Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/208972 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2864.

build-neuron-nmodl-intel-legacy.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1714669237:resolve_secrets
Resolving secrets
section_end:1714669237:resolve_secrets
section_start:1714669237:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1928344462, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 208972, build ref , job ID 1266268
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1266268_PROD_P2160_CP0_C1
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2160104
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1266268_PROD_P2160_CP0_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --ntasks=2 --jobid=2160104 --cpus-per-task=8 --mem=160G     
section_end:1714669239:prepare_executor
section_start:1714669239:prepare_script
Preparing environment
Using git from spack modules
Running on r1i6n13 via bbpv1.epfl.ch...
section_end:1714669243:prepare_script
section_start:1714669243:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1714669244:get_sources
section_start:1714669244:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=212855 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1714669250:restore_cache
section_start:1714669250:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1266267)...
Runtime platform                                    arch=amd64 os=linux pid=212972 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1266267 responseStatus=200 OK token=glcbt-64
section_end:1714669251:download_artifacts
section_start:1714669251:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972/J1266268_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2160104/ccache
Config file:        /nvme/bbpcihpcproj12/2160104/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu May  2 19:00:57 2024
Local storage:
  Cache size (GB):   0.48 / 0.51 (93.99%)
  Files:            13587
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf

Concretized
--------------------------------
 -   lrddyc7  neuron@git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   v534axo      ^libsonata-report@git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  tuewa3t      ^nmodl@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  l76xnwr      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mfss4bt          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qbhlkgj              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  f6wairf              ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  lxhgsum          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  slwtska          ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qe4yfyl      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  dw56njg      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  quibu6o          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-qe4yfy
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124_develop-tuewa3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e_develop-v534ax
==> Installing neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-lrddyc7xaecergkspckn35554u6ma4wf [49/49]
==> No binary for neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-lrddyc7xaecergkspckn35554u6ma4wf found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    'make' '-j8'

26 errors found in build log:
     2903    WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
             obs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron
             -git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaece
             rgkspckn35554u6ma4wf/spack-build-lrddyc7/bin', compiling default o
             nes only!
     2904    [ 34%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
             voc/xmenu.cpp.o
     2905    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-bu
             ild-lrddyc7/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35
             554u6ma4wf/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7x
             aecergkspckn35554u6ma4wf/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/nrnoc -I/gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/oc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build
             -lrddyc7 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/
             spack-build-lrddyc7/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/nrnoc -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/s
             rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma
             4wf/spack-build-lrddyc7/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
             jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuro
             n-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaec
             ergkspckn35554u6ma4wf/spack-build-lrddyc7/src/parallel -I/gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack
             -build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db27
             19f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/
             src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma
             4wf/spack-build-lrddyc7/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src -I/gpfs/bbp.cscs.
             ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build
             /spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_d
             evelop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/gnu -I/gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/nrn
             mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
             cproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0
             778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn355
             54u6ma4wf/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
             /ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/s
             pack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_dev
             elop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/sparse -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/sp
             arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208
             972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72
             070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/sp
             ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
             hpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011a
             a0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn3
             5554u6ma4wf/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials/ida -I/gpf
             s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/
             spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6392
             4db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/s
             undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6
             ma4wf/spack-build-lrddyc7/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
             ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
             ake/python-3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/ivos -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/s
             rc/ivos -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6
             ma4wf/spack-src/external/eigen -march=skylake -mtune=skylake -fope
             nmp-simd -g -O1 -fp-model precise  -std=c++17 -fPIC -pthread -MD -
             MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/xmenu.cpp.o -MF CMak
             eFiles/nrniv_lib.dir/__/ivoc/xmenu.cpp.o.d -o CMakeFiles/nrniv_lib
             .dir/__/ivoc/xmenu.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-src/src/ivoc/xmenu.cpp
     2906    [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7/share/coreneuron/nrnivmodl_co
             re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6
             ma4wf/spack-build-lrddyc7 MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
             fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software
             /install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e
             730830af1124_develop-tuewa3/bin/nmodl MODS_PATH=x86_64/corenrn/mod
             2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
     2907    make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergk
             spckn35554u6ma4wf/spack-build-lrddyc7/bin'
     2908    make[3]: warning: -j4 forced in submake: resetting jobserver mode.
  >> 2909    make[3]: xcrun: No such file or directory
     2910    Default NMODL flags:
     2911    [ 34%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
             voc/xyview.cpp.o
     2912    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-bu
             ild-lrddyc7/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35
             554u6ma4wf/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7x
             aecergkspckn35554u6ma4wf/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/nrnoc -I/gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/oc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build
             -lrddyc7 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/
             spack-build-lrddyc7/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/nrnoc -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/s
             rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma
             4wf/spack-build-lrddyc7/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
             jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuro
             n-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaec
             ergkspckn35554u6ma4wf/spack-build-lrddyc7/src/parallel -I/gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack
             -build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db27
             19f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/
             src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma
             4wf/spack-build-lrddyc7/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src -I/gpfs/bbp.cscs.
             ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build
             /spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_d
             evelop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/gnu -I/gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/nrn
             mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
             cproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0
             778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn355
             54u6ma4wf/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
             /ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/s
             pack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_dev
             elop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/sparse -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/sp
             arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208
             972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72
             070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/sp
             ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
             hpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011a
             a0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn3
             5554u6ma4wf/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials/ida -I/gpf
             s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/
             spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6392
             4db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/s
             undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6
             ma4wf/spack-build-lrddyc7/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
             ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
             ake/python-3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/ivos -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/s
             rc/ivos -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6
             ma4wf/spack-src/external/eigen -march=skylake -mtune=skylake -fope
             nmp-simd -g -O1 -fp-model precise  -std=c++17 -fPIC -pthread -MD -
             MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/xyview.cpp.o -MF CMa
             keFiles/nrniv_lib.dir/__/ivoc/xyview.cpp.o.d -o CMakeFiles/nrniv_l
             ib.dir/__/ivoc/xyview.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
             bs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-
             git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecer
             gkspckn35554u6ma4wf/spack-src/src/ivoc/xyview.cpp
  >> 2913    diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
             y
     2914    [ 34%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
             voc/field.cpp.o
     2915    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-bu
             ild-lrddyc7/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35
             554u6ma4wf/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7x
             aecergkspckn35554u6ma4wf/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/nrnoc -I/gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/oc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build
             -lrddyc7 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/
             spack-build-lrddyc7/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/nrnoc -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/s
             rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma
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             pckn35554u6ma4wf/spack-src/src/ivoc/field.cpp
     2916    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     2917    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     2918    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     2919    [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
             h cnexp solver

     ...

     3656    INFO:root:RX3D is DISABLED
     3657     => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
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     3658    /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
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     3659    cfiles =
     3660    [ 47%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/oc
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     3661    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
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             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergksp
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             /bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
             2.3.0-skylake/python-3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.
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             268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build
             -lrddyc7/src/ivos -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergksp
             ckn35554u6ma4wf/spack-src/external/eigen -march=skylake -mtune=sky
             lake -fopenmp-simd -g -O1 -fp-model precise  -std=c++17 -pthread -
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             hpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011a
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             5554u6ma4wf/spack-src/src/oc/ockludge.cpp
  >> 3662    Mod files: "./follower.mod"/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
             01/stage_compilers/install_gcc-4.8.5-haswell/binutils-2.41-o6yabj/
             bin/ld: cannot find -l-pthread: No such file or directory
  >> 3663     "./gap.mod"/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compil
             ers/install_gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: cannot 
             find -l-pthread: No such file or directory
     3664     "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"
     3665    
     3666    Creating 'x86_64' directory for .o files.
     3667    
  >> 3668    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
             ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s
             ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu
             ptools.installer and fetch_build_eggs are deprecated.
     3669    !!
     3670    
     3671            **********************************************************
             **********************
     3672            Requirements should be satisfied by a PEP 517 installer.
     3673            If you are using pip, you can try `pip install --use-pep51
             7`.
     3674            **********************************************************
             **********************
     3675    
     3676    !!
     3677      dist.fetch_build_eggs(dist.setup_requires)
  >> 3678    icpx: error: linker command failed with exit code 1 (use -v to see
              invocation)
     3679    WARNING:root:WARNING: The wheel package is not available.
  >> 3680    make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-build-lrddyc7/bin/nrnmech_makefile:133: mech_lib_shared] 
             Error 1
     3681    make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7/test/nrnivmodl/8b700508008973
             34ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/x86_64'
  >> 3682    make[2]: *** [test/CMakeFiles/NRN_TEST_nrnivmodl_8b70050800897334a
             c3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c.dir/build.make:77:
              test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6
             ab2f9c53f6288c/x86_64/special] Error 2
     3683    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7'
  >> 3684    make[1]: *** [CMakeFiles/Makefile2:3326: test/CMakeFiles/NRN_TEST_
             nrnivmodl_8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c
             53f6288c.dir/all] Error 2
     3685    make[1]: *** Waiting for unfinished jobs....
  >> 3686    icpx: error: linker command failed with exit code 1 (use -v to see
              invocation)
  >> 3687    make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-build-lrddyc7/bin/nrnmech_makefile:133: mech_lib_shared] 
             Error 1
     3688    make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7/test/nrnivmodl/fb5fb42ddab2ff
             650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/x86_64'
  >> 3689    make[2]: *** [test/CMakeFiles/NRN_TEST_nrnivmodl_fb5fb42ddab2ff650
             e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51.dir/build.make:77:
              test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad5
             8d4fd93f798b51/x86_64/special] Error 2
     3690    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7'
  >> 3691    make[1]: *** [CMakeFiles/Makefile2:3484: test/CMakeFiles/NRN_TEST_
             nrnivmodl_fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd9
             3f798b51.dir/all] Error 2
     3692    [ 47%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
             ts/iovec.cpp.o
     3693    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-bu
             ild-lrddyc7/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCORENRN_
             BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
             DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/ivoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/s
             rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspck
             n35554u6ma4wf/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7x
             aecergkspckn35554u6ma4wf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7 -I/gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/sr
             c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4w
             f/spack-build-lrddyc7/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
             _jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neur
             on-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xae
             cergkspckn35554u6ma4wf/spack-build-lrddyc7/src/nrnpython -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc
             7/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/
             spack-build-lrddyc7/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/sundials -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc
             7/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn
             35554u6ma4wf/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergk
             spckn35554u6ma4wf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
             _map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-
             neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc
             7xaecergkspckn35554u6ma4wf/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.c
             h/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/
             spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_de
             velop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/nrnpython -I/
             gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J12662
             68/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6
             3924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/sr
             c/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4w
             f/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergksp
             ckn35554u6ma4wf/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
             b_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage
             -neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddy
             c7xaecergkspckn35554u6ma4wf/spack-src/src/sparse13 -I/gpfs/bbp.csc
             s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-bui
             ld/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4
             _develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials -
             I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J126
             6268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7ab
             c63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/
             src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35
             554u6ma4wf/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
             ab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stag
             e-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrdd
             yc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials/shared -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/extern
             al/catch2/src/catch2/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
             pcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.0
             11aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspc
             kn35554u6ma4wf/spack-build-lrddyc7/external/catch2/generated-inclu
             des -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -build-lrddyc7/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps
             /bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-
             3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack
             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/ivos -is
             ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
              -O1 -fp-model precise  -std=c++17 -pthread -MD -MT test/CMakeFile
             s/testneuron.dir/unit_tests/iovec.cpp.o -MF CMakeFiles/testneuron.
             dir/unit_tests/iovec.cpp.o.d -o CMakeFiles/testneuron.dir/unit_tes
             ts/iovec.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
             oj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778
             fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u
             6ma4wf/spack-src/test/unit_tests/iovec.cpp
     3694    MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver
             sion_macros.o
     3695    [ 47%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
             ts/container/container.cpp.o
  >> 3696    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
             gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: cannot find -l-pthr
             ead: No such file or directory
     3697    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-bu
             ild-lrddyc7/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCORENRN_
             BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
             DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/ivoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/s
             rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspck
             n35554u6ma4wf/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7x
             aecergkspckn35554u6ma4wf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7 -I/gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/sr
             c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4w
             f/spack-build-lrddyc7/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
             _jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neur
             on-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xae
             cergkspckn35554u6ma4wf/spack-build-lrddyc7/src/nrnpython -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc
             7/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/
             spack-build-lrddyc7/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/sundials -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc
             7/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn
             35554u6ma4wf/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergk
             spckn35554u6ma4wf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
             _map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-
             neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc
             7xaecergkspckn35554u6ma4wf/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.c
             h/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/
             spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_de
             velop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/nrnpython -I/
             gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J12662
             68/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6
             3924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/sr
             c/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4w
             f/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergksp
             ckn35554u6ma4wf/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
             b_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage
             -neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddy
             c7xaecergkspckn35554u6ma4wf/spack-src/src/sparse13 -I/gpfs/bbp.csc
             s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-bui
             ld/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4
             _develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials -
             I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J126
             6268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7ab
             c63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/
             src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35
             554u6ma4wf/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
             ab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stag
             e-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrdd
             yc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials/shared -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/extern
             al/catch2/src/catch2/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
             pcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.0
             11aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspc
             kn35554u6ma4wf/spack-build-lrddyc7/external/catch2/generated-inclu
             des -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -build-lrddyc7/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps
             /bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-
             3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack
             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/ivos -is
             ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
              -O1 -fp-model precise  -std=c++17 -pthread -MD -MT test/CMakeFile
             s/testneuron.dir/unit_tests/container/container.cpp.o -MF CMakeFil
             es/testneuron.dir/unit_tests/container/container.cpp.o.d -o CMakeF
             iles/testneuron.dir/unit_tests/container/container.cpp.o -c /gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/test/un
             it_tests/container/container.cpp
  >> 3698    icpx: error: linker command failed with exit code 1 (use -v to see
              invocation)
  >> 3699    make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-build-lrddyc7/bin/nrnmech_makefile:133: mech_lib_shared] 
             Error 1
     3700    make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7/test/nrnivmodl/7378b0d1010df9
             fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/x86_64'
  >> 3701    make[2]: *** [test/CMakeFiles/NRN_TEST_nrnivmodl_7378b0d1010df9fb9
             d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453.dir/build.make:78:
              test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff
             794d6831e1b453/x86_64/special] Error 2
     3702    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7'
  >> 3703    make[1]: *** [CMakeFiles/Makefile2:3432: test/CMakeFiles/NRN_TEST_
             nrnivmodl_7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d68
             31e1b453.dir/all] Error 2
     3704    [ 47%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
             ts/container/generic_data_handle.cpp.o
     3705    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-bu
             ild-lrddyc7/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCORENRN_
             BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
             DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/ivoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/s
             rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspck
             n35554u6ma4wf/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7x
             aecergkspckn35554u6ma4wf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7 -I/gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/sr
             c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4w
             f/spack-build-lrddyc7/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
             _jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neur
             on-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xae
             cergkspckn35554u6ma4wf/spack-build-lrddyc7/src/nrnpython -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc
             7/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/
             spack-build-lrddyc7/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/sundials -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc
             7/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn
             35554u6ma4wf/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergk
             spckn35554u6ma4wf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
             _map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-
             neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc
             7xaecergkspckn35554u6ma4wf/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.c
             h/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/
             spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_de
             velop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/nrnpython -I/
             gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J12662
             68/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6
             3924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/sr
             c/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4w
             f/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergksp
             ckn35554u6ma4wf/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
             b_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage
             -neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddy
             c7xaecergkspckn35554u6ma4wf/spack-src/src/sparse13 -I/gpfs/bbp.csc
             s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-bui
             ld/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4
             _develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials -
             I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J126
             6268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7ab
             c63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/
             src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35
             554u6ma4wf/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
             ab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stag
             e-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrdd
             yc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials/shared -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/extern
             al/catch2/src/catch2/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
             pcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.0
             11aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspc
             kn35554u6ma4wf/spack-build-lrddyc7/external/catch2/generated-inclu
             des -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -build-lrddyc7/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps
             /bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-
             3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack
             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/ivos -is
             ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
              -O1 -fp-model precise  -std=c++17 -pthread -MD -MT test/CMakeFile
             s/testneuron.dir/unit_tests/container/generic_data_handle.cpp.o -M
             F CMakeFiles/testneuron.dir/unit_tests/container/generic_data_hand
             le.cpp.o.d -o CMakeFiles/testneuron.dir/unit_tests/container/gener
             ic_data_handle.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn
             35554u6ma4wf/spack-src/test/unit_tests/container/generic_data_hand
             le.cpp
     3706    [ 47%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/mo
             dlreg.cpp.o
     3707    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-bu
             ild-lrddyc7/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35
             554u6ma4wf/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
             obs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron
             -git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaece
             rgkspckn35554u6ma4wf/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
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     3709    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
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             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7'
     3711    [ 47%] Built target nrn-benchmarks
     3712    [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7/share/coreneuron/nrnivmodl_co
             re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6
             ma4wf/spack-build-lrddyc7 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP
             E=STATIC NRN_PRCELLSTATE=0
     3713    make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergk
             spckn35554u6ma4wf/spack-build-lrddyc7/test/nrnivmodl/c448d279dd3b9
             1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0'
     3714    make[3]: warning: -j4 forced in submake: resetting jobserver mode.
  >> 3715    make[3]: xcrun: No such file or directory
     3716    Default NMODL flags:
     3717    [ 47%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
             ts/container/node.cpp.o
     3718    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-bu
             ild-lrddyc7/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCORENRN_
             BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
             DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/ivoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/s
             rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspck
             n35554u6ma4wf/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7x
             aecergkspckn35554u6ma4wf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7 -I/gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/sr
             c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4w
             f/spack-build-lrddyc7/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
             _jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neur
             on-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xae
             cergkspckn35554u6ma4wf/spack-build-lrddyc7/src/nrnpython -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc
             7/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/
             spack-build-lrddyc7/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/sundials -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc
             7/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn
             35554u6ma4wf/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergk
             spckn35554u6ma4wf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
             _map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-
             neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc
             7xaecergkspckn35554u6ma4wf/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.c
             h/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/
             spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_de
             velop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/nrnpython -I/
             gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J12662
             68/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6
             3924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/sr
             c/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4w
             f/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergksp
             ckn35554u6ma4wf/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
             b_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage
             -neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddy
             c7xaecergkspckn35554u6ma4wf/spack-src/src/sparse13 -I/gpfs/bbp.csc
             s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-bui
             ld/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4
             _develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials -
             I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J126
             6268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7ab
             c63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/
             src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35
             554u6ma4wf/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
             ab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stag
             e-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrdd
             yc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials/shared -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/extern
             al/catch2/src/catch2/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
             pcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.0
             11aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspc
             kn35554u6ma4wf/spack-build-lrddyc7/external/catch2/generated-inclu
             des -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -build-lrddyc7/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps
             /bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-
             3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack
             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/ivos -is
             ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
              -O1 -fp-model precise  -std=c++17 -pthread -MD -MT test/CMakeFile
             s/testneuron.dir/unit_tests/container/node.cpp.o -MF CMakeFiles/te
             stneuron.dir/unit_tests/container/node.cpp.o.d -o CMakeFiles/testn
             euron.dir/unit_tests/container/node.cpp.o -c /gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack
             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -lrddyc7xaecergkspckn35554u6ma4wf/spack-src/test/unit_tests/contai
             ner/node.cpp
     3719    [ 47%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
             ts/node_order_optim/permutations.cpp.o
     3720    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-bu
             ild-lrddyc7/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCORENRN_
             BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
             DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/ivoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/s
             rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspck
             n35554u6ma4wf/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7x
             aecergkspckn35554u6ma4wf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7 -I/gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/sr
             c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4w
             f/spack-build-lrddyc7/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
             _jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neur
             on-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xae
             cergkspckn35554u6ma4wf/spack-build-lrddyc7/src/nrnpython -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc
             7/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/
             spack-build-lrddyc7/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/sundials -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc
             7/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn
             35554u6ma4wf/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergk
             spckn35554u6ma4wf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
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             7xaecergkspckn35554u6ma4wf/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.c
             h/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/
             spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_de
             velop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/nrnpython -I/
             gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J12662
             68/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6
             3924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/sr
             c/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4w
             f/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergksp
             ckn35554u6ma4wf/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
             b_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage
             -neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddy
             c7xaecergkspckn35554u6ma4wf/spack-src/src/sparse13 -I/gpfs/bbp.csc
             s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-bui
             ld/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4
             _develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials -
             I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J126
             6268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7ab
             c63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/
             src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35
             554u6ma4wf/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
             ab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stag
             e-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrdd
             yc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials/shared -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/extern
             al/catch2/src/catch2/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
             pcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.0
             11aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspc
             kn35554u6ma4wf/spack-build-lrddyc7/external/catch2/generated-inclu
             des -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -build-lrddyc7/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps
             /bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-
             3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack
             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/ivos -is
             ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
              -O1 -fp-model precise  -std=c++17 -pthread -MD -MT test/CMakeFile
             s/testneuron.dir/unit_tests/node_order_optim/permutations.cpp.o -M
             F CMakeFiles/testneuron.dir/unit_tests/node_order_optim/permutatio
             ns.cpp.o.d -o CMakeFiles/testneuron.dir/unit_tests/node_order_opti
             m/permutations.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn
             35554u6ma4wf/spack-src/test/unit_tests/node_order_optim/permutatio
             ns.cpp
  >> 3721    diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
             y
     3722    [ 47%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
             ts/utils/enumerate.cpp.o
     3723    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-bu
             ild-lrddyc7/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCORENRN_
             BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
             DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/ivoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/s
             rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspck
             n35554u6ma4wf/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7x
             aecergkspckn35554u6ma4wf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7 -I/gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/sr
             c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4w
             f/spack-build-lrddyc7/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
             _jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neur
             on-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xae
             cergkspckn35554u6ma4wf/spack-build-lrddyc7/src/nrnpython -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc
             7/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/
             spack-build-lrddyc7/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/sundials -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc
             7/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn
             35554u6ma4wf/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergk
             spckn35554u6ma4wf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
             _map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-
             neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc
             7xaecergkspckn35554u6ma4wf/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.c
             h/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/
             spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_de
             velop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/nrnpython -I/
             gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J12662
             68/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6
             3924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/sr
             c/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4w
             f/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergksp
             ckn35554u6ma4wf/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
             b_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage
             -neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddy
             c7xaecergkspckn35554u6ma4wf/spack-src/src/sparse13 -I/gpfs/bbp.csc
             s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-bui
             ld/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4
             _develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials -
             I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J126
             6268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7ab
             c63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/
             src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35
             554u6ma4wf/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
             ab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stag
             e-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrdd
             yc7xaecergkspckn35554u6ma4wf/spack-src/src/sundials/shared -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/extern
             al/catch2/src/catch2/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
             pcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.0
             11aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspc
             kn35554u6ma4wf/spack-build-lrddyc7/external/catch2/generated-inclu
             des -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -build-lrddyc7/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps
             /bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-
             3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xa
             ecergkspckn35554u6ma4wf/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack
             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -lrddyc7xaecergkspckn35554u6ma4wf/spack-build-lrddyc7/src/ivos -is
             ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack
             -src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
              -O1 -fp-model precise  -std=c++17 -pthread -MD -MT test/CMakeFile
             s/testneuron.dir/unit_tests/utils/enumerate.cpp.o -MF CMakeFiles/t
             estneuron.dir/unit_tests/utils/enumerate.cpp.o.d -o CMakeFiles/tes
             tneuron.dir/unit_tests/utils/enumerate.cpp.o -c /gpfs/bbp.cscs.ch/
             ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/sp
             ack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_deve
             lop-lrddyc7xaecergkspckn35554u6ma4wf/spack-src/test/unit_tests/uti
             ls/enumerate.cpp
     3724    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     3725    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     3726    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     3727    [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
             h cnexp solver

     ...

     3953    Thread Safe
     3954    Thread Safe
     3955     -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-build-lrddyc7/test/nrnivmodl/c448d279dd3b91940d228c42e4a7
             c280bafe100b4e840f9c938be979cceb8fe0/x86_64/version_macros.cpp
     3956     -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-build-lrddyc7/test/nrnivmodl/c448d279dd3b91940d228c42e4a7
             c280bafe100b4e840f9c938be979cceb8fe0/x86_64/gap.cpp
     3957     -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-build-lrddyc7/test/nrnivmodl/c448d279dd3b91940d228c42e4a7
             c280bafe100b4e840f9c938be979cceb8fe0/x86_64/name_clashes.cpp
     3958     => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7/test/nrnivmodl/c448d279dd3b91
             940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64/./libnrn
             mech.so"
  >> 3959    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
             gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: cannot find -l-pthr
             ead: No such file or directory
  >> 3960    icpx: error: linker command failed with exit code 1 (use -v to see
              invocation)
  >> 3961    make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4
             wf/spack-build-lrddyc7/bin/nrnmech_makefile:133: mech_lib_shared] 
             Error 1
     3962    make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7/test/nrnivmodl/c448d279dd3b91
             940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64'
  >> 3963    make[2]: *** [test/CMakeFiles/NRN_TEST_nrnivmodl_c448d279dd3b91940
             d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0.dir/build.make:94:
              test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c93
             8be979cceb8fe0/x86_64/special] Error 2
     3964    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7'
  >> 3965    make[1]: *** [CMakeFiles/Makefile2:3354: test/CMakeFiles/NRN_TEST_
             nrnivmodl_c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979
             cceb8fe0.dir/all] Error 2
     3966    make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergks
             pckn35554u6ma4wf/spack-build-lrddyc7'
  >> 3967    make: *** [Makefile:169: all] Error 2

See build log for details:
  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266268/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-lrddyc7xaecergkspckn35554u6ma4wf/spack-build-out.txt

$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i6n13: task 0: Exited with exit code 1
section_end:1714669661:step_script
section_start:1714669661:upload_artifacts_on_failure
Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=222421 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1266268 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=222464 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1266268 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=222501 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1266268 responseStatus=201 Created token=glcbt-64
section_end:1714669663:upload_artifacts_on_failure
section_start:1714669663:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1714669664:cleanup_file_variables
ERROR: Job failed: exit status 1


build-neuron-nmodl-intel-shared.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1714669238:resolve_secrets
Resolving secrets
section_end:1714669238:resolve_secrets
section_start:1714669238:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor753697462, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 208972, build ref , job ID 1266269
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1266269_PROD_P2160_CP1_C2
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2160105
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1266269_PROD_P2160_CP1_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --ntasks=2 --jobid=2160105 --cpus-per-task=8 --mem=160G     
section_end:1714669239:prepare_executor
section_start:1714669239:prepare_script
Preparing environment
Using git from spack modules
Running on r1i7n31 via bbpv1.epfl.ch...
section_end:1714669243:prepare_script
section_start:1714669243:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1714669244:get_sources
section_start:1714669244:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=234568 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1714669250:restore_cache
section_start:1714669250:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1266267)...
Runtime platform                                    arch=amd64 os=linux pid=234677 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1266267 responseStatus=200 OK token=glcbt-64
section_end:1714669251:download_artifacts
section_start:1714669251:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972/J1266269_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2160105/ccache
Config file:        /nvme/bbpcihpcproj12/2160105/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu May  2 19:00:56 2024
Local storage:
  Cache size (GB):   0.45 / 0.51 (88.52%)
  Files:            12633
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf

Concretized
--------------------------------
 -   5eabhcd  neuron@git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   v534axo      ^libsonata-report@git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  tuewa3t      ^nmodl@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  l76xnwr      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mfss4bt          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qbhlkgj              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  f6wairf              ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  lxhgsum          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  slwtska          ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qe4yfyl      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  dw56njg      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  quibu6o          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
==> Installing libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop-v534axoyfq2ctrtels7v2u2s37bmj5uq [44/49]
==> No binary for libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop-v534axoyfq2ctrtels7v2u2s37bmj5uq found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop-v534axoyfq2ctrtels7v2u2s37bmj5uq
  Stage: 2.43s.  Cmake: 5.14s.  Build: 1.54s.  Install: 0.11s.  Post-install: 0.10s.  Total: 9.52s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e_develop-v534ax
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-qe4yfy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124_develop-tuewa3
==> Installing neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-5eabhcdkc75uhw7f5lj6noopyofty7qw [49/49]
==> No binary for neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-5eabhcdkc75uhw7f5lj6noopyofty7qw found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    'make' '-j8'

26 errors found in build log:
     2890    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-bu
             ild-5eabhcd/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6no
             opyofty7qw/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdk
             c75uhw7f5lj6noopyofty7qw/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrnoc -I/gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/oc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build
             -5eabhcd -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/
             spack-build-5eabhcd/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
             75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/nrnoc -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/s
             rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty
             7qw/spack-build-5eabhcd/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
             jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuro
             n-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75
             uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/parallel -I/gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack
             -build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db27
             19f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/
             src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty
             7qw/spack-build-5eabhcd/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src -I/gpfs/bbp.cscs.
             ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build
             /spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_d
             evelop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/gnu -I/gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrn
             mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack
             -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
             cproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0
             778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noo
             pyofty7qw/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
             75uhw7f5lj6noopyofty7qw/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
             /ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/s
             pack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_dev
             elop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sparse -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sp
             arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208
             972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72
             070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/sp
             ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
             hpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011a
             a0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6n
             oopyofty7qw/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sundials/ida -I/gpf
             s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/
             spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6392
             4db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/s
             undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyof
             ty7qw/spack-build-5eabhcd/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
             ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
             ake/python-3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/ivos -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/s
             rc/ivos -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyof
             ty7qw/spack-src/external/eigen -march=skylake -mtune=skylake -fope
             nmp-simd -g -O1 -fp-model precise  -std=c++17 -fPIC -pthread -MD -
             MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocpointer.cpp.o -MF 
             CMakeFiles/nrniv_lib.dir/__/ivoc/ocpointer.cpp.o.d -o CMakeFiles/n
             rniv_lib.dir/__/ivoc/ocpointer.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitl
             ab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stag
             e-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eab
             hcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/ivoc/ocpointer.cpp
     2891    [ 35%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
             voc/ocptrvector.cpp.o
     2892    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-bu
             ild-5eabhcd/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6no
             opyofty7qw/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdk
             c75uhw7f5lj6noopyofty7qw/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrnoc -I/gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/oc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build
             -5eabhcd -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/
             spack-build-5eabhcd/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
             75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/nrnoc -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/s
             rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty
             7qw/spack-build-5eabhcd/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
             jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuro
             n-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75
             uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/parallel -I/gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack
             -build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db27
             19f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/
             src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty
             7qw/spack-build-5eabhcd/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src -I/gpfs/bbp.cscs.
             ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build
             /spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_d
             evelop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/gnu -I/gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrn
             mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack
             -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
             cproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0
             778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noo
             pyofty7qw/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
             75uhw7f5lj6noopyofty7qw/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
             /ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/s
             pack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_dev
             elop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sparse -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sp
             arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208
             972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72
             070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/sp
             ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
             hpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011a
             a0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6n
             oopyofty7qw/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sundials/ida -I/gpf
             s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/
             spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6392
             4db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/s
             undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyof
             ty7qw/spack-build-5eabhcd/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
             ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
             ake/python-3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/ivos -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/s
             rc/ivos -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyof
             ty7qw/spack-src/external/eigen -march=skylake -mtune=skylake -fope
             nmp-simd -g -O1 -fp-model precise  -std=c++17 -fPIC -pthread -MD -
             MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocptrvector.cpp.o -M
             F CMakeFiles/nrniv_lib.dir/__/ivoc/ocptrvector.cpp.o.d -o CMakeFil
             es/nrniv_lib.dir/__/ivoc/ocptrvector.cpp.o -c /gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/ivoc/ocptrvector.
             cpp
     2893    [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f
             5lj6noopyofty7qw/spack-build-5eabhcd/share/coreneuron/nrnivmodl_co
             re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyof
             ty7qw/spack-build-5eabhcd MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
             fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software
             /install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e
             730830af1124_develop-tuewa3/bin/nmodl MODS_PATH=x86_64/corenrn/mod
             2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
     2894    make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7
             f5lj6noopyofty7qw/spack-build-5eabhcd/bin'
     2895    make[3]: warning: -j4 forced in submake: resetting jobserver mode.
  >> 2896    make[3]: xcrun: No such file or directory
     2897    Default NMODL flags:
  >> 2898    diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
             y
     2899    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     2900    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     2901    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     2902    [ 35%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
             voc/octimer.cpp.o
     2903    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-bu
             ild-5eabhcd/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6no
             opyofty7qw/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdk
             c75uhw7f5lj6noopyofty7qw/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spa
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             j12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778f
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     2904    [ 35%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
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     ...

     3663     => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
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     3665    INFO:root:Extension common compile flags defaultdict(<class 'list'
             >, {'library_dirs': ['/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa
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     3666    INFO:root:RX3D is DISABLED
     3667    Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./un
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     3668    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
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             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/ivos -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build
             -5eabhcd/src/ivos -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5
             lj6noopyofty7qw/spack-src/external/eigen -march=skylake -mtune=sky
             lake -fopenmp-simd -g -O1 -fp-model precise  -std=c++17 -pthread -
             MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o -MF CMa
             keFiles/nrniv.dir/__/oc/ockludge.cpp.o.d -o CMakeFiles/nrniv.dir/_
             _/oc/ockludge.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
             hpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011a
             a0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6n
             oopyofty7qw/spack-src/src/oc/ockludge.cpp
  >> 3669    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
             gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: cannot find -l-pthr
             ead: No such file or directory
     3670     "./version_macros.mod"
     3671    
     3672    Creating 'x86_64' directory for .o files.
     3673    
  >> 3674    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
             gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: cannot find -l-pthr
             ead: No such file or directory
  >> 3675    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta
             ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s
             ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu
             ptools.installer and fetch_build_eggs are deprecated.
     3676    !!
     3677    
     3678            **********************************************************
             **********************
     3679            Requirements should be satisfied by a PEP 517 installer.
     3680            If you are using pip, you can try `pip install --use-pep51
             7`.
     3681            **********************************************************
             **********************
     3682    
     3683    !!
     3684      dist.fetch_build_eggs(dist.setup_requires)
     3685    WARNING:root:WARNING: The wheel package is not available.
  >> 3686    icpx: error: linker command failed with exit code 1 (use -v to see
              invocation)
  >> 3687    make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-build-5eabhcd/bin/nrnmech_makefile:133: mech_lib_shared] 
             Error 1
     3688    make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f
             5lj6noopyofty7qw/spack-build-5eabhcd/test/nrnivmodl/fb5fb42ddab2ff
             650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/x86_64'
  >> 3689    make[2]: *** [test/CMakeFiles/NRN_TEST_nrnivmodl_fb5fb42ddab2ff650
             e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51.dir/build.make:77:
              test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad5
             8d4fd93f798b51/x86_64/special] Error 2
     3690    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f
             5lj6noopyofty7qw/spack-build-5eabhcd'
  >> 3691    make[1]: *** [CMakeFiles/Makefile2:3492: test/CMakeFiles/NRN_TEST_
             nrnivmodl_fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd9
             3f798b51.dir/all] Error 2
     3692    make[1]: *** Waiting for unfinished jobs....
  >> 3693    icpx: error: linker command failed with exit code 1 (use -v to see
              invocation)
  >> 3694    make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-build-5eabhcd/bin/nrnmech_makefile:133: mech_lib_shared] 
             Error 1
     3695    make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f
             5lj6noopyofty7qw/spack-build-5eabhcd/test/nrnivmodl/8b700508008973
             34ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/x86_64'
  >> 3696    make[2]: *** [test/CMakeFiles/NRN_TEST_nrnivmodl_8b70050800897334a
             c3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c.dir/build.make:77:
              test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6
             ab2f9c53f6288c/x86_64/special] Error 2
     3697    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f
             5lj6noopyofty7qw/spack-build-5eabhcd'
  >> 3698    make[1]: *** [CMakeFiles/Makefile2:3334: test/CMakeFiles/NRN_TEST_
             nrnivmodl_8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c
             53f6288c.dir/all] Error 2
     3699    [ 47%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/mo
             dlreg.cpp.o
     3700    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-bu
             ild-5eabhcd/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6no
             opyofty7qw/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
             obs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron
             -git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75u
             hw7f5lj6noopyofty7qw/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrniv -I/gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack
             -build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db27
             19f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrnoc 
             -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J12
             66269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7a
             bc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src
             /src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P20
             8972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e7
             2070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/s
             pack-build-5eabhcd -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
             cproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0
             778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noo
             pyofty7qw/spack-build-5eabhcd/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack
             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/nrnoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build
             -5eabhcd/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj
             6noopyofty7qw/spack-build-5eabhcd/src/oc -I/gpfs/bbp.cscs.ch/ssd/g
             itlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-s
             tage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5
             eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/parallel -
             I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J126
             6269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7ab
             c63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-buil
             d-5eabhcd/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj
             6noopyofty7qw/spack-build-5eabhcd/src/sundials/shared -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/gn
             u -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J
             1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe
             7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-s
             rc/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
             12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fb
             dde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyoft
             y7qw/spack-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
             bs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-
             git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uh
             w7f5lj6noopyofty7qw/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack
             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/scopmath -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/spar
             se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/
             J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070f
             e7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-
             src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
             roj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa077
             8fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopy
             ofty7qw/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
             jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuro
             n-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75
             uhw7f5lj6noopyofty7qw/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs
             cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-bu
             ild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f
             4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sundials/
             ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack
             -src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5
             lj6noopyofty7qw/spack-build-5eabhcd/src/nrniv/oc_generated -I/gpfs
             /bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
             2.3.0-skylake/python-3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/ivos -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build
             -5eabhcd/src/ivos -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5
             lj6noopyofty7qw/spack-src/external/eigen -march=skylake -mtune=sky
             lake -fopenmp-simd -g -O1 -fp-model precise  -std=c++17 -pthread -
             MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/modlreg.cpp.o -MF CMak
             eFiles/nrniv.dir/__/oc/modlreg.cpp.o.d -o CMakeFiles/nrniv.dir/__/
             oc/modlreg.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa07
             78fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noop
             yofty7qw/spack-src/src/oc/modlreg.cpp
  >> 3701    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
             gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: cannot find -l-pthr
             ead: No such file or directory
     3702    MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver
             sion_macros.o
     3703    [ 47%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
             ts/iovec.cpp.o
     3704    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-bu
             ild-5eabhcd/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCORENRN_
             BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
             DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/ivoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/s
             rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj
             6noopyofty7qw/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdk
             c75uhw7f5lj6noopyofty7qw/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd -I/gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/sr
             c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde
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             w/spack-build-5eabhcd/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
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             08972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/
             spack-build-5eabhcd/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
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             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spa
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             d/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6
             noopyofty7qw/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7
             f5lj6noopyofty7qw/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
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             neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhc
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             h/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/
             spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_de
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             gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J12662
             69/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6
             3924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/sr
             c/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7q
             w/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5
             lj6noopyofty7qw/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
             b_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage
             -neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabh
             cdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sparse13 -I/gpfs/bbp.csc
             s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-bui
             ld/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4
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             6269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7ab
             c63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/
             src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6no
             opyofty7qw/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
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             pcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.0
             11aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5l
             j6noopyofty7qw/spack-build-5eabhcd/external/catch2/generated-inclu
             des -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack
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             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
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             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/ivos -is
             ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack
             -src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
              -O1 -fp-model precise  -std=c++17 -pthread -MD -MT test/CMakeFile
             s/testneuron.dir/unit_tests/iovec.cpp.o -MF CMakeFiles/testneuron.
             dir/unit_tests/iovec.cpp.o.d -o CMakeFiles/testneuron.dir/unit_tes
             ts/iovec.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
             oj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778
             fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyo
             fty7qw/spack-src/test/unit_tests/iovec.cpp
  >> 3705    icpx: error: linker command failed with exit code 1 (use -v to see
              invocation)
  >> 3706    make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-build-5eabhcd/bin/nrnmech_makefile:133: mech_lib_shared] 
             Error 1
     3707    make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f
             5lj6noopyofty7qw/spack-build-5eabhcd/test/nrnivmodl/7378b0d1010df9
             fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/x86_64'
  >> 3708    make[2]: *** [test/CMakeFiles/NRN_TEST_nrnivmodl_7378b0d1010df9fb9
             d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453.dir/build.make:78:
              test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff
             794d6831e1b453/x86_64/special] Error 2
     3709    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f
             5lj6noopyofty7qw/spack-build-5eabhcd'
  >> 3710    make[1]: *** [CMakeFiles/Makefile2:3440: test/CMakeFiles/NRN_TEST_
             nrnivmodl_7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d68
             31e1b453.dir/all] Error 2
     3711    [ 47%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
             ts/container/container.cpp.o
     3712    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-bu
             ild-5eabhcd/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCORENRN_
             BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
             DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-
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             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/ivoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/s
             rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.01
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             6noopyofty7qw/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
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             P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7q
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             75uhw7f5lj6noopyofty7qw/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack
             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/ivos -is
             ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack
             -src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
              -O1 -fp-model precise  -std=c++17 -pthread -MD -MT test/CMakeFile
             s/testneuron.dir/unit_tests/container/container.cpp.o -MF CMakeFil
             es/testneuron.dir/unit_tests/container/container.cpp.o.d -o CMakeF
             iles/testneuron.dir/unit_tests/container/container.cpp.o -c /gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/test/un
             it_tests/container/container.cpp
     3713    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f
             5lj6noopyofty7qw/spack-build-5eabhcd'
     3714    [ 47%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
             ts/container/generic_data_handle.cpp.o
     3715    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-bu
             ild-5eabhcd/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCORENRN_
             BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
             DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/ivoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/s
             rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj
             6noopyofty7qw/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdk
             c75uhw7f5lj6noopyofty7qw/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd -I/gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/sr
             c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7q
             w/spack-build-5eabhcd/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
             _jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neur
             on-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc7
             5uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/nrnpython -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhc
             d/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/
             spack-build-5eabhcd/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
             75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/sundials -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhc
             d/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6
             noopyofty7qw/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7
             f5lj6noopyofty7qw/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
             _map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-
             neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhc
             dkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.c
             h/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/
             spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_de
             velop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrnpython -I/
             gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J12662
             69/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6
             3924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/sr
             c/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7q
             w/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5
             lj6noopyofty7qw/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
             b_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage
             -neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabh
             cdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sparse13 -I/gpfs/bbp.csc
             s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-bui
             ld/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4
             _develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sundials -
             I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J126
             6269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7ab
             c63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/
             src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6no
             opyofty7qw/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
             ab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stag
             e-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eab
             hcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sundials/shared -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/extern
             al/catch2/src/catch2/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
             pcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.0
             11aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5l
             j6noopyofty7qw/spack-build-5eabhcd/external/catch2/generated-inclu
             des -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack
             -build-5eabhcd/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps
             /bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-
             3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
             75uhw7f5lj6noopyofty7qw/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack
             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/ivos -is
             ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack
             -src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
              -O1 -fp-model precise  -std=c++17 -pthread -MD -MT test/CMakeFile
             s/testneuron.dir/unit_tests/container/generic_data_handle.cpp.o -M
             F CMakeFiles/testneuron.dir/unit_tests/container/generic_data_hand
             le.cpp.o.d -o CMakeFiles/testneuron.dir/unit_tests/container/gener
             ic_data_handle.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6
             noopyofty7qw/spack-src/test/unit_tests/container/generic_data_hand
             le.cpp
     3716    [ 47%] Built target nrn-benchmarks

     ...

     3720    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-bu
             ild-5eabhcd/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCORENRN_
             BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
             DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/ivoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/s
             rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj
             6noopyofty7qw/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdk
             c75uhw7f5lj6noopyofty7qw/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd -I/gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/sr
             c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7q
             w/spack-build-5eabhcd/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
             _jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neur
             on-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc7
             5uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/nrnpython -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhc
             d/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/
             spack-build-5eabhcd/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
             75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/sundials -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhc
             d/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6
             noopyofty7qw/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7
             f5lj6noopyofty7qw/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
             _map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-
             neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhc
             dkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.c
             h/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/
             spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_de
             velop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrnpython -I/
             gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J12662
             69/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6
             3924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/sr
             c/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7q
             w/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5
             lj6noopyofty7qw/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
             b_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage
             -neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabh
             cdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sparse13 -I/gpfs/bbp.csc
             s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-bui
             ld/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4
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  >> 3726    make[3]: xcrun: No such file or directory
     3727    Default NMODL flags:
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             08972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
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             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
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             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
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             d/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6
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             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7
             f5lj6noopyofty7qw/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
             _map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-
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             ld/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4
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             pcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa
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             pcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.0
             11aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5l
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             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
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             /bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-
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             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
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             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack
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             ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
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             s/testneuron.dir/unit_tests/utils/enumerate.cpp.o -MF CMakeFiles/t
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  >> 3730    diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
             y
     3731    [ 47%] Building CXX object test/CMakeFiles/testneuron.dir/unit_tes
             ts/oc/hoc_interpreter.cpp.o
     3732    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
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             DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/ivoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
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             63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/s
             rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj
             6noopyofty7qw/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdk
             c75uhw7f5lj6noopyofty7qw/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
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             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd -I/gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/sr
             c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde
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             w/spack-build-5eabhcd/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
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             on-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc7
             5uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/nrnpython -I/gpfs/b
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             d/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
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             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
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             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7
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             spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_de
             velop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrnpython -I/
             gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J12662
             69/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6
             3924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/sr
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             P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7q
             w/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5
             lj6noopyofty7qw/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
             b_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage
             -neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabh
             cdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sparse13 -I/gpfs/bbp.csc
             s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-bui
             ld/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4
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             I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J126
             6269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7ab
             c63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/
             src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6no
             opyofty7qw/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
             ab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stag
             e-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eab
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             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
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             al/catch2/src/catch2/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
             pcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.0
             11aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5l
             j6noopyofty7qw/spack-build-5eabhcd/external/catch2/generated-inclu
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             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack
             -build-5eabhcd/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps
             /bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-
             3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
             75uhw7f5lj6noopyofty7qw/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack
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             -5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/ivos -is
             ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack
             -src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
              -O1 -fp-model precise  -std=c++17 -pthread -MD -MT test/CMakeFile
             s/testneuron.dir/unit_tests/oc/hoc_interpreter.cpp.o -MF CMakeFile
             s/testneuron.dir/unit_tests/oc/hoc_interpreter.cpp.o.d -o CMakeFil
             es/testneuron.dir/unit_tests/oc/hoc_interpreter.cpp.o -c /gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack
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             19f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/test/unit_
             tests/oc/hoc_interpreter.cpp
     3733    [ 47%] Building CXX object test/CMakeFiles/testneuron.dir/cover/un
             it_tests/cover.cpp.o
     3734    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-bu
             ild-5eabhcd/test && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266265/spack/lib/spack/env/oneapi/icpx -DCORENRN_
             BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -
             DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/ivoc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/s
             rc/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.01
             1aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj
             6noopyofty7qw/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdk
             c75uhw7f5lj6noopyofty7qw/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd -I/gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/sr
             c/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7q
             w/spack-build-5eabhcd/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
             _jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neur
             on-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc7
             5uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/nrnpython -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhc
             d/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/
             spack-build-5eabhcd/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
             75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/sundials -I/gpfs/b
             bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spa
             ck-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db
             2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhc
             d/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
             ihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011
             aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6
             noopyofty7qw/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7
             f5lj6noopyofty7qw/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab
             _map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-
             neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhc
             dkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.c
             h/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/
             spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_de
             velop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/nrnpython -I/
             gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J12662
             69/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6
             3924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/sr
             c/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
             P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde
             2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7q
             w/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
             bpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.
             011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5
             lj6noopyofty7qw/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitla
             b_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage
             -neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabh
             cdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sparse13 -I/gpfs/bbp.csc
             s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-bui
             ld/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4
             _develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sundials -
             I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J126
             6269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7ab
             c63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/
             src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6no
             opyofty7qw/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitl
             ab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stag
             e-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eab
             hcdkc75uhw7f5lj6noopyofty7qw/spack-src/src/sundials/shared -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-src/extern
             al/catch2/src/catch2/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
             pcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.0
             11aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5l
             j6noopyofty7qw/spack-build-5eabhcd/external/catch2/generated-inclu
             des -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack
             -build-5eabhcd/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps
             /bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-
             3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc
             75uhw7f5lj6noopyofty7qw/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd
             /gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack
             -stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop
             -5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-5eabhcd/src/ivos -is
             ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack
             -src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
              -O1 -fp-model precise  -std=c++17 -pthread -MD -MT test/CMakeFile
             s/testneuron.dir/cover/unit_tests/cover.cpp.o -MF CMakeFiles/testn
             euron.dir/cover/unit_tests/cover.cpp.o.d -o CMakeFiles/testneuron.
             dir/cover/unit_tests/cover.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdk
             c75uhw7f5lj6noopyofty7qw/spack-src/test/cover/unit_tests/cover.cpp
     3735    [ 47%] Linking CXX executable ../../bin/nrniv
     3736    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-bu
             ild-5eabhcd/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
             /stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
             n/cmake -E cmake_link_script CMakeFiles/nrniv.dir/link.txt --verbo
             se=1

     ...

     3960    Thread Safe
     3961     -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-build-5eabhcd/test/nrnivmodl/c448d279dd3b91940d228c42e4a7
             c280bafe100b4e840f9c938be979cceb8fe0/x86_64/gap.cpp
     3962     -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-build-5eabhcd/test/nrnivmodl/c448d279dd3b91940d228c42e4a7
             c280bafe100b4e840f9c938be979cceb8fe0/x86_64/name_clashes.cpp
     3963     -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-build-5eabhcd/test/nrnivmodl/c448d279dd3b91940d228c42e4a7
             c280bafe100b4e840f9c938be979cceb8fe0/x86_64/unitstest.cpp
     3964     -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-build-5eabhcd/test/nrnivmodl/c448d279dd3b91940d228c42e4a7
             c280bafe100b4e840f9c938be979cceb8fe0/x86_64/version_macros.cpp
     3965     => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f
             5lj6noopyofty7qw/spack-build-5eabhcd/test/nrnivmodl/c448d279dd3b91
             940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64/./libnrn
             mech.so"
  >> 3966    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
             gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: cannot find -l-pthr
             ead: No such file or directory
  >> 3967    icpx: error: linker command failed with exit code 1 (use -v to see
              invocation)
  >> 3968    make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7
             qw/spack-build-5eabhcd/bin/nrnmech_makefile:133: mech_lib_shared] 
             Error 1
     3969    make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f
             5lj6noopyofty7qw/spack-build-5eabhcd/test/nrnivmodl/c448d279dd3b91
             940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64'
  >> 3970    make[2]: *** [test/CMakeFiles/NRN_TEST_nrnivmodl_c448d279dd3b91940
             d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0.dir/build.make:94:
              test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c93
             8be979cceb8fe0/x86_64/special] Error 2
     3971    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f
             5lj6noopyofty7qw/spack-build-5eabhcd'
  >> 3972    make[1]: *** [CMakeFiles/Makefile2:3362: test/CMakeFiles/NRN_TEST_
             nrnivmodl_c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979
             cceb8fe0.dir/all] Error 2
     3973    make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f
             5lj6noopyofty7qw/spack-build-5eabhcd'
  >> 3974    make: *** [Makefile:169: all] Error 2

See build log for details:
  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266269/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-5eabhcdkc75uhw7f5lj6noopyofty7qw/spack-build-out.txt

$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i7n31: task 0: Exited with exit code 1
section_end:1714669660:step_script
section_start:1714669660:upload_artifacts_on_failure
Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=244333 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1266269 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=244372 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1266269 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=244412 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1266269 responseStatus=201 Created token=glcbt-64
section_end:1714669662:upload_artifacts_on_failure
section_start:1714669662:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1714669663:cleanup_file_variables
ERROR: Job failed: exit status 1


build-neuron-nmodl-nvhpc-acc-legacy.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1714669238:resolve_secrets
Resolving secrets
section_end:1714669238:resolve_secrets
section_start:1714669238:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor482981254, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 208972, build ref , job ID 1266270
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1266270_PROD_P2160_CP2_C3
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2160106
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1266270_PROD_P2160_CP2_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --ntasks=2 --jobid=2160106 --cpus-per-task=8 --mem=160G     
section_end:1714669242:prepare_executor
section_start:1714669242:prepare_script
Preparing environment
Using git from spack modules
Running on r1i7n30 via bbpv1.epfl.ch...
section_end:1714669247:prepare_script
section_start:1714669247:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1714669248:get_sources
section_start:1714669248:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=295408 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1714669254:restore_cache
section_start:1714669254:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1266267)...
Runtime platform                                    arch=amd64 os=linux pid=295538 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1266267 responseStatus=200 OK token=glcbt-64
section_end:1714669255:download_artifacts
section_start:1714669255:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972/J1266270_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2160106/ccache
Config file:        /nvme/bbpcihpcproj12/2160106/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu May  2 19:01:00 2024
Local storage:
  Cache size (GB):   0.46 / 0.51 (89.36%)
  Files:            13583
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf

Concretized
--------------------------------
 -   j2dudmr  neuron@git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   2vmdhyp      ^libsonata-report@git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  tuewa3t      ^nmodl@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  l76xnwr      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mfss4bt          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qbhlkgj              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  f6wairf              ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  lxhgsum          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  slwtska          ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qe4yfyl      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  dw56njg      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  quibu6o          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124_develop-tuewa3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-qe4yfy
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_nvhpc-23.1-skylake/libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e_develop-2vmdhy
==> Installing neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4 [50/50]
==> No binary for neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4 found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    'make' '-j8'

7 errors found in build log:
     2952    [ 30%] Running nrnivmodl-core with internal mod files
     2953    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-bu
             ild-j2dudmr/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
             _externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
             e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa07
             78fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2od
             vuh67lt4/spack-build-j2dudmr/bin/nrnivmodl-core -b STATIC -m /gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/i
             nstall_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e73
             0830af1124_develop-tuewa3/bin/nmodl -n internal -p 4 .
     2954    WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
             obs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuron
             -git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7u
             wlu34qzqj2odvuh67lt4/spack-build-j2dudmr/bin', compiling default o
             nes only!
     2955    [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu3
             4qzqj2odvuh67lt4/spack-build-j2dudmr/share/coreneuron/nrnivmodl_co
             re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh
             67lt4/spack-build-j2dudmr MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
             fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software
             /install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e
             730830af1124_develop-tuewa3/bin/nmodl MODS_PATH=x86_64/corenrn/mod
             2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
     2956    make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu
             34qzqj2odvuh67lt4/spack-build-j2dudmr/bin'
     2957    make[3]: warning: -j4 forced in submake: resetting jobserver mode.
  >> 2958    make[3]: xcrun: No such file or directory
     2959    Default NMODL flags:
  >> 2960    diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
             y
     2961    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     2962    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     2963    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     2964    [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
             h cnexp solver
     2965    make  -f src/coreneuron/CMakeFiles/coreneuron-for-tests.dir/build.
             make src/coreneuron/CMakeFiles/coreneuron-for-tests.dir/depend
     2966    make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu
             34qzqj2odvuh67lt4/spack-build-j2dudmr'

     ...

     3007    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-bu
             ild-j2dudmr/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/nvhpc/nvc++ -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2
             odvuh67lt4/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrn
             pr7uwlu34qzqj2odvuh67lt4/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/nrnoc -I/gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/oc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build
             -j2dudmr -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/
             spack-build-j2dudmr/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnp
             r7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/src/nrnoc -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/s
             rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67
             lt4/spack-build-j2dudmr/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
             jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuro
             n-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7
             uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/src/parallel -I/gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack
             -build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db27
             19f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/
             src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67
             lt4/spack-build-j2dudmr/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src -I/gpfs/bbp.cscs.
             ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build
             /spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_d
             evelop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/gnu -I/gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/nrn
             mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack
             -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
             cproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0
             778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2o
             dvuh67lt4/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnp
             r7uwlu34qzqj2odvuh67lt4/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
             /ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/s
             pack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_dev
             elop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/sparse -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/sp
             arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208
             972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72
             070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/sp
             ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
             hpcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011a
             a0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj
             2odvuh67lt4/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/sundials/ida -I/gpf
             s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/
             spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6392
             4db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/s
             undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh
             67lt4/spack-build-j2dudmr/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
             ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
             ake/python-3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ss
             d/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/h
             pe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_
             map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-n
             euron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmr
             npr7uwlu34qzqj2odvuh67lt4/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/src/ivos -
             isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2089
             72/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e720
             70fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spa
             ck-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-pointer  
             --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,541,550
             ,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_lib.di
             r/__/ivoc/rect.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivoc/rect.cpp
             .o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/rect.cpp.o -c /gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/ivoc/rec
             t.cpp
     3008    [ 31%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
             voc/rubband.cpp.o
     3009    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-bu
             ild-j2dudmr/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/nvhpc/nvc++ -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2
             odvuh67lt4/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrn
             pr7uwlu34qzqj2odvuh67lt4/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/nrnoc -I/gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/oc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build
             -j2dudmr -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/
             spack-build-j2dudmr/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnp
             r7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/src/nrnoc -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/s
             rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67
             lt4/spack-build-j2dudmr/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
             jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuro
             n-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7
             uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/src/parallel -I/gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack
             -build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db27
             19f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/
             src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67
             lt4/spack-build-j2dudmr/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src -I/gpfs/bbp.cscs.
             ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build
             /spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_d
             evelop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/gnu -I/gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/nrn
             mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack
             -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
             cproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0
             778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2o
             dvuh67lt4/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnp
             r7uwlu34qzqj2odvuh67lt4/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
             /ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/s
             pack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_dev
             elop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/sparse -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/sp
             arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208
             972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72
             070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/sp
             ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
             hpcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011a
             a0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj
             2odvuh67lt4/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/sundials/ida -I/gpf
             s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/
             spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6392
             4db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/s
             undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh
             67lt4/spack-build-j2dudmr/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
             ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
             ake/python-3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ss
             d/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/h
             pe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_
             map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-n
             euron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmr
             npr7uwlu34qzqj2odvuh67lt4/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/src/ivos -
             isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2089
             72/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e720
             70fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spa
             ck-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-pointer  
             --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,541,550
             ,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_lib.di
             r/__/ivoc/rubband.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivoc/rubba
             nd.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/rubband.cpp.o -c /g
             pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J126627
             0/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63
             924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src
             /ivoc/rubband.cpp
     3010    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
             gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
             cihpcproj12/2160106/pgcudafat0GNbC-Q0w_av.o: missing .note.GNU-sta
             ck section implies executable stack
     3011    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
             gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
             ur is deprecated and will be removed in a future version of the li
             nker
     3012    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
             gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
             ech_internal.a(cellorder.cpp.o): in function `coreneuron::solve_in
             terleaved2(int)':
  >> 3013    /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P204998/J1239
             689/spack-build/spack-stage-neuron-git.b59524a62aca3460c37f6404b39
             2a4ff39a588ac_develop-fiup6eoirqw4nugjbqwgxsl7xhd6ofcq/spack-build
             -fiup6eo/src/coreneuron/../../../spack-src/src/coreneuron/permute/
             cellorder.cpp:730:(.text+0x6b6f): undefined reference to `coreneur
             on::solve_interleaved2_launcher(coreneuron::NrnThread*, coreneuron
             ::InterleaveInfo*, int, void*)'
     3014    pgacclnk: child process exit status 1: /gpfs/bbp.cscs.ch/ssd/apps/
             bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/binutils
             -2.41-vvcm5q/bin/ld
  >> 3015    make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67l
             t4/spack-build-j2dudmr/share/coreneuron/nrnivmodl_core_makefile:15
             0: x86_64/special-core] Error 2
     3016    make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu3
             4qzqj2odvuh67lt4/spack-build-j2dudmr/bin'
  >> 3017    make[2]: *** [src/coreneuron/CMakeFiles/nrniv-core.dir/build.make:
             88: bin/x86_64/special-core] Error 2
     3018    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu3
             4qzqj2odvuh67lt4/spack-build-j2dudmr'
  >> 3019    make[1]: *** [CMakeFiles/Makefile2:2341: src/coreneuron/CMakeFiles
             /nrniv-core.dir/all] Error 2
     3020    make[1]: *** Waiting for unfinished jobs....
     3021    [ 31%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
             voc/scene.cpp.o
     3022    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-bu
             ild-j2dudmr/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/nvhpc/nvc++ -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2
             odvuh67lt4/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrn
             pr7uwlu34qzqj2odvuh67lt4/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/nrnoc -I/gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/oc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build
             -j2dudmr -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/
             spack-build-j2dudmr/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnp
             r7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/src/nrnoc -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/s
             rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67
             lt4/spack-build-j2dudmr/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
             jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuro
             n-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7
             uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/src/parallel -I/gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack
             -build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db27
             19f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/
             src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67
             lt4/spack-build-j2dudmr/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src -I/gpfs/bbp.cscs.
             ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build
             /spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_d
             evelop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/gnu -I/gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/nrn
             mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack
             -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
             cproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0
             778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2o
             dvuh67lt4/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnp
             r7uwlu34qzqj2odvuh67lt4/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
             /ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/s
             pack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_dev
             elop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/sparse -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/sp
             arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208
             972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72
             070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/sp
             ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
             hpcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011a
             a0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj
             2odvuh67lt4/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/sundials/ida -I/gpf
             s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/
             spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6392
             4db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/s
             undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh
             67lt4/spack-build-j2dudmr/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
             ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
             ake/python-3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ss
             d/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/h
             pe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_
             map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-n
             euron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmr
             npr7uwlu34qzqj2odvuh67lt4/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/src/ivos -
             isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2089
             72/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e720
             70fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spa
             ck-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-pointer  
             --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,541,550
             ,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_lib.di
             r/__/ivoc/scene.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivoc/scene.c
             pp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/scene.cpp.o -c /gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/ivoc/
             scene.cpp
     3023    [ 31%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
             voc/scenepic.cpp.o
     3024    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-bu
             ild-j2dudmr/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/nvhpc/nvc++ -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2
             odvuh67lt4/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrn
             pr7uwlu34qzqj2odvuh67lt4/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/nrnoc -I/gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/oc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build
             -j2dudmr -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/
             spack-build-j2dudmr/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnp
             r7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/src/nrnoc -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/s
             rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67
             lt4/spack-build-j2dudmr/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
             jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuro
             n-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7
             uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/src/parallel -I/gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack
             -build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db27
             19f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build-j2dudmr/
             src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67
             lt4/spack-build-j2dudmr/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src -I/gpfs/bbp.cscs.
             ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build
             /spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_d
             evelop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/gnu -I/gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/nrn
             mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack
             -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
             cproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0
             778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2o
             dvuh67lt4/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnp
             r7uwlu34qzqj2odvuh67lt4/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
             /ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/s
             pack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_dev
             elop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/sparse -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/sp
             arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208
             972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72
             070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/sp
             ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
             hpcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011a
             a0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj
             2odvuh67lt4/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/sundials/ida -I/gpf
             s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/
             spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6392
             4db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-src/src/s
             undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh
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             iles/nrniv_lib.dir/__/nrnpython/rxd_extracellular.cpp.o CMakeFiles
             /nrniv_lib.dir/__/nrnpython/rxd_intracellular.cpp.o CMakeFiles/nrn
             iv_lib.dir/__/nrnpython/rxd_vol.cpp.o CMakeFiles/nrniv_lib.dir/__/
             nrnpython/rxd_marching_cubes.cpp.o CMakeFiles/nrniv_lib.dir/__/nrn
             python/rxd_llgramarea.cpp.o CMakeFiles/nrniv_lib.dir/__/ivos/obser
             ve.cpp.o CMakeFiles/nrniv_lib.dir/__/ivos/resource.cpp.o   -L/gpfs
             /bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
             2.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib  -Wl,-rpath,/gpfs/bb
             p.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1
             2.3.0-skylake/readline-8.2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/b
             sd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurse
             s-6.4-6kdbhv/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_e
             xternals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/lib:/gpfs
             /bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
             2.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib:::::::::::::::::::::
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
             ::::::::::::::: ../../lib/libnrngnu.a ../../lib/libsparse13.a /gpf
             s/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_g
             cc-12.3.0-skylake/readline-8.2-pdugg7/lib/libreadline.so /gpfs/bbp
             .cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12
             .3.0-skylake/ncurses-6.4-6kdbhv/lib/libcurses.so /gpfs/bbp.cscs.ch
             /ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-sky
             lake/ncurses-6.4-6kdbhv/lib/libform.so /gpfs/bbp.cscs.ch/ssd/apps/
             bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3
             .11.6-bj4i6m/lib/libpython3.11.so -lpthread -lmpi -ldl -lnvcpumath
     3488    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu3
             4qzqj2odvuh67lt4/spack-build-j2dudmr'
     3489    [ 39%] Built target nrniv_lib
     3490    make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu3
             4qzqj2odvuh67lt4/spack-build-j2dudmr'
  >> 3491    make: *** [Makefile:169: all] Error 2

See build log for details:
  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266270/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-j2dudmrnpr7uwlu34qzqj2odvuh67lt4/spack-build-out.txt

$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i7n30: task 0: Exited with exit code 1
section_end:1714670432:step_script
section_start:1714670432:upload_artifacts_on_failure
Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=11262 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1266270 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=11340 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1266270 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=11540 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1266270 responseStatus=201 Created token=glcbt-64
section_end:1714670434:upload_artifacts_on_failure
section_start:1714670434:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1714670435:cleanup_file_variables
ERROR: Job failed: exit status 1


build-neuron-nmodl-nvhpc-acc-shared.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1714669239:resolve_secrets
Resolving secrets
section_end:1714669239:resolve_secrets
section_start:1714669239:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2009098613, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 208972, build ref , job ID 1266271
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1266271_PROD_P2160_CP3_C4
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2160107
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1266271_PROD_P2160_CP3_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --ntasks=2 --jobid=2160107 --cpus-per-task=8 --mem=160G     
section_end:1714669242:prepare_executor
section_start:1714669242:prepare_script
Preparing environment
Using git from spack modules
Running on r1i7n30 via bbpv1.epfl.ch...
section_end:1714669247:prepare_script
section_start:1714669247:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1714669248:get_sources
section_start:1714669248:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=295371 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1714669254:restore_cache
section_start:1714669254:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1266267)...
Runtime platform                                    arch=amd64 os=linux pid=295612 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1266267 responseStatus=200 OK token=glcbt-64
section_end:1714669255:download_artifacts
section_start:1714669255:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972/J1266271_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2160107/ccache
Config file:        /nvme/bbpcihpcproj12/2160107/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu May  2 19:01:01 2024
Local storage:
  Cache size (GB):   0.46 / 0.51 (89.97%)
  Files:            13876
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf

Concretized
--------------------------------
 -   nrtxnun  neuron@git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   2vmdhyp      ^libsonata-report@git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  tuewa3t      ^nmodl@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  l76xnwr      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mfss4bt          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qbhlkgj              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  f6wairf              ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  lxhgsum          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  slwtska          ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qe4yfyl      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  dw56njg      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  quibu6o          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
==> Installing libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop-2vmdhypk76x2cdexvvr6echq23uot5ic [40/50]
==> No binary for libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop-2vmdhypk76x2cdexvvr6echq23uot5ic found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop-2vmdhypk76x2cdexvvr6echq23uot5ic
  Stage: 1.39s.  Cmake: 4.11s.  Build: 1.32s.  Install: 0.10s.  Post-install: 0.10s.  Total: 7.18s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_nvhpc-23.1-skylake/libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e_develop-2vmdhy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124_develop-tuewa3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-qe4yfy
==> Installing neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-nrtxnunppqynvkd644cdlr5bq36ft7fb [50/50]
==> No binary for neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-nrtxnunppqynvkd644cdlr5bq36ft7fb found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    'make' '-j8'

7 errors found in build log:
     2957    [ 27%] Running nrnivmodl-core with internal mod files
     2958    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-bu
             ild-nrtxnun/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
             _externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
             e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
             proj12/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa07
             78fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5b
             q36ft7fb/spack-build-nrtxnun/bin/nrnivmodl-core -b SHARED -m /gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/i
             nstall_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e73
             0830af1124_develop-tuewa3/bin/nmodl -n internal -p 4 .
     2959    WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
             obs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neuron
             -git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqyn
             vkd644cdlr5bq36ft7fb/spack-build-nrtxnun/bin', compiling default o
             nes only!
     2960    [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd6
             44cdlr5bq36ft7fb/spack-build-nrtxnun/share/coreneuron/nrnivmodl_co
             re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36
             ft7fb/spack-build-nrtxnun MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
             fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software
             /install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e
             730830af1124_develop-tuewa3/bin/nmodl MODS_PATH=x86_64/corenrn/mod
             2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
     2961    make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd
             644cdlr5bq36ft7fb/spack-build-nrtxnun/bin'
     2962    make[3]: warning: -j4 forced in submake: resetting jobserver mode.
  >> 2963    make[3]: xcrun: No such file or directory
     2964    Default NMODL flags:
  >> 2965    diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
             y
     2966    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     2967    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     2968    [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
             ws <extern_neuron_var> definition in NMODL_GLOBAL
     2969    [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
             h cnexp solver
     2970    make  -f src/coreneuron/CMakeFiles/coreneuron-for-tests.dir/build.
             make src/coreneuron/CMakeFiles/coreneuron-for-tests.dir/depend
     2971    make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
             /bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neuron-gi
             t.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd
             644cdlr5bq36ft7fb/spack-build-nrtxnun'

     ...

     3027    [ 28%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
             voc/xyview.cpp.o
     3028    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-bu
             ild-nrtxnun/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/nvhpc/nvc++ -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr
             5bq36ft7fb/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunp
             pqynvkd644cdlr5bq36ft7fb/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/nrnoc -I/gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/oc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build
             -nrtxnun -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/
             spack-build-nrtxnun/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunpp
             qynvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/src/nrnoc -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/s
             rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft
             7fb/spack-build-nrtxnun/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
             jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neuro
             n-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqy
             nvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/src/parallel -I/gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack
             -build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db27
             19f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/
             src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft
             7fb/spack-build-nrtxnun/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src -I/gpfs/bbp.cscs.
             ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build
             /spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_d
             evelop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/gnu -I/gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/nrn
             mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack
             -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
             cproj12/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0
             778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5
             bq36ft7fb/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunpp
             qynvkd644cdlr5bq36ft7fb/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
             /ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/s
             pack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_dev
             elop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/sparse -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/sp
             arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208
             972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72
             070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/sp
             ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
             hpcproj12/P208972/J1266271/spack-build/spack-stage-neuron-git.011a
             a0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdl
             r5bq36ft7fb/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/sundials/ida -I/gpf
             s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/
             spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6392
             4db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/s
             undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36
             ft7fb/spack-build-nrtxnun/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
             ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
             ake/python-3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ss
             d/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/h
             pe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_
             map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-n
             euron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnun
             ppqynvkd644cdlr5bq36ft7fb/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/src/ivos -
             isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2089
             72/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e720
             70fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spa
             ck-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-pointer  
             --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,541,550
             ,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_lib.di
             r/__/ivoc/xyview.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivoc/xyview
             .cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/xyview.cpp.o -c /gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/iv
             oc/xyview.cpp
     3029    [ 28%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
             voc/field.cpp.o
     3030    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-bu
             ild-nrtxnun/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/nvhpc/nvc++ -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr
             5bq36ft7fb/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunp
             pqynvkd644cdlr5bq36ft7fb/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/nrnoc -I/gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/oc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build
             -nrtxnun -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/
             spack-build-nrtxnun/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunpp
             qynvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/src/nrnoc -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/s
             rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft
             7fb/spack-build-nrtxnun/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
             jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neuro
             n-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqy
             nvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/src/parallel -I/gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack
             -build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db27
             19f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/
             src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft
             7fb/spack-build-nrtxnun/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src -I/gpfs/bbp.cscs.
             ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build
             /spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_d
             evelop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/gnu -I/gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/nrn
             mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack
             -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
             cproj12/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0
             778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5
             bq36ft7fb/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunpp
             qynvkd644cdlr5bq36ft7fb/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
             /ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/s
             pack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_dev
             elop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/sparse -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/sp
             arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208
             972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72
             070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/sp
             ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
             hpcproj12/P208972/J1266271/spack-build/spack-stage-neuron-git.011a
             a0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdl
             r5bq36ft7fb/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/sundials/ida -I/gpf
             s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/
             spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6392
             4db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/s
             undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36
             ft7fb/spack-build-nrtxnun/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
             ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
             ake/python-3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ss
             d/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/h
             pe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_
             map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-n
             euron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnun
             ppqynvkd644cdlr5bq36ft7fb/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/src/ivos -
             isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2089
             72/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e720
             70fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spa
             ck-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-pointer  
             --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,541,550
             ,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_lib.di
             r/__/ivoc/field.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivoc/field.c
             pp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/field.cpp.o -c /gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/ivoc/
             field.cpp
     3031    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
             gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
             cihpcproj12/2160107/pgcudafatt9Mb5_ghP8Kd.o: missing .note.GNU-sta
             ck section implies executable stack
     3032    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
             gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
             ur is deprecated and will be removed in a future version of the li
             nker
  >> 3033    /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
             gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
             ech_internal.so: undefined reference to `coreneuron::solve_interle
             aved2_launcher(coreneuron::NrnThread*, coreneuron::InterleaveInfo*
             , int, void*)'
     3034    pgacclnk: child process exit status 1: /gpfs/bbp.cscs.ch/ssd/apps/
             bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/binutils
             -2.41-vvcm5q/bin/ld
  >> 3035    make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
             /P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdd
             e2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7
             fb/spack-build-nrtxnun/share/coreneuron/nrnivmodl_core_makefile:15
             0: x86_64/special-core] Error 2
     3036    make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd6
             44cdlr5bq36ft7fb/spack-build-nrtxnun/bin'
  >> 3037    make[2]: *** [src/coreneuron/CMakeFiles/nrniv-core.dir/build.make:
             88: bin/x86_64/special-core] Error 2
     3038    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd6
             44cdlr5bq36ft7fb/spack-build-nrtxnun'
  >> 3039    make[1]: *** [CMakeFiles/Makefile2:2353: src/coreneuron/CMakeFiles
             /nrniv-core.dir/all] Error 2
     3040    make[1]: *** Waiting for unfinished jobs....
     3041    [ 28%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
             voc/xdep.cpp.o
     3042    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-bu
             ild-nrtxnun/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/nvhpc/nvc++ -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
             EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
             208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2
             e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb
             /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
             pcproj12/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa
             0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr
             5bq36ft7fb/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
             ap_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-ne
             uron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunp
             pqynvkd644cdlr5bq36ft7fb/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/nrnoc -I/gpfs/bb
             p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spac
             k-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2
             719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/oc -I
             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266
             271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc
             63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build
             -nrtxnun -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
             08972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e
             72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/
             spack-build-nrtxnun/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunpp
             qynvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/src/nrnoc -I/gpfs/bbp.
             cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-
             build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db271
             9f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/s
             rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft
             7fb/spack-build-nrtxnun/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
             jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neuro
             n-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqy
             nvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/src/parallel -I/gpfs/bbp
             .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack
             -build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db27
             19f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/
             src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
             2/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbd
             de2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft
             7fb/spack-build-nrtxnun/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
             d/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spac
             k-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develo
             p-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src -I/gpfs/bbp.cscs.
             ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build
             /spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_d
             evelop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/gnu -I/gpfs/
             bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/sp
             ack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924d
             b2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/nrn
             mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
             /J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070
             fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack
             -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
             cproj12/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0
             778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5
             bq36ft7fb/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
             p_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neu
             ron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunpp
             qynvkd644cdlr5bq36ft7fb/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
             /ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/s
             pack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_dev
             elop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/sparse -I/gpfs
             /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/s
             pack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924
             db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/sp
             arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208
             972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72
             070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/sp
             ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
             hpcproj12/P208972/J1266271/spack-build/spack-stage-neuron-git.011a
             a0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdl
             r5bq36ft7fb/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
             gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-
             stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-
             nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/sundials/ida -I/gpf
             s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/
             spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc6392
             4db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/s
             undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
             j12/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778f
             bdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36
             ft7fb/spack-build-nrtxnun/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
             ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
             ake/python-3.11.6-bj4i6m/include/python3.11 -I/gpfs/bbp.cscs.ch/ss
             d/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/h
             pe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_
             map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-n
             euron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnun
             ppqynvkd644cdlr5bq36ft7fb/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/s
             sd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spa
             ck-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_devel
             op-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build-nrtxnun/src/ivos -
             isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2089
             72/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e720
             70fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spa
             ck-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-pointer  
             --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,541,550
             ,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_lib.di
             r/__/ivoc/xdep.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivoc/xdep.cpp
             .o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/xdep.cpp.o -c /gpfs/bbp.c
             scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-b
             uild/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719
             f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/ivoc/xde
             p.cpp
     3043    [ 28%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/c
             oreneuron/permute/balance.cpp.o
     3044    cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1
             266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7
             abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-bu
             ild-nrtxnun/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
             cihpcproj12/P208972/J1266265/spack/lib/spack/env/nvhpc/nvc++ -DCOR
             ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
             D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
             ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/gpfs/bbp.cscs.ch/ssd/gi
             tlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-st
             age-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nr
             txnunppqynvkd644cdlr5bq36ft7fb/spack-src/src/ivoc -I/gpfs/bbp.cscs
             .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-buil
             d/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_
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             /bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
             2.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib:::::::::::::::::::::
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
             ::::::::::::::: ../../lib/libnrngnu.a ../../lib/libsparse13.a /gpf
             s/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_g
             cc-12.3.0-skylake/readline-8.2-pdugg7/lib/libreadline.so /gpfs/bbp
             .cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12
             .3.0-skylake/ncurses-6.4-6kdbhv/lib/libcurses.so /gpfs/bbp.cscs.ch
             /ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-sky
             lake/ncurses-6.4-6kdbhv/lib/libform.so /gpfs/bbp.cscs.ch/ssd/apps/
             bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3
             .11.6-bj4i6m/lib/libpython3.11.so -lpthread -lmpi -ldl -lnvcpumath
     3492    make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd6
             44cdlr5bq36ft7fb/spack-build-nrtxnun'
     3493    [ 36%] Built target nrniv_lib
     3494    make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
             bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neuron-git
             .011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd6
             44cdlr5bq36ft7fb/spack-build-nrtxnun'
  >> 3495    make: *** [Makefile:169: all] Error 2

See build log for details:
  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266271/spack-build/spack-stage-neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-nrtxnunppqynvkd644cdlr5bq36ft7fb/spack-build-out.txt

$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i7n30: task 0: Exited with exit code 1
section_end:1714670429:step_script
section_start:1714670429:upload_artifacts_on_failure
Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=10997 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1266271 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=11038 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1266271 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=11083 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1266271 responseStatus=201 Created token=glcbt-64
section_end:1714670432:upload_artifacts_on_failure
section_start:1714670432:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1714670433:cleanup_file_variables
ERROR: Job failed: exit status 1


build-neuron-nmodl-nvhpc-omp-legacy.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1714669240:resolve_secrets
Resolving secrets
section_end:1714669240:resolve_secrets
section_start:1714669240:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor514099100, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 208972, build ref , job ID 1266272
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1266272_PROD_P2160_CP4_C5
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2160108
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1266272_PROD_P2160_CP4_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --ntasks=2 --jobid=2160108 --cpus-per-task=8 --mem=160G     
section_end:1714669241:prepare_executor
section_start:1714669241:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n33 via bbpv1.epfl.ch...
section_end:1714669245:prepare_script
section_start:1714669245:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1714669246:get_sources
section_start:1714669246:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=23482 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1714669252:restore_cache
section_start:1714669252:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1266267)...
Runtime platform                                    arch=amd64 os=linux pid=23634 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1266267 responseStatus=200 OK token=glcbt-64
section_end:1714669253:download_artifacts
section_start:1714669253:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266272/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266272/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266272/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266272/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266272/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266272/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972/J1266272_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2160108/ccache
Config file:        /nvme/bbpcihpcproj12/2160108/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu May  2 19:00:59 2024
Local storage:
  Cache size (GB):   0.45 / 0.51 (87.49%)
  Files:            13147
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf
 -       ^caliper+cuda cuda_arch=70

Concretized
--------------------------------
 -   orjvfyl  neuron@git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  wtaqeht      ^caliper@2.9.1%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~variorum build_system=cmake build_type=Release cuda_arch=70 generator=make patches=7b1ffa4 arch=linux-rhel7-skylake
[^]  inlzf5z          ^adiak@0.2.2%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  a46bi6u          ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^]  wtcpudz              ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^]  rytdxw5                  ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  7xnekxr          ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  vol6npp          ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   2vmdhyp      ^libsonata-report@git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  tuewa3t      ^nmodl@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  l76xnwr      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mfss4bt          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qbhlkgj              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  f6wairf              ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  lxhgsum          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  slwtska          ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qe4yfyl      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  dw56njg      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  quibu6o          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.2.2-inlzf5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_nvhpc-23.1-skylake/libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e_develop-2vmdhy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/caliper-2.9.1-wtaqeh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-qe4yfy
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124_develop-tuewa3
==> Installing neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-orjvfylglftzod2m3ltdzkr6m3hioblz [55/55]
==> No binary for neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-orjvfylglftzod2m3ltdzkr6m3hioblz found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-orjvfylglftzod2m3ltdzkr6m3hioblz
  Stage: 17.20s.  Cmake: 1m 21.96s.  Build: 32m 58.00s.  Install: 37.61s.  Post-install: 4.34s.  Total: 35m 22.06s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_nvhpc-23.1-skylake/neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-orjvfy
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be orjvfylglftzod2m3ltdzkr6m3hioblz
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory:            /nvme/bbpcihpcproj12/2160108/ccache
Config file:                /nvme/bbpcihpcproj12/2160108/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Thu May  2 19:39:10 2024
Cacheable calls:              984 / 1087 (90.52%)
  Hits:                       950 /  984 (96.54%)
    Direct:                   517 /  950 (54.42%)
    Preprocessed:             433 /  950 (45.58%)
  Misses:                      34 /  984 ( 3.46%)
Uncacheable calls:            103 / 1087 ( 9.48%)
  Autoconf compile/link:        5 /  103 ( 4.85%)
  Called for linking:          85 /  103 (82.52%)
  Called for preprocessing:     2 /  103 ( 1.94%)
  Compilation failed:           2 /  103 ( 1.94%)
  No input file:                8 /  103 ( 7.77%)
  Preprocessing failed:         1 /  103 ( 0.97%)
Successful lookups:
  Direct:                     517 /  983 (52.59%)
  Preprocessed:               433 /  465 (93.12%)
Local storage:
  Cache size (GB):           0.45 / 0.51 (87.36%)
  Files:                    13168
  Cleanups:                     1
  Hits:                       950 /  982 (96.74%)
  Misses:                      32 /  982 ( 3.26%)
  Reads:                     1965
  Writes:                     418
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1714671552:step_script
section_start:1714671552:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=71936 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected 
Created cache
section_end:1714671573:archive_cache
section_start:1714671573:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=72174 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1266272 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=72212 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1266272 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=72255 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1266272 responseStatus=201 Created token=glcbt-64
section_end:1714671575:upload_artifacts_on_success
section_start:1714671575:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1714671576:cleanup_file_variables
Job succeeded

build-neuron-nmodl-nvhpc-omp.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1714669240:resolve_secrets
Resolving secrets
section_end:1714669240:resolve_secrets
section_start:1714669240:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1462114807, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 208972, build ref , job ID 1266273
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1266273_PROD_P2160_CP5_C6
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2160109
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1266273_PROD_P2160_CP5_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --ntasks=2 --jobid=2160109 --cpus-per-task=8 --mem=160G     
section_end:1714669242:prepare_executor
section_start:1714669242:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n33 via bbpv1.epfl.ch...
section_end:1714669245:prepare_script
section_start:1714669245:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1714669246:get_sources
section_start:1714669246:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=23449 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1714669252:restore_cache
section_start:1714669252:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1266267)...
Runtime platform                                    arch=amd64 os=linux pid=23690 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1266267 responseStatus=200 OK token=glcbt-64
section_end:1714669253:download_artifacts
section_start:1714669253:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266273/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266273/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266273/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266273/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266273/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266273/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972/J1266273_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2160109/ccache
Config file:        /nvme/bbpcihpcproj12/2160109/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu May  2 19:00:59 2024
Local storage:
  Cache size (GB):   0.46 / 0.51 (89.53%)
  Files:            13764
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/tuewa3tvqrz6sljwoqxxmv443hbbe6tf
 -       ^caliper+cuda cuda_arch=70

Concretized
--------------------------------
 -   f3m5kig  neuron@git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  wtaqeht      ^caliper@2.9.1%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~variorum build_system=cmake build_type=Release cuda_arch=70 generator=make patches=7b1ffa4 arch=linux-rhel7-skylake
[^]  inlzf5z          ^adiak@0.2.2%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  a46bi6u          ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^]  wtcpudz              ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^]  rytdxw5                  ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  7xnekxr          ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  vol6npp          ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   2vmdhyp      ^libsonata-report@git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  tuewa3t      ^nmodl@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  l76xnwr      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mfss4bt          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qbhlkgj              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  f6wairf              ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  lxhgsum          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  slwtska          ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qe4yfyl      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  dw56njg      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  quibu6o          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.2.2-inlzf5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-qe4yfy
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124_develop-tuewa3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_nvhpc-23.1-skylake/libsonata-report-git.ea01d1df3350c3529f7a97db97d5c51272a08e8e_develop-2vmdhy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/caliper-2.9.1-wtaqeh
==> Installing neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-f3m5kigdwdzqw2hr7slyujl5f4rxoht2 [55/55]
==> No binary for neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-f3m5kigdwdzqw2hr7slyujl5f4rxoht2 found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4=develop-f3m5kigdwdzqw2hr7slyujl5f4rxoht2
  Stage: 17.94s.  Cmake: 1m 28.10s.  Build: 33m 20.29s.  Install: 21.37s.  Post-install: 0.67s.  Total: 35m 28.90s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_nvhpc-23.1-skylake/neuron-git.011aa0778fbdde2e72070fe7abc63924db2719f4_develop-f3m5ki
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be f3m5kigdwdzqw2hr7slyujl5f4rxoht2
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory:            /nvme/bbpcihpcproj12/2160109/ccache
Config file:                /nvme/bbpcihpcproj12/2160109/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Thu May  2 19:39:12 2024
Cacheable calls:              984 / 1087 (90.52%)
  Hits:                       951 /  984 (96.65%)
    Direct:                   516 /  951 (54.26%)
    Preprocessed:             435 /  951 (45.74%)
  Misses:                      33 /  984 ( 3.35%)
Uncacheable calls:            103 / 1087 ( 9.48%)
  Autoconf compile/link:        5 /  103 ( 4.85%)
  Called for linking:          85 /  103 (82.52%)
  Called for preprocessing:     2 /  103 ( 1.94%)
  Compilation failed:           2 /  103 ( 1.94%)
  No input file:                8 /  103 ( 7.77%)
  Preprocessing failed:         1 /  103 ( 0.97%)
Successful lookups:
  Direct:                     516 /  983 (52.49%)
  Preprocessed:               435 /  466 (93.35%)
Local storage:
  Cache size (GB):           0.46 / 0.51 (89.47%)
  Files:                    13837
  Cleanups:                     1
  Hits:                       951 /  982 (96.84%)
  Misses:                      31 /  982 ( 3.16%)
  Reads:                     1965
  Writes:                     418
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1714671553:step_script
section_start:1714671553:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=72038 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected 
Created cache
section_end:1714671575:archive_cache
section_start:1714671575:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=72512 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1266273 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=72598 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1266273 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=72674 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1266273 responseStatus=201 Created token=glcbt-64
section_end:1714671578:upload_artifacts_on_success
section_start:1714671578:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1714671579:cleanup_file_variables
Job succeeded

build-nmodl.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1714668911:resolve_secrets
Resolving secrets
section_end:1714668911:resolve_secrets
section_start:1714668911:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3432888469, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 208972, build ref , job ID 1266267
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1266267_PROD_P2160_CP2_C3
Job parameters: memory=160G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2160102
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1266267_PROD_P2160_CP2_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972 --ntasks=2 --jobid=2160102 --cpus-per-task=8 --mem=160G     
section_end:1714668913:prepare_executor
section_start:1714668913:prepare_script
Preparing environment
Using git from spack modules
Running on r1i6n18 via bbpv1.epfl.ch...
section_end:1714668917:prepare_script
section_start:1714668917:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1714668918:get_sources
section_start:1714668918:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:nmodl-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=256380 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1714668924:restore_cache
section_start:1714668924:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for spack_setup (1266265)...
Runtime platform                                    arch=amd64 os=linux pid=256503 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1266265 responseStatus=200 OK token=glcbt-64
section_end:1714668925:download_artifacts
section_start:1714668925:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266267/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266267/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266267/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266267/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266267/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266267/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/J1266265/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P208972/J1266267_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install nmodl%gcc ~legacy-unit  
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2160102/ccache
Config file:        /nvme/bbpcihpcproj12/2160102/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu May  2 18:55:30 2024
Local storage:
  Cache size (GB):  0.45 / 0.51 (88.45%)
  Files:            3866
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   nmodl%gcc~legacy-unit

Concretized
--------------------------------
 -   tuewa3t  nmodl@git.70553cc4d9092aafed42aa49ac4e730830af1124=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  pywly2v      ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  swjylul          ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[^]  ud3echq      ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  evtttrh      ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[^]  teske2k      ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca      ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv          ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  p3xbqxj          ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  7validy      ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw          ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo      ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  l76xnwr      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mfss4bt          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  qbhlkgj              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  f6wairf              ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to          ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu              ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  lxhgsum          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  slwtska          ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2inh3rt      ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz          ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  dw56njg      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  quibu6o          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  ihotvbs      ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw
==> Installing nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124=develop-tuewa3tvqrz6sljwoqxxmv443hbbe6tf [24/24]
==> No binary for nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124=develop-tuewa3tvqrz6sljwoqxxmv443hbbe6tf found: installing from source
==> No patches needed for nmodl
==> nmodl: Executing phase: 'cmake'
==> nmodl: Executing phase: 'build'
==> nmodl: Executing phase: 'install'
==> nmodl: Successfully installed nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124=develop-tuewa3tvqrz6sljwoqxxmv443hbbe6tf
  Stage: 56.75s.  Cmake: 4.06s.  Build: 1m 35.28s.  Install: 1.41s.  Post-install: 0.36s.  Total: 2m 38.22s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P208972/software/install_gcc-12.3.0-skylake/nmodl-git.70553cc4d9092aafed42aa49ac4e730830af1124_develop-tuewa3
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be tuewa3tvqrz6sljwoqxxmv443hbbe6tf
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory:      /nvme/bbpcihpcproj12/2160102/ccache
Config file:          /nvme/bbpcihpcproj12/2160102/ccache/ccache.conf
System config file:   /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:        Thu May  2 19:00:03 2024
Cacheable calls:       136 /  162 (83.95%)
  Hits:                134 /  136 (98.53%)
    Direct:             26 /  134 (19.40%)
    Preprocessed:      108 /  134 (80.60%)
  Misses:                2 /  136 ( 1.47%)
Uncacheable calls:      26 /  162 (16.05%)
  Called for linking:   23 /   26 (88.46%)
  No input file:         3 /   26 (11.54%)
Successful lookups:
  Direct:               26 /  136 (19.12%)
  Preprocessed:        108 /  110 (98.18%)
Local storage:
  Cache size (GB):    0.45 / 0.51 (88.46%)
  Files:              3870
  Hits:                134 /  136 (98.53%)
  Misses:                2 /  136 ( 1.47%)
  Reads:               272
  Writes:                4
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1714669205:step_script
section_start:1714669205:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:nmodl-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=259042 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected 
Created cache
section_end:1714669230:archive_cache
section_start:1714669230:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=259206 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1266267 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=259246 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1266267 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=259280 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1266267 responseStatus=201 Created token=glcbt-64
section_end:1714669232:upload_artifacts_on_success
section_start:1714669232:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1714669233:cleanup_file_variables
Job succeeded

GitLab logs for neuronsimulator-nrn#2864

!

mac-m1-cmake-build-cmake-on-off-off-address.txt

Running with gitlab-runner 15.4.0 (43b2dc3d)
  on macos-arm64 vGzz-bdp
section_start:1714668795:resolve_secrets
Resolving secrets
section_end:1714668795:resolve_secrets
section_start:1714668795:prepare_executor
Preparing the "shell" executor
Using Shell executor...
section_end:1714668795:prepare_executor
section_start:1714668795:prepare_script
Preparing environment
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1714668795:prepare_script
section_start:1714668795:get_sources
Getting source from Git repository
Fetching changes with git depth set to 20...
Initialized empty Git repository in /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/.git/
Created fresh repository.
Checking out 011aa077 as cornu/simplify_deps...
Skipping Git submodules setup
section_end:1714668797:get_sources
section_start:1714668797:restore_cache
Restoring cache
Checking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-cornu/simplify_deps-1-non_protected...
Runtime platform                                    arch=arm64 os=darwin pid=52502 revision=43b2dc3d version=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted. 
Successfully extracted cache
section_end:1714668802:restore_cache
section_start:1714668802:step_script
Executing "step_script" stage of the job script
$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command
$ real_python=$(python3 resolve_shim.py)
$ echo "python3=$(command -v python3) is really ${real_python}"
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv
$ venv/bin/python3 -m ensurepip --upgrade --default-pip
Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpngjeox_e
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpngjeox_e/setuptools-68.2.2-py3-none-any.whl
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpngjeox_e/pip-23.3.1-py3-none-any.whl
Installing collected packages: setuptools, pip
Successfully installed pip-23.3.1 setuptools-68.2.2
$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1)
Collecting pip
  Using cached pip-24.0-py3-none-any.whl.metadata (3.6 kB)
Collecting wheel (from -r nrn_requirements.txt (line 1))
  Using cached wheel-0.43.0-py3-none-any.whl.metadata (2.2 kB)
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (68.2.2)
Collecting setuptools (from -r nrn_requirements.txt (line 2))
  Using cached setuptools-69.5.1-py3-none-any.whl.metadata (6.2 kB)
Collecting setuptools_scm (from -r nrn_requirements.txt (line 3))
  Using cached setuptools_scm-8.0.4-py3-none-any.whl.metadata (6.4 kB)
Collecting scikit-build (from -r nrn_requirements.txt (line 4))
  Using cached scikit_build-0.17.6-py3-none-any.whl.metadata (14 kB)
Collecting matplotlib (from -r nrn_requirements.txt (line 5))
  Using cached matplotlib-3.8.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting bokeh<3 (from -r nrn_requirements.txt (line 7))
  Using cached bokeh-2.4.3-py3-none-any.whl.metadata (14 kB)
Collecting ipython (from -r nrn_requirements.txt (line 8))
  Using cached ipython-8.24.0-py3-none-any.whl.metadata (4.9 kB)
Collecting cython<3 (from -r nrn_requirements.txt (line 9))
  Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB)
Collecting packaging (from -r nrn_requirements.txt (line 10))
  Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pytest<=8.1.1 (from -r nrn_requirements.txt (line 11))
  Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB)
Collecting pytest-cov (from -r nrn_requirements.txt (line 12))
  Using cached pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB)
Collecting mpi4py (from -r nrn_requirements.txt (line 13))
  Using cached mpi4py-3.1.6-cp310-cp310-macosx_12_0_arm64.whl
Collecting numpy (from -r nrn_requirements.txt (line 14))
  Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB)
Collecting find_libpython (from -r nrn_requirements.txt (line 15))
  Using cached find_libpython-0.4.0-py3-none-any.whl.metadata (2.8 kB)
Collecting typing-extensions (from setuptools_scm->-r nrn_requirements.txt (line 3))
  Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB)
Collecting tomli>=1 (from setuptools_scm->-r nrn_requirements.txt (line 3))
  Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB)
Collecting distro (from scikit-build->-r nrn_requirements.txt (line 4))
  Using cached distro-1.9.0-py3-none-any.whl.metadata (6.8 kB)
Collecting contourpy>=1.0.1 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting cycler>=0.10 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached fonttools-4.51.0-cp310-cp310-macosx_10_9_universal2.whl.metadata (159 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB)
Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.2 kB)
Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB)
Collecting python-dateutil>=2.7 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting Jinja2>=2.9 (from bokeh<3->-r nrn_requirements.txt (line 7))
  Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
Collecting PyYAML>=3.10 (from bokeh<3->-r nrn_requirements.txt (line 7))
  Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB)
Collecting tornado>=5.1 (from bokeh<3->-r nrn_requirements.txt (line 7))
  Using cached tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl.metadata (2.5 kB)
Collecting decorator (from ipython->-r nrn_requirements.txt (line 8))
  Using cached decorator-5.1.1-py3-none-any.whl.metadata (4.0 kB)
Collecting jedi>=0.16 (from ipython->-r nrn_requirements.txt (line 8))
  Using cached jedi-0.19.1-py2.py3-none-any.whl.metadata (22 kB)
Collecting matplotlib-inline (from ipython->-r nrn_requirements.txt (line 8))
  Using cached matplotlib_inline-0.1.7-py3-none-any.whl.metadata (3.9 kB)
Collecting prompt-toolkit<3.1.0,>=3.0.41 (from ipython->-r nrn_requirements.txt (line 8))
  Using cached prompt_toolkit-3.0.43-py3-none-any.whl.metadata (6.5 kB)
Collecting pygments>=2.4.0 (from ipython->-r nrn_requirements.txt (line 8))
  Using cached pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB)
Collecting stack-data (from ipython->-r nrn_requirements.txt (line 8))
  Using cached stack_data-0.6.3-py3-none-any.whl.metadata (18 kB)
Collecting traitlets>=5.13.0 (from ipython->-r nrn_requirements.txt (line 8))
  Using cached traitlets-5.14.3-py3-none-any.whl.metadata (10 kB)
Collecting exceptiongroup (from ipython->-r nrn_requirements.txt (line 8))
  Using cached exceptiongroup-1.2.1-py3-none-any.whl.metadata (6.6 kB)
Collecting pexpect>4.3 (from ipython->-r nrn_requirements.txt (line 8))
  Using cached pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB)
Collecting iniconfig (from pytest<=8.1.1->-r nrn_requirements.txt (line 11))
  Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
Collecting pluggy<2.0,>=1.4 (from pytest<=8.1.1->-r nrn_requirements.txt (line 11))
  Using cached pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB)
Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov->-r nrn_requirements.txt (line 12))
  Using cached coverage-7.5.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (8.2 kB)
Collecting parso<0.9.0,>=0.8.3 (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 8))
  Using cached parso-0.8.4-py2.py3-none-any.whl.metadata (7.7 kB)
Collecting MarkupSafe>=2.0 (from Jinja2>=2.9->bokeh<3->-r nrn_requirements.txt (line 7))
  Using cached MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB)
Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 8))
  Using cached ptyprocess-0.7.0-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting wcwidth (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 8))
  Using cached wcwidth-0.2.13-py2.py3-none-any.whl.metadata (14 kB)
Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5))
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting executing>=1.2.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8))
  Using cached executing-2.0.1-py2.py3-none-any.whl.metadata (9.0 kB)
Collecting asttokens>=2.1.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8))
  Using cached asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB)
Collecting pure-eval (from stack-data->ipython->-r nrn_requirements.txt (line 8))
  Using cached pure_eval-0.2.2-py3-none-any.whl.metadata (6.2 kB)
Using cached pip-24.0-py3-none-any.whl (2.1 MB)
Using cached wheel-0.43.0-py3-none-any.whl (65 kB)
Using cached setuptools-69.5.1-py3-none-any.whl (894 kB)
Using cached setuptools_scm-8.0.4-py3-none-any.whl (42 kB)
Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB)
Using cached matplotlib-3.8.4-cp310-cp310-macosx_11_0_arm64.whl (7.5 MB)
Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB)
Using cached ipython-8.24.0-py3-none-any.whl (816 kB)
Using cached Cython-0.29.37-py2.py3-none-any.whl (989 kB)
Using cached packaging-24.0-py3-none-any.whl (53 kB)
Using cached pytest-8.1.1-py3-none-any.whl (337 kB)
Using cached pytest_cov-5.0.0-py3-none-any.whl (21 kB)
Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB)
Using cached find_libpython-0.4.0-py3-none-any.whl (8.7 kB)
Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl (244 kB)
Using cached coverage-7.5.0-cp310-cp310-macosx_11_0_arm64.whl (210 kB)
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Using cached exceptiongroup-1.2.1-py3-none-any.whl (16 kB)
Using cached fonttools-4.51.0-cp310-cp310-macosx_10_9_universal2.whl (2.8 MB)
Using cached jedi-0.19.1-py2.py3-none-any.whl (1.6 MB)
Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB)
Using cached pexpect-4.9.0-py2.py3-none-any.whl (63 kB)
Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl (3.4 MB)
Using cached pluggy-1.5.0-py3-none-any.whl (20 kB)
Using cached prompt_toolkit-3.0.43-py3-none-any.whl (386 kB)
Using cached pygments-2.17.2-py3-none-any.whl (1.2 MB)
Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB)
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl (169 kB)
Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Using cached tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl (433 kB)
Using cached traitlets-5.14.3-py3-none-any.whl (85 kB)
Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB)
Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB)
Using cached distro-1.9.0-py3-none-any.whl (20 kB)
Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Using cached matplotlib_inline-0.1.7-py3-none-any.whl (9.9 kB)
Using cached stack_data-0.6.3-py3-none-any.whl (24 kB)
Using cached asttokens-2.4.1-py2.py3-none-any.whl (27 kB)
Using cached executing-2.0.1-py2.py3-none-any.whl (24 kB)
Using cached MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl (18 kB)
Using cached parso-0.8.4-py2.py3-none-any.whl (103 kB)
Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB)
Using cached wcwidth-0.2.13-py2.py3-none-any.whl (34 kB)
Installing collected packages: wcwidth, pure-eval, ptyprocess, find_libpython, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, executing, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython
  Attempting uninstall: setuptools
    Found existing installation: setuptools 68.2.2
    Uninstalling setuptools-68.2.2:
      Successfully uninstalled setuptools-68.2.2
  Attempting uninstall: pip
    Found existing installation: pip 23.3.1
    Uninstalling pip-23.3.1:
      Successfully uninstalled pip-23.3.1
Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.5 PyYAML-6.0.1 asttokens-2.4.1 bokeh-2.4.3 contourpy-1.2.1 coverage-7.5.0 cycler-0.12.1 cython-0.29.37 decorator-5.1.1 distro-1.9.0 exceptiongroup-1.2.1 executing-2.0.1 find_libpython-0.4.0 fonttools-4.51.0 iniconfig-2.0.0 ipython-8.24.0 jedi-0.19.1 kiwisolver-1.4.5 matplotlib-3.8.4 matplotlib-inline-0.1.7 mpi4py-3.1.6 numpy-1.26.4 packaging-24.0 parso-0.8.4 pexpect-4.9.0 pillow-10.3.0 pip-24.0 pluggy-1.5.0 prompt-toolkit-3.0.43 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.17.2 pyparsing-3.1.2 pytest-8.1.1 pytest-cov-5.0.0 python-dateutil-2.9.0.post0 scikit-build-0.17.6 setuptools-69.5.1 setuptools_scm-8.0.4 six-1.16.0 stack-data-0.6.3 tomli-2.0.1 tornado-6.4 traitlets-5.14.3 typing-extensions-4.11.0 wcwidth-0.2.13 wheel-0.43.0
$ git submodule update --init --recursive --force --depth 1 -- external/nmodl
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl'
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl'...
Submodule path 'external/nmodl': checked out '70553cc4d9092aafed42aa49ac4e730830af1124'
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions'
Submodule 'ext/backward' (https://github.com/bombela/backward-cpp.git) registered for path 'external/nmodl/ext/backward'
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2'
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11'
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen'
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt'
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json'
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11'
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog'
Submodule 'test/usecases/references' (https://github.com/BlueBrain/nmodl-references.git) registered for path 'external/nmodl/test/usecases/references'
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'...
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl/ext/backward'...
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl/ext/catch2'...
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl/ext/cli11'...
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl/ext/eigen'...
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl/ext/fmt'...
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl/ext/json'...
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl/ext/pybind11'...
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl/ext/spdlog'...
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl/test/usecases/references'...
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out '8f8115597817365c5c4fa39e217b3ab0b3640cb2'
Submodule path 'external/nmodl/ext/backward': checked out '51f0700452cf71c57d43c2d028277b24cde32502'
From https://github.com/catchorg/Catch2
 * branch            8ac8190e494a381072c89f5e161b92a08d98b37b -> FETCH_HEAD
Submodule path 'external/nmodl/ext/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
From https://github.com/CLIUtils/CLI11
 * branch            f4d0731cebb123ff0ace712c099dffbcd2c58e5a -> FETCH_HEAD
Submodule path 'external/nmodl/ext/cli11': checked out 'f4d0731cebb123ff0ace712c099dffbcd2c58e5a'
From https://gitlab.com/libeigen/eigen
 * branch            3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
From https://github.com/fmtlib/fmt
 * branch            e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281'
From https://github.com/nlohmann/json
 * branch            9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/json': checked out '9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03'
From https://github.com/pybind/pybind11
 * branch            8a099e44b3d5f85b20f05828d919d2332a8de841 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/pybind11': checked out '8a099e44b3d5f85b20f05828d919d2332a8de841'
From https://github.com/gabime/spdlog
 * branch            7c02e204c92545f869e2f04edaab1f19fe8b19fd -> FETCH_HEAD
Submodule path 'external/nmodl/ext/spdlog': checked out '7c02e204c92545f869e2f04edaab1f19fe8b19fd'
From https://github.com/BlueBrain/nmodl-references
 * branch            c9f0aaa9270e9a49598c5424ad03eaa48a7eec47 -> FETCH_HEAD
Submodule path 'external/nmodl/test/usecases/references': checked out 'c9f0aaa9270e9a49598c5424ad03eaa48a7eec47'
$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt
Ignoring importlib-metadata: markers 'python_version < "3.9"' don't match your environment
Ignoring importlib-resources: markers 'python_version < "3.9"' don't match your environment
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Requirement already satisfied: coverage>=5.2.1 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=5.2.1->pytest-cov->-r external/nmodl/requirements.txt (line 13)) (7.5.0)
Collecting jupyter-core!=5.0.*,>=4.12 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
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Requirement already satisfied: python-dateutil>=2.8.2 in ./venv/lib/python3.10/site-packages (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) (2.9.0.post0)
Collecting pyzmq>=23.0 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
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Collecting mdit-py-plugins~=0.3.4 (from myst_parser<2.0.0->-r external/nmodl/requirements.txt (line 18))
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Collecting nbclient>=0.5.0 (from nbconvert->-r external/nmodl/requirements.txt (line 20))
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Collecting nbformat>=5.7 (from nbconvert->-r external/nmodl/requirements.txt (line 20))
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Collecting pandocfilters>=1.4.1 (from nbconvert->-r external/nmodl/requirements.txt (line 20))
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Collecting snowballstemmer>=2.0 (from sphinx<6->-r external/nmodl/requirements.txt (line 24))
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Collecting mdurl~=0.1 (from markdown-it-py<3.0.0,>=1.0.0->myst_parser<2.0.0->-r external/nmodl/requirements.txt (line 18))
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Collecting urllib3<3,>=1.21.1 (from requests>=2.5.0->sphinx<6->-r external/nmodl/requirements.txt (line 24))
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Collecting overrides>=5.0 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting prometheus-client>=0.9 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
  Using cached prometheus_client-0.20.0-py3-none-any.whl.metadata (1.8 kB)
Collecting send2trash>=1.8.2 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
  Using cached Send2Trash-1.8.3-py3-none-any.whl.metadata (4.0 kB)
Collecting terminado>=0.8.3 (from jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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  Using cached websocket_client-1.8.0-py3-none-any.whl.metadata (8.0 kB)
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Collecting httpx>=0.25.0 (from jupyterlab<4.2,>=4.1.1->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting jupyter-lsp>=2.0.0 (from jupyterlab<4.2,>=4.1.1->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting sniffio>=1.1 (from anyio>=3.1.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting argon2-cffi-bindings (from argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
  Using cached argon2_cffi_bindings-21.2.0-cp38-abi3-macosx_10_9_universal2.whl.metadata (6.7 kB)
Collecting httpcore==1.* (from httpx>=0.25.0->jupyterlab<4.2,>=4.1.1->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
  Using cached httpcore-1.0.5-py3-none-any.whl.metadata (20 kB)
Collecting h11<0.15,>=0.13 (from httpcore==1.*->httpx>=0.25.0->jupyterlab<4.2,>=4.1.1->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting python-json-logger>=2.0.4 (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
  Using cached python_json_logger-2.0.7-py3-none-any.whl.metadata (6.5 kB)
Collecting rfc3339-validator (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting rfc3986-validator>=0.1.1 (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Requirement already satisfied: asttokens>=2.1.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) (2.4.1)
Requirement already satisfied: pure-eval in ./venv/lib/python3.10/site-packages (from stack-data->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) (0.2.2)
Collecting fqdn (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting isoduration (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
  Using cached isoduration-20.11.0-py3-none-any.whl.metadata (5.7 kB)
Collecting jsonpointer>1.13 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting uri-template (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting webcolors>=1.11 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting cffi>=1.0.1 (from argon2-cffi-bindings->argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting pycparser (from cffi>=1.0.1->argon2-cffi-bindings->argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting arrow>=0.15.0 (from isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
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Collecting types-python-dateutil>=2.8.10 (from arrow>=0.15.0->isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
  Using cached types_python_dateutil-2.9.0.20240316-py3-none-any.whl.metadata (1.8 kB)
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Installing collected packages: webencodings, snowballstemmer, mpmath, mistune, fastjsonschema, widgetsnbextension, websocket-client, webcolors, urllib3, uri-template, types-python-dateutil, tinycss2, terminado, sympy, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, sniffio, send2trash, rpds-py, rfc3986-validator, rfc3339-validator, qtpy, pyzmq, python-json-logger, pycparser, psutil, prometheus-client, platformdirs, pathspec, pandocfilters, overrides, nest-asyncio, mdurl, jupyterlab-widgets, jupyterlab-pygments, jsonpointer, json5, imagesize, idna, h11, fqdn, docutils, defusedxml, debugpy, comm, charset-normalizer, certifi, bleach, babel, attrs, async-lru, appnope, alabaster, scikit-build-core, requests, referencing, markdown-it-py, jupyter-server-terminals, jupyter-core, httpcore, cffi, beautifulsoup4, arrow, anyio, sphinx, mdit-py-plugins, jupyter-client, jsonschema-specifications, isoduration, httpx, argon2-cffi-bindings, sphinxcontrib-jquery, myst_parser, jsonschema, ipywidgets, ipykernel, argon2-cffi, sphinx-rtd-theme, qtconsole, nbformat, jupyter-console, nbclient, jupyter-events, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, notebook, jupyter
Successfully installed alabaster-0.7.16 anyio-4.3.0 appnope-0.1.4 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 async-lru-2.0.4 attrs-23.2.0 babel-2.14.0 beautifulsoup4-4.12.3 bleach-6.1.0 certifi-2024.2.2 cffi-1.16.0 charset-normalizer-3.3.2 comm-0.2.2 debugpy-1.8.1 defusedxml-0.7.1 docutils-0.19 fastjsonschema-2.19.1 fqdn-1.5.1 h11-0.14.0 httpcore-1.0.5 httpx-0.27.0 idna-3.7 imagesize-1.4.1 ipykernel-6.29.4 ipywidgets-8.1.2 isoduration-20.11.0 json5-0.9.25 jsonpointer-2.4 jsonschema-4.22.0 jsonschema-specifications-2023.12.1 jupyter-1.0.0 jupyter-client-8.6.1 jupyter-console-6.6.3 jupyter-core-5.7.2 jupyter-events-0.10.0 jupyter-lsp-2.2.5 jupyter-server-2.14.0 jupyter-server-terminals-0.5.3 jupyterlab-4.1.8 jupyterlab-pygments-0.3.0 jupyterlab-server-2.27.1 jupyterlab-widgets-3.0.10 markdown-it-py-2.2.0 mdit-py-plugins-0.3.5 mdurl-0.1.2 mistune-2.0.5 mpmath-1.3.0 myst_parser-1.0.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.9.3 nest-asyncio-1.6.0 notebook-7.1.3 notebook-shim-0.2.4 overrides-7.7.0 pandocfilters-1.5.1 pathspec-0.12.1 platformdirs-4.2.1 prometheus-client-0.20.0 psutil-5.9.8 pycparser-2.22 python-json-logger-2.0.7 pyzmq-26.0.3 qtconsole-5.5.1 qtpy-2.4.1 referencing-0.35.1 requests-2.31.0 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.18.0 scikit-build-core-0.9.3 send2trash-1.8.3 sniffio-1.3.1 snowballstemmer-2.2.0 soupsieve-2.5 sphinx-5.3.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 sympy-1.12 terminado-0.18.1 tinycss2-1.3.0 types-python-dateutil-2.9.0.20240316 uri-template-1.3.0 urllib3-2.2.1 webcolors-1.13 webencodings-0.5.1 websocket-client-1.8.0 widgetsnbextension-4.0.10
$ source ./venv/bin/activate
$ export PYTHON=${PWD}/venv/bin/python
$ ${PYTHON} --version
Python 3.10.13
$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"
$ export CXX=${CXX:-g++}
$ export CC=${CC:-gcc}
$ brew install flex bison
Warning: flex 2.6.4_2 is already installed and up-to-date.
To reinstall 2.6.4_2, run:
  brew reinstall flex
Warning: bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
  brew reinstall bison
$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"
$ export INSTALL_DIR=$(pwd)/install
$ echo $LANG

$ echo $LC_ALL

$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")
$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'
$ cmake_args=(-G Ninja)
$ if [[ -n "${sanitizer}" ]]; then
$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))
$ fi
$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})
$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")
$ mkdir build && cd build
$ echo "Building with ${cmake_args[@]}"
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/venv/bin/python
$ cmake .. "${cmake_args[@]}"
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- Sub-module : missing external/coding-conventions : running git submodule update --init
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions'
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/coding-conventions'...
Submodule path 'external/coding-conventions': checked out '3d157f9c8ea94d196a825aaa7f523265e360dc4b'
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123'
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/Random123'...
From https://github.com/BlueBrain/Random123
 * branch            b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1'
-- 3rd party project: using Random123 from "external/Random123"
-- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen
Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen'
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/eigen'...
From https://gitlab.com/libeigen/eigen
 * branch            3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
-- 3rd party project: using eigen from "external/eigen"
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") 
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6") 
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include  
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") 
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") 
-- Found MPI: TRUE (found version "3.1")  
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11'
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/CLI11'...
From https://github.com/CLIUtils/CLI11
 * branch            291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2'
-- 3rd party project: using CLI11 from "external/CLI11"
CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Building CoreNEURON
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") 
-- Found Perl: /usr/bin/perl (found version "5.30.3") 
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH) 
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl
-- CHECKING FOR FLEX/BISON
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") 
--  Adding Flex include path as : /opt/homebrew/opt/flex/include/
-- NMODL_TEST_FORMATTING: OFF
-- NMODL_GIT_HOOKS: OFF
-- NMODL_GIT_COMMIT_HOOKS: 
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg
-- NMODL_STATIC_ANALYSIS: OFF
-- NMODL_TEST_STATIC_ANALYSIS: OFF
-- 3rd party project: using eigen from "ext/eigen"
-- 3rd party project: using fmt from "ext/fmt"
-- Version: 10.2.1
-- Build type: Custom
-- 3rd party project: using json from "ext/json"
-- Using the multi-header code from /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/nmodl/ext/json/include/
-- 3rd party project: using pybind11 from "ext/pybind11"
-- pybind11 v2.11.1 
CMake Warning (dev) at external/nmodl/ext/pybind11/tools/FindPythonLibsNew.cmake:98 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  external/nmodl/ext/pybind11/tools/pybind11Tools.cmake:50 (find_package)
  external/nmodl/ext/pybind11/tools/pybind11Common.cmake:188 (include)
  external/nmodl/ext/pybind11/CMakeLists.txt:210 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.6") 
-- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- 3rd party project: using spdlog from "ext/spdlog"
-- Build spdlog: 1.13.0
CMake Warning (dev) at external/nmodl/ext/spdlog/CMakeLists.txt:91 (option):
  Policy CMP0077 is not set: option() honors normal variables.  Run "cmake
  --help-policy CMP0077" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  For compatibility with older versions of CMake, option is clearing the
  normal variable 'SPDLOG_FMT_EXTERNAL'.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Build type: Custom
-- CHECKING FOR PYTHON
CMake Warning (dev) at external/nmodl/CMakeLists.txt:173 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.8") 
-- 
-- Configured NMODL 0.0 (70553cc 2024-05-01 23:16:44 +0200)
-- 
-- You can now build NMODL using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------------+--------------------------------------------------------
--  Target             |   Description
-- --------------------+--------------------------------------------------------
-- test                | Run unit tests
-- install             | Will install NMODL to: /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/install
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -openmp-simd 
-- Build Type          | Custom
-- Python Bindings     | OFF
-- Flex                | /opt/homebrew/opt/flex/bin/flex
-- Bison               | /opt/homebrew/opt/bison/bin/bison
-- Python              | /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/venv/bin/python
--   Linked against    | ON
-- --------------------+--------------------------------------------------------
--  See documentation : https://github.com/BlueBrain/nmodl/
-- --------------------+--------------------------------------------------------
-- 
-- Will look recursively to includes and libs of coreneuron-core
-- coreneuron-core is composed of /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- For coreneuron-core got ' /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib' and ''
-- 
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type          | SHARED
-- MPI                 | ON
--   DYNAMIC           | OFF
--   INC               | /opt/homebrew/Cellar/open-mpi/5.0.1/include
-- OpenMP              | ON
-- NMODL PATH          | /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/bin/nmodl
-- NMODL FLAGS         | 
-- GPU Support         | OFF
-- Auto Timeout        | ON
-- Wrap exp()          | OFF
-- SplayTree Queue     | ON
-- NetReceive Buffer   | ON
-- Caliper             | OFF
-- Likwid              | OFF
-- Unit Tests          | ON
-- Reporting           | OFF
-- --------------------+--------------------------------------------------------
-- 
-- Will look recursively to includes and libs of nrniv_lib
-- nrniv_lib is composed of nrngnu
-- Will look recursively to includes and libs of nrngnu
-- For nrngnu got '' and ''
-- nrniv_lib is composed of sparse13
-- Will look recursively to includes and libs of sparse13
-- For sparse13 got '' and ''
-- nrniv_lib is composed of Threads::Threads
-- Will look recursively to includes and libs of Threads::Threads
-- For Threads::Threads got '' and ''
-- nrniv_lib is composed of /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- nrniv_lib is composed of /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd
-- nrniv_lib is composed of /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- nrniv_lib is composed of /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- nrniv_lib is composed of /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- For nrniv_lib got '       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib' and ' -I/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/eigen -I/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/src/nrniv/oc_generated -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -I/opt/homebrew/Cellar/open-mpi/5.0.1/include -I/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/ivos -I/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/src/ivos   '
-- Sub-module : missing /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/catch2 : running git submodule update --init
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2'
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/external/catch2'...
Submodule path 'external/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
-- Found Python module 'pytest' with version(s): 8.1.1
-- Found Python module 'pytest_cov' with version(s): 5.0.0
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata'
Cloning into '/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/test/rxd/testdata'...
From https://github.com/neuronsimulator/rxdtestdata
 * branch            30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD
Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58'
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0")  
-- 
-- Configured NEURON 9.0.0
-- 
-- You can now build NEURON using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
--  Target       |   Description
-- --------------+--------------------------------------------------------------
-- install       | Will install NEURON to: /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/install
--               | Change the install location of NEURON using:
--               |   cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs          | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall     | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
--  Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER    | /usr/bin/gcc
-- CXX COMPILER  | /usr/bin/g++
-- BUILD_TYPE    | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug)
-- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd
-- Shared        | ON
-- MPI           | ON
--   DYNAMIC     | OFF
--   INC         | /opt/homebrew/Cellar/open-mpi/5.0.1/include
--   LIB         | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Python        | ON
--   DYNAMIC     | OFF
--   MODULE      | ON
--  python3.10 (default)
--   EXE         | /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/venv/bin/python
--   INC         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10
--   LIB         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline      | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses        | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D          | OFF
-- Interviews    | OFF
-- CoreNEURON    | ON
--   PATH        | /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/coreneuron
--   LINK FLAGS  |  -lcorenrnmech  /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
-- Tests         | ON
-- --------------+--------------------------------------------------------------
--  See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
-- 
-- Configuring done (25.4s)
-- Generating done (0.3s)
-- Build files have been written to: /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build
$ ccache -z
Statistics zeroed
$ ccache -vs 2>/dev/null
Cache directory:    /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated:      Thu May  2 18:54:37 2024
Local storage:
  Cache size (GiB):  0.7 / 5.0 (13.01%)
  Files:            6165
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
$ cmake --build . --parallel
[0/2] Re-checking globbed directories...
[1/1921] Generating share/nrn/demo/demo.ses
[2/1921] Generating share/nrn/demo/dend3/control.hoc
[3/1921] Generating share/nrn/demo/cycle.hoc
[4/1921] Generating share/nrn/demo/d3init.hoc
[5/1921] Generating share/nrn/demo/demo.hoc
[6/1921] Generating share/nrn/demo/dend3.ses
[7/1921] Generating share/nrn/demo/dend3/dend3.nrn
[8/1921] Generating share/nrn/demo/dend3/syn3.hoc
[9/1921] Generating share/nrn/demo/dynclamp.ses
[10/1921] Generating share/nrn/demo/hh.hoc
[11/1921] Generating share/nrn/demo/pyramid.ses
[12/1921] Update hh.mod for CoreNEURON compatibility
[13/1921] Generating share/nrn/demo/dynchan.ses
[14/1921] Generating share/nrn/demo/dynclamp.hoc
[15/1921] Generating share/nrn/demo/hh.ses
[16/1921] Generating share/nrn/demo/pyramid.nrn
[17/1921] Generating share/nrn/demo/nomodel.hoc
[18/1921] Generating share/nrn/demo/reconst.hoc
[19/1921] Generating share/nrn/demo/release.hoc
[20/1921] Generating share/nrn/demo/release/cachan1.mod
[21/1921] Generating share/nrn/demo/release/camchan.mod
[22/1921] Generating share/nrn/demo/release.ses
[23/1921] Generating share/nrn/demo/release/invlfire.mod
[24/1921] Generating share/nrn/demo/release/khhchan.mod
[25/1921] Generating share/nrn/demo/release/cabpump.mod
[26/1921] Generating share/nrn/demo/release/nacaex.mod
[27/1921] Generating share/nrn/demo/release/nachan.mod
[28/1921] Generating share/nrn/demo/release/capump.mod
[29/1921] Generating share/nrn/demo/release/release.mod
[30/1921] Generating share/nrn/demo/singhh.ses
[31/1921] Generating share/nrn/demo/singhh.hoc
[32/1921] Generating share/nrn/demo/singhhchan.hoc
[33/1921] Generating share/nrn/demo/sync/cell.hoc
[34/1921] Generating share/nrn/demo/sync/init.hoc
[35/1921] Generating share/nrn/demo/sync/demosync.hoc
[36/1921] Generating share/nrn/demo/sync/spkplot.hoc
[37/1921] Generating share/nrn/demo/testca.hoc
[38/1921] Generating share/nrn/demo/sync/synchronize.hoc
[39/1921] Generating share/nrn/lib/auditscripts/retrieve.sh
[40/1921] Generating share/nrn/demo/sync/start.ses
[41/1921] Generating share/nrn/lib/auditscripts/notes
[42/1921] Generating share/nrn/lib/auditscripts/saveaudit
[43/1921] Generating share/nrn/lib/auditscripts/gettarname
[44/1921] Generating share/nrn/lib/auditscripts/hocaudit.sh
[45/1921] Generating share/nrn/lib/cleanup
[46/1921] Generating share/nrn/lib/helpdict
[47/1921] Generating share/nrn/lib/hoc/atoltool.hoc
[48/1921] Generating share/nrn/lib/hoc/attshape.hoc
[49/1921] Generating share/nrn/lib/hoc/binfo.hoc
[50/1921] Generating share/nrn/lib/hoc/celbild.hoc
[51/1921] Generating share/nrn/lib/hoc/celbild/celmang.hoc
[52/1921] Generating share/nrn/lib/hoc/celbild/celbild1.hoc
[53/1921] Generating share/nrn/lib/hoc/celbild/celgeom.hoc
[54/1921] Generating share/nrn/lib/hoc/celbild/celtopol.hoc
[55/1921] Generating share/nrn/lib/hoc/chanbild.hoc
[56/1921] Generating share/nrn/lib/hoc/celbild/celmemb.hoc
[57/1921] Generating share/nrn/lib/hoc/celbild/inhomofn.hoc
[58/1921] Generating share/nrn/lib/hoc/celbild/celset.hoc
[59/1921] Generating share/nrn/lib/hoc/celbild/psubset.hoc
[60/1921] Generating share/nrn/lib/hoc/chanbild/chanbild1.hoc
[61/1921] Generating share/nrn/lib/hoc/chanbild/const.hoc
[62/1921] Generating share/nrn/lib/hoc/chanbild/exp.hoc
[63/1921] Generating share/nrn/lib/hoc/chanbild/gategui.hoc
[64/1921] Generating share/nrn/lib/hoc/chanbild/ksgate.hoc
[65/1921] Generating share/nrn/lib/hoc/chanbild/kstgui.hoc
[66/1921] Generating share/nrn/lib/hoc/chanbild/kschanbg.hoc
[67/1921] Generating share/nrn/lib/hoc/chanbild/kstrans.hoc
[68/1921] Generating share/nrn/lib/hoc/chanbild/ksstate.hoc
[69/1921] Generating share/nrn/lib/hoc/chanbild/properties.hoc
[70/1921] Generating share/nrn/lib/hoc/chanbild/sigmoid.hoc
[71/1921] Generating share/nrn/lib/hoc/chanbild/linoid.hoc
[72/1921] Generating share/nrn/lib/hoc/chanbild/table.hoc
[73/1921] Generating share/nrn/lib/hoc/corenrn.hoc
[74/1921] Generating share/nrn/lib/hoc/electrod.hoc
[75/1921] Generating share/nrn/lib/hoc/funfit.hoc
[76/1921] Generating share/nrn/lib/hoc/grapher.hoc
[77/1921] Generating share/nrn/lib/hoc/impedanc.hoc
[78/1921] Generating share/nrn/lib/hoc/family.hoc
[79/1921] Generating share/nrn/lib/hoc/gatherv.hoc
[80/1921] Generating share/nrn/lib/hoc/impedanx.hoc
[81/1921] Generating share/nrn/lib/hoc/import3d/read_morphml.hoc
[82/1921] Generating share/nrn/lib/hoc/import3d/import3d_sec.hoc
[83/1921] Generating share/nrn/lib/hoc/import3d/import3d_gui.hoc
[84/1921] Generating share/nrn/lib/hoc/import3d.hoc
[85/1921] Generating share/nrn/lib/hoc/import3d/read_nts.hoc
[86/1921] Generating share/nrn/lib/hoc/import3d/read_nlcda3.hoc
[87/1921] Generating share/nrn/lib/hoc/inserter.hoc
[88/1921] Generating share/nrn/lib/hoc/impratio.hoc
[89/1921] Generating share/nrn/lib/hoc/import3d/read_nlcda.hoc
[90/1921] Generating share/nrn/lib/hoc/import3d/read_swc.hoc
[91/1921] Generating share/nrn/lib/hoc/lincir.hoc
[92/1921] Generating share/nrn/lib/hoc/lincir/elmbase.hoc
[93/1921] Generating share/nrn/lib/hoc/lincir/lincir1.hoc
[94/1921] Generating share/nrn/lib/hoc/loadbal.hoc
[95/1921] Generating share/nrn/lib/hoc/lincir/linmech.hoc
[96/1921] Generating share/nrn/lib/hoc/logax.hoc
[97/1921] Generating share/nrn/lib/hoc/lincir/lingraph.hoc
[98/1921] Generating share/nrn/lib/hoc/macload.hoc
[99/1921] Generating share/nrn/lib/hoc/mknrndll.hoc
[100/1921] Generating share/nrn/lib/hoc/modlunit.hoc
[101/1921] Generating share/nrn/lib/hoc/mkcurve.hoc
[102/1921] Generating share/nrn/lib/hoc/movierun.hoc
[103/1921] Generating share/nrn/lib/hoc/mulfit/e_actpot.hoc
[104/1921] Generating help_data.dat
[105/1921] Generating share/nrn/lib/hoc/mulfit/clampfit.hoc
[106/1921] Generating share/nrn/lib/hoc/mulfit.hoc
[107/1921] Generating share/nrn/lib/hoc/mulfit/e_norm.hoc
[108/1921] Generating share/nrn/lib/hoc/mulfit/e_xy.hoc
[109/1921] Generating share/nrn/lib/hoc/mulfit/e_y.hoc
[110/1921] Generating share/nrn/lib/hoc/mulfit/eonefunc.hoc
[111/1921] Generating share/nrn/lib/hoc/mulfit/eparmlst.hoc
[112/1921] Generating share/nrn/lib/hoc/mulfit/eoneprim.hoc
[113/1921] Generating share/nrn/lib/hoc/mulfit/fitparm.hoc
[114/1921] Generating share/nrn/lib/hoc/mulfit/optwrap.hoc
[115/1921] Generating share/nrn/lib/hoc/mulfit/eonerun.hoc
[116/1921] Generating share/nrn/lib/hoc/mulfit/mulfit1.hoc
[117/1921] Generating share/nrn/lib/hoc/mulfit/protorun.hoc
[118/1921] Generating share/nrn/lib/hoc/mview/allcell.hoc
[119/1921] Generating share/nrn/lib/hoc/mview.hoc
[120/1921] Generating share/nrn/lib/hoc/mview/artview.hoc
[121/1921] Generating share/nrn/lib/hoc/mview/allpp.hoc
[122/1921] Generating share/nrn/lib/hoc/mview/distinctparm.hoc
[123/1921] Generating share/nrn/lib/hoc/mview/mviewgui.hoc
[124/1921] Generating share/nrn/lib/hoc/mview/mview1.hoc
[125/1921] Generating share/nrn/lib/hoc/mview/distinct.hoc
[126/1921] Generating share/nrn/lib/hoc/mview/parmsets.hoc
[127/1921] Generating share/nrn/lib/hoc/mview/parmvals.hoc
[128/1921] Generating share/nrn/lib/hoc/mview/ppanal.hoc
[129/1921] Generating share/nrn/lib/hoc/mview/mviewxml.hoc
[130/1921] Generating share/nrn/lib/hoc/mview/ncview.hoc
[131/1921] Generating share/nrn/lib/hoc/mview/rcclasses.hoc
[132/1921] Generating share/nrn/lib/hoc/mview/realcell.hoc
[133/1921] Generating share/nrn/lib/hoc/mview/secanal.hoc
[134/1921] Generating share/nrn/lib/hoc/mview/treeview.hoc
[135/1921] Generating share/nrn/lib/hoc/netbild.hoc
[136/1921] Generating share/nrn/lib/hoc/netbild/edgegui.hoc
[137/1921] Generating share/nrn/lib/hoc/netbild/netdata.hoc
[138/1921] Generating share/nrn/lib/hoc/netbild/artcel.hoc
[139/1921] Generating share/nrn/lib/hoc/netbild/grstrlst.hoc
[140/1921] Generating share/nrn/lib/hoc/netbild/netready.hoc
[141/1921] Generating share/nrn/lib/hoc/netbild/spkplot.hoc
[142/1921] Generating share/nrn/lib/hoc/netbild/syntypes.hoc
[143/1921] Generating share/nrn/lib/hoc/netbild/netgui.hoc
[144/1921] Generating share/nrn/lib/hoc/netparmpi.hoc
[145/1921] Generating share/nrn/lib/hoc/noload.hoc
[146/1921] Generating share/nrn/lib/hoc/nrngui.hoc
[147/1921] Generating share/nrn/lib/hoc/nrngui1.hoc
[148/1921] Generating share/nrn/lib/hoc/prcellstate.hoc
[149/1921] Generating share/nrn/lib/hoc/pointman.hoc
[150/1921] Generating share/nrn/lib/hoc/pointbsr.hoc
[151/1921] Generating share/nrn/lib/hoc/pcchdir.hoc
[152/1921] Generating share/nrn/lib/hoc/parcom.hoc
[153/1921] Generating share/nrn/lib/hoc/pointgrp.hoc
[154/1921] Generating share/nrn/lib/hoc/shapebox.hoc
[155/1921] Generating share/nrn/lib/hoc/showmech.hoc
[156/1921] Generating share/nrn/lib/hoc/runfit.hoc
[157/1921] Generating share/nrn/lib/hoc/single1.hoc
[158/1921] Generating share/nrn/lib/hoc/single.hoc
[159/1921] Generating share/nrn/lib/hoc/stdgui.hoc
[160/1921] Generating share/nrn/lib/hoc/stdlib.hoc
[161/1921] Generating share/nrn/lib/hoc/stdrun.hoc
[162/1921] Generating share/nrn/lib/hoc/subiter.hoc
[163/1921] Generating share/nrn/lib/hoc/thresh.hoc
[164/1921] Generating share/nrn/lib/hoc/varmeth1.hoc
[165/1921] Generating share/nrn/lib/hoc/vecwrap.hoc
[166/1921] Generating share/nrn/lib/hoc/vplay.hoc
[167/1921] Generating share/nrn/lib/nrnunits.lib
[168/1921] Generating share/nrn/lib/nrn.defaults.in
[169/1921] Generating share/nrn/lib/hoc/wingroup.hoc
[170/1921] Generating share/nrn/lib/hocload.sh
[171/1921] Generating share/nrn/lib/prologue.id
[172/1921] Generating share/nrn/lib/python/neuron/config.py
[173/1921] Generating share/nrn/lib/python/neuron/__init__.py
[174/1921] Generating share/nrn/lib/python/neuron/coreneuron.py
[175/1921] Generating share/nrn/lib/python/neuron/expect_hocerr.py
[176/1921] Generating share/nrn/lib/python/neuron/crxd/__init__.py
[177/1921] Generating share/nrn/lib/python/neuron/gui.py
[178/1921] Generating share/nrn/lib/python/neuron/gui2/plotshape.py
[179/1921] Generating share/nrn/lib/python/neuron/gui2/utilities.py
[180/1921] Generating share/nrn/lib/python/neuron/gui2/__init__.py
[181/1921] Generating share/nrn/lib/python/neuron/gui2/config.py
[182/1921] Generating share/nrn/lib/python/neuron/doc.py
[183/1921] Generating share/nrn/lib/python/neuron/gui2/rangevar.py
[184/1921] Generating share/nrn/lib/python/neuron/gui2/setup_threejs.py
[185/1921] Generating share/nrn/lib/python/neuron/hclass3.py
[186/1921] Generating share/nrn/lib/python/neuron/neuroml/__init__.py
[187/1921] Generating share/nrn/lib/python/neuron/neuroml/biophysics.py
[188/1921] Generating share/nrn/lib/python/neuron/neuroml/metadata.py
[189/1921] Generating share/nrn/lib/python/neuron/neuroml/morphml.py
[190/1921] Generating share/nrn/lib/python/neuron/neuroml/neuroml.py
[191/1921] Generating share/nrn/lib/python/neuron/neuroml/xml2nrn.py
[192/1921] Generating share/nrn/lib/python/neuron/psection.py
[193/1921] Generating share/nrn/lib/python/neuron/neuroml/rdxml.py
[194/1921] Generating share/nrn/lib/python/neuron/nonvint_block_supervisor.py
[195/1921] Generating share/nrn/lib/python/neuron/rxd/__init__.py
[196/1921] Generating share/nrn/lib/python/neuron/rxd/export.py
[197/1921] Generating share/nrn/lib/python/neuron/rxd/dimension3.py
[198/1921] Generating share/nrn/lib/python/neuron/rxd/generalizedReaction.py
[199/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/__init__.py
[200/1921] Generating share/nrn/lib/python/neuron/rxd/constants.py
[201/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/FullJoinMorph.py
[202/1921] Generating share/nrn/lib/python/neuron/rxd/geometry.py
[203/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/GeneralizedVoxelization.py
[204/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/ctng.pyx
[205/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/scalarField.py
[206/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/surface.py
[207/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/simplevolume_helper.py
[208/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/graphicsPrimitives.pyx
[209/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/surface_a.py
[210/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/triangularMesh.py
[211/1921] Generating share/nrn/lib/python/neuron/rxd/gui.py
[212/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/surfaces.pyx
[213/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/voxelize.py
[214/1921] Generating share/nrn/lib/python/neuron/rxd/initializer.py
[215/1921] Generating share/nrn/lib/python/neuron/rxd/multiCompartmentReaction.py
[216/1921] Generating share/nrn/lib/python/neuron/rxd/node.py
[217/1921] Generating share/nrn/lib/python/neuron/rxd/geometry3d/voxelize2.py
[218/1921] Generating share/nrn/lib/python/neuron/rxd/nodelist.py
[219/1921] Generating share/nrn/lib/python/neuron/rxd/options.py
[220/1921] Generating share/nrn/lib/python/neuron/rxd/plugins.py
[221/1921] Generating share/nrn/lib/python/neuron/rxd/rangevar.py
[222/1921] Generating share/nrn/lib/python/neuron/rxd/reaction.py
[223/1921] Generating share/nrn/lib/python/neuron/rxd/region.py
[224/1921] Generating share/nrn/lib/python/neuron/rxd/rate.py
[225/1921] Generating share/nrn/lib/python/neuron/rxd/rxd.py
[226/1921] Generating share/nrn/lib/python/neuron/rxd/rxdException.py
[227/1921] Generating share/nrn/lib/python/neuron/rxd/rxdmath.py
[228/1921] Generating share/nrn/lib/python/neuron/rxd/rxdsection.py
[229/1921] Generating share/nrn/lib/python/neuron/rxd/section1d.py
[230/1921] Generating share/nrn/lib/python/neuron/rxd/species.py
[231/1921] Generating share/nrn/lib/python/neuron/rxdtests/do_test.py
[232/1921] Generating share/nrn/lib/python/neuron/rxdtests/run_all.py
[233/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/include_flux3d_cvode.py
[234/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/multicompartment_reactions.py
[235/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/pure_diffusion_3d_cvode.py
[236/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/circadian_rhythm.py
[237/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/include_flux3d.py
[238/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/torun.txt
[239/1921] Generating share/nrn/lib/python/neuron/rxdtests/readme.txt
[240/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/pure_diffusion_3d.py
[241/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/ca_pump.py
[242/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/IraHH.py
[243/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/c91662.swc
[244/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/cabuf_fixed_step.py
[245/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/cabuf.py
[246/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_before_sections.py
[247/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_example_cvode.py
[248/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_example.py
[249/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_include_flux_cvode.py
[250/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_multi_example.py
[251/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_include_flux.py
[252/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_multi_example_cvode.py
[253/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/pump.mod
[254/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_cvode.py
[255/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/torun.txt
[256/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh.py
[257/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_morph.py
[258/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_param_cvode.py
[259/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_param.py
[260/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid.py
[261/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_change_nthread.py
[262/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_cvode.py
[263/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_cvode_change_nthread.py
[264/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/pure_diffusion_hybrid.py
[265/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/torun.txt
[266/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/pure_diffusion_hybrid_cvode.py
[267/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions.py
[268/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_mebrane_mismatch.py
[269/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions_del.py
[270/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/include_flux.py
[271/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions_with_v.py
[272/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/nodes_update.py
[273/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/include_flux_cvode.py
[274/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/pure_diffusion.py
[275/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/pure_diffusion_cvode.py
[276/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/react_region_specified.py
[277/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_param_test.py
[278/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_test.py
[279/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/verify_no_initialization_order_issue.py
[280/1921] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_null_dest.py
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[527/1921] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Rand.cpp.o
[528/1921] [FLEX][modlunitlexer] Building scanner with flex 2.6.4
[529/1921] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RNG.cpp.o
[530/1921] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Uniform.cpp.o
[531/1921] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Weibull.cpp.o
[532/1921] [FLEX][nocmodllexer] Building scanner with flex 2.6.4
[533/1921] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[534/1921] [BISON][modlunitparser] Building parser with bison 3.8.2
[535/1921] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnran123.cpp.o
[536/1921] [BISON][ocparser] Building parser with bison 3.8.2
../src/oc/parse.ypp: warning: 108 shift/reduce conflicts [-Wconflicts-sr]
../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[537/1921] Linking CXX static library lib/libnrngnu.a
[538/1921] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[539/1921] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/json_printer.cpp.o
[540/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/consist.cpp.o
[541/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/init.cpp.o
[542/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/io.cpp.o
[543/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/declare.cpp.o
[544/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/model.cpp.o
[545/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/kinunit.cpp.o
[546/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/passn.cpp.o
[547/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/nrnunit.cpp.o
[548/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/list.cpp.o
[549/1921] cd /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[550/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/version.cpp.o
[551/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units1.cpp.o
[552/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/symbol.cpp.o
[553/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units.cpp.o
[554/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/lex.cpp.o
[555/1921] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/corenrn_parameters.cpp.o
[556/1921] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/parse1.cpp.o
[557/1921] Linking CXX executable bin/modlunit
[558/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/discrete.cpp.o
[559/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/consist.cpp.o
[560/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/deriv.cpp.o
[561/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/init.cpp.o
[562/1921] Linking CXX static library lib/libcoreneuron-core.a
[563/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/io.cpp.o
[564/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/list.cpp.o
[565/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/noccout.cpp.o
[566/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/kinetic.cpp.o
[567/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/parsact.cpp.o
[568/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/netrec_discon.cpp.o
[569/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/simultan.cpp.o
[570/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/symbol.cpp.o
[571/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/solve.cpp.o
[572/1921] Building CXX object external/nmodl/src/pybind/CMakeFiles/pyembed.dir/pyembed.cpp.o
[573/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/modlunit/units.cpp.o
[574/1921] Generating ../../share/nrn/nrnmain.cpp
[575/1921] Generating ../../include/nrnmpiuse.h
[576/1921] Generating ../../include/nrncvode/nrnneosm.h
[577/1921] Generating ../oc/hocusr.h
[578/1921] Generating ../../include/nrnconf.h
[579/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/version.cpp.o
[580/1921] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o
[581/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/catch_chronometer.cpp.o
[582/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/nocpout.cpp.o
[583/1921] Linking CXX shared library lib/librxdmath.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[584/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_benchmark_function.cpp.o
[585/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o
[586/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o
[587/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generator_exception.cpp.o
[588/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o
[589/1921] Building CXX object external/nmodl/src/pybind/CMakeFiles/pywrapper.dir/wrapper.cpp.o
[590/1921] Linking CXX static library lib/libpywrapper.a
[591/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_analyse.cpp.o
[592/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_run_for_at_least.cpp.o
[593/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generators.cpp.o
[594/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_stats.cpp.o
[595/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generators_random.cpp.o
[596/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_automake.cpp.o
[597/1921] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/logger.cpp.o
[598/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_common_base.cpp.o
[599/1921] Linking CXX static library lib/libutil.a
[600/1921] -- NMODL : GENERATING NMODL LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/nmodl.ll:503: warning, -s option given but default rule can be matched
[601/1921] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! --
[602/1921] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/diffeq.ll:100: warning, -s option given but default rule can be matched
[603/1921] -- NMODL : GENERATING C(11) LEXER WITH FLEX! --
[604/1921] -- NMODL : GENERATING UNIT LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched
[605/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_event_listener.cpp.o
[606/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_compact.cpp.o
[607/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_cumulative_base.cpp.o
[608/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_console.cpp.o
[609/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_multi.cpp.o
[610/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_helpers.cpp.o
[611/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_junit.cpp.o
[612/1921] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_json.cpp.o
[613/1921] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_transform_visitor.cpp.o
[614/1921] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_acc_visitor.cpp.o
[615/1921] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_info.cpp.o
[616/1921] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_utils.cpp.o
[617/1921] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/modl.cpp.o
[618/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/modtoken.cpp.o
[619/1921] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_helper_visitor.cpp.o
[620/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/token_mapping.cpp.o
[621/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/verbatim_lexer.cpp.o
[622/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_utils.cpp.o
[623/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/diffeq_base_lexer.cpp.o
[624/1921] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_compatibility_visitor.cpp.o
[625/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/c11_base_lexer.cpp.o
[626/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/unit_base_lexer.cpp.o
[627/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_driver.cpp.o
[628/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_context.cpp.o
[629/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_base_lexer.cpp.o
[630/1921] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_neuron_cpp_visitor.cpp.o
[631/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/verbatim_parser.cpp.o
[632/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit_driver.cpp.o
[633/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c11_driver.cpp.o
[634/1921] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_cpp_visitor.cpp.o
[635/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq/diffeq_parser.cpp.o
[636/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c/c11_parser.cpp.o
[637/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit/unit_parser.cpp.o
[638/1921] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol_properties.cpp.o
[639/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/units/units.cpp.o
[640/1921] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_coreneuron_cpp_visitor.cpp.o
[641/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl_driver.cpp.o
[642/1921] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol_table.cpp.o
[643/1921] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol.cpp.o
[644/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/function_callpath_visitor.cpp.o
[645/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/global_var_visitor.cpp.o
[646/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/indexedname_visitor.cpp.o
[647/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/after_cvode_to_cnexp_visitor.cpp.o
[648/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/implicit_argument_visitor.cpp.o
[649/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/constant_folder_visitor.cpp.o
[650/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl/nmodl_parser.cpp.o
[651/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/index_remover.cpp.o
[652/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/local_to_assigned_visitor.cpp.o
[653/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/defuse_analyze_visitor.cpp.o
[654/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/local_var_rename_visitor.cpp.o
[655/1921] Building CXX object external/nmodl/src/CMakeFiles/nmodl.dir/main.cpp.o
[656/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/perf_visitor.cpp.o
[657/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/loop_unroll_visitor.cpp.o
[658/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/localize_visitor.cpp.o
[659/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/neuron_solve_visitor.cpp.o
[660/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/solve_block_visitor.cpp.o
[661/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/inline_visitor.cpp.o
[662/1921] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/ast/ast.cpp.o
[663/1921] Linking CXX static library lib/liblexer.a
[664/1921] Linking CXX static library lib/libsymtab.a
[665/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/semantic_analysis_visitor.cpp.o
[666/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/var_usage_visitor.cpp.o
[667/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/kinetic_block_visitor.cpp.o
[668/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_visitor.cpp.o
[669/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/rename_visitor.cpp.o
[670/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/units_visitor.cpp.o
[671/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/ast_visitor.cpp.o
[672/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/steadystate_visitor.cpp.o
[673/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/lookup_visitor.cpp.o
[674/1921] Linking CXX static library lib/libpyembed.a
[675/1921] Linking CXX executable bin/nocmodl
[676/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/json_visitor.cpp.o
[677/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_var_rename_visitor.cpp.o
[678/1921] Generating ../nrnoc/expsyn.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/expsyn.cpp
Thread Safe
[679/1921] Generating ../nrnoc/exp2syn.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp
Thread Safe
[680/1921] Generating ../nrnoc/apcount.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/apcount.cpp
Thread Safe
[681/1921] Generating ../nrnoc/feature.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/feature.cpp
Notice: VERBATIM blocks are not thread safe
[682/1921] Generating ../nrnoc/hh.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/hh.cpp
Thread Safe
    [683/1921] Generating ../nrnoc/intfire1.cpp

Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/intfire1.cpp
Thread Safe
[684/1921] Generating ../nrnoc/intfire2.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/intfire2.cpp
Thread Safe
[685/1921] Generating ../nrnoc/intfire4.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/intfire4.cpp
Thread Safe
[686/1921] Generating ../nrnoc/netstim.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/netstim.cpp
Thread Safe
[687/1921] Generating ../nrnoc/passive.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/passive.cpp
Thread Safe
[688/1921] Generating ../nrnoc/pattern.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/pattern.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[689/1921] Generating ../nrnoc/oclmp.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/oclmp.cpp
Thread Safe
[690/1921] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/visitor_utils.cpp.o
[691/1921] Generating ../nrnoc/ppmark.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/ppmark.cpp
Thread Safe
[692/1921] Generating ../nrnoc/stim.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/stim.cpp
Thread Safe
[693/1921] Generating ../nrnoc/svclmp.cpp
Translating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/src/nrnoc/svclmp.cpp
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[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
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[1162/1921] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/generic_data_handle.cpp.o
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[1172/1921] Generating ../../compare_test_results.py
[1173/1921] Generating ../tests/ringtest/reference_data/spk1.100ms.std.ref
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ld: warning: -undefined dynamic_lookup may not work with chained fixups
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[1241/1921] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand.mod
[1242/1921] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand_pp.mod
[1243/1921] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand_art.mod
[1244/1921] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata.inc
[1245/1921] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata.mod
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[1247/1921] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_ppts.mod
[1248/1921] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_ts.mod
[1249/1921] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod
[1250/1921] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod
[1251/1921] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod
[1252/1921] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod
[1253/1921] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod
[1254/1921] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_BUILD=0
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:creating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:creating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:creating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/coreneuron_available.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:creating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:creating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:creating /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:building 'neuron.hoc' extension
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -DCORENRN_BUILD=0=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../
ld: warning: -undefined dynamic_lookup may not work with chained fixups
INFO:root:running build_scripts
INFO:root:creating build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755
[1255/1921] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod
[1256/1921] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod
[1257/1921] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod
[1258/1921] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod
[1259/1921] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod
[1260/1921] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod
[1261/1921] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod
[1262/1921] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/node.cpp.o
[1263/1921] Linking CXX executable bin/test/testneuron
[1264/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.inc
[1265/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.mod
[1266/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial_pp.mod
[1267/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/bacur.mod
[1268/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/banocur.mod
[1269/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/fornetcon.mod
[1270/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/green.mod
[1271/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/invlfire.mod
[1272/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/natrans.mod
[1273/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/netmove.mod
[1274/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/noisychan.mod
[1275/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/red.mod
[1276/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/sample.mod
[1277/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/unitstest.mod
[1278/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/version_macros.mod
[1279/1921] Building special[-core] for test group datahandle
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453
cfiles =
Mod files: "./opaque_token.mod" "./ptr.mod"

MODOBJS= ./opaque_token.o ./ptr.o
 -> NMODL .././ptr.mod
 -> Compiling mod_func.cpp
 -> NMODL .././opaque_token.mod
Translating opaque_token.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp
Translating ptr.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp
Notice: Use of POINTER is not thread safe.
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp
Notice: VERBATIM blocks are not thread safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./special" LDFLAGS are:            /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1280/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange.mod
[1281/1921] Generating datahandle/datahandle_tests/test/datahandle/test_1.py
[1282/1921] Generating datahandle/datahandle_tests/test/datahandle/test_token.py
[1283/1921] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange2.mod
[1284/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod
[1285/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod
[1286/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
[1287/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
[1288/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod
[1289/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod
[1290/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
[1291/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod
[1292/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
[1293/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
[1294/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
[1295/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod
[1296/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
[1297/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod
[1298/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod
[1299/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod
[1300/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod
[1301/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod
[1302/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod
[1303/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod
[1304/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod
[1305/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
[1306/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod
[1307/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
[1308/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod
[1309/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod
[1310/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod
[1311/1921] Building special[-core] for test group coverage_tests
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51
cfiles =
Mod files: "./ppxsrc.mod"

MODOBJS= ./ppxsrc.o
 -> Compiling mod_func.cpp
 -> NMODL .././ppxsrc.mod
Translating ppxsrc.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./special" LDFLAGS are:            /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1312/1921] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod
[1313/1921] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json
[1314/1921] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py
[1315/1921] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod
[1316/1921] Building special[-core] for test group pytest
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c
cfiles =
Mod files: "./mcna.mod"

MODOBJS= ./mcna.o
 -> NMODL .././mcna.mod
 -> Compiling mod_func.cpp
Translating mcna.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./special" LDFLAGS are:            /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1317/1921] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json
[1318/1921] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py
[1319/1921] Generating ../../nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/halfgap.mod
[1320/1921] Building special[-core] for test group parallel
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
 -> NMODL .././name_clashes.mod
 -> NMODL .././gap.mod
 -> Compiling mod_func.cpp
 -> NMODL .././follower.mod
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
Thread Safe
 -> NMODL .././unitstest.mod
Translating follower.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Thread Safe
 -> NMODL .././version_macros.mod
Translating gap.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./special" LDFLAGS are:            /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1321/1921] Generating parallel/subworld/test/parallel_tests/test_subworld.py
[1322/1921] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py
[1323/1921] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py
[1324/1921] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py
[1325/1921] Generating parallel/bas/test/parallel_tests/test_bas.py
[1326/1921] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py
[1327/1921] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json
[1328/1921] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py
[1329/1921] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
[1330/1921] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod
[1331/1921] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod
[1332/1921] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod
[1333/1921] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod
[1334/1921] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
[1335/1921] Building special[-core] for test group hoctests
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad
cfiles =
Mod files: "./atest.mod" "./rand.mod" "./rand_art.mod" "./rand_pp.mod" "./sdata.mod" "./sdata_pp.mod" "./sdata_ppts.mod" "./sdata_ts.mod"

MODOBJS= ./atest.o ./rand.o ./rand_art.o ./rand_pp.o ./sdata.o ./sdata_pp.o ./sdata_ppts.o ./sdata_ts.o
 -> Compiling mod_func.cpp
 -> NMODL .././atest.mod
 -> NMODL .././rand.mod
 -> NMODL .././rand_art.mod
Translating atest.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp
Thread Safe
 -> NMODL .././rand_pp.mod
Translating rand.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp
Translating rand_art.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp
Thread Safe
 -> NMODL .././sdata.mod
Thread Safe
 -> NMODL .././sdata_pp.mod
Translating sdata_pp.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././sdata_ppts.mod
Translating sdata.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Translating rand_pp.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp
Thread Safe
 -> NMODL .././sdata_ts.mod
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp
Translating sdata_ppts.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp
INCLUDEing sdata.inc
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp
Translating sdata_ts.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp
INCLUDEing sdata.inc
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./special" LDFLAGS are:            /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1336/1921] Generating hoctests/test_loadbal_hoc/expect_err.hoc
[1337/1921] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc
[1338/1921] Generating hoctests/test_random_hoc/expect_err.hoc
[1339/1921] Generating hoctests/test_random_hoc/tests/test_random.hoc
[1340/1921] Generating hoctests/test_random_hoc/tests/test_random.json
[1341/1921] Generating hoctests/perf1_hoc/expect_err.hoc
[1342/1921] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc
[1343/1921] Generating hoctests/test1_hoc/expect_err.hoc
[1344/1921] Generating hoctests/test1_hoc/vardimtests/test1.hoc
[1345/1921] Generating hoctests/test2_hoc/expect_err.hoc
[1346/1921] Generating hoctests/test2_hoc/vardimtests/test2.hoc
[1347/1921] Generating hoctests/test3_hoc/expect_err.hoc
[1348/1921] Generating hoctests/test3_hoc/vardimtests/test3.hoc
[1349/1921] Generating hoctests/test4_hoc/expect_err.hoc
[1350/1921] Generating hoctests/test4_hoc/vardimtests/test4.hoc
[1351/1921] Generating hoctests/test5_hoc/expect_err.hoc
[1352/1921] Generating hoctests/test5_hoc/vardimtests/test5.hoc
[1353/1921] Generating hoctests/test6_hoc/expect_err.hoc
[1354/1921] Generating hoctests/test6_hoc/vardimtests/test6.hoc
[1355/1921] Generating hoctests/test7_hoc/expect_err.hoc
[1356/1921] Generating hoctests/test7_hoc/vardimtests/test7.hoc
[1357/1921] Generating hoctests/test8_hoc/expect_err.hoc
[1358/1921] Generating hoctests/test8_hoc/vardimtests/test8.hoc
[1359/1921] Generating hoctests/test9_hoc/expect_err.hoc
[1360/1921] Generating hoctests/test9_hoc/vardimtests/test9.hoc
[1361/1921] Generating hoctests/test_bbss_py/tests/test_bbss.py
[1362/1921] Generating hoctests/test_cvinterp_py/tests/test_cvinterp.py
[1363/1921] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py
[1364/1921] Generating hoctests/test_hocmech_py/tests/test_hocmech.py
[1365/1921] Generating hoctests/test_kschan_py/tests/test_kschan.json
[1366/1921] Generating hoctests/test_kschan_py/tests/test_kschan.py
[1367/1921] Generating hoctests/test_legacy_setpointer_py/tests/test_legacy_setpointer.py
[1368/1921] Generating hoctests/test_mechfunc_py/tests/test_mechfunc.py
[1369/1921] Generating hoctests/test_mechstd_py/tests/test_mechstd.py
[1370/1921] Generating hoctests/test_mode_py/tests/test_mode.py
[1371/1921] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json
[1372/1921] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py
[1373/1921] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py
[1374/1921] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.json
[1375/1921] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.py
[1376/1921] Generating hoctests/test_random_py/tests/test_random.json
[1377/1921] Generating hoctests/test_random_py/tests/test_random.py
[1378/1921] Generating hoctests/test_setdata_py/tests/test_setdata.py
[1379/1921] Generating hoctests/test_shape_py/tests/test_shape.py
[1380/1921] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py
[1381/1921] Generating hoctests/test1_py/vardimtests/test1.py
[1382/1921] Generating hoctests/test2_py/vardimtests/test2.py
[1383/1921] Generating hoctests/test9_py/vardimtests/test9.py
[1384/1921] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfire.mod
[1385/1921] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfiresha.mod
[1386/1921] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfirestats.mod
[1387/1921] Building special[-core] for test group nmodl_tests
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5
cfiles =
Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod"

MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o
 -> Compiling mod_func.cpp
 -> NMODL .././cadif.mod
 -> NMODL .././disc.mod
 -> NMODL .././fornetcon.mod
Translating cadif.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Translating disc.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
Thread Safe
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
Thread Safe
 -> NMODL .././hhwatch.mod
 -> NMODL .././k3st.mod
Notice: DISCRETE is not thread safe.
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././table.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
Thread Safe
Translating k3st.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
 -> NMODL .././variabletypes.mod
NEURON's CVode method ignores conservation
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Translating table.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
Translating variabletypes.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/./special" LDFLAGS are:            /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1388/1921] Generating nmodl_tests/test_table/test/nmodl/test_table.py
[1389/1921] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py
[1390/1921] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py
[1391/1921] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py
[1392/1921] Generating nmodl_tests/test_random/test/nmodl/test_random.py
[1393/1921] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.mod
[1394/1921] Building special[-core] for test group external_ringtest_nrn
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295
cfiles =
Mod files: "./halfgap.mod"

MODOBJS= ./halfgap.o
 -> Compiling mod_func.cpp
 -> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./special" LDFLAGS are:            /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1395/1921] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.py
[1396/1921] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py
[1397/1921] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py
[1398/1921] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py
[1399/1921] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py
[1400/1921] Generating ../../external_ringtest_nrn/optim_node_order/args.py
[1401/1921] Generating ../../external_ringtest_nrn/optim_node_order/cell.hoc
[1402/1921] Generating ../../external_ringtest_nrn/optim_node_order/celluniform.hoc
[1403/1921] Generating ../../external_ringtest_nrn/optim_node_order/commonutils.py
[1404/1921] Generating ../../external_ringtest_nrn/optim_node_order/ranparm.py
[1405/1921] Generating ../../external_ringtest_nrn/optim_node_order/ring.py
[1406/1921] Generating ../../external_ringtest_nrn/optim_node_order/ringtest.py
[1407/1921] Generating ../../external_ringtest_nrn/optim_node_order/ringuniform.py
[1408/1921] Generating ../../external_ringtest_nrn/optim_node_order/settings.py
[1409/1921] Generating ../../external_ringtest_nrn/optim_node_order/test_optimize_node_order.py
[1410/1921] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"

MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
 -> Compiling mod_func.cpp
 -> NMODL ../camchan.mod
 -> NMODL ../cabpump.mod
 -> NMODL ../cachan1.mod
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL ../capump.mod
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Thread Safe
 -> NMODL ../invlfire.mod
Translating camchan.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
Thread Safe
 -> NMODL ../khhchan.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
Translating capump.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
Thread Safe
Thread Safe
 -> NMODL ../nacaex.mod
 -> NMODL ../nachan.mod
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
 -> NMODL ../release.mod
Translating nachan.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Translating release.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./special" LDFLAGS are:            /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1411/1921] Building special[-core] for test group pytest_coreneuron
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././follower.mod
 -> NMODL .././gap.mod
 -> NMODL .././name_clashes.mod
Translating follower.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Thread Safe
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
 -> NMODL .././unitstest.mod
Thread Safe
Translating gap.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
 -> NMODL .././version_macros.mod
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
Thread Safe
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./special" LDFLAGS are:            /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1412/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py
[1413/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py
[1414/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py
[1415/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py
[1416/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py
[1417/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_coreneuron_configuration.py
[1418/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py
[1419/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py
[1420/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_imem.py
[1421/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py
[1422/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py
[1423/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py
[1424/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py
[1425/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py
[1426/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py
[1427/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py
[1428/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json
[1429/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py
[1430/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py
[1431/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py
[1432/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py
[1433/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py
[1434/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py
[1435/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py
[1436/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py
[1437/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py
[1438/1921] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py
[1439/1921] Building special[-core] for test group external_ringtest
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff
cfiles =
Mod files: "./halfgap.mod"

MODOBJS= ./halfgap.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./special" LDFLAGS are:            /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1440/1921] Generating ../../external_ringtest/neuron/args.py
[1441/1921] Generating ../../external_ringtest/neuron/celluniform.hoc
[1442/1921] Generating ../../external_ringtest/neuron/cell.hoc
[1443/1921] Generating ../../external_ringtest/neuron/ranparm.py
[1444/1921] Generating ../../external_ringtest/neuron/commonutils.py
[1445/1921] Generating ../../external_ringtest/neuron/ring.py
[1446/1921] Generating ../../external_ringtest/neuron/ringuniform.py
[1447/1921] Generating ../../external_ringtest/neuron/ringtest.py
[1448/1921] Generating ../../external_ringtest/neuron/settings.py
[1449/1921] Generating ../../external_ringtest/neuron/test_optimize_node_order.py
[1450/1921] Generating ../../external_ringtest/neuron_mpi/args.py
[1451/1921] Generating ../../external_ringtest/neuron_mpi/cell.hoc
[1452/1921] Generating ../../external_ringtest/neuron_mpi/commonutils.py
[1453/1921] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc
[1454/1921] Generating ../../external_ringtest/neuron_mpi/ranparm.py
[1455/1921] Generating ../../external_ringtest/neuron_mpi/ringtest.py
[1456/1921] Generating ../../external_ringtest/neuron_mpi/ring.py
[1457/1921] Generating ../../external_ringtest/neuron_mpi/ringuniform.py
[1458/1921] Generating ../../external_ringtest/neuron_mpi/settings.py
[1459/1921] Generating ../../external_ringtest/neuron_mpi/test_optimize_node_order.py
[1460/1921] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc
[1461/1921] Generating ../../external_ringtest/neuron_mpi_python/args.py
[1462/1921] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc
[1463/1921] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py
[1464/1921] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py
[1465/1921] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py
[1466/1921] Generating ../../external_ringtest/neuron_mpi_python/ring.py
[1467/1921] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py
[1468/1921] Generating ../../external_ringtest/neuron_mpi_python/settings.py
[1469/1921] Generating ../../external_ringtest/neuron_mpi_python/test_optimize_node_order.py
[1470/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py
[1471/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc
[1472/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc
[1473/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py
[1474/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py
[1475/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py
[1476/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py
[1477/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py
[1478/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py
[1479/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/test_optimize_node_order.py
[1480/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc
[1481/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py
[1482/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc
[1483/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py
[1484/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py
[1485/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py
[1486/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py
[1487/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py
[1488/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py
[1489/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi/test_optimize_node_order.py
[1490/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py
[1491/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc
[1492/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc
[1493/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py
[1494/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py
[1495/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py
[1496/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py
[1497/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py
[1498/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py
[1499/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/test_optimize_node_order.py
[1500/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py
[1501/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc
[1502/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc
[1503/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py
[1504/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py
[1505/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py
[1506/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py
[1507/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py
[1508/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py
[1509/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/test_optimize_node_order.py
[1510/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py
[1511/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc
[1512/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc
[1513/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py
[1514/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py
[1515/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py
[1516/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py
[1517/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py
[1518/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py
[1519/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/test_optimize_node_order.py
[1520/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc
[1521/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py
[1522/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py
[1523/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc
[1524/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py
[1525/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py
[1526/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py
[1527/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py
[1528/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py
[1529/1921] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/test_optimize_node_order.py
[1530/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/args.py
[1531/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/celluniform.hoc
[1532/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/cell.hoc
[1533/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/commonutils.py
[1534/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ranparm.py
[1535/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ring.py
[1536/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ringuniform.py
[1537/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ringtest.py
[1538/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/settings.py
[1539/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/test_optimize_node_order.py
[1540/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/args.py
[1541/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/cell.hoc
[1542/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/celluniform.hoc
[1543/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/commonutils.py
[1544/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ranparm.py
[1545/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ring.py
[1546/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ringuniform.py
[1547/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ringtest.py
[1548/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/settings.py
[1549/1921] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/test_optimize_node_order.py
[1550/1921] Building special[-core] for test group tqperf
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951
cfiles =
Mod files: "./invlfire.mod" "./invlfiresha.mod" "./invlfirestats.mod"

MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build INCFLAGS=-I/opt/homebrew/Cellar/openssl@3/3.2.0_1/include LINKFLAGS=/opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
arm64/corenrn/mod2c/invlfiresha.cpp:313:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Init((SHA_CTX*)(*ctx));
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
arm64/corenrn/mod2c/invlfiresha.cpp:318:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Update((SHA_CTX*)ctx, data, len);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
arm64/corenrn/mod2c/invlfiresha.cpp:329:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Final(u.md, (SHA_CTX*)ctx);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
3 warnings generated.
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././invlfire.mod
 -> NMODL .././invlfiresha.mod
 -> NMODL .././invlfirestats.mod
Translating invlfiresha.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp
Translating invlfirestats.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:369:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Init((SHA_CTX*)(*ctx));
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:374:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Update((SHA_CTX*)ctx, data, len);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:385:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Final(u.md, (SHA_CTX*)ctx);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
3 warnings generated.
 => LINKING shared library "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/./special" LDFLAGS are:    /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib        /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1551/1921] Generating ../../tqperf/coreneuron_special/extracell.hoc
[1552/1921] Generating ../../tqperf/coreneuron_special/init.hoc
[1553/1921] Generating ../../tqperf/coreneuron_special/invl.hoc
[1554/1921] Generating ../../tqperf/coreneuron_special/mosinit.hoc
[1555/1921] Generating ../../tqperf/coreneuron_special/movie.hoc
[1556/1921] Generating ../../tqperf/coreneuron_special/net.hoc
[1557/1921] Generating ../../tqperf/coreneuron_special/perfrun.hoc
[1558/1921] Generating ../../tqperf/coreneuron_special/param.hoc
[1559/1921] Generating ../../tqperf/coreneuron_special/pltq.hoc
[1560/1921] Generating ../../tqperf/coreneuron_special/run.hoc
[1561/1921] Generating ../../tqperf/coreneuron_special/runs.hoc
[1562/1921] Generating ../../tqperf/coreneuron_special/randist.hoc
[1563/1921] Generating ../../tqperf/coreneuron_special/run128.hoc
[1564/1921] Generating ../../tqperf/coreneuron_special/spkplt.hoc
[1565/1921] Generating ../../tqperf/coreneuron_special/spike2file.hoc
[1566/1921] Generating ../../tqperf/coreneuron_special/table.hoc
[1567/1921] Generating ../../tqperf/coreneuron_special/tperfnew.hoc
[1568/1921] Generating ../../tqperf/coreneuron_python/extracell.hoc
[1569/1921] Generating ../../tqperf/coreneuron_special/test1.py
[1570/1921] Generating ../../tqperf/coreneuron_special/tperf.hoc
[1571/1921] Generating ../../tqperf/coreneuron_python/init.hoc
[1572/1921] Generating ../../tqperf/coreneuron_python/net.hoc
[1573/1921] Generating ../../tqperf/coreneuron_python/invl.hoc
[1574/1921] Generating ../../tqperf/coreneuron_python/mosinit.hoc
[1575/1921] Generating ../../tqperf/coreneuron_python/param.hoc
[1576/1921] Generating ../../tqperf/coreneuron_python/movie.hoc
[1577/1921] Generating ../../tqperf/coreneuron_python/perfrun.hoc
[1578/1921] Generating ../../tqperf/coreneuron_python/randist.hoc
[1579/1921] Generating ../../tqperf/coreneuron_python/pltq.hoc
[1580/1921] Generating ../../tqperf/coreneuron_python/run.hoc
[1581/1921] Generating ../../tqperf/coreneuron_python/run128.hoc
[1582/1921] Generating ../../tqperf/coreneuron_python/runs.hoc
[1583/1921] Generating ../../tqperf/coreneuron_python/spike2file.hoc
[1584/1921] Generating ../../tqperf/coreneuron_python/spkplt.hoc
[1585/1921] Generating ../../tqperf/coreneuron_python/tperf.hoc
[1586/1921] Generating ../../tqperf/coreneuron_python/table.hoc
[1587/1921] Generating ../../tqperf/coreneuron_python/test1.py
[1588/1921] Generating ../../tqperf/coreneuron_python/tperfnew.hoc
[1589/1921] Building special[-core] for test group testcorenrn_bbcore
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876
cfiles =
Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod"

MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././Gfluct3.mod
 -> NMODL .././hhderiv.mod
 -> NMODL .././hhkin.mod
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
Translating hhkin.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
Translating hhderiv.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
Thread Safe
Thread Safe
Thread Safe
 -> NMODL .././hhwatch.mod
 -> NMODL .././nacum.mod
 -> NMODL .././vecevent.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
Thread Safe
Translating nacum.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
Thread Safe
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/./special" LDFLAGS are:            /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1590/1921] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc
[1591/1921] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc
[1592/1921] Generating ../../testcorenrn_bbcore/neuron/common.hoc
[1593/1921] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc
[1594/1921] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc
[1595/1921] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc
[1596/1921] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc
[1597/1921] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc
[1598/1921] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1599/1921] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc
[1600/1921] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc
[1601/1921] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc
[1602/1921] Generating ../../testcorenrn_conc/neuron/common.hoc
[1603/1921] Generating ../../testcorenrn_conc/neuron/defvar.hoc
[1604/1921] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc
[1605/1921] Generating ../../testcorenrn_conc/neuron/testconc.hoc
[1606/1921] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc
[1607/1921] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc
[1608/1921] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc
[1609/1921] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc
[1610/1921] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1611/1921] Generating ../../testcorenrn_deriv/neuron/common.hoc
[1612/1921] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc
[1613/1921] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc
[1614/1921] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc
[1615/1921] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc
[1616/1921] Generating ../../testcorenrn_deriv/neuron/defvar.hoc
[1617/1921] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc
[1618/1921] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc
[1619/1921] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc
[1620/1921] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1621/1921] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc
[1622/1921] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc
[1623/1921] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc
[1624/1921] Generating ../../testcorenrn_gf/neuron/testgf.hoc
[1625/1921] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc
[1626/1921] Generating ../../testcorenrn_gf/neuron/defvar.hoc
[1627/1921] Generating ../../testcorenrn_gf/neuron/common.hoc
[1628/1921] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc
[1629/1921] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc
[1630/1921] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc
[1631/1921] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc
[1632/1921] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1633/1921] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc
[1634/1921] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc
[1635/1921] Generating ../../testcorenrn_kin/neuron/common.hoc
[1636/1921] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc
[1637/1921] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc
[1638/1921] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc
[1639/1921] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc
[1640/1921] Generating ../../testcorenrn_kin/neuron/defvar.hoc
[1641/1921] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc
[1642/1921] Generating ../../testcorenrn_kin/neuron/testkin.hoc
[1643/1921] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc
[1644/1921] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1645/1921] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc
[1646/1921] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc
[1647/1921] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc
[1648/1921] Generating ../../testcorenrn_patstim/neuron/common.hoc
[1649/1921] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc
[1650/1921] Generating ../../testcorenrn_patstim/neuron/defvar.hoc
[1651/1921] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc
[1652/1921] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc
[1653/1921] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc
[1654/1921] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc
[1655/1921] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc
[1656/1921] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc
[1657/1921] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc
[1658/1921] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc
[1659/1921] Generating ../../testcorenrn_vecplay/neuron/common.hoc
[1660/1921] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc
[1661/1921] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc
[1662/1921] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc
[1663/1921] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc
[1664/1921] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc
[1665/1921] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc
[1666/1921] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc
[1667/1921] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc
[1668/1921] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1669/1921] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc
[1670/1921] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc
[1671/1921] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc
[1672/1921] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc
[1673/1921] Generating ../../testcorenrn_vecevent/neuron/common.hoc
[1674/1921] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc
[1675/1921] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc
[1676/1921] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc
[1677/1921] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1678/1921] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc
[1679/1921] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc
[1680/1921] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc
[1681/1921] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc
[1682/1921] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc
[1683/1921] Generating ../../testcorenrn_watch/neuron/common.hoc
[1684/1921] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc
[1685/1921] Generating ../../testcorenrn_watch/neuron/defvar.hoc
[1686/1921] Generating ../../testcorenrn_watch/neuron/testwatch.hoc
[1687/1921] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc
[1688/1921] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc
[1689/1921] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc
[1690/1921] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1691/1921] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc
[1692/1921] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc
[1693/1921] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc
[1694/1921] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc
[1695/1921] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc
[1696/1921] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc
[1697/1921] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc
[1698/1921] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc
[1699/1921] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc
[1700/1921] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc
[1701/1921] Building special[-core] for test group example_nmodl
/Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2
cfiles =
Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod"

MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o
 -> Compiling mod_func.cpp
 -> NMODL .././argpass.mod
 -> NMODL .././cabpump.mod
 -> NMODL .././cachan.mod
Translating cachan.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
Thread Safe
 -> NMODL .././cacum.mod
Translating argpass.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././cacur.mod
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL .././cadif.mod
Translating cadif.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
Thread Safe
 -> NMODL .././cadifusl.mod
Translating cacur.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
Thread Safe
 -> NMODL .././cagk.mod
Translating cacum.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
Thread Safe
 -> NMODL .././cagkftab.mod
Translating cagk.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
Thread Safe
 -> NMODL .././capmp.mod
Translating cadifusl.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL .././expsynspine.mod
Translating cagkftab.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
Thread Safe
 -> NMODL .././fh.mod
Translating capmp.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
NEURON's CVode method ignores conservation
Thread Safe
 -> NMODL .././fit1.mod
Translating expsynspine.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
Notice: LINEAR is not thread safe.
 -> NMODL .././gap.mod
Translating fh.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
INCLUDEing standard.inc
Notice: Assignment to the GLOBAL variable, "inf", is not thread safe
Notice: Assignment to the GLOBAL variable, "tau", is not thread safe
 -> NMODL .././hh1.mod
Translating gap.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
Notice: Use of POINTER is not thread safe.
 -> NMODL .././hhvect.mod
Translating fit1.mod into /Users/gitlab-runner/builds/0/P208972/J1266264/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
Notice: VE

spack-setup.txt

test-neuron-nmodl-intel-legacy.txt

test-neuron-nmodl-intel-shared.txt

test-neuron-nmodl-nvhpc-acc-legacy.txt

test-neuron-nmodl-nvhpc-acc-shared.txt

test-neuron-nmodl-nvhpc-omp-legacy.txt

test-neuron-nmodl-nvhpc-omp.txt