpfs/bbp\.cscs\.ch/ssd/
apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/h
pe-mpi-2\.27\.p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/hdf5-1
\.14\.3-5o77ye/lib CORENRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuro
n-git\.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl
3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446 PYTHONPATH=/gpfs/bbp\.c
scs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-
build/spack-stage-neuron-git\.e073aa9242973a8e569db9979da021052107
a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/
lib/python:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336165/spack-build/spack-stage-neuron-git\.e073aa9242973
a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbj
dd/spack-src/test/rxd:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/software/install_gcc-12\.3\.0-skylake/nmodl-git
\.066bd57e519c25975f7a57ac8961fb297160c16f_develop-pybnaf/lib:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install
_gcc-12\.3\.0-skylake/py-pytest-cov-4\.0\.0-z5nf6n/lib/python3\.11
/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-coverage-7\.2\.6-wuxet
k/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2
024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytes
t-7\.3\.2-lrf2u3/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-s
kylake/py-iniconfig-2\.0\.0-mvxx6g/lib/python3\.11/site-packages:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12\.3\.0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/python3\.11/
site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_ap
plications/install_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/l
ib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024
-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-mpi4py-3
\.1\.4-x733hw/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyl
ake/py-sympy-1\.11\.1-t5tove/lib/python3\.11/site-packages:/gpfs/b
bp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gc
c-12\.3\.0-skylake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.11/site-p
ackages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicat
ions/install_gcc-12\.3\.0-skylake/py-packaging-23\.1-uqml2t/lib/py
thon3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-0
1/stage_applications/install_gcc-12\.3\.0-skylake/py-pyyaml-5\.4\.
1-2inh3r/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/app
s/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/p
y-pybind11-2\.11\.1-tabj2m/lib/python3\.11/site-packages:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-
12\.3\.0-skylake/py-jinja2-3\.1\.2-7valid/lib/python3\.11/site-pac
kages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicatio
ns/install_gcc-12\.3\.0-skylake/py-markupsafe-2\.1\.3-r3ehtm/lib/p
ython3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12\.3\.0-skylake/py-find-libpyth
on-0\.3\.1-5dylnc/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.c
h/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-
skylake/py-setuptools-68\.0\.0-p3xbqx/lib/python3\.11/site-package
s:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/lib/python3\.11
/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-setuptools-68\.0\.0-p3
xbqx/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-co
verage-7\.2\.6-wuxetk/lib/python3\.11/site-packages:/gpfs/bbp\.csc
s\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3
\.0-skylake/py-pip-23\.1\.2-77ku3v/lib/python3\.11/site-packages:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12\.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/lib/python3\.11/
site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_ap
plications/install_gcc-12\.3\.0-skylake/py-sympy-1\.11\.1-t5tove/l
ib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024
-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pluggy-1
\.0\.0-6su7kv/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyl
ake/py-packaging-23\.1-uqml2t/lib/python3\.11/site-packages:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_g
cc-12\.3\.0-skylake/py-iniconfig-2\.0\.0-mvxx6g/lib/python3\.11/si
te-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12\.3\.0-skylake/py-pytest-cov-4\.0\.0-z5nf6n
/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-numpy-
1\.26\.1-elr5pn/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/
ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-sk
ylake/py-pytest-7\.3\.2-lrf2u3/lib/python3\.11/site-packages:/gpfs
/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_
gcc-12\.3\.0-skylake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.11/site
-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/misc:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-
12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/misc /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/bin/nrnivmodl
-coreneuron .
>> 4608 make[3]: xcrun: No such file or directory
4609 Default NMODL flags:
>> 4610 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4611 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4612 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4613 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/CaBK.mod
4614 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/external/tests/red
uced_dentate//mechanisms/CaBK.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neur
on-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl
3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/53c432f7
080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
4615 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build
-pe7g446/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4
383a54de8ff121657615ff
4616 cfiles =
...
4634 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/external/tests/red
uced_dentate//mechanisms/DGC_sAHP.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g44
6yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_s
AHP.mod
4635 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5al
dbjdd/spack-build-pe7g446 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4636 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxh
vifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
4637 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4638 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
4639 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/external/tests/red
uced_dentate//mechanisms/Gfluct3.mod /gpfs/bbp.cscs.ch/ssd/gitlab_
map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-n
euron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446
yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/53c43
2f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct
3.mod
>> 4640 make[3]: xcrun: No such file or directory
4641 Default NMODL flags:
>> 4642 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4643 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/LcaMig.mod
4644 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/external/tests/red
uced_dentate//mechanisms/LcaMig.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446y
jl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.
mod
4645 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4646 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4647 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4648 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
...
4818 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5al
dbjdd/spack-build-pe7g446 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4819 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5al
dbjdd/spack-build-pe7g446 INCFLAGS=-I/usr/include LINKFLAGS=/usr/l
ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC
NRN_PRCELLSTATE=0
4820 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxh
vifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/b62f97c7d3f6d
905c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
4821 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4822 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxh
vifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/f7f437ac4f0ea
140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c'
4823 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4824 make[3]: xcrun: No such file or directory
4825 Default NMODL flags:
>> 4826 make[3]: xcrun: No such file or directory
4827 Default NMODL flags:
4828 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/CaDynamics_DC0.mod
4829 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/CaDynamics_DC0.mod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build
-pe7g446/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933
d5963dc6fd47c3be88641a/CaDynamics_DC0.mod
>> 4830 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4831 [NMODL] [warning] :: Can not inline function call to mynormrand
4832 [NMODL] [warning] :: Can not inline function call to mynormrand
4833 [NMODL] [warning] :: Can not inline function call to mynormrand
4834 [NMODL] [warning] :: Can not inline function call to mynormrand
>> 4835 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4836 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/263a5c542e063e
e6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/./libnrn
mech.so"
4837 [NMODL] [warning] :: Can not inline function call to specify_invl
4838 [NMODL] [warning] :: Can not inline function call to specify_invl
4839 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4840 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4841 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
...
4852 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
4853 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/Ca_HVA.mod
4854 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/Ca_HVA.mod /gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446
/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6
fd47c3be88641a/Ca_HVA.mod
4855 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5al
dbjdd/spack-build-pe7g446 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4856 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxh
vifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/53c432f7080fe
7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
4857 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4858 make[3]: xcrun: No such file or directory
4859 Default NMODL flags:
>> 4860 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4861 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4862 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4863 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4864 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/Ca_HVA2.mod
4865 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/Ca_HVA2.mod /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spa
ck-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210521
07a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g44
6/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc
6fd47c3be88641a/Ca_HVA2.mod
4866 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
...
5018 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552
933d5963dc6fd47c3be88641a && cmake -E env NEURONHOME=/gpfs/bbp\.cs
cs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-b
uild/spack-stage-neuron-git\.e073aa9242973a8e569db9979da021052107a
808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/s
hare/nrn NRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336165/spack-build/spack-stage-neuron-git\.e073aa9
242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus
5aldbjdd/spack-build-pe7g446 PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-ne
uron-git\.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446
yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/bin:/gpfs/bbp\.cscs\
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.
0-skylake/readline-8\.2-pdugg7/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-co
verage-7\.2\.6-wuxetk/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02
-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3
\.2-lrf2u3/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/bi
n:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/bin:/gpfs/bbp
\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/ins
tall_gcc-12\.3\.0-skylake/nmodl-git\.066bd57e519c25975f7a57ac8961f
b297160c16f_develop-pybnaf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy-
1\.11\.1-t5tove/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1
-tabj2m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5d
ylnc/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/software/install_nvhpc-23\.1-skylake/libsonata-report-git\.5
602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi/bin:/gpfs/b
bp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/i
nstall_gcc-12\.3\.0-skylake/caliper-2\.11\.0-vjj3tp/bin:/gpfs/bbp\
.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2\.3\.0-skylake/gettext-0\.22\.3-nbi5w5/bin:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyl
ake/pigz-2\.7-dwjcgu/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12\.3\.0-skylake/ncurses-6\.4-6k
dbhv/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applica
tions/install_gcc-12\.3\.0-skylake/pkgconf-1\.9\.5-e533uu/bin:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install
_gcc-12\.3\.0-skylake/gmake-4\.4\.1-swjylu/bin:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-s
kylake/zstd-1\.5\.5-aivjoo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/xz-5\.4\.
1-wwn5en/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_app
lications/install_gcc-12\.3\.0-skylake/bzip2-1\.0\.8-vdqwmg/bin:/g
pfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.c
h/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-sky
lake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2
024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/intel-oneap
i-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gpfs/bbp\.cscs
\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-
skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.cscs\.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/
ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02
-01/stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.6\.3-edx4
lf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals
/install_gcc-12\.3\.0-skylake/cuda-12\.0\.0-ucajzb/bin:/gpfs/bbp\.
cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3
\.0-skylake/cmake-3\.27\.7-slyoes/bin:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/bison
-3\.8\.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336158/spack/lib/spack/env/nvhpc:/gpfs/bbp\.csc
s\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/li
b/spack/env/case-insensitive:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P219873/J1336158/spack/lib/spack/env:/gpfs/bbp\.
cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3
\.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/
intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_external
s/install_gcc-12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\
.3\.0-skylake/flex-2\.6\.3-edx4lf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps
/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/pytho
n-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12\.3\.0-skylake/cuda-12\.0\.0-ucajzb/
bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/in
stall_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/bin:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc
c-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/gpfs/bbp\.cscs\.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylak
e/m4-1\.4\.19-wtcpud/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_externals/install_gcc-12\.3\.0-skylake/bison-3\.8\.2-qcx3
sg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals
/install_gcc-12\.3\.0-skylake/binutils-2\.41-vvcm5q/bin:/gpfs/bbp\
.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.
3\.0-skylake/nvhpc-23\.1-vficpy/Linux_x86_64/23\.1/compilers/bin:/
gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/boot
strap/store/linux-centos7-x86_64/gcc-10\.2\.1/patchelf-0\.18\.0-af
v7arjarb7nzmlh7c5slkfxykybuqce/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/ccache-4
\.7\.4-eompz5/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P219873/J1336158/spack/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/git-2\.42
\.0-sie4gc/bin:/opt/clmgr/sbin:/opt/clmgr/bin:/opt/sgi/sbin:/opt/s
gi/bin:/usr/lib64/qt-3\.3/bin:/usr/lib64/ccache:/usr/local/bin:/bi
n:/usr/bin:/usr/local/sbin:/usr/sbin:/gpfs/bbp\.cscs\.ch/ssd/apps/
bb5/systemtools:/opt/c3/bin:/opt/ddn/ime/bin:/opt/puppetlabs/bin:/
sbin:/bin:/gpfs/bbp\.cscs\.ch/home/bbpcihpcproj12/\.local/bin:/gpf
s/bbp\.cscs\.ch/home/bbpcihpcproj12/bin LD_LIBRARY_PATH=/gpfs/bbp\
.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spac
k-build/spack-stage-neuron-git\.e073aa9242973a8e569db9979da0210521
07a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g44
6/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/
install_gcc-12\.3\.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mk
l/2023\.2\.0/lib/intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_externals/install_gcc-12\.3\.0-skylake/intel-oneapi-mkl-2
023\.2\.0-twl2n4/mkl/2023\.2\.0/lib/intel64:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake
/hpe-mpi-2\.27\.p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/nvhpc-2
3\.1-vficpy/Linux_x86_64/23\.1/compilers/lib:/gpfs/bbp\.cscs\.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylak
e/cuda-12\.0\.0-ucajzb/extras/CUPTI/lib64:/gpfs/bbp\.cscs\.ch/ssd/
apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/h
pe-mpi-2\.27\.p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/hdf5-1
\.14\.3-5o77ye/lib CORENRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuro
n-git\.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl
3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446 PYTHONPATH=/gpfs/bbp\.c
scs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-
build/spack-stage-neuron-git\.e073aa9242973a8e569db9979da021052107
a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/
lib/python:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336165/spack-build/spack-stage-neuron-git\.e073aa9242973
a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbj
dd/spack-src/test/rxd:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/software/install_gcc-12\.3\.0-skylake/nmodl-git
\.066bd57e519c25975f7a57ac8961fb297160c16f_develop-pybnaf/lib:/gpf
s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install
_gcc-12\.3\.0-skylake/py-pytest-cov-4\.0\.0-z5nf6n/lib/python3\.11
/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-coverage-7\.2\.6-wuxet
k/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2
024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytes
t-7\.3\.2-lrf2u3/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch
/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-s
kylake/py-iniconfig-2\.0\.0-mvxx6g/lib/python3\.11/site-packages:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12\.3\.0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/python3\.11/
site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_ap
plications/install_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/l
ib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024
-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-mpi4py-3
\.1\.4-x733hw/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyl
ake/py-sympy-1\.11\.1-t5tove/lib/python3\.11/site-packages:/gpfs/b
bp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gc
c-12\.3\.0-skylake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.11/site-p
ackages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicat
ions/install_gcc-12\.3\.0-skylake/py-packaging-23\.1-uqml2t/lib/py
thon3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-0
1/stage_applications/install_gcc-12\.3\.0-skylake/py-pyyaml-5\.4\.
1-2inh3r/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/app
s/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/p
y-pybind11-2\.11\.1-tabj2m/lib/python3\.11/site-packages:/gpfs/bbp
\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-
12\.3\.0-skylake/py-jinja2-3\.1\.2-7valid/lib/python3\.11/site-pac
kages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicatio
ns/install_gcc-12\.3\.0-skylake/py-markupsafe-2\.1\.3-r3ehtm/lib/p
ython3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12\.3\.0-skylake/py-find-libpyth
on-0\.3\.1-5dylnc/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.c
h/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-
skylake/py-setuptools-68\.0\.0-p3xbqx/lib/python3\.11/site-package
s:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/lib/python3\.11
/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12\.3\.0-skylake/py-setuptools-68\.0\.0-p3
xbqx/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-co
verage-7\.2\.6-wuxetk/lib/python3\.11/site-packages:/gpfs/bbp\.csc
s\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3
\.0-skylake/py-pip-23\.1\.2-77ku3v/lib/python3\.11/site-packages:/
gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12\.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/lib/python3\.11/
site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_ap
plications/install_gcc-12\.3\.0-skylake/py-sympy-1\.11\.1-t5tove/l
ib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024
-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pluggy-1
\.0\.0-6su7kv/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ss
d/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyl
ake/py-packaging-23\.1-uqml2t/lib/python3\.11/site-packages:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_g
cc-12\.3\.0-skylake/py-iniconfig-2\.0\.0-mvxx6g/lib/python3\.11/si
te-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12\.3\.0-skylake/py-pytest-cov-4\.0\.0-z5nf6n
/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20
24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-numpy-
1\.26\.1-elr5pn/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/
ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-sk
ylake/py-pytest-7\.3\.2-lrf2u3/lib/python3\.11/site-packages:/gpfs
/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_
gcc-12\.3\.0-skylake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.11/site
-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/misc:/gpfs/
bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-
12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/misc /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/bin/nrnivmodl
-coreneuron .
5019 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build
-pe7g446/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933
d5963dc6fd47c3be88641a
5020 cfiles =
5021 Mod files: "./Ca.mod" "./CaDynamics_DC0.mod" "./CaDynamics_E2.mod"
"./Ca_HVA.mod" "./Ca_HVA2.mod" "./Ca_LVAst.mod"[INFO] Running: ma
ke -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
9873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e5
69db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/s
pack-build-pe7g446/share/coreneuron/nrnivmodl_core_makefile ROOT=/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
65/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-
pe7g446 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC NRN_PRCEL
LSTATE=0
5022 "./CoreConfig.mod"make[3]: Entering directory '/gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/sp
ack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_deve
lop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/test/nrni
vmodl/14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f0689cf9
faab'
5023 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5024 "./Ih.mod"make[3]: xcrun: No such file or directory
5025 Default NMODL flags:
>> 5026 "./Im.mod" "./K_Pst.mod" "./K_Tst.mod" "./KdShu2007.mod"diff: x86
_64/corenrn/mod2c/_mod_func.cpp: No such file or directory
5027 "./NaTa_t.mod"[NMODL] [warning] :: SYMTAB :: step [Argument] in p
last shadows <extern_method> definition in NMODL_GLOBAL
5028 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5029 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5030 "./NaTg.mod" "./NaTs2_t.mod" "./Nap_Et2.mod" "./ProbAMPANMDA_EMS.
mod" "./ProbGABAAB_EMS.mod"[NMODL] [warning] :: SYMTAB :: step [Ar
gument] in plast shadows <extern_method> definition in NMODL_GLOBA
L
5031 [NMODL] [warning] :: SYMTAB :: w [Argument] in NetReceiveBlock sha
dows <assigned_definition> definition in NMODL_GLOBAL
5032 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
...
5074 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build
-pe7g446/share/nrn/nrnmain.cpp:
5075 => Binary creating x86_64/special-core
5076 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build
-pe7g446/share/coreneuron/coreneuron.cpp:
5077 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5al
dbjdd/spack-build-pe7g446 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5078 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxh
vifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/3a24bd33c51ee
30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a'
5079 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5080 make[3]: xcrun: No such file or directory
5081 Default NMODL flags:
>> 5082 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5083 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5084 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5085 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5086 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5087 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
5088 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
...
5110 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
5111 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283876/pgcudafatf6cGp3BrVLdO.o: missing .note.GNU-sta
ck section implies executable stack
5112 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5113 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/c448d279dd3b91
940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64'
5114 Successfully created x86_64/special
5115 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446'
>> 5116 "x86_64/corenrn/mod2c/hhkin.cpp", line 40: catastrophic error: can
not open source file "Eigen/Core"
5117 #include <Eigen/Core>
5118 ^
5119
5120 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/hhkin.cpp".
5121 Compilation terminated.
>> 5122 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbj
dd/spack-build-pe7g446/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/hhkin.o] Error 2
5123 make[3]: *** Waiting for unfinished jobs....
5124 [ 49%] Built target NRN_TEST_nrnivmodl_c448d279dd3b91940d228c42e4a
7c280bafe100b4e840f9c938be979cceb8fe0
5125 make -f CMakeFiles/generate-neurondemo-mechanism-library.dir/buil
d.make CMakeFiles/generate-neurondemo-mechanism-library.dir/depend
5126 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxh
vifmsmmus5aldbjdd/spack-build-pe7g446'
5127 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-bu
ild-pe7g446 && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron
-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3a
axhvifmsmmus5aldbjdd/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-
git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aa
xhvifmsmmus5aldbjdd/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aax
hvifmsmmus5aldbjdd/spack-build-pe7g446 /gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage
-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g4
46yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446 /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/sp
ack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_deve
lop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-pe7g446/CMakeFile
s/generate-neurondemo-mechanism-library.dir/DependInfo.cmake "--co
lor="
5128 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446'
...
5191 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/share/nrn/demo/release/x86_64
/./libnrnmech.so"
5192 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifms
mmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/a9c54b18e4b54351cb
4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./special" L
DFLAGS are:
5193 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build
-pe7g446/share/nrn/nrnmain.cpp:
5194 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifms
mmus5aldbjdd/spack-build-pe7g446/share/nrn/demo/release/x86_64/./s
pecial" LDFLAGS are:
5195 => Binary creating x86_64/special-core
5196 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/b62f97c7d3f6d9
05c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
>> 5197 make[2]: *** [test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivm
odl_b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee8
76.dir/build.make:95: test/nrnivmodl/b62f97c7d3f6d905c774d64e10128
b3300792f8f757b926b965c058a4d6ee876/x86_64/special] Error 2
5198 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446'
>> 5199 make[1]: *** [CMakeFiles/Makefile2:9572: test/external/testcorenrn
/CMakeFiles/NRN_TEST_nrnivmodl_b62f97c7d3f6d905c774d64e10128b33007
92f8f757b926b965c058a4d6ee876.dir/all] Error 2
5200 make[1]: *** Waiting for unfinished jobs....
5201 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build
-pe7g446/share/coreneuron/coreneuron.cpp:
5202 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/share/nrn/demo/release/x86_64
'
5203 Successfully created x86_64/special
5204 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446'
5205 [ 49%] Built target generate-neurondemo-mechanism-library
...
5247 located in a section and is not associated with an integrator
5248 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbj
dd/spack-build-pe7g446/test/nrnivmodl/f7f437ac4f0ea140e809f1bdd7f7
d03201e354b9a2041597f8faaf7fb7aebb7c/x86_64/invlfire.cpp
5249 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbj
dd/spack-build-pe7g446/test/nrnivmodl/f7f437ac4f0ea140e809f1bdd7f7
d03201e354b9a2041597f8faaf7fb7aebb7c/x86_64/invlfirestats.cpp
5250 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/f7f437ac4f0ea1
40e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/x86_64/./libnrn
mech.so"
5251 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifms
mmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/f7f437ac4f0ea140e8
09f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/x86_64/./special" L
DFLAGS are: /usr/lib64/libcrypto.so
5252 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build
-pe7g446/share/nrn/nrnmain.cpp:
>> 5253 "x86_64/corenrn/mod2c/SH_na8st.cpp", line 40: catastrophic error:
cannot open source file "Eigen/Core"
5254 #include <Eigen/Core>
5255 ^
5256
5257 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/SH_na8st.cpp".
5258 Compilation terminated.
>> 5259 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbj
dd/spack-build-pe7g446/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/SH_na8st.o] Error 2
5260 make[3]: *** Waiting for unfinished jobs....
5261 => Binary creating x86_64/special-core
5262 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283876/pgcudafatRvwGb9lvb3Zp.o: missing .note.GNU-sta
ck section implies executable stack
5263 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5264 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/f7f437ac4f0ea1
40e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/x86_64'
5265 Successfully created x86_64/special
5266 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build
-pe7g446/share/coreneuron/coreneuron.cpp:
5267 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446'
5268 [ 49%] Built target NRN_TEST_nrnivmodl_f7f437ac4f0ea140e809f1bdd7f
7d03201e354b9a2041597f8faaf7fb7aebb7c
5269 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/53c432f7080fe7
b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
>> 5270 make[2]: *** [test/external/reduced_dentate/CMakeFiles/NRN_TEST_nr
nivmodl_53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5
edfead.dir/build.make:117: test/nrnivmodl/53c432f7080fe7b786e16536
f2d17f96d387425d200c645a6b4cec93b5edfead/x86_64/special] Error 2
5271 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446'
>> 5272 make[1]: *** [CMakeFiles/Makefile2:8970: test/external/reduced_den
tate/CMakeFiles/NRN_TEST_nrnivmodl_53c432f7080fe7b786e16536f2d17f9
6d387425d200c645a6b4cec93b5edfead.dir/all] Error 2
5273 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283876/pgcudafatsMzG2M0oG09z.o: missing .note.GNU-sta
ck section implies executable stack
5274 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5275 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/c35d2f235e0f38
60fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
5276 [INFO] MOD files built successfully for CoreNEURON
5277 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxh
vifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64'
5278 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
...
5681 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
5682 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446/test/nrnivmodl/3a24bd33c51ee3
0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64'
5683 Successfully created x86_64/special
5684 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446'
5685 [ 49%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1
46a37c165552933d5963dc6fd47c3be88641a
5686 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhv
ifmsmmus5aldbjdd/spack-build-pe7g446'
>> 5687 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336165/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-pe7g446yjl3aaxhvifmsmmus5aldbjdd/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i5n19: task 0: Exited with exit code 1
section_end:1719929896:step_script section_start:1719929896:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=134862 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1336165 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=134903 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1336165 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=134943 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1336165 responseStatus=201 Created token=glcbt-64
section_end:1719929897:upload_artifacts_on_failure section_start:1719929897:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1719929898:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-nvhpc-omp.txt
This file has been truncated, but you can view the full file.
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1719927908:resolve_secrets Resolving secrets
section_end:1719927908:resolve_secrets section_start:1719927908:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1850390613, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 219873, build ref , job ID 1336166
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1336166_PROD_P2160_CP5_C11
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2283877
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1336166_PROD_P2160_CP5_C11 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873 --ntasks=2 --jobid=2283877 --cpus-per-task=8 --mem=160G
section_end:1719927911:prepare_executor section_start:1719927911:prepare_script Preparing environment
Using git from spack modules
Running on r1i5n19 via bbpv1.epfl.ch...
section_end:1719927915:prepare_script section_start:1719927915:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1719927915:get_sources section_start:1719927915:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=101799 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1719927921:restore_cache section_start:1719927921:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1336160)...
Runtime platform  arch=amd64 os=linux pid=102478 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1336160 responseStatus=200 OK token=glcbt-64
section_end:1719927922:download_artifacts section_start:1719927922:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P219873/J1336166_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/pybnafj2h7zocbdq6dbaptu3rdx5fmtq
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2283877/ccache
Config file: /nvme/bbpcihpcproj12/2283877/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Tue Jul 2 15:45:27 2024
Local storage:
Cache size (GB): 0.46 / 0.51 (89.56%)
Files: 9825
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/pybnafj2h7zocbdq6dbaptu3rdx5fmtq
- ^caliper+cuda cuda_arch=70
Concretized
--------------------------------
- sxie3wk neuron@git.e073aa9242973a8e569db9979da021052107a808=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
- vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] pybnafj ^nmodl@git.066bd57e519c25975f7a57ac8961fb297160c16f=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a57ac8961fb297160c16f_develop-pybnaf
==> Installing caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 [54/55]
==> No binary for caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 found: installing from source
==> Fetching https://github.com/LLNL/Caliper/archive/v2.11.0.tar.gz
==> No patches needed for caliper
==> caliper: Executing phase: 'cmake'
==> caliper: Executing phase: 'build'
==> caliper: Executing phase: 'install'
==> caliper: Successfully installed caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2
Stage: 4.05s. Cmake: 9.33s. Build: 8.01s. Install: 1.06s. Post-install: 0.18s. Total: 22.94s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
==> Installing neuron-git.e073aa9242973a8e569db9979da021052107a808=develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt [55/55]
==> No binary for neuron-git.e073aa9242973a8e569db9979da021052107a808=develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
42 errors found in build log:
3064 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron
-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6
ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/bin', compiling default o
nes only!
3065 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/hocmark.cpp.o
3066 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336158/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-st
age-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sx
ie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-buil
d/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_
develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmz
p6vnzbbzwt/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6oz
kv34vpmzp6vnzbbzwt/spack-build-sxie3wk -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-sta
ge-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxi
e3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
66/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-
sxie3wk/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9
242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6
vnzbbzwt/spack-build-sxie3wk/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166
/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021
052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sx
ie3wk/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa
9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp
6vnzbbzwt/spack-build-sxie3wk/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
9873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e5
69db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbb
zwt/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vp
mzp6vnzbbzwt/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz
6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/nrnpython -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/parallel -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
66/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/sr
c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzw
t/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e0
73aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34v
pmzp6vnzbbzwt/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage
-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3
wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/sundials -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-bui
ld/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808
_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/sundials/c
vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2198
73/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569
db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spa
ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e
073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34
vpmzp6vnzbbzwt/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spa
ck-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_devel
op-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/src/nrniv/
oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl
ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack
-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa92429
73a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzb
bzwt/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neur
on-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6w
h6ozkv34vpmzp6vnzbbzwt/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-b
uild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a8
08_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzw
t/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz
6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa92
42973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6v
nzbbzwt/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/sp
ack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_deve
lop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/external/eigen -isy
stem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/
J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9
979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-
src/external/nanobind/include -tp haswell -g -O1 -fno-omit-frame-p
ointer --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186
,541,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrni
v_lib.dir/__/ivoc/hocmark.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/iv
oc/hocmark.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp
.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack
-src/src/ivoc/hocmark.cpp
3067 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnz
bbzwt/spack-build-sxie3wk MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/software
/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a57ac8961
fb297160c16f_develop-pybnaf/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
3068 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk/bin'
3069 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3070 make[3]: xcrun: No such file or directory
3071 Default NMODL flags:
>> 3072 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3073 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3074 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3075 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3076 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
3077 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/htlist.cpp.o
3078 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336158/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-st
age-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sx
ie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-buil
d/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_
develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
19873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e
569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073a
a9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmz
p6vnzbbzwt/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6oz
kv34vpmzp6vnzbbzwt/spack-build-sxie3wk -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-sta
ge-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxi
e3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
66/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-
sxie3wk/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9
242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6
vnzbbzwt/spack-build-sxie3wk/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166
/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021
052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sx
ie3wk/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa
9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp
6vnzbbzwt/spack-build-sxie3wk/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack
-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop
-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
9873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e5
69db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa924297
3a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbb
zwt/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vp
mzp6vnzbbzwt/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz
6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/nrnpython -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/parallel -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
66/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/sr
c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzw
t/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e0
73aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34v
pmzp6vnzbbzwt/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage
-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3
wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/sundials -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-bui
ld/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808
_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/sundials/c
vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2198
73/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569
db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spa
ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e
073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34
vpmzp6vnzbbzwt/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spa
ck-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_devel
op-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/src/nrniv/
oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl
ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873
/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db
9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack
-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa92429
73a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzb
bzwt/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neur
on-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6w
h6ozkv34vpmzp6vnzbbzwt/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-b
uild/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a8
08_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a
8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzw
t/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz
6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa92
42973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6v
nzbbzwt/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/sp
ack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_deve
lop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/external/eigen -isy
stem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/
J1336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9
979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-
src/external/nanobind/include -tp haswell -g -O1 -fno-omit-frame-p
ointer --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186
,541,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrni
v_lib.dir/__/ivoc/htlist.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivo
c/htlist.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o
-c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-sr
c/src/ivoc/htlist.cpp
...
3858 INFO:root:RX3D is DISABLED
3859 Mod files: => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3w
kz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/7378
b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/x86_6
4/./libnrnmech.so"
3860 "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mo
d" "./version_macros.mod"
3861
3862 Creating 'x86_64' directory for .o files.
3863
>> 3864 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s
ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu
ptools.installer and fetch_build_eggs are deprecated.
3865 !!
3866
3867 **********************************************************
**********************
3868 Requirements should be satisfied by a PEP 517 installer.
3869 If you are using pip, you can try `pip install --use-pep51
7`.
3870 **********************************************************
**********************
...
3883 make -f test/CMakeFiles/NRN_TEST_nrnivmodl_263a5c542e063ee6760ce5
1af8be262e1c89db6e16b2211fb308c533e45334f2.dir/build.make test/CMa
keFiles/NRN_TEST_nrnivmodl_263a5c542e063ee6760ce51af8be262e1c89db6
e16b2211fb308c533e45334f2.dir/depend
3884 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk'
3885 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron
-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6
ozkv34vpmzp6vnzbbzwt/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-
git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6o
zkv34vpmzp6vnzbbzwt/spack-src/test /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6
wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-
stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-
sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/test /gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk
/test/CMakeFiles/NRN_TEST_nrnivmodl_263a5c542e063ee6760ce51af8be26
2e1c89db6e16b2211fb308c533e45334f2.dir/DependInfo.cmake "--color="
3886 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnz
bbzwt/spack-build-sxie3wk MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
3887 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/c448d279dd3b9
1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
3888 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3889 make[3]: xcrun: No such file or directory
3890 Default NMODL flags:
3891 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk'
3892 make -f test/CMakeFiles/NRN_TEST_nrnivmodl_263a5c542e063ee6760ce5
1af8be262e1c89db6e16b2211fb308c533e45334f2.dir/build.make test/CMa
keFiles/NRN_TEST_nrnivmodl_263a5c542e063ee6760ce51af8be262e1c89db6
e16b2211fb308c533e45334f2.dir/build
3893 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk'
>> 3894 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3895 [ 42%] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db
6e16b2211fb308c533e45334f2/vlag.mod
3896 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vp
mzp6vnzbbzwt/spack-src/share/examples/nrniv/nmodl/vlag.mod /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spa
ck-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210521
07a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3w
k/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb
308c533e45334f2/vlag.mod
3897 [ 42%] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db
6e16b2211fb308c533e45334f2/argpass.mod
3898 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma
ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vp
mzp6vnzbbzwt/spack-src/share/examples/nrniv/nmodl/argpass.mod /gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/
spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210
52107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxi
e3wk/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b221
1fb308c533e45334f2/argpass.mod
3899 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
3900 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
...
4589 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron
-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6
ozkv34vpmzp6vnzbbzwt/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-
git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6o
zkv34vpmzp6vnzbbzwt/spack-src/test/external/ringtest /gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-bui
ld/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808
_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk /gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/
spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0210
52107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxi
e3wk/test/external/ringtest /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/external/ringtest/CMakeF
iles/NRN_TEST_nrnivmodl_a9c54b18e4b54351cb4fd3e79067cafa02da4514b4
383a54de8ff121657615ff.dir/DependInfo.cmake "--color="
4590 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
4591 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/external/tests/red
uced_dentate//mechanisms/Aradi_KA.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3w
kz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi
_KA.mod
4592 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnz
bbzwt/spack-build-sxie3wk MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4593 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/c35d2f235e0f3
860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7'
4594 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4595 make[3]: xcrun: No such file or directory
4596 Default NMODL flags:
4597 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk'
4598 make -f test/external/ringtest/CMakeFiles/NRN_TEST_nrnivmodl_a9c5
4b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff.dir/b
uild.make test/external/ringtest/CMakeFiles/NRN_TEST_nrnivmodl_a9c
54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff.dir/
build
4599 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk'
>> 4600 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4601 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4602 [NMODL] [error] :: PROTECT statement is not supported with GPU exe
cution
4603 [ 45%] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa
02da4514b4383a54de8ff121657615ff/halfgap.mod
4604 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
4605 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-st
age-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sx
ie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/external/tests/ringtest//
mod/halfgap.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa92429
73a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzb
bzwt/spack-build-sxie3wk/test/nrnivmodl/a9c54b18e4b54351cb4fd3e790
67cafa02da4514b4383a54de8ff121657615ff/halfgap.mod
4606 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/external/tests/red
uced_dentate//mechanisms/Aradi_KDRf.mod /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stag
e-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie
3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/53
c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Ara
di_KDRf.mod
...
4626 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/external/tests/red
uced_dentate//mechanisms/DGC_M.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neu
ron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6
wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/53c432f
7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mo
d
4627 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
4628 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/external/tests/red
uced_dentate//mechanisms/DGC_UK.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-ne
uron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz
6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/53c432
f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.
mod
4629 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnz
bbzwt/spack-build-sxie3wk MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4630 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/a9c54b18e4b54
351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff'
4631 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4632 make[3]: xcrun: No such file or directory
4633 Default NMODL flags:
4634 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
4635 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/external/tests/red
uced_dentate//mechanisms/DGC_sAHP.mod /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-
neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3w
kz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/53c4
32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_s
AHP.mod
>> 4636 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4637 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
4638 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd
/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm
ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/s
pack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_dev
elop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/external/tests/red
uced_dentate//mechanisms/Gfluct3.mod /gpfs/bbp.cscs.ch/ssd/gitlab_
map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-n
euron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wk
z6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/53c43
2f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct
3.mod
4639 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4640 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4641 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
4642 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96
d387425d200c645a6b4cec93b5edfead/LcaMig.mod
...
4818 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/263a5c542e063e
e6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/./libnrn
mech.so"
4819 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnz
bbzwt/spack-build-sxie3wk MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4820 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/CaDynamics_DC0.mod
4821 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/CaDynamics_DC0.mod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build
-sxie3wk/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933
d5963dc6fd47c3be88641a/CaDynamics_DC0.mod
4822 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/b62f97c7d3f6d
905c774d64e10128b3300792f8f757b926b965c058a4d6ee876'
4823 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4824 make[3]: xcrun: No such file or directory
4825 Default NMODL flags:
4826 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnz
bbzwt/spack-build-sxie3wk INCFLAGS=-I/usr/include LINKFLAGS=/usr/l
ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC
NRN_PRCELLSTATE=0
4827 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/f7f437ac4f0ea
140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c'
4828 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 4829 make[3]: xcrun: No such file or directory
4830 Default NMODL flags:
>> 4831 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4832 [NMODL] [warning] :: Can not inline function call to mynormrand
4833 [NMODL] [warning] :: Can not inline function call to mynormrand
4834 [NMODL] [warning] :: Can not inline function call to mynormrand
4835 [NMODL] [warning] :: Can not inline function call to mynormrand
>> 4836 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4837 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/CaDynamics_E2.mod
4838 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/CaDynamics_E2.mod /
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J13361
66/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da0
21052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-
sxie3wk/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d
5963dc6fd47c3be88641a/CaDynamics_E2.mod
4839 [NMODL] [warning] :: Can not inline function call to specify_invl
4840 [NMODL] [warning] :: Can not inline function call to specify_invl
4841 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnz
bbzwt/spack-build-sxie3wk MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
4842 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37
c165552933d5963dc6fd47c3be88641a/Ca_HVA.mod
4843 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build
/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052107a808_d
evelop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/external/tests/c
hannel-benchmark/benchmark/channels/lib/modlib/Ca_HVA.mod /gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/spac
k-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da02105210
7a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk
/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6
fd47c3be88641a/Ca_HVA.mod
4844 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/53c432f7080fe
7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead'
4845 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
4846 [NMODL] [warning] :: Can not inline function call to specify_invl
4847 [NMODL] [warning] :: Can not inline function call to specify_invl
>> 4848 make[3]: xcrun: No such file or directory
4849 Default NMODL flags:
>> 4850 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
4851 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4852 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4853 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion>
definition in NMODL_GLOBAL
4854 [NMODL] [warning] :: Can not inline function call to specify_invl
4855 [NMODL] [warning] :: Can not inline function call to specify_invl
4856 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vp
mzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/263a5c542e063ee676
0ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/./special" L
DFLAGS are:
...
5014 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
5015 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
5016 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
5017 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnz
bbzwt/spack-build-sxie3wk MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5018 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/14c92ceb412f1
b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab'
5019 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5020 make[3]: xcrun: No such file or directory
5021 Default NMODL flags:
>> 5022 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5023 Mod files: "./Ca.mod"[NMODL] [warning] :: SYMTAB :: step [Argument
] in plast shadows <extern_method> definition in NMODL_GLOBAL
5024 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5025 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e
xtern_method> definition in NMODL_GLOBAL
5026 "./CaDynamics_DC0.mod" "./CaDynamics_E2.mod" "./Ca_HVA.mod"[NMODL
] [warning] :: CVode solver of icur in 64.20-30 replaced with cnex
p solver
5027 "./Ca_HVA2.mod"[NMODL] [warning] :: SYMTAB :: celsius [Argument]
in KTF shadows <assigned_definition extern_neuron_var> definition
in NMODL_GLOBAL
5028 [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <
assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
...
5072 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/c448d279dd3b91
940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64/./libnrn
mech.so"
5073 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e07
3aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vp
mzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/c448d279dd3b91940d
228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64/./special" L
DFLAGS are:
5074 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build
-sxie3wk/share/nrn/nrnmain.cpp:
5075 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-git
.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv
34vpmzp6vnzbbzwt/spack-build-sxie3wk/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242
973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnz
bbzwt/spack-build-sxie3wk MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
E=STATIC NRN_PRCELLSTATE=0
5076 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk/test/nrnivmodl/3a24bd33c51ee
30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a'
5077 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 5078 make[3]: xcrun: No such file or directory
5079 Default NMODL flags:
>> 5080 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
5081 => Binary creating x86_64/special-core
5082 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build
-sxie3wk/share/coreneuron/coreneuron.cpp:
5083 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5084 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5085 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion
> definition in NMODL_GLOBAL
5086 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2283877/pgcudafatUrfFkZ-7CzFM.o: missing .note.GNU-sta
ck section implies executable stack
...
5099 make -f CMakeFiles/generate-neurondemo-mechanism-library.dir/buil
d.make CMakeFiles/generate-neurondemo-mechanism-library.dir/build
5100 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-gi
t.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozk
v34vpmzp6vnzbbzwt/spack-build-sxie3wk'
5101 [ 49%] Generating share/nrn/demo/release/x86_64/special, share/nrn
/demo/release/x86_64/libnrnmech.so
5102 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1
336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db997
9da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-bu
ild-sxie3wk/share/nrn/demo/release && /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2
7.7-slyoes/bin/cmake -E env NEURONHOME=/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage
-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie3
wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/share/nrn NRNHOME=
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build
-sxie3wk PATH=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbz
wt/spack-build-sxie3wk/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdug
g7/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_application
s/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk/bin:/gpfs/bb
p.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
2.3.0-skylake/py-pytest-7.3.2-lrf2u3/bin:/gpfs/bbp.cscs.ch/ssd/app
s/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-
pip-23.1.2-77ku3v/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
/bin:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/
software/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a
57ac8961fb297160c16f_develop-pybnaf/bin:/gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-s
ympy-1.11.1-t5tove/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/s
tage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-ta
bj2m/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applicati
ons/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc/bin:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/softw
are/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6
766ce23cd151a1855190271bd8_develop-az6cwi/bin:/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P219873/software/install_gcc-12.3
.0-skylake/caliper-2.11.0-vjj3tp/bin:/gpfs/bbp.cscs.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext
-0.22.3-nbi5w5/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu/bin:/gpfs
/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gc
c-12.3.0-skylake/ncurses-6.4-6kdbhv/bin:/gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgc
onf-1.9.5-e533uu/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu/bin:
/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
ll_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo/bin:/gpfs/bbp.cscs.ch/ssd/
apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/
xz-5.4.1-wwn5en/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg/bin:/
gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_g
cc-12.3.0-skylake/python-3.11.6-bj4i6m/bin:/gpfs/bbp.cscs.ch/ssd/a
pps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pyth
on-3.11.6-bj4i6m/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-
twl2n4/mkl/2023.2.0/bin/intel64:/gpfs/bbp.cscs.ch/ssd/apps/bsd/202
4-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1
.hmpt-6rr256/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_e
xternals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo/bin:/gpfs/
bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12
.3.0-skylake/flex-2.6.3-edx4lf/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/
2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-
ucajzb/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externa
ls/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin:/gpfs/bbp.cs
cs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-s
kylake/bison-3.8.2-qcx3sg/bin:/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336158/spack/lib/spack/env/nvhpc:/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336158/sp
ack/lib/spack/env/case-insensitive:/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P219873/J1336158/spack/lib/spack/env:/gpfs/b
bp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.
3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4/mkl/2023.2.0/bin/inte
l64:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/inst
all_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo/bin:/gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/
flex-2.6.3-edx4lf/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st
age_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/bin:
/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/cuda-12.0.0-ucajzb/bin:/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-m
pi-2.27.p1.hmpt-6rr256/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/
bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/inst
all_gcc-12.3.0-skylake/m4-1.4.19-wtcpud/bin:/gpfs/bbp.cscs.ch/ssd/
apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bis
on-3.8.2-qcx3sg/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_externals/install_gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin:/g
pfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc
c-12.3.0-skylake/nvhpc-23.1-vficpy/Linux_x86_64/23.1/compilers/bin
:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/boot
strap/store/linux-centos7-x86_64/gcc-10.2.1/patchelf-0.18.0-afv7ar
jarb7nzmlh7c5slkfxykybuqce/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024
-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eom
pz5/bin:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2198
73/J1336158/spack/bin:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st
age_externals/install_gcc-12.3.0-skylake/git-2.42.0-sie4gc/bin:/op
t/clmgr/sbin:/opt/clmgr/bin:/opt/sgi/sbin:/opt/sgi/bin:/usr/lib64/
qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/bin:/usr/bin:/usr/loc
al/sbin:/usr/sbin:/gpfs/bbp.cscs.ch/ssd/apps/bb5/systemtools:/opt/
c3/bin:/opt/ddn/ime/bin:/opt/puppetlabs/bin:/sbin:/bin:/gpfs/bbp.c
scs.ch/home/bbpcihpcproj12/.local/bin:/gpfs/bbp.cscs.ch/home/bbpci
hpcproj12/bin LD_LIBRARY_PATH=/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stage-neuron-g
it.e073aa9242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6oz
kv34vpmzp6vnzbbzwt/spack-build-sxie3wk/lib:/gpfs/bbp.cscs.ch/ssd/a
pps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/inte
l-oneapi-mkl-2023.2.0-twl2n4/mkl/2023.2.0/lib/intel64:/gpfs/bbp.cs
cs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-s
kylake/intel-oneapi-mkl-2023.2.0-twl2n4/mkl/2023.2.0/lib/intel64:/
gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_g
cc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib:/gpfs/bbp.cscs.c
h/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyla
ke/nvhpc-23.1-vficpy/Linux_x86_64/23.1/compilers/lib:/gpfs/bbp.csc
s.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-sk
ylake/cuda-12.0.0-ucajzb/extras/CUPTI/lib64:/gpfs/bbp.cscs.ch/ssd/
apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe
-mpi-2.27.p1.hmpt-6rr256/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-0
2-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o7
7ye/lib CORENRNHOME=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9
242973a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6
vnzbbzwt/spack-build-sxie3wk PYTHONPATH=/gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P219873/J1336166/spack-build/spack-stag
e-neuron-git.e073aa9242973a8e569db9979da021052107a808_develop-sxie
3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build-sxie3wk/lib/python:/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336166/sp
ack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da021052
107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-src/test/rx
d:/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/sof
tware/install_gcc-12.3.0-skylake/nmodl-git.066bd57e519c25975f7a57a
c8961fb297160c16f_develop-pybnaf/lib:/gpfs/bbp.cscs.ch/ssd/apps/bs
d/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyte
st-cov-4.0.0-z5nf6n/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch
/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-sky
lake/py-coverage-7.2.6-wuxetk/lib/python3.11/site-packages:/gpfs/b
bp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-
12.3.0-skylake/py-pytest-7.3.2-lrf2u3/lib/python3.11/site-packages
:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst
all_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g/lib/python3.11/si
te-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applic
ations/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv/lib/pytho
n3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn/l
ib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02
-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-
x733hw/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy
-1.11.1-t5tove/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/
apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/
py-mpmath-1.2.1-4fflyi/lib/python3.11/site-packages:/gpfs/bbp.cscs
.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-
skylake/py-packaging-23.1-uqml2t/lib/python3.11/site-packages:/gpf
s/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_g
cc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r/lib/python3.11/site-packa
ges:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m/lib/python3.11
/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_app
lications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid/lib/py
thon3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/s
tage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r
3ehtm/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/
2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-l
ibpython-0.3.1-5dylnc/lib/python3.11/site-packages:/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-s
kylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/site-packages:/g
pfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install
_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v/lib/python3.11/site-packa
ges:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/i
nstall_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk/lib/python3.11/
site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v/lib/pytho
n3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove/l
ib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02
-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-
4fflyi/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-inico
nfig-2.0.0-mvxx6g/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/s
sd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skyla
ke/py-setuptools-68.0.0-p3xbqx/lib/python3.11/site-packages:/gpfs/
bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc
-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n/lib/python3.11/site-pac
kages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications
/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn/lib/python3.11/
site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_appl
ications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv/lib/pyt
hon3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st
age_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml
2t/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps/bsd/202
4-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.
3.2-lrf2u3/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-m
pi4py-3.1.4-x733hw/lib/python3.11/site-packages:/gpfs/bbp.cscs.ch/
ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake
/ninja-1.11.1-nxtlgo/misc:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-0
1/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo/m
isc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J
1336166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db99
79da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-b
uild-sxie3wk/bin/nrnivmodl
5103 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P219873/J1336
166/spack-build/spack-stage-neuron-git.e073aa9242973a8e569db9979da
021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbzwt/spack-build
-sxie3wk/share/nrn/demo/release
5104 cfiles =
>> 5105 "x86_64/corenrn/mod2c/hhderiv.cpp", line 40: catastrophic error: c
annot open source file "Eigen/Core"
5106 #include <Eigen/Core>
5107 ^
5108
5109 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/hhderiv.cpp".
5110 Compilation terminated.
>> 5111 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbz
wt/spack-build-sxie3wk/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/hhderiv.o] Error 2
5112 make[3]: *** Waiting for unfinished jobs....
5113 Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod"
"invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mo
d"
5114
5115 Creating 'x86_64' directory for .o files.
5116
>> 5117 "x86_64/corenrn/mod2c/Aradi_Ca.cpp", line 40: catastrophic error:
cannot open source file "Eigen/Core"
5118 #include <Eigen/Core>
5119 ^
5120
5121 1 catastrophic error detected in the compilation of "x86_64/corenr
n/mod2c/Aradi_Ca.cpp".
5122 Compilation terminated.
>> 5123 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P219873/J1336166/spack-build/spack-stage-neuron-git.e073aa9242973
a8e569db9979da021052107a808_develop-sxie3wkz6wh6ozkv34vpmzp6vnzbbz
wt/spack-build-sxie3wk/share/coreneuron/nrnivmodl_core_makefile:18
3: x86_64/corenrn/build/Aradi_Ca.o] Error 2
5124 make[3]: *** Waiting for unfinished jobs....
5125 [NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <range
parameter read_ion> definition in NMODL_GLOBAL
5126 [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <
parameter extern_neuron_var> de
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