Created
January 26, 2024 16:05
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/188550 (:white_check_mark:) running on GitHub PR neuronsimulator/nrn#2689.
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1706280868:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1706280868:resolve_secrets [0Ksection_start:1706280868:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor808053945, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nrn | |
Pipeline ID 188550, build ref , job ID 1133003 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J1133003_PROD_P2160_CP0_C4 | |
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 1988931 | |
job state: PD | |
job state: PD | |
job state: PD | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J1133003_PROD_P2160_CP0_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550 --time=2:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550 --ntasks=2 --jobid=1988931 --cpus-per-task=8 --mem=76G | |
section_end:1706280873:prepare_executor [0Ksection_start:1706280873:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r1i4n18 via bbpv1.epfl.ch... | |
section_end:1706280877:prepare_script [0Ksection_start:1706280877:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1706280878:get_sources [0Ksection_start:1706280878:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
Using git from spack modules | |
[32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=128386 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
cache.zip is up to date [0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1706280884:restore_cache [0Ksection_start:1706280884:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for build:nmodl (1133002)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=128542 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=1133002 responseStatus[0;m=200 OK token[0;m=64_mFJW2 | |
section_end:1706280885:download_artifacts [0Ksection_start:1706280885:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
--- config: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133003/spack-config/config.yaml:2 build_stage: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133003/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133003/spack-build | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133003/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133003/spack-source-cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/config.yaml:2 ccache: True | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:18 extensions: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:146 locks: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 600 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:211 bind: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
_builtin debug: False | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
--- concretizer: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133003/spack-config/concretizer.yaml:2 reuse: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550/J1133003_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/gmyhu35b46wzonve4gxcvv67ermflqk7 | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ module load unstable ccache[0;m | |
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550 | |
[32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ ccache --zero-stats[0;m | |
Statistics zeroed | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /nvme/bbpcihpcproj12/1988931/ccache | |
Primary config: /nvme/bbpcihpcproj12/1988931/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Fri Jan 26 15:54:52 2024 | |
Hits: 0 / 0 | |
Direct: 0 / 0 | |
Preprocessed: 0 / 0 | |
Misses: 0 | |
Direct: 0 | |
Preprocessed: 0 | |
Primary storage: | |
Hits: 0 / 0 | |
Misses: 0 | |
Cache size (GB): 0.48 / 0.51 (94.04 %) | |
Files: 9959 | |
[32;1m$ fi[0;m | |
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
Input spec | |
-------------------------------- | |
- neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
Concretized | |
-------------------------------- | |
- hjf4jvr neuron@develop%oneapi@2022.2.1~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] tfmovis ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] 6vmhmdx ^hpe-mpi@2.27.p1.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
- qzluzg3 ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] robnu5b ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake | |
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[+] gmyhu35 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 4roal44 ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] uucrzmi ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 2zoh6fg ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] a53pqvu ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ua7apk4 ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
[^] oumzlg3 ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] yqakowj ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[32;1m$ set -o pipefail[0;m | |
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-hedfpr (external boost-1.80.0-tfmovis2fgojotxjxkbmubnpkxslqlqz) | |
==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.27.p1.hmpt-giwtwf (external hpe-mpi-2.27.p1.hmpt-6vmhmdx2nsibj6mzxfb3sxl32cs7c3fc) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
==> python@3.10.8 : has external module in ['python/3.10.8'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-robnu5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow | |
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550, but it is owned by 0 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_gcc-12.2.0-skylake/libsonata-report-develop-qzluzg | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-4roal4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_gcc-12.2.0-skylake/nmodl-develop-gmyhu3 | |
==> Installing neuron-develop-hjf4jvrcuxcbmaaxuy7vjwvm6pd2x3se | |
==> No binary for neuron-develop-hjf4jvrcuxcbmaaxuy7vjwvm6pd2x3se found: installing from source | |
==> No patches needed for neuron | |
==> neuron: Executing phase: 'cmake' | |
==> neuron: Executing phase: 'build' | |
==> neuron: Executing phase: 'install' | |
==> neuron: Successfully installed neuron-develop-hjf4jvrcuxcbmaaxuy7vjwvm6pd2x3se | |
Fetch: 59.75s. Build: 8m 23.94s. Total: 9m 23.69s. | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_oneapi-2022.2.1-skylake/neuron-develop-hjf4jv | |
[32;1m$ set +o pipefail[0;m | |
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
Determined the installed hash to be hjf4jvrcuxcbmaaxuy7vjwvm6pd2x3se | |
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ ccache --cleanup[0;m | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /nvme/bbpcihpcproj12/1988931/ccache | |
Primary config: /nvme/bbpcihpcproj12/1988931/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Fri Jan 26 16:08:59 2024 | |
Hits: 791 / 860 (91.98 %) | |
Direct: 359 / 864 (41.55 %) | |
Preprocessed: 432 / 504 (85.71 %) | |
Misses: 69 | |
Direct: 505 | |
Preprocessed: 72 | |
Uncacheable: 803 | |
Primary storage: | |
Hits: 1400 / 1727 (81.07 %) | |
Misses: 327 | |
Cache size (GB): 0.48 / 0.51 (92.79 %) | |
Files: 10034 | |
Cleanups: 2 | |
Uncacheable: | |
Autoconf compile/link: 5 | |
Called for linking: 785 | |
Called for preprocessing: 1 | |
Compilation failed: 3 | |
No input file: 8 | |
Preprocessing failed: 1 | |
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
Autoloading python/3.10.8 | |
Autoloading intel-oneapi-mkl/2021.4.0 | |
Autoloading hpe-mpi/2.27.p1.hmpt | |
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
section_end:1706281740:step_script [0Ksection_start:1706281740:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mCreating cache build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=153406 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ccache.tar: found 1 matching files and directories[0;m | |
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected[0;m | |
[32;1mCreated cache[0;m | |
section_end:1706281760:archive_cache [0Ksection_start:1706281760:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=153758 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
initial_environment.env: found 1 matching files and directories[0;m | |
spack-build-env.txt: found 1 matching files and directories[0;m | |
spack-build-out.txt: found 1 matching files and directories[0;m | |
spack-configure-args.txt: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1133003 responseStatus[0;m=201 Created token[0;m=64_mFJW2 | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=153797 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1133003 responseStatus[0;m=201 Created token[0;m=64_mFJW2 | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=153841 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1133003 responseStatus[0;m=201 Created token[0;m=64_mFJW2 | |
section_end:1706281762:upload_artifacts_on_success [0Ksection_start:1706281762:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1706281763:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1706280870:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1706280870:resolve_secrets [0Ksection_start:1706280870:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor523488979, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nrn | |
Pipeline ID 188550, build ref , job ID 1133005 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J1133005_PROD_P2160_CP8_C16 | |
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 1988933 | |
job state: PD | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J1133005_PROD_P2160_CP8_C16 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550 --time=2:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550 --ntasks=2 --jobid=1988933 --cpus-per-task=8 --mem=76G | |
section_end:1706280872:prepare_executor [0Ksection_start:1706280872:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r1i6n25 via bbpv1.epfl.ch... | |
section_end:1706280878:prepare_script [0Ksection_start:1706280878:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1706280879:get_sources [0Ksection_start:1706280879:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
Using git from spack modules | |
[32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=191769 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
cache.zip is up to date [0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1706280884:restore_cache [0Ksection_start:1706280884:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for build:nmodl (1133002)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=192528 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=1133002 responseStatus[0;m=200 OK token[0;m=64_Di7mQ | |
section_end:1706280885:download_artifacts [0Ksection_start:1706280885:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
--- config: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133005/spack-config/config.yaml:2 build_stage: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133005/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133005/spack-build | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133005/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133005/spack-source-cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/config.yaml:2 ccache: True | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:18 extensions: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:146 locks: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 600 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:211 bind: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
_builtin debug: False | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
--- concretizer: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133005/spack-config/concretizer.yaml:2 reuse: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550/J1133005_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/gmyhu35b46wzonve4gxcvv67ermflqk7 | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ module load unstable ccache[0;m | |
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550 | |
[32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ ccache --zero-stats[0;m | |
Statistics zeroed | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /nvme/bbpcihpcproj12/1988933/ccache | |
Primary config: /nvme/bbpcihpcproj12/1988933/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Fri Jan 26 15:54:49 2024 | |
Hits: 0 / 0 | |
Direct: 0 / 0 | |
Preprocessed: 0 / 0 | |
Misses: 0 | |
Direct: 0 | |
Preprocessed: 0 | |
Primary storage: | |
Hits: 0 / 0 | |
Misses: 0 | |
Cache size (GB): 0.46 / 0.51 (89.98 %) | |
Files: 10967 | |
[32;1m$ fi[0;m | |
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
Input spec | |
-------------------------------- | |
- neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
Concretized | |
-------------------------------- | |
- thztk4p neuron@develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] tfmovis ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
[^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] 6vmhmdx ^hpe-mpi@2.27.p1.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
- qzluzg3 ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] robnu5b ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake | |
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[+] gmyhu35 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 4roal44 ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] uucrzmi ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 2zoh6fg ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] a53pqvu ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ua7apk4 ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
[^] oumzlg3 ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] yqakowj ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[32;1m$ set -o pipefail[0;m | |
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-hedfpr (external boost-1.80.0-tfmovis2fgojotxjxkbmubnpkxslqlqz) | |
==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t) | |
==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.27.p1.hmpt-giwtwf (external hpe-mpi-2.27.p1.hmpt-6vmhmdx2nsibj6mzxfb3sxl32cs7c3fc) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
==> python@3.10.8 : has external module in ['python/3.10.8'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-robnu5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550, but it is owned by 0 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-4roal4 | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_gcc-12.2.0-skylake/nmodl-develop-gmyhu3 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_gcc-12.2.0-skylake/libsonata-report-develop-qzluzg | |
==> Installing neuron-develop-thztk4pzxjujuuw5i7jdznq4733fpv7o | |
==> No binary for neuron-develop-thztk4pzxjujuuw5i7jdznq4733fpv7o found: installing from source | |
==> No patches needed for neuron | |
==> neuron: Executing phase: 'cmake' | |
==> neuron: Executing phase: 'build' | |
==> neuron: Executing phase: 'install' | |
==> neuron: Successfully installed neuron-develop-thztk4pzxjujuuw5i7jdznq4733fpv7o | |
Fetch: 18.60s. Build: 44m 40.52s. Total: 44m 59.12s. | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_nvhpc-23.1-skylake/neuron-develop-thztk4 | |
[32;1m$ set +o pipefail[0;m | |
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
Determined the installed hash to be thztk4pzxjujuuw5i7jdznq4733fpv7o | |
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ ccache --cleanup[0;m | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /nvme/bbpcihpcproj12/1988933/ccache | |
Primary config: /nvme/bbpcihpcproj12/1988933/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Fri Jan 26 16:43:58 2024 | |
Hits: 790 / 908 (87.00 %) | |
Direct: 359 / 863 (41.60 %) | |
Preprocessed: 431 / 502 (85.86 %) | |
Misses: 118 | |
Direct: 504 | |
Preprocessed: 71 | |
Uncacheable: 110 | |
Primary storage: | |
Hits: 1398 / 1724 (81.09 %) | |
Misses: 326 | |
Cache size (GB): 0.45 / 0.51 (88.73 %) | |
Files: 11085 | |
Cleanups: 2 | |
Uncacheable: | |
Autoconf compile/link: 5 | |
Called for linking: 90 | |
Called for preprocessing: 2 | |
Compilation failed: 3 | |
No input file: 8 | |
Preprocessing failed: 2 | |
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
Autoloading python/3.10.8 | |
Autoloading intel-oneapi-mkl/2021.4.0 | |
Autoloading hpe-mpi/2.27.p1.hmpt | |
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
section_end:1706283840:step_script [0Ksection_start:1706283840:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mCreating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=244372 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ccache.tar: found 1 matching files and directories[0;m | |
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected[0;m | |
[32;1mCreated cache[0;m | |
section_end:1706283858:archive_cache [0Ksection_start:1706283858:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=244644 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
initial_environment.env: found 1 matching files and directories[0;m | |
spack-build-env.txt: found 1 matching files and directories[0;m | |
spack-build-out.txt: found 1 matching files and directories[0;m | |
spack-configure-args.txt: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1133005 responseStatus[0;m=201 Created token[0;m=64_Di7mQ | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=244681 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1133005 responseStatus[0;m=201 Created token[0;m=64_Di7mQ | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=244722 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1133005 responseStatus[0;m=201 Created token[0;m=64_Di7mQ | |
section_end:1706283860:upload_artifacts_on_success [0Ksection_start:1706283860:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1706283861:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1706280872:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1706280872:resolve_secrets [0Ksection_start:1706280872:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3690478692, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nrn | |
Pipeline ID 188550, build ref , job ID 1133007 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J1133007_PROD_P2160_CP10_C19 | |
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 1988936 | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J1133007_PROD_P2160_CP10_C19 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550 --time=2:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550 --ntasks=2 --jobid=1988936 --cpus-per-task=8 --mem=76G | |
section_end:1706280873:prepare_executor [0Ksection_start:1706280873:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r1i6n25 via bbpv1.epfl.ch... | |
section_end:1706280874:prepare_script [0Ksection_start:1706280874:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1706280875:get_sources [0Ksection_start:1706280875:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
Using git from spack modules | |
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=191157 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
cache.zip is up to date [0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1706280881:restore_cache [0Ksection_start:1706280881:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for build:nmodl (1133002)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=191872 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=1133002 responseStatus[0;m=200 OK token[0;m=64_Wr_YF | |
section_end:1706280882:download_artifacts [0Ksection_start:1706280882:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
--- config: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133007/spack-config/config.yaml:2 build_stage: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133007/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133007/spack-build | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133007/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133007/spack-source-cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/config.yaml:2 ccache: True | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:18 extensions: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:146 locks: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 600 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:211 bind: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
_builtin debug: False | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
--- concretizer: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133007/spack-config/concretizer.yaml:2 reuse: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550/J1133007_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/gmyhu35b46wzonve4gxcvv67ermflqk7 | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ module load unstable ccache[0;m | |
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550 | |
[32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ ccache --zero-stats[0;m | |
Statistics zeroed | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /nvme/bbpcihpcproj12/1988936/ccache | |
Primary config: /nvme/bbpcihpcproj12/1988936/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Fri Jan 26 15:54:46 2024 | |
Hits: 0 / 0 | |
Direct: 0 / 0 | |
Preprocessed: 0 / 0 | |
Misses: 0 | |
Direct: 0 | |
Preprocessed: 0 | |
Primary storage: | |
Hits: 0 / 0 | |
Misses: 0 | |
Cache size (GB): 0.46 / 0.51 (90.43 %) | |
Files: 10811 | |
[32;1m$ fi[0;m | |
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
Input spec | |
-------------------------------- | |
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
- ^caliper+cuda cuda_arch=70 | |
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
Concretized | |
-------------------------------- | |
- 5qp6eoj neuron@develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] tfmovis ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
[^] 5nl5jk4 ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
[^] xp4icmj ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 7yt5klx ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake | |
[^] zttduab ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake | |
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
[^] ja6blio ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
[^] 3gsobub ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
[^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] 6vmhmdx ^hpe-mpi@2.27.p1.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
- qzluzg3 ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] robnu5b ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake | |
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[+] gmyhu35 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 4roal44 ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] uucrzmi ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 2zoh6fg ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] a53pqvu ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ua7apk4 ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
[^] oumzlg3 ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] yqakowj ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[32;1m$ set -o pipefail[0;m | |
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-hedfpr (external boost-1.80.0-tfmovis2fgojotxjxkbmubnpkxslqlqz) | |
==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.27.p1.hmpt-giwtwf (external hpe-mpi-2.27.p1.hmpt-6vmhmdx2nsibj6mzxfb3sxl32cs7c3fc) | |
==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
[+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu | |
==> python@3.10.8 : has external module in ['python/3.10.8'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-xp4icm | |
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550, but it is owned by 0 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-robnu5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg | |
==> Installing libsonata-report-develop-qzluzg3stdzoixmjm4zmv4wcj6xehme2 | |
==> No binary for libsonata-report-develop-qzluzg3stdzoixmjm4zmv4wcj6xehme2 found: installing from source | |
==> No patches needed for libsonata-report | |
==> libsonata-report: Executing phase: 'cmake' | |
==> libsonata-report: Executing phase: 'build' | |
==> libsonata-report: Executing phase: 'install' | |
==> libsonata-report: Successfully installed libsonata-report-develop-qzluzg3stdzoixmjm4zmv4wcj6xehme2 | |
Fetch: 2.40s. Build: 5.34s. Total: 7.75s. | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_gcc-12.2.0-skylake/libsonata-report-develop-qzluzg | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-4roal4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-5nl5jk | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_gcc-12.2.0-skylake/nmodl-develop-gmyhu3 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
==> Installing neuron-develop-5qp6eoj5da3clmlrdhuhcluxvbf2yo4q | |
==> No binary for neuron-develop-5qp6eoj5da3clmlrdhuhcluxvbf2yo4q found: installing from source | |
==> No patches needed for neuron | |
==> neuron: Executing phase: 'cmake' | |
==> neuron: Executing phase: 'build' | |
==> neuron: Executing phase: 'install' | |
==> neuron: Successfully installed neuron-develop-5qp6eoj5da3clmlrdhuhcluxvbf2yo4q | |
Fetch: 36.99s. Build: 45m 13.23s. Total: 45m 50.22s. | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_nvhpc-23.1-skylake/neuron-develop-5qp6eo | |
[32;1m$ set +o pipefail[0;m | |
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
Determined the installed hash to be 5qp6eoj5da3clmlrdhuhcluxvbf2yo4q | |
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ ccache --cleanup[0;m | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /nvme/bbpcihpcproj12/1988936/ccache | |
Primary config: /nvme/bbpcihpcproj12/1988936/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Fri Jan 26 16:44:37 2024 | |
Hits: 812 / 940 (86.38 %) | |
Direct: 381 / 887 (42.95 %) | |
Preprocessed: 431 / 504 (85.52 %) | |
Misses: 128 | |
Direct: 506 | |
Preprocessed: 73 | |
Uncacheable: 135 | |
Primary storage: | |
Hits: 1439 / 1772 (81.21 %) | |
Misses: 333 | |
Cache size (GB): 0.47 / 0.51 (91.76 %) | |
Files: 11199 | |
Uncacheable: | |
Autoconf compile/link: 5 | |
Called for linking: 105 | |
Called for preprocessing: 2 | |
Compilation failed: 3 | |
No input file: 18 | |
Preprocessing failed: 2 | |
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
Autoloading python/3.10.8 | |
Autoloading intel-oneapi-mkl/2021.4.0 | |
Autoloading hpe-mpi/2.27.p1.hmpt | |
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
section_end:1706283878:step_script [0Ksection_start:1706283878:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=245526 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ccache.tar: found 1 matching files and directories[0;m | |
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected[0;m | |
[32;1mCreated cache[0;m | |
section_end:1706283898:archive_cache [0Ksection_start:1706283898:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=245646 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
initial_environment.env: found 1 matching files and directories[0;m | |
spack-build-env.txt: found 1 matching files and directories[0;m | |
spack-build-out.txt: found 1 matching files and directories[0;m | |
spack-configure-args.txt: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1133007 responseStatus[0;m=201 Created token[0;m=64_Wr_YF | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=245678 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1133007 responseStatus[0;m=201 Created token[0;m=64_Wr_YF | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=245712 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1133007 responseStatus[0;m=201 Created token[0;m=64_Wr_YF | |
section_end:1706283899:upload_artifacts_on_success [0Ksection_start:1706283899:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1706283900:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1706280873:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1706280873:resolve_secrets [0Ksection_start:1706280873:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2577275368, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nrn | |
Pipeline ID 188550, build ref , job ID 1133008 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J1133008_PROD_P2160_CP11_C20 | |
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 1988937 | |
job state: PD | |
job state: PD | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J1133008_PROD_P2160_CP11_C20 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550 --time=2:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550 --ntasks=2 --jobid=1988937 --cpus-per-task=8 --mem=76G | |
section_end:1706280876:prepare_executor [0Ksection_start:1706280876:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r1i6n19 via bbpv1.epfl.ch... | |
section_end:1706280879:prepare_script [0Ksection_start:1706280879:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1706280880:get_sources [0Ksection_start:1706280880:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
Using git from spack modules | |
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=135782 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
cache.zip is up to date [0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1706280885:restore_cache [0Ksection_start:1706280885:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for build:nmodl (1133002)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=135887 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=1133002 responseStatus[0;m=200 OK token[0;m=64_Zizci | |
section_end:1706280886:download_artifacts [0Ksection_start:1706280886:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
--- config: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133008/spack-config/config.yaml:2 build_stage: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133008/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133008/spack-build | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133008/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133008/spack-source-cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/config.yaml:2 ccache: True | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:18 extensions: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:146 locks: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 600 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:211 bind: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
_builtin debug: False | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
--- concretizer: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133008/spack-config/concretizer.yaml:2 reuse: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550/J1133008_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/gmyhu35b46wzonve4gxcvv67ermflqk7 | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ module load unstable ccache[0;m | |
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550 | |
[32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ ccache --zero-stats[0;m | |
Statistics zeroed | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /nvme/bbpcihpcproj12/1988937/ccache | |
Primary config: /nvme/bbpcihpcproj12/1988937/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Fri Jan 26 15:54:51 2024 | |
Hits: 0 / 0 | |
Direct: 0 / 0 | |
Preprocessed: 0 / 0 | |
Misses: 0 | |
Direct: 0 | |
Preprocessed: 0 | |
Primary storage: | |
Hits: 0 / 0 | |
Misses: 0 | |
Cache size (GB): 0.46 / 0.51 (90.53 %) | |
Files: 11358 | |
[32;1m$ fi[0;m | |
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
Input spec | |
-------------------------------- | |
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
- ^caliper+cuda cuda_arch=70 | |
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
Concretized | |
-------------------------------- | |
- sx5ga7b neuron@develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] tfmovis ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
[^] 5nl5jk4 ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
[^] xp4icmj ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 7yt5klx ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake | |
[^] zttduab ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake | |
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
[^] ja6blio ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
[^] 3gsobub ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
[^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] 6vmhmdx ^hpe-mpi@2.27.p1.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
- qzluzg3 ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] robnu5b ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake | |
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[+] gmyhu35 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 4roal44 ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] uucrzmi ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 2zoh6fg ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] a53pqvu ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ua7apk4 ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
[^] oumzlg3 ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] yqakowj ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[32;1m$ set -o pipefail[0;m | |
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550, but it is owned by 0 | |
==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-hedfpr (external boost-1.80.0-tfmovis2fgojotxjxkbmubnpkxslqlqz) | |
==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.27.p1.hmpt-giwtwf (external hpe-mpi-2.27.p1.hmpt-6vmhmdx2nsibj6mzxfb3sxl32cs7c3fc) | |
==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
[+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu | |
==> python@3.10.8 : has external module in ['python/3.10.8'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-xp4icm | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-robnu5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-4roal4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-5nl5jk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_gcc-12.2.0-skylake/nmodl-develop-gmyhu3 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_gcc-12.2.0-skylake/libsonata-report-develop-qzluzg | |
==> Installing neuron-develop-sx5ga7bc3qgekwqadpkvpo7l55gy4anp | |
==> No binary for neuron-develop-sx5ga7bc3qgekwqadpkvpo7l55gy4anp found: installing from source | |
==> No patches needed for neuron | |
==> neuron: Executing phase: 'cmake' | |
==> neuron: Executing phase: 'build' | |
==> neuron: Executing phase: 'install' | |
==> neuron: Successfully installed neuron-develop-sx5ga7bc3qgekwqadpkvpo7l55gy4anp | |
Fetch: 23.72s. Build: 16m 51.57s. Total: 17m 15.28s. | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_nvhpc-23.1-skylake/neuron-develop-sx5ga7 | |
[32;1m$ set +o pipefail[0;m | |
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
Determined the installed hash to be sx5ga7bc3qgekwqadpkvpo7l55gy4anp | |
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ ccache --cleanup[0;m | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /nvme/bbpcihpcproj12/1988937/ccache | |
Primary config: /nvme/bbpcihpcproj12/1988937/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Fri Jan 26 16:16:04 2024 | |
Hits: 790 / 918 (86.06 %) | |
Direct: 359 / 865 (41.50 %) | |
Preprocessed: 431 / 504 (85.52 %) | |
Misses: 128 | |
Direct: 506 | |
Preprocessed: 73 | |
Uncacheable: 112 | |
Primary storage: | |
Hits: 1397 / 1728 (80.84 %) | |
Misses: 331 | |
Cache size (GB): 0.46 / 0.51 (90.61 %) | |
Files: 11644 | |
Cleanups: 1 | |
Uncacheable: | |
Autoconf compile/link: 5 | |
Called for linking: 92 | |
Called for preprocessing: 2 | |
Compilation failed: 3 | |
No input file: 8 | |
Preprocessing failed: 2 | |
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
Autoloading python/3.10.8 | |
Autoloading intel-oneapi-mkl/2021.4.0 | |
Autoloading hpe-mpi/2.27.p1.hmpt | |
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
section_end:1706282165:step_script [0Ksection_start:1706282165:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=155088 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ccache.tar: found 1 matching files and directories[0;m | |
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected[0;m | |
[32;1mCreated cache[0;m | |
section_end:1706282184:archive_cache [0Ksection_start:1706282184:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=155243 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
initial_environment.env: found 1 matching files and directories[0;m | |
spack-build-env.txt: found 1 matching files and directories[0;m | |
spack-build-out.txt: found 1 matching files and directories[0;m | |
spack-configure-args.txt: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1133008 responseStatus[0;m=201 Created token[0;m=64_Zizci | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=155284 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1133008 responseStatus[0;m=201 Created token[0;m=64_Zizci | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=155326 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1133008 responseStatus[0;m=201 Created token[0;m=64_Zizci | |
section_end:1706282187:upload_artifacts_on_success [0Ksection_start:1706282187:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1706282188:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1706280409:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1706280409:resolve_secrets [0Ksection_start:1706280409:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2810594434, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nrn | |
Pipeline ID 188550, build ref , job ID 1133002 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J1133002_PROD_P2160_CP0_C4 | |
Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 1988889 | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J1133002_PROD_P2160_CP0_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550 --time=1:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550 --ntasks=2 --jobid=1988889 --cpus-per-task=8 --mem=76G | |
section_end:1706280411:prepare_executor [0Ksection_start:1706280411:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r1i4n18 via bbpv1.epfl.ch... | |
section_end:1706280414:prepare_script [0Ksection_start:1706280414:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1706280414:get_sources [0Ksection_start:1706280414:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
Using git from spack modules | |
[32;1mChecking cache for build:nmodl-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=113731 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
cache.zip is up to date [0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1706280419:restore_cache [0Ksection_start:1706280419:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for spack_setup (1133000)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=113877 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=1133000 responseStatus[0;m=200 OK token[0;m=64_r7PDn | |
section_end:1706280420:download_artifacts [0Ksection_start:1706280420:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
--- config: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133002/spack-config/config.yaml:2 build_stage: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133002/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133002/spack-build | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133002/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133002/spack-source-cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/config.yaml:2 ccache: True | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:18 extensions: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:146 locks: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 600 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:211 bind: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
_builtin debug: False | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
--- concretizer: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133002/spack-config/concretizer.yaml:2 reuse: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/J1133000/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P188550/J1133002_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
Preparing to install nmodl%gcc ~legacy-unit | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ module load unstable ccache[0;m | |
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550 | |
[32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ ccache --zero-stats[0;m | |
Statistics zeroed | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /nvme/bbpcihpcproj12/1988889/ccache | |
Primary config: /nvme/bbpcihpcproj12/1988889/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Fri Jan 26 15:47:04 2024 | |
Hits: 0 / 0 | |
Direct: 0 / 0 | |
Preprocessed: 0 / 0 | |
Misses: 0 | |
Direct: 0 | |
Preprocessed: 0 | |
Primary storage: | |
Hits: 0 / 0 | |
Misses: 0 | |
Cache size (GB): 0.44 / 0.51 (86.85 %) | |
Files: 1293 | |
[32;1m$ fi[0;m | |
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
Input spec | |
-------------------------------- | |
- nmodl%gcc~legacy-unit | |
Concretized | |
-------------------------------- | |
- gmyhu35 nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] uucrzmi ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] d7dkmvv ^py-flit-core@3.7.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 2zoh6fg ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] a53pqvu ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 6tqbi2i ^py-setuptools-scm@7.0.5%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
[^] c564cvo ^py-typing-extensions@4.8.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] oumzlg3 ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] yqakowj ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[32;1m$ set -o pipefail[0;m | |
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
==> python@3.10.8 : has external module in ['python/3.10.8'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-flit-core-3.7.1-d7dkmv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-typing-extensions-4.8.0-c564cv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-scm-7.0.5-6tqbi2 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow | |
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550, but it is owned by 0 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg | |
==> Installing nmodl-develop-gmyhu35b46wzonve4gxcvv67ermflqk7 | |
==> No binary for nmodl-develop-gmyhu35b46wzonve4gxcvv67ermflqk7 found: installing from source | |
==> No patches needed for nmodl | |
==> nmodl: Executing phase: 'cmake' | |
==> nmodl: Executing phase: 'build' | |
==> nmodl: Executing phase: 'install' | |
==> nmodl: Successfully installed nmodl-develop-gmyhu35b46wzonve4gxcvv67ermflqk7 | |
Fetch: 50.58s. Build: 2m 22.23s. Total: 3m 12.80s. | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P188550/software/install_gcc-12.2.0-skylake/nmodl-develop-gmyhu3 | |
[32;1m$ set +o pipefail[0;m | |
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
Determined the installed hash to be gmyhu35b46wzonve4gxcvv67ermflqk7 | |
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ ccache --cleanup[0;m | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /nvme/bbpcihpcproj12/1988889/ccache | |
Primary config: /nvme/bbpcihpcproj12/1988889/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Fri Jan 26 15:54:00 2024 | |
Hits: 133 / 135 (98.52 %) | |
Direct: 27 / 135 (20.00 %) | |
Preprocessed: 106 / 108 (98.15 %) | |
Misses: 2 | |
Direct: 108 | |
Preprocessed: 2 | |
Uncacheable: 25 | |
Primary storage: | |
Hits: 160 / 270 (59.26 %) | |
Misses: 110 | |
Cache size (GB): 0.44 / 0.51 (86.87 %) | |
Files: 1297 | |
Uncacheable: | |
Called for linking: 24 | |
No input file: 1 | |
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
Autoloading python/3.10.8 | |
Autoloading intel-oneapi-mkl/2021.4.0 | |
Autoloading hpe-mpi/2.27.p1.hmpt | |
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
section_end:1706280842:step_script [0Ksection_start:1706280842:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mCreating cache build:nmodl-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=127229 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ccache.tar: found 1 matching files and directories[0;m | |
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m | |
[32;1mCreated cache[0;m | |
section_end:1706280862:archive_cache [0Ksection_start:1706280862:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=127489 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
initial_environment.env: found 1 matching files and directories[0;m | |
spack-build-env.txt: found 1 matching files and directories[0;m | |
spack-build-out.txt: found 1 matching files and directories[0;m | |
spack-configure-args.txt: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1133002 responseStatus[0;m=201 Created token[0;m=64_r7PDn | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=127532 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1133002 responseStatus[0;m=201 Created token[0;m=64_r7PDn | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=127574 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1133002 responseStatus[0;m=201 Created token[0;m=64_r7PDn | |
section_end:1706280864:upload_artifacts_on_success [0Ksection_start:1706280864:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1706280865:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m | |
[0K on macos-arm64 vGzz-bdp[0;m | |
section_start:1706280257:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1706280257:resolve_secrets [0Ksection_start:1706280257:prepare_executor [0K[0K[36;1mPreparing the "shell" executor[0;m[0;m | |
[0KUsing Shell executor...[0;m | |
section_end:1706280257:prepare_executor [0Ksection_start:1706280257:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Running on bbpmacglr01.bbp.epfl.ch... | |
section_end:1706280257:prepare_script [0Ksection_start:1706280257:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
[32;1mFetching changes with git depth set to 20...[0;m | |
Initialized empty Git repository in /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/.git/ | |
[32;1mCreated fresh repository.[0;m | |
[32;1mChecking out c57bbe49 as cornu/move_rng_gnu...[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1706280259:get_sources [0Ksection_start:1706280259:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
[32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-cornu/move_rng_gnu-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=49598 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1706280265:restore_cache [0Ksection_start:1706280265:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ real_python=$(python3 resolve_shim.py)[0;m | |
[32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m | |
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python | |
[32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m | |
[32;1m$ venv/bin/python3 -m ensurepip --upgrade --default-pip[0;m | |
Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpfx8mds1o | |
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpfx8mds1o/setuptools-68.2.2-py3-none-any.whl | |
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpfx8mds1o/pip-23.3.1-py3-none-any.whl | |
Installing collected packages: setuptools, pip | |
Successfully installed pip-23.3.1 setuptools-68.2.2 | |
[32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m | |
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1) | |
Collecting pip | |
Using cached pip-23.3.2-py3-none-any.whl.metadata (3.5 kB) | |
Collecting wheel (from -r nrn_requirements.txt (line 1)) | |
Using cached wheel-0.42.0-py3-none-any.whl.metadata (2.2 kB) | |
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (68.2.2) | |
Collecting setuptools (from -r nrn_requirements.txt (line 2)) | |
Using cached setuptools-69.0.3-py3-none-any.whl.metadata (6.3 kB) | |
Collecting setuptools_scm (from -r nrn_requirements.txt (line 3)) | |
Using cached setuptools_scm-8.0.4-py3-none-any.whl.metadata (6.4 kB) | |
Collecting scikit-build (from -r nrn_requirements.txt (line 4)) | |
Using cached scikit_build-0.17.6-py3-none-any.whl.metadata (14 kB) | |
Collecting matplotlib (from -r nrn_requirements.txt (line 5)) | |
Using cached matplotlib-3.8.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB) | |
Collecting bokeh<3 (from -r nrn_requirements.txt (line 7)) | |
Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB) | |
Collecting ipython (from -r nrn_requirements.txt (line 8)) | |
Using cached ipython-8.20.0-py3-none-any.whl.metadata (5.9 kB) | |
Collecting cython<3 (from -r nrn_requirements.txt (line 9)) | |
Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB) | |
Collecting packaging (from -r nrn_requirements.txt (line 10)) | |
Using cached packaging-23.2-py3-none-any.whl.metadata (3.2 kB) | |
Collecting pytest (from -r nrn_requirements.txt (line 11)) | |
Using cached pytest-7.4.4-py3-none-any.whl.metadata (7.9 kB) | |
Collecting pytest-cov (from -r nrn_requirements.txt (line 12)) | |
Using cached pytest_cov-4.1.0-py3-none-any.whl.metadata (26 kB) | |
Collecting mpi4py (from -r nrn_requirements.txt (line 13)) | |
Using cached mpi4py-3.1.5-cp310-cp310-macosx_12_0_arm64.whl | |
Collecting numpy (from -r nrn_requirements.txt (line 14)) | |
Using cached numpy-1.26.3-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB) | |
Collecting find_libpython (from -r nrn_requirements.txt (line 15)) | |
Using cached find_libpython-0.3.1-py3-none-any.whl.metadata (2.7 kB) | |
Collecting typing-extensions (from setuptools_scm->-r nrn_requirements.txt (line 3)) | |
Using cached typing_extensions-4.9.0-py3-none-any.whl.metadata (3.0 kB) | |
Collecting tomli>=1 (from setuptools_scm->-r nrn_requirements.txt (line 3)) | |
Using cached tomli-2.0.1-py3-none-any.whl (12 kB) | |
Collecting distro (from scikit-build->-r nrn_requirements.txt (line 4)) | |
Using cached distro-1.9.0-py3-none-any.whl.metadata (6.8 kB) | |
Collecting contourpy>=1.0.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
Using cached contourpy-1.2.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB) | |
Collecting cycler>=0.10 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) | |
Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
Using cached fonttools-4.47.2-cp310-cp310-macosx_10_9_universal2.whl.metadata (157 kB) | |
Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB) | |
Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
Using cached pillow-10.2.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.7 kB) | |
Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
Using cached pyparsing-3.1.1-py3-none-any.whl.metadata (5.1 kB) | |
Collecting python-dateutil>=2.7 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) | |
Collecting Jinja2>=2.9 (from bokeh<3->-r nrn_requirements.txt (line 7)) | |
Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) | |
Collecting PyYAML>=3.10 (from bokeh<3->-r nrn_requirements.txt (line 7)) | |
Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB) | |
Collecting tornado>=5.1 (from bokeh<3->-r nrn_requirements.txt (line 7)) | |
Using cached tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl.metadata (2.5 kB) | |
Collecting decorator (from ipython->-r nrn_requirements.txt (line 8)) | |
Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB) | |
Collecting jedi>=0.16 (from ipython->-r nrn_requirements.txt (line 8)) | |
Using cached jedi-0.19.1-py2.py3-none-any.whl.metadata (22 kB) | |
Collecting matplotlib-inline (from ipython->-r nrn_requirements.txt (line 8)) | |
Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB) | |
Collecting prompt-toolkit<3.1.0,>=3.0.41 (from ipython->-r nrn_requirements.txt (line 8)) | |
Using cached prompt_toolkit-3.0.43-py3-none-any.whl.metadata (6.5 kB) | |
Collecting pygments>=2.4.0 (from ipython->-r nrn_requirements.txt (line 8)) | |
Using cached pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB) | |
Collecting stack-data (from ipython->-r nrn_requirements.txt (line 8)) | |
Using cached stack_data-0.6.3-py3-none-any.whl.metadata (18 kB) | |
Collecting traitlets>=5 (from ipython->-r nrn_requirements.txt (line 8)) | |
Using cached traitlets-5.14.1-py3-none-any.whl.metadata (10 kB) | |
Collecting exceptiongroup (from ipython->-r nrn_requirements.txt (line 8)) | |
Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB) | |
Collecting pexpect>4.3 (from ipython->-r nrn_requirements.txt (line 8)) | |
Using cached pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB) | |
Collecting iniconfig (from pytest->-r nrn_requirements.txt (line 11)) | |
Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB) | |
Collecting pluggy<2.0,>=0.12 (from pytest->-r nrn_requirements.txt (line 11)) | |
Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB) | |
Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov->-r nrn_requirements.txt (line 12)) | |
Using cached coverage-7.4.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (8.1 kB) | |
Collecting parso<0.9.0,>=0.8.3 (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 8)) | |
Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB) | |
Collecting MarkupSafe>=2.0 (from Jinja2>=2.9->bokeh<3->-r nrn_requirements.txt (line 7)) | |
Using cached MarkupSafe-2.1.4-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB) | |
Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 8)) | |
Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) | |
Collecting wcwidth (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 8)) | |
Using cached wcwidth-0.2.13-py2.py3-none-any.whl.metadata (14 kB) | |
Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5)) | |
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) | |
Collecting executing>=1.2.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8)) | |
Using cached executing-2.0.1-py2.py3-none-any.whl.metadata (9.0 kB) | |
Collecting asttokens>=2.1.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8)) | |
Using cached asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB) | |
Collecting pure-eval (from stack-data->ipython->-r nrn_requirements.txt (line 8)) | |
Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB) | |
Using cached pip-23.3.2-py3-none-any.whl (2.1 MB) | |
Using cached wheel-0.42.0-py3-none-any.whl (65 kB) | |
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Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB) | |
Using cached matplotlib-3.8.2-cp310-cp310-macosx_11_0_arm64.whl (7.5 MB) | |
Using cached ipython-8.20.0-py3-none-any.whl (809 kB) | |
Using cached Cython-0.29.37-py2.py3-none-any.whl (989 kB) | |
Using cached packaging-23.2-py3-none-any.whl (53 kB) | |
Using cached pytest-7.4.4-py3-none-any.whl (325 kB) | |
Using cached pytest_cov-4.1.0-py3-none-any.whl (21 kB) | |
Using cached numpy-1.26.3-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB) | |
Using cached find_libpython-0.3.1-py3-none-any.whl (8.4 kB) | |
Using cached contourpy-1.2.0-cp310-cp310-macosx_11_0_arm64.whl (242 kB) | |
Using cached coverage-7.4.0-cp310-cp310-macosx_11_0_arm64.whl (205 kB) | |
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB) | |
Using cached exceptiongroup-1.2.0-py3-none-any.whl (16 kB) | |
Using cached fonttools-4.47.2-cp310-cp310-macosx_10_9_universal2.whl (2.8 MB) | |
Using cached jedi-0.19.1-py2.py3-none-any.whl (1.6 MB) | |
Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB) | |
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB) | |
Using cached pexpect-4.9.0-py2.py3-none-any.whl (63 kB) | |
Using cached pillow-10.2.0-cp310-cp310-macosx_11_0_arm64.whl (3.3 MB) | |
Using cached pluggy-1.4.0-py3-none-any.whl (20 kB) | |
Using cached prompt_toolkit-3.0.43-py3-none-any.whl (386 kB) | |
Using cached pygments-2.17.2-py3-none-any.whl (1.2 MB) | |
Using cached pyparsing-3.1.1-py3-none-any.whl (103 kB) | |
Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl (169 kB) | |
Using cached tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl (433 kB) | |
Using cached traitlets-5.14.1-py3-none-any.whl (85 kB) | |
Using cached typing_extensions-4.9.0-py3-none-any.whl (32 kB) | |
Using cached distro-1.9.0-py3-none-any.whl (20 kB) | |
Using cached stack_data-0.6.3-py3-none-any.whl (24 kB) | |
Using cached asttokens-2.4.1-py2.py3-none-any.whl (27 kB) | |
Using cached executing-2.0.1-py2.py3-none-any.whl (24 kB) | |
Using cached MarkupSafe-2.1.4-cp310-cp310-macosx_10_9_universal2.whl (17 kB) | |
Using cached wcwidth-0.2.13-py2.py3-none-any.whl (34 kB) | |
Installing collected packages: wcwidth, pure-eval, ptyprocess, find_libpython, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, executing, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython | |
Attempting uninstall: setuptools | |
Found existing installation: setuptools 68.2.2 | |
Uninstalling setuptools-68.2.2: | |
Successfully uninstalled setuptools-68.2.2 | |
Attempting uninstall: pip | |
Found existing installation: pip 23.3.1 | |
Uninstalling pip-23.3.1: | |
Successfully uninstalled pip-23.3.1 | |
Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.4 PyYAML-6.0.1 asttokens-2.4.1 bokeh-2.4.3 contourpy-1.2.0 coverage-7.4.0 cycler-0.12.1 cython-0.29.37 decorator-5.1.1 distro-1.9.0 exceptiongroup-1.2.0 executing-2.0.1 find_libpython-0.3.1 fonttools-4.47.2 iniconfig-2.0.0 ipython-8.20.0 jedi-0.19.1 kiwisolver-1.4.5 matplotlib-3.8.2 matplotlib-inline-0.1.6 mpi4py-3.1.5 numpy-1.26.3 packaging-23.2 parso-0.8.3 pexpect-4.9.0 pillow-10.2.0 pip-23.3.2 pluggy-1.4.0 prompt-toolkit-3.0.43 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.17.2 pyparsing-3.1.1 pytest-7.4.4 pytest-cov-4.1.0 python-dateutil-2.8.2 scikit-build-0.17.6 setuptools-69.0.3 setuptools_scm-8.0.4 six-1.16.0 stack-data-0.6.3 tomli-2.0.1 tornado-6.4 traitlets-5.14.1 typing-extensions-4.9.0 wcwidth-0.2.13 wheel-0.42.0 | |
[32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m | |
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl' | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/nmodl'... | |
From https://github.com/BlueBrain/nmodl | |
* branch 6c89dc639c1ee59e8cfdd69719780e0185f1ec08 -> FETCH_HEAD | |
Submodule path 'external/nmodl': checked out '6c89dc639c1ee59e8cfdd69719780e0185f1ec08' | |
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions' | |
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2' | |
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11' | |
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen' | |
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt' | |
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json' | |
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11' | |
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog' | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'... | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/nmodl/ext/catch2'... | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/nmodl/ext/cli11'... | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/nmodl/ext/eigen'... | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/nmodl/ext/fmt'... | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/nmodl/ext/json'... | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/nmodl/ext/pybind11'... | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/nmodl/ext/spdlog'... | |
From https://github.com/BlueBrain/hpc-coding-conventions | |
* branch f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD | |
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d' | |
From https://github.com/catchorg/Catch2 | |
* branch 3f0283de7a9c43200033da996ff9093be3ac84dc -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/catch2': checked out '3f0283de7a9c43200033da996ff9093be3ac84dc' | |
From https://github.com/CLIUtils/CLI11 | |
* branch b9be5b9444772324459989177108a6a65b8b2769 -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/cli11': checked out 'b9be5b9444772324459989177108a6a65b8b2769' | |
From https://gitlab.com/libeigen/eigen | |
* branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
From https://github.com/fmtlib/fmt | |
* branch a33701196adfad74917046096bf5a2aa0ab0bb50 -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/fmt': checked out 'a33701196adfad74917046096bf5a2aa0ab0bb50' | |
From https://github.com/nlohmann/json | |
* branch 4f8fba14066156b73f1189a2b8bd568bde5284c5 -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/json': checked out '4f8fba14066156b73f1189a2b8bd568bde5284c5' | |
From https://github.com/pybind/pybind11 | |
* branch 914c06fb252b6cc3727d0eedab6736e88a3fcb01 -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/pybind11': checked out '914c06fb252b6cc3727d0eedab6736e88a3fcb01' | |
From https://github.com/gabime/spdlog | |
* branch 76fb40d95455f249bd70824ecfcae7a8f0930fa3 -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/spdlog': checked out '76fb40d95455f249bd70824ecfcae7a8f0930fa3' | |
[32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m | |
Requirement already satisfied: Jinja2>=2.9.3 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 1)) (3.1.3) | |
Requirement already satisfied: PyYAML>=3.13 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 2)) (6.0.1) | |
Requirement already satisfied: pytest in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 3)) (7.4.4) | |
Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 4)) (4.1.0) | |
Collecting sympy (from -r external/nmodl/requirements.txt (line 5)) | |
Using cached sympy-1.12-py3-none-any.whl (5.7 MB) | |
Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 6)) (1.26.3) | |
Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 7)) (0.3.1) | |
Requirement already satisfied: scikit-build in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 8)) (0.17.6) | |
Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 1)) (2.1.4) | |
Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.0) | |
Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (23.2) | |
Requirement already satisfied: pluggy<2.0,>=0.12 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.4.0) | |
Requirement already satisfied: exceptiongroup>=1.0.0rc8 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.2.0) | |
Requirement already satisfied: tomli>=1.0.0 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.1) | |
Requirement already satisfied: coverage>=5.2.1 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=5.2.1->pytest-cov->-r external/nmodl/requirements.txt (line 4)) (7.4.0) | |
Collecting mpmath>=0.19 (from sympy->-r external/nmodl/requirements.txt (line 5)) | |
Using cached mpmath-1.3.0-py3-none-any.whl (536 kB) | |
Requirement already satisfied: distro in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (1.9.0) | |
Requirement already satisfied: setuptools>=42.0.0 in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (69.0.3) | |
Requirement already satisfied: wheel>=0.32.0 in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (0.42.0) | |
Installing collected packages: mpmath, sympy | |
Successfully installed mpmath-1.3.0 sympy-1.12 | |
[32;1m$ source ./venv/bin/activate[0;m | |
[32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m | |
[32;1m$ ${PYTHON} --version[0;m | |
Python 3.10.13 | |
[32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m | |
[32;1m$ export CXX=${CXX:-g++}[0;m | |
[32;1m$ export CC=${CC:-gcc}[0;m | |
[32;1m$ brew install flex bison[0;m | |
Warning: flex 2.6.4_2 is already installed and up-to-date. | |
To reinstall 2.6.4_2, run: | |
brew reinstall flex | |
Warning: bison 3.8.2 is already installed and up-to-date. | |
To reinstall 3.8.2, run: | |
brew reinstall bison | |
[32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m | |
[32;1m$ export INSTALL_DIR=$(pwd)/install[0;m | |
[32;1m$ echo $LANG[0;m | |
[32;1m$ echo $LC_ALL[0;m | |
[32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m | |
[32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m | |
[32;1m$ cmake_args=(-G Ninja)[0;m | |
[32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m | |
[32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m | |
[32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m | |
[32;1m$ mkdir build && cd build[0;m | |
[32;1m$ echo "Building with ${cmake_args[@]}"[0;m | |
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/venv/bin/python | |
[32;1m$ cmake .. "${cmake_args[@]}"[0;m | |
-- The C compiler identification is AppleClang 14.0.0.14000029 | |
-- The CXX compiler identification is AppleClang 14.0.0.14000029 | |
-- Detecting C compiler ABI info | |
-- Detecting C compiler ABI info - done | |
-- Check for working C compiler: /usr/bin/gcc - skipped | |
-- Detecting C compile features | |
-- Detecting C compile features - done | |
-- Detecting CXX compiler ABI info | |
-- Detecting CXX compiler ABI info - done | |
-- Check for working CXX compiler: /usr/bin/g++ - skipped | |
-- Detecting CXX compile features | |
-- Detecting CXX compile features - done | |
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check | |
-- Sub-module : missing external/coding-conventions : running git submodule update --init | |
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions' | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/coding-conventions'... | |
Submodule path 'external/coding-conventions': checked out '80a2c9013463b89b5c426e18403e9a2f87c59a00' | |
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123 | |
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123' | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/Random123'... | |
From https://github.com/BlueBrain/Random123 | |
* branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD | |
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1' | |
-- 3rd party project: using Random123 from "external/Random123" | |
-- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen | |
Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen' | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/eigen'... | |
From https://gitlab.com/libeigen/eigen | |
* branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
-- 3rd party project: using eigen from "external/eigen" | |
-- Enabling sanitizers: address | |
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
-- Checking if /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/venv/bin/python is a working python | |
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") | |
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6") | |
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include | |
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") | |
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") | |
-- Found MPI: TRUE (found version "3.1") | |
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
-- Found Threads: TRUE | |
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11 | |
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11' | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/CLI11'... | |
From https://github.com/CLIUtils/CLI11 | |
* branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD | |
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2' | |
-- 3rd party project: using CLI11 from "external/CLI11" | |
CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required): | |
Compatibility with CMake < 3.5 will be removed from a future version of | |
CMake. | |
Update the VERSION argument <min> value or use a ...<max> suffix to tell | |
CMake that the project does not need compatibility with older versions. | |
-- Building CoreNEURON | |
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") | |
-- Found Perl: /usr/bin/perl (found version "5.30.3") | |
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH) | |
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/nmodl | |
-- CHECKING FOR FLEX/BISON | |
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") | |
-- Adding Flex include path as : /opt/homebrew/opt/flex/include/ | |
-- NMODL_TEST_FORMATTING: OFF | |
-- NMODL_GIT_HOOKS: OFF | |
-- NMODL_GIT_COMMIT_HOOKS: | |
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg | |
-- NMODL_STATIC_ANALYSIS: OFF | |
-- NMODL_TEST_STATIC_ANALYSIS: OFF | |
-- 3rd party project: using eigen from "ext/eigen" | |
-- 3rd party project: using fmt from "ext/fmt" | |
-- Module support is disabled. | |
-- Version: 9.1.0 | |
-- Build type: Custom | |
-- CXX_STANDARD: 17 | |
-- Required features: cxx_variadic_templates | |
-- 3rd party project: using json from "ext/json" | |
CMake Deprecation Warning at external/nmodl/ext/json/CMakeLists.txt:1 (cmake_minimum_required): | |
Compatibility with CMake < 3.5 will be removed from a future version of | |
CMake. | |
Update the VERSION argument <min> value or use a ...<max> suffix to tell | |
CMake that the project does not need compatibility with older versions. | |
-- Using the single-header code from /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/nmodl/ext/json/single_include/ | |
-- 3rd party project: using pybind11 from "ext/pybind11" | |
CMake Deprecation Warning at external/nmodl/ext/pybind11/CMakeLists.txt:8 (cmake_minimum_required): | |
Compatibility with CMake < 3.5 will be removed from a future version of | |
CMake. | |
Update the VERSION argument <min> value or use a ...<max> suffix to tell | |
CMake that the project does not need compatibility with older versions. | |
-- pybind11 v2.9.2 | |
CMake Warning (dev) at external/nmodl/ext/pybind11/tools/FindPythonLibsNew.cmake:98 (find_package): | |
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules | |
are removed. Run "cmake --help-policy CMP0148" for policy details. Use | |
the cmake_policy command to set the policy and suppress this warning. | |
Call Stack (most recent call first): | |
external/nmodl/ext/pybind11/tools/pybind11Tools.cmake:50 (find_package) | |
external/nmodl/ext/pybind11/tools/pybind11Common.cmake:206 (include) | |
external/nmodl/ext/pybind11/CMakeLists.txt:200 (include) | |
This warning is for project developers. Use -Wno-dev to suppress it. | |
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/venv/bin/python (found version "3.10.13") | |
-- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
-- 3rd party project: using spdlog from "ext/spdlog" | |
-- Build spdlog: 1.10.0 | |
-- Build type: Custom | |
-- CHECKING FOR PYTHON | |
CMake Warning (dev) at external/nmodl/CMakeLists.txt:159 (find_package): | |
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules | |
are removed. Run "cmake --help-policy CMP0148" for policy details. Use | |
the cmake_policy command to set the policy and suppress this warning. | |
This warning is for project developers. Use -Wno-dev to suppress it. | |
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.8") | |
-- | |
-- Configured NMODL 0.0 (6c89dc6 2023-11-22 08:34:22 +0100) | |
-- | |
-- You can now build NMODL using: | |
-- cmake --build . --parallel 8 [--target TARGET] | |
-- You might want to adjust the number of parallel build jobs for your system. | |
-- Some non-default targets you might want to build: | |
-- --------------------+-------------------------------------------------------- | |
-- Target | Description | |
-- --------------------+-------------------------------------------------------- | |
-- test | Run unit tests | |
-- install | Will install NMODL to: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install | |
-- --------------------+-------------------------------------------------------- | |
-- Build option | Status | |
-- --------------------+-------------------------------------------------------- | |
-- CXX COMPILER | /usr/bin/g++ | |
-- COMPILE FLAGS | -O1 -g -openmp-simd | |
-- Build Type | Custom | |
-- Python Bindings | ON | |
-- Flex | /opt/homebrew/opt/flex/bin/flex | |
-- Bison | /opt/homebrew/opt/bison/bin/bison | |
-- Python | /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/venv/bin/python | |
-- Linked against | TRUE | |
-- --------------------+-------------------------------------------------------- | |
-- See documentation : https://github.com/BlueBrain/nmodl/ | |
-- --------------------+-------------------------------------------------------- | |
-- | |
-- | |
-- CoreNEURON is enabled with following build configuration: | |
-- --------------------+-------------------------------------------------------- | |
-- Build option | Status | |
-- --------------------+-------------------------------------------------------- | |
-- CXX COMPILER | /usr/bin/g++ | |
-- COMPILE FLAGS | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
-- Build Type | SHARED | |
-- MPI | ON | |
-- DYNAMIC | OFF | |
-- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
-- OpenMP | ON | |
-- NMODL PATH | /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/bin/nmodl | |
-- NMODL FLAGS | | |
-- GPU Support | OFF | |
-- Auto Timeout | ON | |
-- Wrap exp() | OFF | |
-- SplayTree Queue | ON | |
-- NetReceive Buffer | ON | |
-- Caliper | OFF | |
-- Likwid | OFF | |
-- Unit Tests | ON | |
-- Reporting | OFF | |
-- --------------------+-------------------------------------------------------- | |
-- | |
Extracting link flags from target 'nrngnu', beware that this can be fragile. Got: | |
Extracting link flags from target 'sparse13', beware that this can be fragile. Got: | |
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: | |
Generating link flags from path /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib | |
Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
-- Sub-module : missing /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/catch2 : running git submodule update --init | |
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2' | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/external/catch2'... | |
Submodule path 'external/catch2': checked out 'c4e3767e265808590986d5db6ca1b5532a7f3d13' | |
-- Found Python module 'pytest' with version(s): 7.4.4 | |
-- Found Python module 'pytest_cov' with version(s): 4.1.0 | |
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata | |
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata' | |
Cloning into '/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/test/rxd/testdata'... | |
From https://github.com/neuronsimulator/rxdtestdata | |
* branch 30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD | |
Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58' | |
-- 3rd party project: using rxd/testdata from "test/rxd/testdata" | |
-- Found Python module 'mpi4py' with version(s): 3.1.5 | |
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled | |
-- Found Python module 'mpi4py' with version(s): 3.1.5 | |
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled | |
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled | |
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled | |
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled | |
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled | |
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled | |
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled | |
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled | |
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled | |
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled | |
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled | |
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled | |
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled | |
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled | |
-- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0") | |
-- | |
-- Configured NEURON 9.0.0 | |
-- | |
-- You can now build NEURON using: | |
-- cmake --build . --parallel 8 [--target TARGET] | |
-- You might want to adjust the number of parallel build jobs for your system. | |
-- Some non-default targets you might want to build: | |
-- --------------+-------------------------------------------------------------- | |
-- Target | Description | |
-- --------------+-------------------------------------------------------------- | |
-- install | Will install NEURON to: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install | |
-- | Change the install location of NEURON using: | |
-- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path> | |
-- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean | |
-- uninstall | Removes files installed by make install (todo) | |
-- --------------+-------------------------------------------------------------- | |
-- Build option | Status | |
-- --------------+-------------------------------------------------------------- | |
-- C COMPILER | /usr/bin/gcc | |
-- CXX COMPILER | /usr/bin/g++ | |
-- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug) | |
-- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd | |
-- Shared | ON | |
-- MPI | ON | |
-- DYNAMIC | OFF | |
-- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
-- LIB | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
-- Python | ON | |
-- DYNAMIC | OFF | |
-- MODULE | ON | |
-- python3.10 (default) | |
-- EXE | /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/venv/bin/python | |
-- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 | |
-- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
-- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd | |
-- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd | |
-- RX3D | OFF | |
-- Interviews | OFF | |
-- CoreNEURON | ON | |
-- PATH | /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/coreneuron | |
-- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
-- Tests | ON | |
-- --------------+-------------------------------------------------------------- | |
-- See documentation : https://www.neuron.yale.edu/neuron/ | |
-- --------------+-------------------------------------------------------------- | |
-- | |
-- Configuring done (27.6s) | |
-- Generating done (0.1s) | |
-- Build files have been written to: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build | |
[32;1m$ ccache -z[0;m | |
Statistics zeroed | |
[32;1m$ ccache -vs 2>/dev/null[0;m | |
Cache directory: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/ccache | |
Config file: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/ccache/ccache.conf | |
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf | |
Stats updated: Fri Jan 26 15:45:36 2024 | |
Local storage: | |
Cache size (GiB): 0.5 / 5.0 (10.50%) | |
Files: 3782 | |
Hits: 0 | |
Misses: 0 | |
Reads: 0 | |
Writes: 0 | |
[32;1m$ cmake --build . --parallel[0;m | |
[0/2] Re-checking globbed directories... | |
[1/1731] Generating share/nrn/demo/cycle.hoc | |
[2/1731] Generating share/nrn/demo/demo.hoc | |
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[7/1731] Generating share/nrn/demo/dend3/syn3.hoc | |
[8/1731] Generating share/nrn/demo/demo.ses | |
[9/1731] Generating share/nrn/demo/dynchan.ses | |
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[12/1731] Generating share/nrn/demo/hh.ses | |
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[20/1731] Generating share/nrn/demo/release/cabpump.mod | |
[21/1731] Update hh.mod for CoreNEURON compatibility | |
[22/1731] Generating share/nrn/demo/release/cachan1.mod | |
[23/1731] Generating share/nrn/demo/release/invlfire.mod | |
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[30/1731] Generating share/nrn/demo/singhh.hoc | |
[31/1731] Generating share/nrn/demo/singhh.ses | |
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[35/1731] Generating share/nrn/demo/sync/spkplot.hoc | |
[36/1731] Generating share/nrn/demo/sync/start.ses | |
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[38/1731] Generating share/nrn/lib/auditscripts/hocaudit.sh | |
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[44/1731] Generating share/nrn/lib/helpdict | |
[45/1731] Generating share/nrn/lib/auditscripts/retrieve.sh | |
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56 | %define parser_class_name {DiffeqParser} | |
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49 | %define parser_class_name {UnitParser} | |
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52 | %define parser_class_name {CParser} | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| %define api.parser.class {CParser} | |
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[576/1731] Generating ../../include/nrncvode/nrnneosm.h | |
[577/1731] Generating ../../include/nrnconf.h | |
[578/1731] Generating unit_tests/python_unit_tests/test/unit_tests/hoc_python/test_StringFunctions.py | |
[579/1731] Generating coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py | |
[580/1731] Generating nrniv_script.py/do_nothing.py | |
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[582/1731] Generating nrniv_two_scripts.py/do_nothing.py | |
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[585/1731] Generating nrniv_two_scripts.py_error_check_output/assert_false.py | |
[586/1731] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o | |
[587/1731] Generating nrniv_two_scripts.py_error_check_output/do_nothing.py | |
[588/1731] Generating nrniv_python_script.py/do_nothing.py | |
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[592/1731] Generating nrniv_py3.10_python_check_sys_path/dump_sys_attr.py | |
[593/1731] Generating nrniv_python_script.py_args/assert_last_args_are_foo_and_bar.py | |
[594/1731] Generating nrniv_py3.10_python_check_sys_path/check_sys_attr.py | |
[595/1731] Generating nrniv_py3.10_nrnpython_check_sys_path/check_sys_attr.hoc | |
[596/1731] Generating nrniv_py3.10_nrnpython_check_sys_path/dump_sys_attr.py | |
[597/1731] Generating nrniv_py3.10_python_check_sys_prefix/check_sys_attr.py | |
[598/1731] Generating nrniv_py3.10_nrnpython_check_sys_prefix/check_sys_attr.hoc | |
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[602/1731] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc | |
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[607/1731] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/check_sys_attr.hoc | |
[608/1731] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/check_sys_attr.py | |
[609/1731] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/dump_sys_attr.py | |
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[611/1731] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc | |
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[613/1731] Generating nrniv_py3.10_python_check_sys_stderr.encoding/check_sys_attr.py | |
[614/1731] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o | |
[615/1731] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc | |
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[620/1731] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc | |
[621/1731] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py | |
[622/1731] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc | |
[623/1731] Generating nrniv_py3.10_python_check_sys_stdout.encoding/check_sys_attr.py | |
[624/1731] Generating nrniv_py3.10_python_check_sys_stdout.encoding/dump_sys_attr.py | |
[625/1731] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py | |
[626/1731] Generating nrniv_pydef_python_check_sys_path/check_sys_attr.py | |
[627/1731] Generating nrniv_pydef_python_check_sys_path/dump_sys_attr.py | |
[628/1731] Generating nrniv_pydef_nrnpython_check_sys_path/check_sys_attr.hoc | |
[629/1731] Generating nrniv_pydef_python_check_sys_prefix/check_sys_attr.py | |
[630/1731] Generating nrniv_pydef_nrnpython_check_sys_path/dump_sys_attr.py | |
[631/1731] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o | |
[632/1731] Generating nrniv_pydef_python_check_sys_prefix/dump_sys_attr.py | |
[633/1731] Generating nrniv_pydef_nrnpython_check_sys_prefix/check_sys_attr.hoc | |
[634/1731] Generating nrniv_pydef_nrnpython_check_sys_prefix/dump_sys_attr.py | |
[635/1731] Generating nrniv_pydef_python_check_sys_exec_prefix/dump_sys_attr.py | |
[636/1731] Linking CXX shared library lib/librxdmath.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
[637/1731] Generating nrniv_pydef_python_check_sys_exec_prefix/check_sys_attr.py | |
[638/1731] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc | |
[639/1731] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/dump_sys_attr.py | |
[640/1731] Generating nrniv_pydef_python_check_sys_base_prefix/check_sys_attr.py | |
[641/1731] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/check_sys_attr.hoc | |
[642/1731] Generating nrniv_pydef_python_check_sys_base_prefix/dump_sys_attr.py | |
[643/1731] Generating nrniv_pydef_python_check_sys_base_exec_prefix/dump_sys_attr.py | |
[644/1731] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/dump_sys_attr.py | |
[645/1731] Generating nrniv_pydef_python_check_sys_base_exec_prefix/check_sys_attr.py | |
[646/1731] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc | |
[647/1731] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py | |
[648/1731] Generating nrniv_pydef_python_check_sys_stderr.encoding/check_sys_attr.py | |
[649/1731] Generating nrniv_pydef_python_check_sys_stderr.encoding/dump_sys_attr.py | |
[650/1731] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py | |
[651/1731] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc | |
[652/1731] Generating nrniv_pydef_python_check_sys_stdin.encoding/check_sys_attr.py | |
[653/1731] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc | |
[654/1731] Generating nrniv_pydef_python_check_sys_stdin.encoding/dump_sys_attr.py | |
[655/1731] Generating nrniv_pydef_python_check_sys_stdout.encoding/dump_sys_attr.py | |
[656/1731] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc | |
[657/1731] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py | |
[658/1731] Generating nrniv_pydef_python_check_sys_stdout.encoding/check_sys_attr.py | |
[659/1731] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/logger.cpp.o | |
[660/1731] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py | |
[661/1731] Generating ../../compare_test_results.py | |
[662/1731] Generating ../tests/testcorenrn/reference/out_bbcore.spk | |
[663/1731] Generating ../tests/ringtest/reference_data/spk1.100ms.std.ref | |
[664/1731] Generating ../tests/testcorenrn/reference/out_deriv.spk | |
[665/1731] Generating ../tests/testcorenrn/reference/out_gf.spk | |
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[667/1731] Generating ../tests/testcorenrn/reference/out_vecevent.spk | |
[668/1731] Generating ../tests/testcorenrn/reference/out_kin.spk | |
[669/1731] Generating ../tests/testcorenrn/reference/out_vecplay.spk | |
[670/1731] Generating ../tests/testcorenrn/reference/out_patstim.spk | |
[671/1731] Generating ../tests/testcorenrn/reference/out_watch.spk | |
[672/1731] Generating ../tests/testcorenrn/reference/out_netstimdirect.spk | |
[673/1731] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/nocpout.cpp.o | |
[674/1731] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o | |
[675/1731] Linking CXX static library lib/libutil.a | |
[676/1731] -- NMODL : GENERATING C(11) LEXER WITH FLEX! -- | |
[677/1731] -- NMODL : GENERATING NMODL LEXER WITH FLEX! -- | |
../../../../../external/nmodl/src/lexer/nmodl.ll:503: warning, -s option given but default rule can be matched | |
[678/1731] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! -- | |
[679/1731] -- NMODL : GENERATING UNIT LEXER WITH FLEX! -- | |
../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched | |
[680/1731] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! -- | |
../../../../../external/nmodl/src/lexer/diffeq.ll:100: warning, -s option given but default rule can be matched | |
[681/1731] Linking CXX static library lib/libpyembed.a | |
[682/1731] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_transform_visitor.cpp.o | |
[683/1731] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_info.cpp.o | |
[684/1731] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/token_mapping.cpp.o | |
[685/1731] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_utils.cpp.o | |
[686/1731] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/modtoken.cpp.o | |
[687/1731] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_acc_visitor.cpp.o | |
[688/1731] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/verbatim_lexer.cpp.o | |
[689/1731] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/diffeq_base_lexer.cpp.o | |
[690/1731] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_compatibility_visitor.cpp.o | |
[691/1731] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_utils.cpp.o | |
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[693/1731] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_driver.cpp.o | |
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[701/1731] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit_driver.cpp.o | |
[702/1731] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq/diffeq_parser.cpp.o | |
[703/1731] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c/c11_parser.cpp.o | |
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[717/1731] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_cpp_visitor.cpp.o | |
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[724/1731] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/neuron_solve_visitor.cpp.o | |
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[742/1731] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/visitor_utils.cpp.o | |
[743/1731] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/nmodl_visitor.cpp.o | |
[744/1731] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_replace_solutions_visitor.cpp.o | |
[745/1731] Linking CXX executable bin/nocmodl | |
[746/1731] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_conductance_visitor.cpp.o | |
[747/1731] Generating ../nrnoc/apcount.cpp | |
Translating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/apcount.cpp | |
Thread Safe | |
[748/1731] Generating ../nrnoc/exp2syn.cpp | |
Translating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp | |
Thread Safe | |
[749/1731] Generating ../nrnoc/feature.cpp | |
Translating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/feature.cpp | |
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[750/1731] Generating ../nrnoc/expsyn.cpp | |
Translating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/expsyn.cpp | |
Thread Safe | |
[751/1731] Generating ../nrnoc/hh.cpp | |
Translating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/hh.cpp | |
Thread Safe | |
[752/1731] Generating ../nrnoc/intfire1.cpp | |
Translating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/intfire1.cpp | |
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[753/1731] Generating ../nrnoc/intfire2.cpp | |
Translating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/intfire2.cpp | |
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[754/1731] Generating ../nrnoc/intfire4.cpp | |
Translating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/intfire4.cpp | |
Thread Safe | |
[755/1731] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/symtab_visitor.cpp.o | |
[756/1731] Generating ../nrnoc/netstim.cpp | |
Translating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/netstim.cpp | |
Thread Safe | |
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
only affects and is affected by discrete events. As such it is not | |
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Translating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/oclmp.cpp | |
Thread Safe | |
[758/1731] Generating ../nrnoc/pattern.cpp | |
Translating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/src/nrnoc/pattern.cpp | |
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[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
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INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS | |
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk | |
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INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'}) | |
INFO:root:RX3D is DISABLED | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. | |
!! | |
******************************************************************************** | |
Requirements should be satisfied by a PEP 517 installer. | |
If you are using pip, you can try `pip install --use-pep517`. | |
******************************************************************************** | |
!! | |
dist.fetch_build_eggs(dist.setup_requires) | |
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn" is shallow and may cause errors | |
warnings.warn(f'"{wd.path}" is shallow and may cause errors') | |
INFO:root:running build | |
INFO:root:running build_py | |
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:creating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:creating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:creating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
INFO:root:creating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:creating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
INFO:root:creating /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:running build_ext | |
INFO:root:==> Building Python extensions | |
INFO:root:building 'neuron.hoc' extension | |
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17 | |
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../ | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
INFO:root:running build_scripts | |
INFO:root:creating build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10 | |
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755 | |
[1052/1731] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/container.cpp.o | |
[1053/1731] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/generic_data_handle.cpp.o | |
[1054/1731] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/nrn/demo/release | |
cfiles = | |
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o | |
-> Compiling mod_func.cpp | |
-> NMODL ../cachan1.mod | |
-> NMODL ../cabpump.mod | |
-> NMODL ../camchan.mod | |
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp | |
Translating camchan.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp | |
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp | |
Thread Safe | |
Thread Safe | |
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
-> NMODL ../capump.mod | |
-> NMODL ../invlfire.mod | |
-> NMODL ../khhchan.mod | |
Translating capump.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp | |
Thread Safe | |
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp | |
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp | |
-> NMODL ../nacaex.mod | |
Thread Safe | |
Thread Safe | |
-> NMODL ../nachan.mod | |
-> NMODL ../release.mod | |
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp | |
Thread Safe | |
-> Compiling cabpump.cpp | |
Translating nachan.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp | |
Thread Safe | |
Translating release.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp | |
Thread Safe | |
-> Compiling cachan1.cpp | |
-> Compiling camchan.cpp | |
-> Compiling capump.cpp | |
-> Compiling invlfire.cpp | |
-> Compiling khhchan.cpp | |
-> Compiling nacaex.cpp | |
-> Compiling nachan.cpp | |
-> Compiling release.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1055/1731] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/utils/enumerate.cpp.o | |
[1056/1731] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/mechanism.cpp.o | |
[1057/1731] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/oc/hoc_interpreter.cpp.o | |
[1058/1731] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/benchmarks/threads/test_multicore.cpp.o | |
[1059/1731] Generating nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/mcna.mod | |
[1060/1731] Building CXX object test/coreneuron/unit/cmdline_interface/CMakeFiles/cmd_interface_test_bin.dir/test_cmdline_interface.cpp.o | |
[1061/1731] Building CXX object test/coreneuron/unit/interleave_info/CMakeFiles/interleave_info_bin.dir/check_constructors.cpp.o | |
[1062/1731] Linking CXX executable bin/cmd_interface_test_bin | |
[1063/1731] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/follower.mod | |
[1064/1731] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/gap.mod | |
[1065/1731] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/name_clashes.mod | |
[1066/1731] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/unitstest.mod | |
[1067/1731] Linking CXX executable bin/interleave_info_bin | |
[1068/1731] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/version_macros.mod | |
[1069/1731] Generating nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/opaque_token.mod | |
[1070/1731] Generating nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/ptr.mod | |
[1071/1731] Building CXX object test/coreneuron/unit/alignment/CMakeFiles/alignment_test_bin.dir/alignment.cpp.o | |
[1072/1731] Linking CXX executable bin/alignment_test_bin | |
[1073/1731] Generating nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/ppxsrc.mod | |
[1074/1731] Building CXX object test/coreneuron/unit/queueing/CMakeFiles/queuing_test_bin.dir/test_queueing.cpp.o | |
[1075/1731] Linking CXX executable bin/queuing_test_bin | |
[1076/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/argpass.mod | |
[1077/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cabpump.mod | |
[1078/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cachan.mod | |
[1079/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacum.mod | |
[1080/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacur.mod | |
[1081/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadif.mod | |
[1082/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadifusl.mod | |
[1083/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagk.mod | |
[1084/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagkftab.mod | |
[1085/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/capmp.mod | |
[1086/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/expsynspine.mod | |
[1087/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fh.mod | |
[1088/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fit1.mod | |
[1089/1731] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/node.cpp.o | |
[1090/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/gap.mod | |
[1091/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hh1.mod | |
[1092/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hhvect.mod | |
[1093/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/inatest.mod | |
[1094/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod | |
[1095/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod | |
[1096/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod | |
[1097/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod | |
[1098/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod | |
[1099/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod | |
[1100/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod | |
[1101/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod | |
[1102/1731] Building special[-core] for test group datahandle | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453 | |
cfiles = | |
Mod files: "./opaque_token.mod" "./ptr.mod" | |
MODOBJS= ./opaque_token.o ./ptr.o | |
-> Compiling mod_func.cpp | |
-> NMODL .././opaque_token.mod | |
-> NMODL .././ptr.mod | |
Translating ptr.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp | |
Notice: Use of POINTER is not thread safe. | |
Translating opaque_token.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp | |
Notice: VERBATIM blocks are not thread safe | |
-> Compiling ptr.cpp | |
-> Compiling opaque_token.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1103/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod | |
[1104/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc | |
[1105/1731] Generating datahandle/datahandle_tests/test/datahandle/test_1.py | |
[1106/1731] Generating datahandle/datahandle_tests/test/datahandle/test_token.py | |
[1107/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod | |
[1108/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod | |
[1109/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod | |
[1110/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod | |
[1111/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod | |
[1112/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod | |
[1113/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod | |
[1114/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod | |
[1115/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod | |
[1116/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod | |
[1117/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod | |
[1118/1731] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod | |
[1119/1731] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/atest.mod | |
[1120/1731] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata.inc | |
[1121/1731] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata.mod | |
[1122/1731] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_pp.mod | |
[1123/1731] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_ppts.mod | |
[1124/1731] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_ts.mod | |
[1125/1731] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod | |
[1126/1731] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod | |
[1127/1731] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod | |
[1128/1731] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod | |
[1129/1731] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod | |
[1130/1731] Building CXX object test/coreneuron/unit/lfp/CMakeFiles/lfp_test_bin.dir/lfp.cpp.o | |
[1131/1731] Linking CXX executable bin/lfp_test_bin | |
[1132/1731] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod | |
[1133/1731] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod | |
[1134/1731] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod | |
[1135/1731] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod | |
[1136/1731] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod | |
[1137/1731] Building special[-core] for test group pytest | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c | |
cfiles = | |
Mod files: "./mcna.mod" | |
MODOBJS= ./mcna.o | |
-> Compiling mod_func.cpp | |
-> NMODL .././mcna.mod | |
Translating mcna.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp | |
Thread Safe | |
-> Compiling mcna.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1138/1731] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod | |
[1139/1731] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json | |
[1140/1731] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py | |
[1141/1731] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod | |
[1142/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial.inc | |
[1143/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial.mod | |
[1144/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial_pp.mod | |
[1145/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/bacur.mod | |
[1146/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/banocur.mod | |
[1147/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/fornetcon.mod | |
[1148/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/invlfire.mod | |
[1149/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/natrans.mod | |
[1150/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/netmove.mod | |
[1151/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/sample.mod | |
[1152/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/unitstest.mod | |
[1153/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/version_macros.mod | |
[1154/1731] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/watchrange.mod | |
[1155/1731] Building special[-core] for test group coverage_tests | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51 | |
cfiles = | |
Mod files: "./ppxsrc.mod" | |
MODOBJS= ./ppxsrc.o | |
-> Compiling mod_func.cpp | |
-> NMODL .././ppxsrc.mod | |
Translating ppxsrc.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp | |
Thread Safe | |
-> Compiling ppxsrc.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1156/1731] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json | |
[1157/1731] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py | |
[1158/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod | |
[1159/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod | |
[1160/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod | |
[1161/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod | |
[1162/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod | |
[1163/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod | |
[1164/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod | |
[1165/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod | |
[1166/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod | |
[1167/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod | |
[1168/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod | |
[1169/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod | |
[1170/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod | |
[1171/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod | |
[1172/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod | |
[1173/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod | |
[1174/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod | |
[1175/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod | |
[1176/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod | |
[1177/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod | |
[1178/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod | |
[1179/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod | |
[1180/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod | |
[1181/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod | |
[1182/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod | |
[1183/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod | |
[1184/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod | |
[1185/1731] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod | |
[1186/1731] Building CXX object test/coreneuron/unit/solver/CMakeFiles/test-solver.dir/test_solver.cpp.o | |
[1187/1731] Linking CXX executable bin/test-solver | |
[1188/1731] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod | |
[1189/1731] Building special[-core] for test group parallel | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100 | |
cfiles = | |
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o | |
-> Compiling mod_func.cpp | |
-> NMODL .././follower.mod | |
-> NMODL .././gap.mod | |
-> NMODL .././name_clashes.mod | |
Translating follower.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp | |
Thread Safe | |
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp | |
Thread Safe | |
Translating gap.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp | |
Thread Safe | |
-> NMODL .././unitstest.mod | |
-> NMODL .././version_macros.mod | |
-> Compiling follower.cpp | |
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp | |
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp | |
Thread Safe | |
Thread Safe | |
-> Compiling gap.cpp | |
-> Compiling name_clashes.cpp | |
-> Compiling unitstest.cpp | |
-> Compiling version_macros.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1190/1731] Generating parallel/subworld/test/parallel_tests/test_subworld.py | |
[1191/1731] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py | |
[1192/1731] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py | |
[1193/1731] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py | |
[1194/1731] Generating parallel/bas/test/parallel_tests/test_bas.py | |
[1195/1731] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py | |
[1196/1731] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json | |
[1197/1731] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py | |
[1198/1731] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod | |
[1199/1731] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod | |
[1200/1731] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod | |
[1201/1731] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod | |
[1202/1731] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod | |
[1203/1731] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod | |
[1204/1731] Building CXX object test/CMakeFiles/testneuron.dir/common/catch2_main.cpp.o | |
[1205/1731] Building special[-core] for test group hoctests | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f | |
cfiles = | |
Mod files: "./atest.mod" "./sdata.mod" "./sdata_pp.mod" "./sdata_ppts.mod" "./sdata_ts.mod" | |
MODOBJS= ./atest.o ./sdata.o ./sdata_pp.o ./sdata_ppts.o ./sdata_ts.o | |
-> Compiling mod_func.cpp | |
-> NMODL .././atest.mod | |
-> NMODL .././sdata_pp.mod | |
-> NMODL .././sdata.mod | |
Translating sdata_pp.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_pp.cpp | |
INCLUDEing sdata.inc | |
Notice: Use of POINTER is not thread safe. | |
Notice: VERBATIM blocks are not thread safe | |
Translating sdata.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata.cpp | |
Translating atest.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/atest.cpp | |
INCLUDEing sdata.inc | |
Notice: Use of POINTER is not thread safe. | |
Notice: VERBATIM blocks are not thread safe | |
Thread Safe | |
-> NMODL .././sdata_ppts.mod | |
-> NMODL .././sdata_ts.mod | |
Translating sdata_ppts.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_ppts.cpp | |
INCLUDEing sdata.inc | |
Thread Safe | |
Translating sdata_ts.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_ts.cpp | |
INCLUDEing sdata.inc | |
Thread Safe | |
-> Compiling atest.cpp | |
-> Compiling sdata.cpp | |
-> Compiling sdata_pp.cpp | |
-> Compiling sdata_ppts.cpp | |
-> Compiling sdata_ts.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1206/1731] Generating hoctests/test_loadbal_hoc/expect_err.hoc | |
[1207/1731] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc | |
[1208/1731] Generating hoctests/perf1_hoc/expect_err.hoc | |
[1209/1731] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc | |
[1210/1731] Generating hoctests/test1_hoc/expect_err.hoc | |
[1211/1731] Generating hoctests/test1_hoc/vardimtests/test1.hoc | |
[1212/1731] Generating hoctests/test2_hoc/expect_err.hoc | |
[1213/1731] Linking CXX executable bin/test/testneuron | |
[1214/1731] Generating hoctests/test2_hoc/vardimtests/test2.hoc | |
[1215/1731] Generating hoctests/test3_hoc/expect_err.hoc | |
[1216/1731] Generating hoctests/test3_hoc/vardimtests/test3.hoc | |
[1217/1731] Generating hoctests/test4_hoc/expect_err.hoc | |
[1218/1731] Generating hoctests/test4_hoc/vardimtests/test4.hoc | |
[1219/1731] Generating hoctests/test5_hoc/expect_err.hoc | |
[1220/1731] Generating hoctests/test5_hoc/vardimtests/test5.hoc | |
[1221/1731] Generating hoctests/test6_hoc/expect_err.hoc | |
[1222/1731] Generating hoctests/test6_hoc/vardimtests/test6.hoc | |
[1223/1731] Generating hoctests/test7_hoc/expect_err.hoc | |
[1224/1731] Generating hoctests/test7_hoc/vardimtests/test7.hoc | |
[1225/1731] Generating hoctests/test8_hoc/expect_err.hoc | |
[1226/1731] Generating hoctests/test8_hoc/vardimtests/test8.hoc | |
[1227/1731] Generating hoctests/test9_hoc/expect_err.hoc | |
[1228/1731] Generating hoctests/test9_hoc/vardimtests/test9.hoc | |
[1229/1731] Generating hoctests/test_cvinterp_py/tests/test_cvinterp.py | |
[1230/1731] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py | |
[1231/1731] Generating hoctests/test_kschan_py/tests/test_kschan.json | |
[1232/1731] Generating hoctests/test_kschan_py/tests/test_kschan.py | |
[1233/1731] Generating hoctests/test_mechfunc_py/tests/test_mechfunc.py | |
[1234/1731] Generating hoctests/test_mode_py/tests/test_mode.py | |
[1235/1731] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json | |
[1236/1731] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py | |
[1237/1731] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py | |
[1238/1731] Generating hoctests/test_setdata_py/tests/test_setdata.py | |
[1239/1731] Generating hoctests/test_shape_py/tests/test_shape.py | |
[1240/1731] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py | |
[1241/1731] Generating hoctests/test1_py/vardimtests/test1.py | |
[1242/1731] Generating hoctests/test2_py/vardimtests/test2.py | |
[1243/1731] Generating hoctests/test9_py/vardimtests/test9.py | |
[1244/1731] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfire.mod | |
[1245/1731] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfiresha.mod | |
[1246/1731] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfirestats.mod | |
[1247/1731] Building special[-core] for test group nmodl_tests | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5 | |
cfiles = | |
Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod" | |
MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o | |
-> Compiling mod_func.cpp | |
-> NMODL .././cadif.mod | |
-> NMODL .././disc.mod | |
-> NMODL .././fornetcon.mod | |
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp | |
Thread Safe | |
-> NMODL .././hhwatch.mod | |
Translating disc.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp | |
Translating cadif.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp | |
Thread Safe | |
Notice: DISCRETE is not thread safe. | |
Notice: This mechanism cannot be used with CVODE | |
-> NMODL .././k3st.mod | |
-> NMODL .././table.mod | |
Translating k3st.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp | |
NEURON's CVode method ignores conservation | |
Thread Safe | |
-> NMODL .././variabletypes.mod | |
Translating table.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp | |
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp | |
Thread Safe | |
Thread Safe | |
-> Compiling cadif.cpp | |
-> Compiling disc.cpp | |
Translating variabletypes.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp | |
Thread Safe | |
-> Compiling fornetcon.cpp | |
-> Compiling hhwatch.cpp | |
-> Compiling k3st.cpp | |
-> Compiling table.cpp | |
-> Compiling variabletypes.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1248/1731] Generating nmodl_tests/test_table/test/nmodl/test_table.py | |
[1249/1731] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py | |
[1250/1731] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py | |
[1251/1731] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py | |
[1252/1731] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py | |
[1253/1731] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py | |
[1254/1731] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py | |
[1255/1731] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py | |
[1256/1731] Building special[-core] for test group pytest_coreneuron | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0 | |
cfiles = | |
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o | |
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
Default NMODL flags: | |
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/follower.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gap.mod | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/name_clashes.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> Binary creating arm64/special-core | |
[INFO] MOD files built successfully for CoreNEURON | |
-> NMODL .././gap.mod | |
-> Compiling mod_func.cpp | |
-> NMODL .././follower.mod | |
-> NMODL .././name_clashes.mod | |
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp | |
Translating follower.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp | |
Thread Safe | |
-> NMODL .././unitstest.mod | |
Thread Safe | |
-> NMODL .././version_macros.mod | |
Translating gap.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp | |
Thread Safe | |
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp | |
-> Compiling follower.cpp | |
Thread Safe | |
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp | |
Thread Safe | |
-> Compiling gap.cpp | |
-> Compiling name_clashes.cpp | |
-> Compiling unitstest.cpp | |
-> Compiling version_macros.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1257/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py | |
[1258/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py | |
[1259/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py | |
[1260/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py | |
[1261/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py | |
[1262/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py | |
[1263/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py | |
[1264/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py | |
[1265/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py | |
[1266/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py | |
[1267/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py | |
[1268/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py | |
[1269/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py | |
[1270/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py | |
[1271/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json | |
[1272/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py | |
[1273/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py | |
[1274/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py | |
[1275/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py | |
[1276/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py | |
[1277/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py | |
[1278/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py | |
[1279/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py | |
[1280/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py | |
[1281/1731] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py | |
[1282/1731] Building special[-core] for test group external_ringtest | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff | |
cfiles = | |
Mod files: "./halfgap.mod" | |
MODOBJS= ./halfgap.o | |
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
Default NMODL flags: | |
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/halfgap.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running C++ backend code generator | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> Binary creating arm64/special-core | |
[INFO] MOD files built successfully for CoreNEURON | |
-> Compiling mod_func.cpp | |
-> NMODL .././halfgap.mod | |
Translating halfgap.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp | |
Thread Safe | |
-> Compiling halfgap.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1283/1731] Generating ../../external_ringtest/neuron/args.py | |
[1284/1731] Generating ../../external_ringtest/neuron/cell.hoc | |
[1285/1731] Generating ../../external_ringtest/neuron/celluniform.hoc | |
[1286/1731] Generating ../../external_ringtest/neuron/commonutils.py | |
[1287/1731] Generating ../../external_ringtest/neuron/ranparm.py | |
[1288/1731] Generating ../../external_ringtest/neuron/ring.py | |
[1289/1731] Generating ../../external_ringtest/neuron/ringtest.py | |
[1290/1731] Generating ../../external_ringtest/neuron/ringuniform.py | |
[1291/1731] Generating ../../external_ringtest/neuron/settings.py | |
[1292/1731] Generating ../../external_ringtest/neuron_mpi/args.py | |
[1293/1731] Generating ../../external_ringtest/neuron_mpi/cell.hoc | |
[1294/1731] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc | |
[1295/1731] Generating ../../external_ringtest/neuron_mpi/ranparm.py | |
[1296/1731] Generating ../../external_ringtest/neuron_mpi/commonutils.py | |
[1297/1731] Generating ../../external_ringtest/neuron_mpi/ring.py | |
[1298/1731] Generating ../../external_ringtest/neuron_mpi/ringtest.py | |
[1299/1731] Generating ../../external_ringtest/neuron_mpi/ringuniform.py | |
[1300/1731] Generating ../../external_ringtest/neuron_mpi/settings.py | |
[1301/1731] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py | |
[1302/1731] Generating ../../external_ringtest/neuron_mpi_python/args.py | |
[1303/1731] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc | |
[1304/1731] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc | |
[1305/1731] Generating ../../external_ringtest/neuron_mpi_python/ring.py | |
[1306/1731] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py | |
[1307/1731] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py | |
[1308/1731] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py | |
[1309/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py | |
[1310/1731] Generating ../../external_ringtest/neuron_mpi_python/settings.py | |
[1311/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc | |
[1312/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc | |
[1313/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py | |
[1314/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py | |
[1315/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py | |
[1316/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py | |
[1317/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py | |
[1318/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py | |
[1319/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py | |
[1320/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc | |
[1321/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc | |
[1322/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py | |
[1323/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py | |
[1324/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py | |
[1325/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py | |
[1326/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py | |
[1327/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py | |
[1328/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py | |
[1329/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc | |
[1330/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc | |
[1331/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py | |
[1332/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py | |
[1333/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py | |
[1334/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py | |
[1335/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py | |
[1336/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py | |
[1337/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py | |
[1338/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc | |
[1339/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc | |
[1340/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py | |
[1341/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py | |
[1342/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py | |
[1343/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py | |
[1344/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py | |
[1345/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py | |
[1346/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc | |
[1347/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py | |
[1348/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc | |
[1349/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py | |
[1350/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py | |
[1351/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py | |
[1352/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py | |
[1353/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py | |
[1354/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py | |
[1355/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py | |
[1356/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc | |
[1357/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc | |
[1358/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py | |
[1359/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py | |
[1360/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py | |
[1361/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py | |
[1362/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py | |
[1363/1731] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py | |
[1364/1731] Building special[-core] for test group tqperf | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951 | |
cfiles = | |
Mod files: "./invlfire.mod" "./invlfiresha.mod" "./invlfirestats.mod" | |
MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o | |
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build INCFLAGS=-I/opt/homebrew/Cellar/openssl@3/3.2.0_1/include LINKFLAGS=/opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
Default NMODL flags: | |
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfire.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to specify_invl | |
[NMODL] [warning] :: Can not inline function call to specify_invl | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfiresha.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfirestats.mod | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to specify_invl | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: Can not inline function call to specify_invl | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to specify_invl | |
[NMODL] [warning] :: Can not inline function call to specify_invl | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
arm64/corenrn/mod2c/invlfiresha.cpp:307:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations] | |
int status = SHA1_Init((SHA_CTX*)(*ctx)); | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here | |
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c); | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
# define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
# define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
^ | |
arm64/corenrn/mod2c/invlfiresha.cpp:312:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations] | |
int status = SHA1_Update((SHA_CTX*)ctx, data, len); | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here | |
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len); | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
# define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
# define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
^ | |
arm64/corenrn/mod2c/invlfiresha.cpp:323:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations] | |
int status = SHA1_Final(u.md, (SHA_CTX*)ctx); | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here | |
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c); | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
# define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
# define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
^ | |
3 warnings generated. | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> Binary creating arm64/special-core | |
[INFO] MOD files built successfully for CoreNEURON | |
-> Compiling mod_func.cpp | |
-> NMODL .././invlfire.mod | |
-> NMODL .././invlfiresha.mod | |
-> NMODL .././invlfirestats.mod | |
Translating invlfiresha.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp | |
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp | |
Thread Safe | |
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
only affects and is affected by discrete events. As such it is not | |
located in a section and is not associated with an integrator | |
Translating invlfirestats.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp | |
Thread Safe | |
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
only affects and is affected by discrete events. As such it is not | |
located in a section and is not associated with an integrator | |
-> Compiling invlfiresha.cpp | |
-> Compiling invlfirestats.cpp | |
Thread Safe | |
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
only affects and is affected by discrete events. As such it is not | |
located in a section and is not associated with an integrator | |
-> Compiling invlfire.cpp | |
invlfiresha.cpp:358:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations] | |
int status = SHA1_Init((SHA_CTX*)(*ctx)); | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here | |
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c); | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
# define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
# define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
^ | |
invlfiresha.cpp:363:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations] | |
int status = SHA1_Update((SHA_CTX*)ctx, data, len); | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here | |
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len); | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
# define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
# define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
^ | |
invlfiresha.cpp:374:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations] | |
int status = SHA1_Final(u.md, (SHA_CTX*)ctx); | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here | |
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c); | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
# define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
^ | |
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
# define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
^ | |
3 warnings generated. | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1365/1731] Generating ../../tqperf/coreneuron_special/extracell.hoc | |
[1366/1731] Generating ../../tqperf/coreneuron_special/init.hoc | |
[1367/1731] Generating ../../tqperf/coreneuron_special/invl.hoc | |
[1368/1731] Generating ../../tqperf/coreneuron_special/mosinit.hoc | |
[1369/1731] Generating ../../tqperf/coreneuron_special/movie.hoc | |
[1370/1731] Generating ../../tqperf/coreneuron_special/net.hoc | |
[1371/1731] Generating ../../tqperf/coreneuron_special/param.hoc | |
[1372/1731] Generating ../../tqperf/coreneuron_special/perfrun.hoc | |
[1373/1731] Generating ../../tqperf/coreneuron_special/pltq.hoc | |
[1374/1731] Generating ../../tqperf/coreneuron_special/randist.hoc | |
[1375/1731] Generating ../../tqperf/coreneuron_special/run.hoc | |
[1376/1731] Generating ../../tqperf/coreneuron_special/runs.hoc | |
[1377/1731] Generating ../../tqperf/coreneuron_special/spike2file.hoc | |
[1378/1731] Generating ../../tqperf/coreneuron_special/run128.hoc | |
[1379/1731] Generating ../../tqperf/coreneuron_special/spkplt.hoc | |
[1380/1731] Generating ../../tqperf/coreneuron_special/table.hoc | |
[1381/1731] Generating ../../tqperf/coreneuron_special/test1.py | |
[1382/1731] Generating ../../tqperf/coreneuron_special/tperf.hoc | |
[1383/1731] Generating ../../tqperf/coreneuron_special/tperfnew.hoc | |
[1384/1731] Generating ../../tqperf/coreneuron_python/extracell.hoc | |
[1385/1731] Generating ../../tqperf/coreneuron_python/init.hoc | |
[1386/1731] Generating ../../tqperf/coreneuron_python/invl.hoc | |
[1387/1731] Generating ../../tqperf/coreneuron_python/mosinit.hoc | |
[1388/1731] Generating ../../tqperf/coreneuron_python/movie.hoc | |
[1389/1731] Generating ../../tqperf/coreneuron_python/net.hoc | |
[1390/1731] Generating ../../tqperf/coreneuron_python/param.hoc | |
[1391/1731] Generating ../../tqperf/coreneuron_python/perfrun.hoc | |
[1392/1731] Generating ../../tqperf/coreneuron_python/pltq.hoc | |
[1393/1731] Generating ../../tqperf/coreneuron_python/randist.hoc | |
[1394/1731] Generating ../../tqperf/coreneuron_python/run.hoc | |
[1395/1731] Generating ../../tqperf/coreneuron_python/run128.hoc | |
[1396/1731] Generating ../../tqperf/coreneuron_python/spike2file.hoc | |
[1397/1731] Generating ../../tqperf/coreneuron_python/spkplt.hoc | |
[1398/1731] Generating ../../tqperf/coreneuron_python/runs.hoc | |
[1399/1731] Generating ../../tqperf/coreneuron_python/table.hoc | |
[1400/1731] Generating ../../tqperf/coreneuron_python/test1.py | |
[1401/1731] Generating ../../tqperf/coreneuron_python/tperf.hoc | |
[1402/1731] Generating ../../tqperf/coreneuron_python/tperfnew.hoc | |
[1403/1731] Building special[-core] for test group testcorenrn_bbcore | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876 | |
cfiles = | |
Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod" | |
MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o | |
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
Default NMODL flags: | |
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhderiv.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhkin.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse | |
[NMODL] [info] :: Running sympy solve visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhwatch.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nacum.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> Binary creating arm64/special-core | |
[INFO] MOD files built successfully for CoreNEURON | |
-> Compiling mod_func.cpp | |
-> NMODL .././Gfluct3.mod | |
-> NMODL .././hhderiv.mod | |
-> NMODL .././hhkin.mod | |
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp | |
Translating hhderiv.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp | |
Thread Safe | |
Thread Safe | |
Translating hhkin.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp | |
-> NMODL .././hhwatch.mod | |
-> NMODL .././nacum.mod | |
Thread Safe | |
-> NMODL .././vecevent.mod | |
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp | |
Thread Safe | |
Translating nacum.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp | |
Thread Safe | |
-> Compiling Gfluct3.cpp | |
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp | |
Thread Safe | |
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
only affects and is affected by discrete events. As such it is not | |
located in a section and is not associated with an integrator | |
-> Compiling hhderiv.cpp | |
-> Compiling hhkin.cpp | |
-> Compiling hhwatch.cpp | |
-> Compiling nacum.cpp | |
-> Compiling vecevent.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1404/1731] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc | |
[1405/1731] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc | |
[1406/1731] Generating ../../testcorenrn_bbcore/neuron/common.hoc | |
[1407/1731] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc | |
[1408/1731] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc | |
[1409/1731] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc | |
[1410/1731] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1411/1731] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc | |
[1412/1731] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1413/1731] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc | |
[1414/1731] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc | |
[1415/1731] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc | |
[1416/1731] Generating ../../testcorenrn_conc/neuron/common.hoc | |
[1417/1731] Generating ../../testcorenrn_conc/neuron/defvar.hoc | |
[1418/1731] Generating ../../testcorenrn_conc/neuron/testconc.hoc | |
[1419/1731] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc | |
[1420/1731] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc | |
[1421/1731] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc | |
[1422/1731] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1423/1731] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc | |
[1424/1731] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1425/1731] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc | |
[1426/1731] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc | |
[1427/1731] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc | |
[1428/1731] Generating ../../testcorenrn_deriv/neuron/common.hoc | |
[1429/1731] Generating ../../testcorenrn_deriv/neuron/defvar.hoc | |
[1430/1731] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc | |
[1431/1731] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc | |
[1432/1731] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc | |
[1433/1731] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc | |
[1434/1731] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1435/1731] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1436/1731] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc | |
[1437/1731] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc | |
[1438/1731] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc | |
[1439/1731] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc | |
[1440/1731] Generating ../../testcorenrn_gf/neuron/common.hoc | |
[1441/1731] Generating ../../testcorenrn_gf/neuron/defvar.hoc | |
[1442/1731] Generating ../../testcorenrn_gf/neuron/testgf.hoc | |
[1443/1731] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc | |
[1444/1731] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1445/1731] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc | |
[1446/1731] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc | |
[1447/1731] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1448/1731] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc | |
[1449/1731] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc | |
[1450/1731] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc | |
[1451/1731] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc | |
[1452/1731] Generating ../../testcorenrn_kin/neuron/testkin.hoc | |
[1453/1731] Generating ../../testcorenrn_kin/neuron/common.hoc | |
[1454/1731] Generating ../../testcorenrn_kin/neuron/defvar.hoc | |
[1455/1731] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc | |
[1456/1731] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc | |
[1457/1731] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc | |
[1458/1731] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc | |
[1459/1731] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1460/1731] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc | |
[1461/1731] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1462/1731] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc | |
[1463/1731] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc | |
[1464/1731] Generating ../../testcorenrn_patstim/neuron/common.hoc | |
[1465/1731] Generating ../../testcorenrn_patstim/neuron/defvar.hoc | |
[1466/1731] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc | |
[1467/1731] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc | |
[1468/1731] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc | |
[1469/1731] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc | |
[1470/1731] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc | |
[1471/1731] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc | |
[1472/1731] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc | |
[1473/1731] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc | |
[1474/1731] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc | |
[1475/1731] Generating ../../testcorenrn_vecplay/neuron/common.hoc | |
[1476/1731] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc | |
[1477/1731] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc | |
[1478/1731] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc | |
[1479/1731] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1480/1731] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1481/1731] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc | |
[1482/1731] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc | |
[1483/1731] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc | |
[1484/1731] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc | |
[1485/1731] Generating ../../testcorenrn_vecevent/neuron/common.hoc | |
[1486/1731] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc | |
[1487/1731] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc | |
[1488/1731] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc | |
[1489/1731] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc | |
[1490/1731] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc | |
[1491/1731] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1492/1731] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc | |
[1493/1731] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1494/1731] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc | |
[1495/1731] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc | |
[1496/1731] Generating ../../testcorenrn_watch/neuron/common.hoc | |
[1497/1731] Generating ../../testcorenrn_watch/neuron/testwatch.hoc | |
[1498/1731] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc | |
[1499/1731] Generating ../../testcorenrn_watch/neuron/defvar.hoc | |
[1500/1731] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc | |
[1501/1731] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc | |
[1502/1731] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc | |
[1503/1731] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1504/1731] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1505/1731] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc | |
[1506/1731] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc | |
[1507/1731] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc | |
[1508/1731] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc | |
[1509/1731] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc | |
[1510/1731] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc | |
[1511/1731] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc | |
[1512/1731] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc | |
[1513/1731] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc | |
[1514/1731] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc | |
[1515/1731] Building special[-core] for test group coreneuron_modtests | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30 | |
cfiles = | |
Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod" | |
MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./invlfire.o ./natrans.o ./netmove.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o | |
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
Default NMODL flags: | |
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bacur.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial_pp.mod | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/banocur.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/fornetcon.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/natrans.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfire.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netmove.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/sample.mod | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/watchrange.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> Binary creating arm64/special-core | |
[INFO] MOD files built successfully for CoreNEURON | |
-> Compiling mod_func.cpp | |
-> NMODL .././axial.mod | |
-> NMODL .././axial_pp.mod | |
-> NMODL .././bacur.mod | |
Translating axial_pp.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/axial_pp.cpp | |
INCLUDEing axial.inc | |
Translating bacur.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/bacur.cpp | |
Translating axial.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/axial.cpp | |
INCLUDEing axial.inc | |
Thread Safe | |
Thread Safe | |
-> NMODL .././banocur.mod | |
Thread Safe | |
-> NMODL .././fornetcon.mod | |
-> NMODL .././invlfire.mod | |
Translating banocur.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/banocur.cpp | |
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/fornetcon.cpp | |
Thread Safe | |
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/invlfire.cpp | |
Thread Safe | |
Notice: This mechanism cannot be used with CVODE | |
Thread Safe | |
-> NMODL .././natrans.mod | |
-> NMODL .././netmove.mod | |
-> NMODL .././sample.mod | |
Translating netmove.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/netmove.cpp | |
Translating natrans.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/natrans.cpp | |
Thread Safe | |
Thread Safe | |
-> NMODL .././unitstest.mod | |
Translating sample.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/sample.cpp | |
-> NMODL .././version_macros.mod | |
Thread Safe | |
-> NMODL .././watchrange.mod | |
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/unitstest.cpp | |
Thread Safe | |
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/version_macros.cpp | |
Thread Safe | |
-> Compiling axial.cpp | |
-> Compiling axial_pp.cpp | |
Translating watchrange.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/watchrange.cpp | |
Thread Safe | |
-> Compiling bacur.cpp | |
-> Compiling banocur.cpp | |
-> Compiling fornetcon.cpp | |
-> Compiling invlfire.cpp | |
-> Compiling natrans.cpp | |
-> Compiling netmove.cpp | |
-> Compiling sample.cpp | |
-> Compiling unitstest.cpp | |
-> Compiling version_macros.cpp | |
-> Compiling watchrange.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1516/1731] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py | |
[1517/1731] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py | |
[1518/1731] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc | |
[1519/1731] Generating coreneuron_modtests/version_macros/test/pytest_coreneuron/test_version_macros.py | |
[1520/1731] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py | |
[1521/1731] Generating coreneuron_modtests/inputpresyn_py/test/coreneuron/test_inputpresyn.py | |
[1522/1731] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py | |
[1523/1731] Generating coreneuron_modtests/fast_imem_py_cpu/test/pytest_coreneuron/test_fast_imem.py | |
[1524/1731] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py | |
[1525/1731] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py | |
[1526/1731] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py | |
[1527/1731] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py | |
[1528/1731] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py | |
[1529/1731] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py | |
[1530/1731] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py | |
[1531/1731] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py | |
[1532/1731] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py | |
[1533/1731] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py | |
[1534/1731] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/common/catch2_main.cpp.o | |
[1535/1731] Linking CXX executable bin/test/nrn-benchmarks | |
[1536/1731] Building special[-core] for test group example_nmodl | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2 | |
cfiles = | |
Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod" | |
MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o | |
-> Compiling mod_func.cpp | |
-> NMODL .././cabpump.mod | |
-> NMODL .././argpass.mod | |
-> NMODL .././cachan.mod | |
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp | |
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
Translating argpass.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp | |
Notice: VERBATIM blocks are not thread safe | |
Translating cachan.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp | |
Thread Safe | |
-> NMODL .././cacum.mod | |
-> NMODL .././cacur.mod | |
-> NMODL .././cadif.mod | |
Translating cacur.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp | |
Thread Safe | |
Translating cacum.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp | |
Thread Safe | |
-> NMODL .././cadifusl.mod | |
Translating cadif.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp | |
Thread Safe | |
-> NMODL .././cagk.mod | |
-> NMODL .././cagkftab.mod | |
Translating cadifusl.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp | |
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
Translating cagk.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp | |
Thread Safe | |
-> NMODL .././capmp.mod | |
Translating cagkftab.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp | |
Thread Safe | |
-> NMODL .././expsynspine.mod | |
-> NMODL .././fh.mod | |
Translating expsynspine.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp | |
Notice: LINEAR is not thread safe. | |
Translating capmp.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp | |
NEURON's CVode method ignores conservation | |
Thread Safe | |
-> NMODL .././fit1.mod | |
-> NMODL .././gap.mod | |
Translating fh.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp | |
INCLUDEing standard.inc | |
Notice: Assignment to the GLOBAL variable, "inf", is not thread safe | |
Notice: Assignment to the GLOBAL variable, "tau", is not thread safe | |
-> NMODL .././hh1.mod | |
Translating fit1.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp | |
Notice: VERBATIM blocks are not thread safe | |
Translating gap.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp | |
Notice: Use of POINTER is not thread safe. | |
-> NMODL .././hhvect.mod | |
-> NMODL .././inatest.mod | |
Translating hh1.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp | |
Notice: This mechanism cannot be used with CVODE | |
Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe | |
Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe | |
Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe | |
Notice: Assignment to the GLOBAL variable, "minf", is not thread safe | |
Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe | |
Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe | |
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON. | |
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON. | |
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON. | |
-> NMODL .././ionleak.mod | |
Translating hhvect.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp | |
Notice: This mechanism cannot be used with CVODE | |
Thread Safe | |
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON. | |
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON. | |
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON. | |
Translating ionleak.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp | |
Thread Safe | |
-> NMODL .././nacum.mod | |
-> NMODL .././nacur.mod | |
Translating inatest.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp | |
Thread Safe | |
-> NMODL .././nadifl.mod | |
Translating nacum.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp | |
Thread Safe | |
-> NMODL .././nonlin.mod | |
Translating nacur.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp | |
Thread Safe | |
-> NMODL .././obj_ex.mod | |
Translating nadifl.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp | |
Thread Safe | |
-> NMODL .././order.mod | |
Translating nonlin.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp | |
Notice: NONLINEAR is not thread safe. | |
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
only affects and is affected by discrete events. As such it is not | |
located in a section and is not associated with an integrator | |
-> NMODL .././passiv.mod | |
Translating obj_ex.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp | |
Thread Safe | |
-> NMODL .././rchan.mod | |
Translating passiv.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp | |
Thread Safe | |
Translating rchan.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp | |
Notice: normrand is not thread safe | |
Notice: This mechanism cannot be used with CVODE | |
-> NMODL .././stim1.mod | |
Translating order.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp | |
Thread Safe | |
-> NMODL .././str.mod | |
-> NMODL .././syn1.mod | |
Translating stim1.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp | |
Thread Safe | |
-> NMODL .././synpre.mod | |
Translating syn1.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp | |
Thread Safe | |
Translating str.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp | |
Notice: VERBATIM blocks are not thread safe | |
-> NMODL .././trivial.mod | |
-> NMODL .././tstdarray.mod | |
Translating synpre.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp | |
Notice: Use of POINTER is not thread safe. | |
Notice: VERBATIM blocks are not thread safe | |
Notice: This mechanism cannot be used with CVODE | |
-> NMODL .././tstextrn.mod | |
Translating trivial.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp | |
-> NMODL .././tstpnt1.mod | |
Translating tstdarray.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp | |
Thread Safe | |
-> NMODL .././tstpnt2.mod | |
-> NMODL .././tstvec.mod | |
Translating tstextrn.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp | |
Notice: Use of EXTERNAL is not thread safe. | |
-> NMODL .././vclmp1.mod | |
Translating tstpnt1.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp | |
Translating tstpnt2.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp | |
Notice: Use of POINTER is not thread safe. | |
Notice: Use of POINTER is not thread safe. | |
-> NMODL .././vlag.mod | |
-> Compiling argpass.cpp | |
Translating tstvec.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp | |
Notice: VERBATIM blocks are not thread safe | |
-> Compiling cabpump.cpp | |
Translating vclmp1.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp | |
Notice: VERBATIM blocks are not thread safe | |
Notice: This mechanism cannot be used with CVODE | |
Notice: LINEAR is not thread safe. | |
Translating vlag.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp | |
Thread Safe | |
-> Compiling cachan.cpp | |
-> Compiling cacum.cpp | |
-> Compiling cacur.cpp | |
-> Compiling cadif.cpp | |
-> Compiling cadifusl.cpp | |
-> Compiling cagk.cpp | |
-> Compiling cagkftab.cpp | |
-> Compiling capmp.cpp | |
-> Compiling expsynspine.cpp | |
-> Compiling fh.cpp | |
-> Compiling fit1.cpp | |
-> Compiling gap.cpp | |
-> Compiling hh1.cpp | |
-> Compiling hhvect.cpp | |
-> Compiling inatest.cpp | |
-> Compiling ionleak.cpp | |
-> Compiling nacum.cpp | |
-> Compiling nacur.cpp | |
-> Compiling nadifl.cpp | |
-> Compiling nonlin.cpp | |
-> Compiling obj_ex.cpp | |
-> Compiling order.cpp | |
-> Compiling passiv.cpp | |
-> Compiling rchan.cpp | |
-> Compiling stim1.cpp | |
-> Compiling str.cpp | |
-> Compiling syn1.cpp | |
-> Compiling synpre.cpp | |
-> Compiling trivial.cpp | |
-> Compiling tstdarray.cpp | |
-> Compiling tstextrn.cpp | |
-> Compiling tstpnt1.cpp | |
-> Compiling tstpnt2.cpp | |
-> Compiling tstvec.cpp | |
-> Compiling vclmp1.cpp | |
-> Compiling vlag.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1537/1731] Generating example_nmodl/cabpump_hoc/cabpump.hoc | |
[1538/1731] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc | |
[1539/1731] Generating example_nmodl/cachan_hoc/cachan.hoc | |
[1540/1731] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc | |
[1541/1731] Generating example_nmodl/cadif_hoc/cadif.hoc | |
[1542/1731] Generating example_nmodl/cadif_hoc/cadif.ses | |
[1543/1731] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc | |
[1544/1731] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc | |
[1545/1731] Generating example_nmodl/cagk_hoc/cagk.hoc | |
[1546/1731] Generating example_nmodl/cv_hoc/cv.hoc | |
[1547/1731] Generating example_nmodl/capmp_hoc/capmp.hoc | |
[1548/1731] Generating example_nmodl/fit1_hoc/fit1.hoc | |
[1549/1731] Generating example_nmodl/gap_hoc/gap.hoc | |
[1550/1731] Generating example_nmodl/fh_hoc/fh.hoc | |
[1551/1731] Generating example_nmodl/hh1_hoc/hh1.hoc | |
[1552/1731] Generating example_nmodl/nacum_hoc/nacum.hoc | |
[1553/1731] Generating example_nmodl/hhvect_hoc/hhvect.hoc | |
[1554/1731] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc | |
[1555/1731] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc | |
[1556/1731] Generating example_nmodl/nadifl1_hoc/nadifl1.ses | |
[1557/1731] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc | |
[1558/1731] Generating example_nmodl/nadifl2_hoc/nadifl2.ses | |
[1559/1731] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc | |
[1560/1731] Generating example_nmodl/nadifl3_hoc/nadifl3.ses | |
[1561/1731] Generating example_nmodl/nadifl4_hoc/nadifl4.ses | |
[1562/1731] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc | |
[1563/1731] Generating example_nmodl/order_hoc/order.hoc | |
[1564/1731] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc | |
[1565/1731] Generating example_nmodl/passiv_hoc/passiv.hoc | |
[1566/1731] Generating example_nmodl/syn1_hoc/syn1.hoc | |
[1567/1731] Generating example_nmodl/synpre_hoc/synpre.hoc | |
[1568/1731] Generating example_nmodl/stim1_hoc/stim1.hoc | |
[1569/1731] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc | |
[1570/1731] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc | |
[1571/1731] Generating example_nmodl/tstvec_hoc/tstvec.hoc | |
[1572/1731] Generating example_nmodl/expsynspine_py/expsynspine.py | |
[1573/1731] Generating example_nmodl/cagkftab_py/cagkftab.py | |
[1574/1731] Generating example_nmodl/tstpnt1_py/tstpnt1.py | |
[1575/1731] Generating example_nmodl/tstpnt2_py/tstpnt2.py | |
[1576/1731] Generating example_nmodl/expsynspine_py/expsynspine.ses | |
[1577/1731] Generating example_nmodl/nonlin_py/nonlin.py | |
[1578/1731] Generating example_nmodl/vlag_py/vlag.py | |
[1579/1731] Building special[-core] for test group reduced_dentate | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead | |
cfiles = | |
Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod" | |
MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o | |
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
Default NMODL flags: | |
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_CadepK.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Ca.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KA.mod | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRf.mod | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRs.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Na.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/CaBK.mod | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_M.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_UK.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_sAHP.mod | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/LcaMig.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_KIn.mod | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_na8st.mod | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse | |
[NMODL] [info] :: Running sympy solve visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bgka.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ccanl.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ggap.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gskch.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/holdingi.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hyperde3.mod | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ichan2.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/iconc_Ca.mod | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/kcaPR.mod | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/na3n.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nca.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/spines.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/tca.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C++ backend code generator | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> Binary creating arm64/special-core | |
[INFO] MOD files built successfully for CoreNEURON | |
-> Compiling mod_func.cpp | |
-> NMODL .././Aradi_Ca.mod | |
-> NMODL .././Aradi_CadepK.mod | |
-> NMODL .././Aradi_KA.mod | |
Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp | |
Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp | |
Thread Safe | |
Translating Aradi_KA.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp | |
Thread Safe | |
Thread Safe | |
-> NMODL .././Aradi_KDRf.mod | |
-> NMODL .././Aradi_KDRs.mod | |
-> NMODL .././Aradi_Na.mod | |
Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp | |
Thread Safe | |
Translating Aradi_Na.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp | |
Thread Safe | |
Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp | |
-> NMODL .././CaBK.mod | |
Thread Safe | |
-> NMODL .././DGC_M.mod | |
-> NMODL .././DGC_UK.mod | |
Translating CaBK.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp | |
Thread Safe | |
Translating DGC_M.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp | |
Thread Safe | |
-> NMODL .././DGC_sAHP.mod | |
Translating DGC_UK.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp | |
Thread Safe | |
-> NMODL .././Gfluct3.mod | |
-> NMODL .././LcaMig.mod | |
Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp | |
Thread Safe | |
Translating LcaMig.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp | |
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp | |
Thread Safe | |
Thread Safe | |
-> NMODL .././SH_KIn.mod | |
-> NMODL .././SH_na8st.mod | |
-> NMODL .././bgka.mod | |
-> NMODL .././ccanl.mod | |
Translating SH_KIn.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp | |
Translating SH_na8st.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp | |
Thread Safe | |
NEURON's CVode method ignores conservation | |
Translating bgka.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp | |
Thread Safe | |
Thread Safe | |
-> NMODL .././ggap.mod | |
-> NMODL .././gskch.mod | |
-> NMODL .././holdingi.mod | |
Translating ccanl.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp | |
Thread Safe | |
-> NMODL .././hyperde3.mod | |
Translating gskch.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp | |
Translating ggap.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp | |
Thread Safe | |
Thread Safe | |
Translating holdingi.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp | |
Thread Safe | |
-> NMODL .././ichan2.mod | |
-> NMODL .././iconc_Ca.mod | |
Translating hyperde3.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp | |
-> NMODL .././kcaPR.mod | |
Thread Safe | |
-> NMODL .././na3n.mod | |
Translating iconc_Ca.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp | |
Thread Safe | |
Translating ichan2.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp | |
Thread Safe | |
-> NMODL .././nca.mod | |
Translating kcaPR.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp | |
Thread Safe | |
-> NMODL .././spines.mod | |
-> NMODL .././tca.mod | |
Translating na3n.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp | |
Thread Safe | |
-> NMODL .././vecevent.mod | |
Translating nca.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp | |
Thread Safe | |
Translating spines.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp | |
Thread Safe | |
-> Compiling Aradi_Ca.cpp | |
-> Compiling Aradi_CadepK.cpp | |
Translating tca.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp | |
Thread Safe | |
-> Compiling Aradi_KA.cpp | |
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp | |
Thread Safe | |
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
only affects and is affected by discrete events. As such it is not | |
located in a section and is not associated with an integrator | |
-> Compiling Aradi_KDRf.cpp | |
-> Compiling Aradi_KDRs.cpp | |
-> Compiling Aradi_Na.cpp | |
-> Compiling CaBK.cpp | |
-> Compiling DGC_M.cpp | |
-> Compiling DGC_UK.cpp | |
-> Compiling DGC_sAHP.cpp | |
-> Compiling Gfluct3.cpp | |
-> Compiling LcaMig.cpp | |
-> Compiling SH_KIn.cpp | |
-> Compiling SH_na8st.cpp | |
-> Compiling bgka.cpp | |
-> Compiling ccanl.cpp | |
-> Compiling ggap.cpp | |
-> Compiling gskch.cpp | |
-> Compiling holdingi.cpp | |
-> Compiling hyperde3.cpp | |
-> Compiling ichan2.cpp | |
-> Compiling iconc_Ca.cpp | |
-> Compiling kcaPR.cpp | |
-> Compiling na3n.cpp | |
-> Compiling nca.cpp | |
-> Compiling spines.cpp | |
-> Compiling tca.cpp | |
-> Compiling vecevent.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
Successfully created arm64/special | |
[1580/1731] Generating ../../reduced_dentate/neuron/commonutils.py | |
[1581/1731] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat | |
[1582/1731] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat | |
[1583/1731] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat | |
[1584/1731] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat | |
[1585/1731] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat | |
[1586/1731] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat | |
[1587/1731] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat | |
[1588/1731] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat | |
[1589/1731] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat | |
[1590/1731] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat | |
[1591/1731] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat | |
[1592/1731] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat | |
[1593/1731] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat | |
[1594/1731] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat | |
[1595/1731] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat | |
[1596/1731] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat | |
[1597/1731] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat | |
[1598/1731] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat | |
[1599/1731] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat | |
[1600/1731] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat | |
[1601/1731] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat | |
[1602/1731] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat | |
[1603/1731] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat | |
[1604/1731] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat | |
[1605/1731] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat | |
[1606/1731] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat | |
[1607/1731] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat | |
[1608/1731] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat | |
[1609/1731] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat | |
[1610/1731] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat | |
[1611/1731] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat | |
[1612/1731] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat | |
[1613/1731] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat | |
[1614/1731] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat | |
[1615/1731] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat | |
[1616/1731] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat | |
[1617/1731] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat | |
[1618/1731] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat | |
[1619/1731] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat | |
[1620/1731] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat | |
[1621/1731] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat | |
[1622/1731] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat | |
[1623/1731] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat | |
[1624/1731] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat | |
[1625/1731] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat | |
[1626/1731] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat | |
[1627/1731] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat | |
[1628/1731] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat | |
[1629/1731] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat | |
[1630/1731] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat | |
[1631/1731] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat | |
[1632/1731] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat | |
[1633/1731] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat | |
[1634/1731] Generating ../../reduced_dentate/neuron/lib.hoc | |
[1635/1731] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat | |
[1636/1731] Generating ../../reduced_dentate/neuron/main.hoc | |
[1637/1731] Generating ../../reduced_dentate/neuron/run.hoc | |
[1638/1731] Generating ../../reduced_dentate/neuron/parameters/Control.hoc | |
[1639/1731] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc | |
[1640/1731] Generating ../../reduced_dentate/neuron/templates/DGC.hoc | |
[1641/1731] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc | |
[1642/1731] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc | |
[1643/1731] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc | |
[1644/1731] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc | |
[1645/1731] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc | |
[1646/1731] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc | |
[1647/1731] Generating ../../reduced_dentate/neuron/templates/Dict.hoc | |
[1648/1731] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc | |
[1649/1731] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc | |
[1650/1731] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc | |
[1651/1731] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc | |
[1652/1731] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc | |
[1653/1731] Generating ../../reduced_dentate/neuron/templates/Value.hoc | |
[1654/1731] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc | |
[1655/1731] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py | |
[1656/1731] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat | |
[1657/1731] Generating ../../reduced_dentate/neuron/templates/defvar.hoc | |
[1658/1731] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat | |
[1659/1731] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat | |
[1660/1731] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat | |
[1661/1731] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat | |
[1662/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat | |
[1663/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat | |
[1664/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat | |
[1665/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat | |
[1666/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat | |
[1667/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat | |
[1668/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat | |
[1669/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat | |
[1670/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat | |
[1671/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat | |
[1672/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat | |
[1673/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat | |
[1674/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat | |
[1675/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat | |
[1676/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat | |
[1677/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat | |
[1678/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat | |
[1679/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat | |
[1680/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat | |
[1681/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat | |
[1682/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat | |
[1683/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat | |
[1684/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat | |
[1685/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat | |
[1686/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat | |
[1687/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat | |
[1688/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat | |
[1689/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat | |
[1690/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat | |
[1691/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat | |
[1692/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat | |
[1693/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat | |
[1694/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat | |
[1695/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat | |
[1696/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat | |
[1697/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat | |
[1698/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat | |
[1699/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat | |
[1700/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat | |
[1701/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat | |
[1702/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat | |
[1703/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat | |
[1704/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat | |
[1705/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat | |
[1706/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat | |
[1707/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat | |
[1708/1731] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc | |
[1709/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat | |
[1710/1731] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc | |
[1711/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat | |
[1712/1731] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat | |
[1713/1731] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc | |
[1714/1731] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc | |
[1715/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc | |
[1716/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc | |
[1717/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc | |
[1718/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc | |
[1719/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc | |
[1720/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc | |
[1721/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc | |
[1722/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc | |
[1723/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc | |
[1724/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc | |
[1725/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc | |
[1726/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc | |
[1727/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc | |
[1728/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc | |
[1729/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc | |
[1730/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc | |
[1731/1731] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc | |
[32;1m$ ccache -vs 2>/dev/null[0;m | |
Cache directory: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/ccache | |
Config file: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/ccache/ccache.conf | |
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf | |
Stats updated: Fri Jan 26 15:47:53 2024 | |
Cacheable calls: 507 / 507 (100.0%) | |
Hits: 0 / 507 ( 0.00%) | |
Direct: 0 | |
Preprocessed: 0 | |
Misses: 507 / 507 (100.0%) | |
Successful lookups: | |
Direct: 0 / 507 ( 0.00%) | |
Preprocessed: 0 / 507 ( 0.00%) | |
Local storage: | |
Cache size (GiB): 0.7 / 5.0 (13.13%) | |
Files: 4727 | |
Hits: 0 / 507 ( 0.00%) | |
Misses: 507 / 507 (100.0%) | |
Reads: 1014 | |
Writes: 947 | |
[32;1m$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg[0;m | |
[32;1m$ cat src/nrnpython/setup.cfg[0;m | |
[install] | |
prefix= | |
[32;1m$ ctest --output-on-failure[0;m | |
Test project /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build | |
Start 219: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
Start 227: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
1/280 Test #227: testcorenrn_bbcore::coreneuron_cpu_offline::preparation .................. Passed 1.15 sec | |
Start 233: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
2/280 Test #233: testcorenrn_conc::coreneuron_cpu_offline::preparation .................... Passed 0.21 sec | |
Start 239: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
3/280 Test #239: testcorenrn_deriv::coreneuron_cpu_offline::preparation ................... Passed 0.21 sec | |
Start 251: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
4/280 Test #251: testcorenrn_kin::coreneuron_cpu_offline::preparation ..................... Passed 0.22 sec | |
Start 138: pyinit::nrniv_py3.10_python_check_sys_path::preparation | |
5/280 Test #138: pyinit::nrniv_py3.10_python_check_sys_path::preparation .................. Passed 0.02 sec | |
Start 140: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation | |
6/280 Test #140: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ............... Passed 0.02 sec | |
Start 142: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation | |
7/280 Test #142: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................ Passed 0.02 sec | |
Start 144: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation | |
8/280 Test #144: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation ............. Passed 0.02 sec | |
Start 146: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation | |
9/280 Test #146: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ........... Passed 0.02 sec | |
Start 148: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation | |
10/280 Test #148: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........ Passed 0.02 sec | |
Start 150: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation | |
11/280 Test #150: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ........... Passed 0.02 sec | |
Start 152: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation | |
12/280 Test #152: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........ Passed 0.02 sec | |
Start 154: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation | |
13/280 Test #154: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ...... Passed 0.02 sec | |
Start 156: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation | |
14/280 Test #156: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ... Passed 0.02 sec | |
Start 158: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation | |
15/280 Test #219: external_ringtest::coreneuron_cpu_mpi_offline::preparation ............... Passed 2.02 sec | |
Start 245: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
16/280 Test #158: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation ....... Passed 0.02 sec | |
Start 160: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation | |
17/280 Test #160: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation .... Passed 0.02 sec | |
Start 162: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation | |
18/280 Test #162: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........ Passed 0.02 sec | |
Start 164: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation | |
19/280 Test #164: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation ..... Passed 0.02 sec | |
Start 166: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation | |
20/280 Test #166: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation ....... Passed 0.02 sec | |
Start 168: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation | |
21/280 Test #168: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation .... Passed 0.02 sec | |
Start 174: pyinit::nrniv_pydef_python_check_sys_path::preparation | |
22/280 Test #174: pyinit::nrniv_pydef_python_check_sys_path::preparation ................... Passed 0.02 sec | |
Start 176: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation | |
23/280 Test #176: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................ Passed 0.02 sec | |
Start 178: pyinit::nrniv_pydef_python_check_sys_prefix::preparation | |
24/280 Test #178: pyinit::nrniv_pydef_python_check_sys_prefix::preparation ................. Passed 0.02 sec | |
Start 180: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation | |
25/280 Test #180: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation .............. Passed 0.02 sec | |
Start 182: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation | |
26/280 Test #182: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............ Passed 0.02 sec | |
Start 184: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation | |
27/280 Test #184: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation ......... Passed 0.02 sec | |
Start 186: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation | |
28/280 Test #245: testcorenrn_gf::coreneuron_cpu_offline::preparation ...................... Passed 0.23 sec | |
Start 256: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
29/280 Test #186: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............ Passed 0.02 sec | |
Start 188: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation | |
30/280 Test #188: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation ......... Passed 0.02 sec | |
Start 190: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation | |
31/280 Test #190: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation ....... Passed 0.02 sec | |
Start 192: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation | |
32/280 Test #192: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation .... Passed 0.02 sec | |
Start 194: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation | |
33/280 Test #194: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........ Passed 0.02 sec | |
Start 196: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation | |
34/280 Test #196: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation ..... Passed 0.02 sec | |
Start 198: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation | |
35/280 Test #198: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation ......... Passed 0.02 sec | |
Start 200: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation | |
36/280 Test #200: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ...... Passed 0.02 sec | |
Start 202: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation | |
37/280 Test #202: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........ Passed 0.02 sec | |
Start 204: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation | |
38/280 Test #204: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation ..... Passed 0.02 sec | |
Start 212: external_ringtest::neuron | |
39/280 Test #256: testcorenrn_patstim::coreneuron_cpu_offline::preparation ................. Passed 0.27 sec | |
Start 262: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
40/280 Test #262: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ................. Passed 0.23 sec | |
Start 274: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
41/280 Test #274: testcorenrn_watch::coreneuron_cpu_offline::preparation ................... Passed 0.23 sec | |
Start 213: external_ringtest::neuron_mpi | |
42/280 Test #213: external_ringtest::neuron_mpi ............................................ Passed 2.33 sec | |
Start 214: external_ringtest::neuron_mpi_python | |
43/280 Test #212: external_ringtest::neuron ................................................ Passed 4.26 sec | |
Start 223: testcorenrn_bbcore::neuron | |
44/280 Test #223: testcorenrn_bbcore::neuron ............................................... Passed 0.23 sec | |
Start 224: testcorenrn_bbcore::coreneuron_cpu_online | |
45/280 Test #224: testcorenrn_bbcore::coreneuron_cpu_online ................................ Passed 0.48 sec | |
Start 225: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
46/280 Test #225: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ............... Passed 0.56 sec | |
Start 226: testcorenrn_bbcore::coreneuron_cpu_offline | |
47/280 Test #214: external_ringtest::neuron_mpi_python ..................................... Passed 2.72 sec | |
Start 215: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
48/280 Test #226: testcorenrn_bbcore::coreneuron_cpu_offline ............................... Passed 0.31 sec | |
Start 229: testcorenrn_conc::neuron | |
49/280 Test #229: testcorenrn_conc::neuron ................................................. Passed 0.27 sec | |
Start 230: testcorenrn_conc::coreneuron_cpu_online | |
50/280 Test #230: testcorenrn_conc::coreneuron_cpu_online .................................. Passed 0.50 sec | |
Start 231: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
51/280 Test #215: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................ Passed 1.56 sec | |
Start 216: external_ringtest::coreneuron_cpu_mpi | |
52/280 Test #231: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ................. Passed 0.55 sec | |
Start 232: testcorenrn_conc::coreneuron_cpu_offline | |
53/280 Test #232: testcorenrn_conc::coreneuron_cpu_offline ................................. Passed 0.18 sec | |
Start 235: testcorenrn_deriv::neuron | |
54/280 Test #235: testcorenrn_deriv::neuron ................................................ Passed 0.26 sec | |
Start 236: testcorenrn_deriv::coreneuron_cpu_online | |
55/280 Test #216: external_ringtest::coreneuron_cpu_mpi .................................... Passed 0.92 sec | |
Start 217: external_ringtest::coreneuron_cpu_mpi_python | |
56/280 Test #236: testcorenrn_deriv::coreneuron_cpu_online ................................. Passed 0.50 sec | |
Start 237: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
57/280 Test #237: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................ Passed 0.83 sec | |
Start 238: testcorenrn_deriv::coreneuron_cpu_offline | |
58/280 Test #238: testcorenrn_deriv::coreneuron_cpu_offline ................................ Passed 0.17 sec | |
Start 247: testcorenrn_kin::neuron | |
59/280 Test #217: external_ringtest::coreneuron_cpu_mpi_python ............................. Passed 1.24 sec | |
Start 218: external_ringtest::coreneuron_cpu_mpi_offline | |
60/280 Test #247: testcorenrn_kin::neuron .................................................. Passed 0.23 sec | |
Start 248: testcorenrn_kin::coreneuron_cpu_online | |
61/280 Test #218: external_ringtest::coreneuron_cpu_mpi_offline ............................ Passed 0.46 sec | |
Start 241: testcorenrn_gf::neuron | |
62/280 Test #248: testcorenrn_kin::coreneuron_cpu_online ................................... Passed 0.49 sec | |
Start 249: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
63/280 Test #249: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate .................. Passed 0.54 sec | |
Start 250: testcorenrn_kin::coreneuron_cpu_offline | |
64/280 Test #250: testcorenrn_kin::coreneuron_cpu_offline .................................. Passed 0.18 sec | |
Start 1: cmd_interface_test | |
65/280 Test #1: cmd_interface_test ....................................................... Passed 0.43 sec | |
Start 2: interleave_info_constructor_test | |
66/280 Test #2: interleave_info_constructor_test ......................................... Passed 0.22 sec | |
Start 3: alignment_test | |
67/280 Test #3: alignment_test ........................................................... Passed 0.22 sec | |
Start 4: queuing_test | |
68/280 Test #4: queuing_test ............................................................. Passed 0.22 sec | |
Start 5: test-solver | |
69/280 Test #241: testcorenrn_gf::neuron ................................................... Passed 1.98 sec | |
Start 242: testcorenrn_gf::coreneuron_cpu_online | |
70/280 Test #5: test-solver .............................................................. Passed 0.33 sec | |
Start 6: lfp_test | |
71/280 Test #6: lfp_test ................................................................. Passed 0.29 sec | |
Start 7: unit_tests::testneuron | |
72/280 Test #242: testcorenrn_gf::coreneuron_cpu_online .................................... Passed 0.65 sec | |
Start 243: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
73/280 Test #7: unit_tests::testneuron ................................................... Passed 0.28 sec | |
Start 8: unit_tests::testneuron_soa_erase_calls_terminate | |
74/280 Test #8: unit_tests::testneuron_soa_erase_calls_terminate ......................... Passed 0.11 sec | |
Start 9: ringtest | |
75/280 Test #9: ringtest ................................................................. Passed 0.51 sec | |
Start 10: connect_dend | |
76/280 Test #10: connect_dend ............................................................. Passed 0.17 sec | |
Start 11: mpi_init::nrniv_mpiopt | |
77/280 Test #11: mpi_init::nrniv_mpiopt ................................................... Passed 0.18 sec | |
Start 12: mpi_init::nrniv_nrnmpi_init | |
78/280 Test #12: mpi_init::nrniv_nrnmpi_init .............................................. Passed 0.18 sec | |
Start 13: mpi_init::python_nrnmpi_init | |
79/280 Test #13: mpi_init::python_nrnmpi_init ............................................. Passed 0.58 sec | |
Start 14: mpi_init::python_mpienv | |
80/280 Test #243: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ................... Passed 1.98 sec | |
Start 244: testcorenrn_gf::coreneuron_cpu_offline | |
81/280 Test #244: testcorenrn_gf::coreneuron_cpu_offline ................................... Passed 0.47 sec | |
Start 253: testcorenrn_patstim::neuron | |
82/280 Test #14: mpi_init::python_mpienv .................................................. Passed 0.58 sec | |
Start 15: mpi_init::nrniv_mpiexec_mpiopt | |
83/280 Test #15: mpi_init::nrniv_mpiexec_mpiopt ........................................... Passed 0.18 sec | |
Start 16: mpi_init::nrniv_mpiexec_nrnmpi_init | |
84/280 Test #253: testcorenrn_patstim::neuron .............................................. Passed 0.34 sec | |
Start 254: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
85/280 Test #16: mpi_init::nrniv_mpiexec_nrnmpi_init ...................................... Passed 0.18 sec | |
Start 17: mpi_init::python_mpiexec_nrnmpi_init | |
86/280 Test #17: mpi_init::python_mpiexec_nrnmpi_init ..................................... Passed 0.62 sec | |
Start 18: mpi_init::python_mpiexec_mpienv | |
87/280 Test #254: testcorenrn_patstim::coreneuron_cpu_offline_saverestore .................. Passed 0.79 sec | |
Start 255: testcorenrn_patstim::coreneuron_cpu_offline | |
88/280 Test #255: testcorenrn_patstim::coreneuron_cpu_offline .............................. Passed 0.29 sec | |
Start 258: testcorenrn_vecplay::neuron | |
89/280 Test #18: mpi_init::python_mpiexec_mpienv .......................................... Passed 0.65 sec | |
Start 19: unit_tests::python_unit_tests | |
90/280 Test #258: testcorenrn_vecplay::neuron .............................................. Passed 0.32 sec | |
Start 259: testcorenrn_vecplay::coreneuron_cpu_online | |
91/280 Test #259: testcorenrn_vecplay::coreneuron_cpu_online ............................... Passed 0.68 sec | |
Start 260: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
92/280 Test #19: unit_tests::python_unit_tests ............................................ Passed 0.78 sec | |
Start 20: pytest::basic_tests_py3.10 | |
93/280 Test #260: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate .............. Passed 0.81 sec | |
Start 261: testcorenrn_vecplay::coreneuron_cpu_offline | |
94/280 Test #20: pytest::basic_tests_py3.10 ............................................... Passed 0.82 sec | |
Start 21: pytest_coreneuron::basic_tests_py3.10 | |
95/280 Test #261: testcorenrn_vecplay::coreneuron_cpu_offline .............................. Passed 0.19 sec | |
Start 270: testcorenrn_watch::neuron | |
96/280 Test #270: testcorenrn_watch::neuron ................................................ Passed 0.51 sec | |
Start 271: testcorenrn_watch::coreneuron_cpu_online | |
97/280 Test #271: testcorenrn_watch::coreneuron_cpu_online ................................. Passed 0.52 sec | |
Start 272: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
98/280 Test #272: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................ Passed 0.94 sec | |
Start 273: testcorenrn_watch::coreneuron_cpu_offline | |
99/280 Test #273: testcorenrn_watch::coreneuron_cpu_offline ................................ Passed 0.18 sec | |
Start 276: testcorenrn_netstimdirect::direct_netstimdirect | |
100/280 Test #276: testcorenrn_netstimdirect::direct_netstimdirect .......................... Passed 0.74 sec | |
Start 277: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
101/280 Test #277: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ......... Passed 0.80 sec | |
Start 22: datahandle::datahandle_tests | |
Start 23: coverage_tests::cover_tests | |
102/280 Test #22: datahandle::datahandle_tests ............................................. Passed 0.85 sec | |
Start 24: example_nmodl::ca_ap_hoc | |
103/280 Test #23: coverage_tests::cover_tests .............................................. Passed 1.06 sec | |
Start 25: example_nmodl::cabpump_hoc | |
104/280 Test #21: pytest_coreneuron::basic_tests_py3.10 .................................... Passed 4.97 sec | |
Start 26: example_nmodl::cachan_hoc | |
105/280 Test #26: example_nmodl::cachan_hoc ................................................ Passed 0.14 sec | |
Start 27: example_nmodl::cadif_hoc | |
106/280 Test #24: example_nmodl::ca_ap_hoc ................................................. Passed 0.40 sec | |
Start 28: example_nmodl::cadifusl_hoc | |
107/280 Test #25: example_nmodl::cabpump_hoc ............................................... Passed 0.24 sec | |
Start 29: example_nmodl::cadifusl1_hoc | |
108/280 Test #27: example_nmodl::cadif_hoc ................................................. Passed 0.17 sec | |
Start 30: example_nmodl::cadifusl2_hoc | |
109/280 Test #28: example_nmodl::cadifusl_hoc .............................................. Passed 0.19 sec | |
Start 31: example_nmodl::cagk_hoc | |
110/280 Test #31: example_nmodl::cagk_hoc .................................................. Passed 0.14 sec | |
Start 32: example_nmodl::capmp_hoc | |
111/280 Test #29: example_nmodl::cadifusl1_hoc ............................................. Passed 0.29 sec | |
Start 33: example_nmodl::cv_hoc | |
112/280 Test #30: example_nmodl::cadifusl2_hoc ............................................. Passed 0.17 sec | |
Start 34: example_nmodl::fh_hoc | |
113/280 Test #34: example_nmodl::fh_hoc .................................................... Passed 0.13 sec | |
Start 35: example_nmodl::fit1_hoc | |
114/280 Test #33: example_nmodl::cv_hoc .................................................... Passed 0.13 sec | |
Start 36: example_nmodl::gap_hoc | |
115/280 Test #32: example_nmodl::capmp_hoc ................................................. Passed 0.25 sec | |
Start 37: example_nmodl::hh1_hoc | |
116/280 Test #35: example_nmodl::fit1_hoc .................................................. Passed 0.14 sec | |
Start 38: example_nmodl::hhvect_hoc | |
117/280 Test #36: example_nmodl::gap_hoc ................................................... Passed 0.15 sec | |
Start 39: example_nmodl::nacum_hoc | |
118/280 Test #37: example_nmodl::hh1_hoc ................................................... Passed 0.14 sec | |
Start 40: example_nmodl::nadifl1_hoc | |
119/280 Test #38: example_nmodl::hhvect_hoc ................................................ Passed 0.14 sec | |
Start 41: example_nmodl::nadifl2_hoc | |
120/280 Test #39: example_nmodl::nacum_hoc ................................................. Passed 0.13 sec | |
Start 42: example_nmodl::nadifl3_hoc | |
121/280 Test #40: example_nmodl::nadifl1_hoc ............................................... Passed 0.16 sec | |
Start 43: example_nmodl::nadifl4_hoc | |
122/280 Test #42: example_nmodl::nadifl3_hoc ............................................... Passed 0.16 sec | |
Start 44: example_nmodl::obj_ex_hoc | |
123/280 Test #41: example_nmodl::nadifl2_hoc ............................................... Passed 0.17 sec | |
Start 45: example_nmodl::order_hoc | |
124/280 Test #44: example_nmodl::obj_ex_hoc ................................................ Passed 0.13 sec | |
Start 46: example_nmodl::passiv_hoc | |
125/280 Test #43: example_nmodl::nadifl4_hoc ............................................... Passed 0.17 sec | |
Start 47: example_nmodl::stim1_hoc | |
126/280 Test #45: example_nmodl::order_hoc ................................................. Passed 0.16 sec | |
Start 48: example_nmodl::syn1_hoc | |
127/280 Test #46: example_nmodl::passiv_hoc ................................................ Passed 0.14 sec | |
Start 49: example_nmodl::synpre_hoc | |
128/280 Test #47: example_nmodl::stim1_hoc ................................................. Passed 0.14 sec | |
Start 50: example_nmodl::tstextrn_hoc | |
129/280 Test #48: example_nmodl::syn1_hoc .................................................. Passed 0.14 sec | |
Start 51: example_nmodl::tstpnt1_hoc | |
130/280 Test #50: example_nmodl::tstextrn_hoc .............................................. Passed 0.14 sec | |
Start 52: example_nmodl::tstpnt2_hoc | |
131/280 Test #51: example_nmodl::tstpnt1_hoc ............................................... Passed 0.13 sec | |
Start 53: example_nmodl::tstvec_hoc | |
132/280 Test #49: example_nmodl::synpre_hoc ................................................ Passed 0.21 sec | |
Start 54: example_nmodl::cagkftab_py | |
133/280 Test #52: example_nmodl::tstpnt2_hoc ............................................... Passed 0.14 sec | |
Start 55: example_nmodl::expsynspine_py | |
134/280 Test #53: example_nmodl::tstvec_hoc ................................................ Passed 0.14 sec | |
Start 56: example_nmodl::nonlin_py | |
135/280 Test #55: example_nmodl::expsynspine_py ............................................ Passed 0.71 sec | |
Start 57: example_nmodl::tstpnt1_py | |
136/280 Test #57: example_nmodl::tstpnt1_py ................................................ Passed 0.51 sec | |
Start 58: example_nmodl::tstpnt2_py | |
137/280 Test #58: example_nmodl::tstpnt2_py ................................................ Passed 0.51 sec | |
Start 59: example_nmodl::vlag_py | |
138/280 Test #59: example_nmodl::vlag_py ................................................... Passed 0.53 sec | |
Start 60: hoctests::test_loadbal_hoc | |
139/280 Test #60: hoctests::test_loadbal_hoc ............................................... Passed 0.39 sec | |
Start 61: hoctests::perf1_hoc | |
140/280 Test #56: example_nmodl::nonlin_py ................................................. Passed 2.64 sec | |
Start 62: hoctests::test1_hoc | |
141/280 Test #62: hoctests::test1_hoc ...................................................... Passed 0.35 sec | |
Start 63: hoctests::test2_hoc | |
142/280 Test #63: hoctests::test2_hoc ...................................................... Passed 0.21 sec | |
Start 64: hoctests::test3_hoc | |
143/280 Test #64: hoctests::test3_hoc ...................................................... Passed 0.15 sec | |
Start 65: hoctests::test4_hoc | |
144/280 Test #65: hoctests::test4_hoc ...................................................... Passed 0.13 sec | |
Start 66: hoctests::test5_hoc | |
145/280 Test #66: hoctests::test5_hoc ...................................................... Passed 0.12 sec | |
Start 67: hoctests::test6_hoc | |
146/280 Test #67: hoctests::test6_hoc ...................................................... Passed 0.12 sec | |
Start 68: hoctests::test7_hoc | |
147/280 Test #68: hoctests::test7_hoc ...................................................... Passed 0.12 sec | |
Start 69: hoctests::test8_hoc | |
148/280 Test #69: hoctests::test8_hoc ...................................................... Passed 0.12 sec | |
Start 70: hoctests::test9_hoc | |
149/280 Test #61: hoctests::perf1_hoc ...................................................... Passed 1.49 sec | |
Start 71: hoctests::test_cvinterp_py | |
150/280 Test #70: hoctests::test9_hoc ...................................................... Passed 0.13 sec | |
Start 72: hoctests::test_hocGUI2_py | |
151/280 Test #54: example_nmodl::cagkftab_py ............................................... Passed 4.29 sec | |
Start 73: hoctests::test_kschan_py | |
152/280 Test #71: hoctests::test_cvinterp_py ............................................... Passed 0.78 sec | |
Start 74: hoctests::test_mechfunc_py | |
153/280 Test #72: hoctests::test_hocGUI2_py ................................................ Passed 0.80 sec | |
Start 75: hoctests::test_mode_py | |
154/280 Test #73: hoctests::test_kschan_py ................................................. Passed 0.81 sec | |
Start 76: hoctests::test_neurondemo_py | |
155/280 Test #74: hoctests::test_mechfunc_py ............................................... Passed 0.79 sec | |
Start 77: hoctests::test_nrniv-launch_py | |
156/280 Test #75: hoctests::test_mode_py ................................................... Passed 0.81 sec | |
Start 78: hoctests::test_setdata_py | |
157/280 Test #76: hoctests::test_neurondemo_py ............................................. Passed 0.80 sec | |
Start 79: hoctests::test_shape_py | |
158/280 Test #77: hoctests::test_nrniv-launch_py ........................................... Passed 0.36 sec | |
Start 80: hoctests::test_thread_partition_py | |
159/280 Test #78: hoctests::test_setdata_py ................................................ Passed 0.84 sec | |
Start 81: hoctests::test1_py | |
160/280 Test #79: hoctests::test_shape_py .................................................. Passed 0.83 sec | |
Start 82: hoctests::test2_py | |
161/280 Test #80: hoctests::test_thread_partition_py ....................................... Passed 1.07 sec | |
Start 83: hoctests::test9_py | |
162/280 Test #81: hoctests::test1_py ....................................................... Passed 0.70 sec | |
Start 89: coreneuron_standalone::test_nrn_corenrn_standalone | |
163/280 Test #82: hoctests::test2_py ....................................................... Passed 0.90 sec | |
Start 90: nmodl_tests::test_table | |
164/280 Test #83: hoctests::test9_py ....................................................... Passed 0.58 sec | |
Start 91: nmodl_tests::test_disc | |
165/280 Test #89: coreneuron_standalone::test_nrn_corenrn_standalone ....................... Passed 1.15 sec | |
Start 92: nmodl_tests::test_function_table | |
166/280 Test #90: nmodl_tests::test_table .................................................. Passed 1.01 sec | |
Start 93: nmodl_tests::test_kinetic | |
167/280 Test #91: nmodl_tests::test_disc ................................................... Passed 0.88 sec | |
Start 94: coreneuron_modtests::version_macros | |
168/280 Test #92: nmodl_tests::test_function_table ......................................... Passed 0.93 sec | |
Start 96: coreneuron_modtests::fornetcon_py_cpu | |
169/280 Test #93: nmodl_tests::test_kinetic ................................................ Passed 0.93 sec | |
Start 97: coreneuron_modtests::direct_py_cpu | |
170/280 Test #94: coreneuron_modtests::version_macros ...................................... Passed 1.23 sec | |
Start 98: coreneuron_modtests::direct_hoc_cpu | |
171/280 Test #96: coreneuron_modtests::fornetcon_py_cpu .................................... Passed 1.05 sec | |
Start 99: coreneuron_modtests::spikes_py_cpu | |
172/280 Test #98: coreneuron_modtests::direct_hoc_cpu ...................................... Passed 0.75 sec | |
Start 100: coreneuron_modtests::spikes_file_mode_py_cpu | |
173/280 Test #97: coreneuron_modtests::direct_py_cpu ....................................... Passed 1.08 sec | |
Start 101: coreneuron_modtests::fast_imem_py_cpu | |
174/280 Test #99: coreneuron_modtests::spikes_py_cpu ....................................... Passed 1.12 sec | |
Start 102: coreneuron_modtests::datareturn_py_cpu | |
175/280 Test #100: coreneuron_modtests::spikes_file_mode_py_cpu ............................. Passed 0.99 sec | |
Start 103: coreneuron_modtests::test_units_py_cpu | |
176/280 Test #101: coreneuron_modtests::fast_imem_py_cpu .................................... Passed 1.21 sec | |
Start 104: coreneuron_modtests::test_netmove_py_cpu | |
177/280 Test #103: coreneuron_modtests::test_units_py_cpu ................................... Passed 0.76 sec | |
Start 105: coreneuron_modtests::test_pointer_py_cpu | |
178/280 Test #102: coreneuron_modtests::datareturn_py_cpu ................................... Passed 1.58 sec | |
Start 106: coreneuron_modtests::test_watchrange_py_cpu | |
179/280 Test #104: coreneuron_modtests::test_netmove_py_cpu ................................. Passed 1.51 sec | |
Start 107: coreneuron_modtests::test_psolve_py_cpu | |
180/280 Test #106: coreneuron_modtests::test_watchrange_py_cpu .............................. Passed 0.84 sec | |
Start 108: coreneuron_modtests::test_ba_py_cpu | |
181/280 Test #107: coreneuron_modtests::test_psolve_py_cpu .................................. Passed 1.06 sec | |
Start 109: coreneuron_modtests::test_natrans_py_cpu | |
182/280 Test #108: coreneuron_modtests::test_ba_py_cpu ...................................... Passed 0.70 sec | |
Start 112: nmodl_tests_coreneuron::test_table_coreneuron_cpu | |
183/280 Test #109: coreneuron_modtests::test_natrans_py_cpu ................................. Passed 0.99 sec | |
Start 113: nmodl_tests_coreneuron::test_disc_coreneuron_cpu | |
184/280 Test #112: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................ Passed 0.86 sec | |
Start 114: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu | |
185/280 Test #105: coreneuron_modtests::test_pointer_py_cpu ................................. Passed 3.21 sec | |
Start 115: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu | |
186/280 Test #113: nmodl_tests_coreneuron::test_disc_coreneuron_cpu ......................... Passed 0.95 sec | |
Start 116: modlunit_unitstest | |
187/280 Test #115: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ...................... Passed 0.96 sec | |
Start 117: modlunit_hh | |
188/280 Test #114: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ............... Passed 0.99 sec | |
Start 118: modlunit_stim | |
189/280 Test #116: modlunit_unitstest ....................................................... Passed 0.23 sec | |
Start 119: modlunit_pattern | |
190/280 Test #117: modlunit_hh .............................................................. Passed 0.08 sec | |
Start 120: pyinit::nrniv_script.py | |
191/280 Test #118: modlunit_stim ............................................................ Passed 0.08 sec | |
Start 121: pyinit::nrniv_script.py_error | |
192/280 Test #119: modlunit_pattern ......................................................... Passed 0.08 sec | |
Start 122: pyinit::nrniv_two_scripts.py | |
193/280 Test #120: pyinit::nrniv_script.py .................................................. Passed 0.13 sec | |
Start 123: pyinit::nrniv_two_scripts.py_error_check_code | |
194/280 Test #121: pyinit::nrniv_script.py_error ............................................ Passed 0.12 sec | |
Start 124: pyinit::nrniv_two_scripts.py_error_check_output | |
195/280 Test #122: pyinit::nrniv_two_scripts.py ............................................. Passed 0.13 sec | |
Start 125: pyinit::nrniv_python_command | |
196/280 Test #123: pyinit::nrniv_two_scripts.py_error_check_code ............................ Passed 0.12 sec | |
Start 126: pyinit::nrniv_python_command_error | |
197/280 Test #124: pyinit::nrniv_two_scripts.py_error_check_output .......................... Passed 0.12 sec | |
Start 127: pyinit::nrniv_python_script.py | |
198/280 Test #125: pyinit::nrniv_python_command ............................................. Passed 0.13 sec | |
Start 128: pyinit::nrniv_python_script.py_error | |
199/280 Test #126: pyinit::nrniv_python_command_error ....................................... Passed 0.13 sec | |
Start 129: pyinit::nrniv_python_command_twice | |
200/280 Test #127: pyinit::nrniv_python_script.py ........................................... Passed 0.13 sec | |
Start 130: pyinit::nrniv_python_script.py_twice | |
201/280 Test #128: pyinit::nrniv_python_script.py_error ..................................... Passed 0.13 sec | |
Start 131: pyinit::nrniv_python_command_args | |
202/280 Test #129: pyinit::nrniv_python_command_twice ....................................... Passed 0.13 sec | |
Start 132: pyinit::nrniv_python_script.py_args | |
203/280 Test #130: pyinit::nrniv_python_script.py_twice ..................................... Passed 0.13 sec | |
Start 133: pyinit::nrniv_nopython_PythonObject | |
204/280 Test #131: pyinit::nrniv_python_command_args ........................................ Passed 0.13 sec | |
Start 134: pyinit::nrniv_nopython_PythonObject_pyexe | |
205/280 Test #133: pyinit::nrniv_nopython_PythonObject ...................................... Passed 0.11 sec | |
Start 135: pyinit::nrniv_nopython_PythonObject_pyenv | |
206/280 Test #132: pyinit::nrniv_python_script.py_args ...................................... Passed 0.13 sec | |
Start 136: pyinit::nrniv_py3.10_python_command_version_check | |
207/280 Test #134: pyinit::nrniv_nopython_PythonObject_pyexe ................................ Passed 0.11 sec | |
Start 137: pyinit::nrniv_py3.10_python_check_sys_path | |
208/280 Test #135: pyinit::nrniv_nopython_PythonObject_pyenv ................................ Passed 0.11 sec | |
Start 139: pyinit::nrniv_py3.10_nrnpython_check_sys_path | |
209/280 Test #136: pyinit::nrniv_py3.10_python_command_version_check ........................ Passed 0.13 sec | |
Start 141: pyinit::nrniv_py3.10_python_check_sys_prefix | |
210/280 Test #137: pyinit::nrniv_py3.10_python_check_sys_path ............................... Passed 0.13 sec | |
Start 143: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix | |
211/280 Test #139: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................ Passed 0.13 sec | |
Start 145: pyinit::nrniv_py3.10_python_check_sys_exec_prefix | |
212/280 Test #141: pyinit::nrniv_py3.10_python_check_sys_prefix ............................. Passed 0.13 sec | |
Start 147: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix | |
213/280 Test #143: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix .......................... Passed 0.13 sec | |
Start 149: pyinit::nrniv_py3.10_python_check_sys_base_prefix | |
214/280 Test #145: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................ Passed 0.13 sec | |
Start 151: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix | |
215/280 Test #147: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix ..................... Passed 0.13 sec | |
Start 153: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix | |
216/280 Test #149: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................ Passed 0.13 sec | |
Start 155: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix | |
217/280 Test #151: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix ..................... Passed 0.13 sec | |
Start 157: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding | |
218/280 Test #153: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ................... Passed 0.13 sec | |
Start 159: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding | |
219/280 Test #155: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................ Passed 0.13 sec | |
Start 161: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding | |
220/280 Test #157: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding .................... Passed 0.13 sec | |
Start 163: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding | |
221/280 Test #159: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding ................. Passed 0.13 sec | |
Start 165: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding | |
222/280 Test #161: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding ..................... Passed 0.13 sec | |
Start 167: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding | |
223/280 Test #163: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding .................. Passed 0.13 sec | |
Start 169: pyinit::nrniv_py3.10_python_command_import_neuron | |
224/280 Test #165: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding .................... Passed 0.13 sec | |
Start 170: pyinit::py3.10_command_import_neuron | |
225/280 Test #167: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding ................. Passed 0.13 sec | |
Start 171: pyinit::nrniv_py3.10_hoc_command_nrnpython | |
226/280 Test #171: pyinit::nrniv_py3.10_hoc_command_nrnpython ............................... Passed 0.24 sec | |
Start 172: pyinit::nrniv_pydef_python_command_version_check | |
227/280 Test #172: pyinit::nrniv_pydef_python_command_version_check ......................... Passed 0.20 sec | |
Start 173: pyinit::nrniv_pydef_python_check_sys_path | |
228/280 Test #169: pyinit::nrniv_py3.10_python_command_import_neuron ........................ Passed 0.65 sec | |
Start 175: pyinit::nrniv_pydef_nrnpython_check_sys_path | |
229/280 Test #170: pyinit::py3.10_command_import_neuron ..................................... Passed 0.62 sec | |
Start 177: pyinit::nrniv_pydef_python_check_sys_prefix | |
230/280 Test #173: pyinit::nrniv_pydef_python_check_sys_path ................................ Passed 0.14 sec | |
Start 179: pyinit::nrniv_pydef_nrnpython_check_sys_prefix | |
231/280 Test #175: pyinit::nrniv_pydef_nrnpython_check_sys_path ............................. Passed 0.13 sec | |
Start 181: pyinit::nrniv_pydef_python_check_sys_exec_prefix | |
232/280 Test #177: pyinit::nrniv_pydef_python_check_sys_prefix .............................. Passed 0.13 sec | |
Start 183: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix | |
233/280 Test #179: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ........................... Passed 0.13 sec | |
Start 185: pyinit::nrniv_pydef_python_check_sys_base_prefix | |
234/280 Test #181: pyinit::nrniv_pydef_python_check_sys_exec_prefix ......................... Passed 0.13 sec | |
Start 187: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix | |
235/280 Test #183: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ...................... Passed 0.13 sec | |
Start 189: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix | |
236/280 Test #185: pyinit::nrniv_pydef_python_check_sys_base_prefix ......................... Passed 0.13 sec | |
Start 191: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix | |
237/280 Test #191: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix ................. Passed 0.13 sec | |
Start 193: pyinit::nrniv_pydef_python_check_sys_stderr.encoding | |
238/280 Test #187: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ...................... Passed 0.13 sec | |
Start 195: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding | |
239/280 Test #189: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix .................... Passed 0.13 sec | |
Start 197: pyinit::nrniv_pydef_python_check_sys_stdin.encoding | |
240/280 Test #193: pyinit::nrniv_pydef_python_check_sys_stderr.encoding ..................... Passed 0.13 sec | |
Start 199: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding | |
241/280 Test #195: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding .................. Passed 0.13 sec | |
Start 201: pyinit::nrniv_pydef_python_check_sys_stdout.encoding | |
242/280 Test #197: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ...................... Passed 0.13 sec | |
Start 203: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding | |
243/280 Test #199: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ................... Passed 0.13 sec | |
Start 205: pyinit::nrniv_pydef_python_command_import_neuron | |
244/280 Test #201: pyinit::nrniv_pydef_python_check_sys_stdout.encoding ..................... Passed 0.13 sec | |
Start 206: pyinit::pydef_command_import_neuron | |
245/280 Test #203: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding .................. Passed 0.13 sec | |
Start 207: pyinit::nrniv_pydef_hoc_command_nrnpython | |
246/280 Test #207: pyinit::nrniv_pydef_hoc_command_nrnpython ................................ Passed 0.14 sec | |
Start 208: external_nrntest | |
247/280 Test #206: pyinit::pydef_command_import_neuron ...................................... Passed 0.61 sec | |
Start 228: testcorenrn_bbcore::compare_results | |
248/280 Test #205: pyinit::nrniv_pydef_python_command_import_neuron ......................... Passed 0.61 sec | |
Start 234: testcorenrn_conc::compare_results | |
249/280 Test #234: testcorenrn_conc::compare_results ........................................ Passed 0.14 sec | |
Start 240: testcorenrn_deriv::compare_results | |
250/280 Test #228: testcorenrn_bbcore::compare_results ...................................... Passed 0.15 sec | |
Start 246: testcorenrn_gf::compare_results | |
251/280 Test #240: testcorenrn_deriv::compare_results ....................................... Passed 0.02 sec | |
Start 252: testcorenrn_kin::compare_results | |
252/280 Test #246: testcorenrn_gf::compare_results .......................................... Passed 0.02 sec | |
Start 257: testcorenrn_patstim::compare_results | |
253/280 Test #252: testcorenrn_kin::compare_results ......................................... Passed 0.02 sec | |
Start 263: testcorenrn_vecplay::compare_results | |
254/280 Test #257: testcorenrn_patstim::compare_results ..................................... Passed 0.02 sec | |
Start 275: testcorenrn_watch::compare_results | |
255/280 Test #263: testcorenrn_vecplay::compare_results ..................................... Passed 0.02 sec | |
Start 278: testcorenrn_netstimdirect::compare_results | |
256/280 Test #275: testcorenrn_watch::compare_results ....................................... Passed 0.02 sec | |
257/280 Test #278: testcorenrn_netstimdirect::compare_results ............................... Passed 0.02 sec | |
Start 85: parallel::partrans | |
258/280 Test #85: parallel::partrans ....................................................... Passed 0.87 sec | |
Start 86: parallel::netpar | |
259/280 Test #86: parallel::netpar ......................................................... Passed 0.72 sec | |
Start 87: parallel::bas | |
260/280 Test #87: parallel::bas ............................................................ Passed 3.41 sec | |
Start 88: parallel::nrntest_fast | |
261/280 Test #88: parallel::nrntest_fast ................................................... Passed 1.19 sec | |
Start 95: coreneuron_modtests::inputpresyn_py | |
262/280 Test #95: coreneuron_modtests::inputpresyn_py ...................................... Passed 0.73 sec | |
Start 110: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
263/280 Test #110: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ......................... Passed 0.82 sec | |
Start 279: tqperf::coreneuron_special | |
264/280 Test #279: tqperf::coreneuron_special ............................................... Passed 2.38 sec | |
Start 280: tqperf::coreneuron_python | |
265/280 Test #280: tqperf::coreneuron_python ................................................ Passed 2.31 sec | |
266/280 Test #208: external_nrntest ......................................................... Passed 42.33 sec | |
Start 268: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
267/280 Test #268: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................ Passed 0.27 sec | |
Start 209: reduced_dentate::neuron | |
268/280 Test #209: reduced_dentate::neuron .................................................. Passed 39.74 sec | |
Start 210: reduced_dentate::coreneuron_cpu | |
269/280 Test #210: reduced_dentate::coreneuron_cpu .......................................... Passed 32.49 sec | |
Start 220: external_ringtest::coreneuron_cpu_mpi_threads | |
270/280 Test #220: external_ringtest::coreneuron_cpu_mpi_threads ............................ Passed 0.94 sec | |
Start 221: external_ringtest::coreneuron_cpu_mpi_threads_python | |
271/280 Test #221: external_ringtest::coreneuron_cpu_mpi_threads_python ..................... Passed 1.01 sec | |
Start 264: testcorenrn_vecevent::neuron | |
272/280 Test #264: testcorenrn_vecevent::neuron ............................................. Passed 0.26 sec | |
Start 265: testcorenrn_vecevent::coreneuron_cpu_online | |
273/280 Test #265: testcorenrn_vecevent::coreneuron_cpu_online .............................. Passed 0.57 sec | |
Start 266: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
274/280 Test #266: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ............. Passed 0.63 sec | |
Start 267: testcorenrn_vecevent::coreneuron_cpu_offline | |
275/280 Test #267: testcorenrn_vecevent::coreneuron_cpu_offline ............................. Passed 0.22 sec | |
Start 84: parallel::subworld | |
276/280 Test #84: parallel::subworld ....................................................... Passed 1.13 sec | |
Start 111: coreneuron_modtests::test_subworlds_py_cpu | |
277/280 Test #111: coreneuron_modtests::test_subworlds_py_cpu ............................... Passed 1.35 sec | |
Start 211: reduced_dentate::compare_results | |
Start 222: external_ringtest::compare_results | |
Start 269: testcorenrn_vecevent::compare_results | |
278/280 Test #269: testcorenrn_vecevent::compare_results .................................... Passed 0.02 sec | |
279/280 Test #211: reduced_dentate::compare_results ......................................... Passed 0.02 sec | |
280/280 Test #222: external_ringtest::compare_results ....................................... Passed 0.02 sec | |
100% tests passed, 0 tests failed out of 280 | |
Total Test time (real) = 167.54 sec | |
[32;1m$ cmake --build . --target install[0;m | |
[0/2] Re-checking globbed directories... | |
[1/5] Update hh.mod for CoreNEURON compatibility | |
[2/5] Generating help_data.dat | |
[3/5] cd /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h | |
fatal: No names found, cannot describe anything. | |
[4/5] Running utility command for hoc_module | |
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS | |
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk | |
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org | |
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0 | |
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'}) | |
INFO:root:RX3D is DISABLED | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. | |
!! | |
******************************************************************************** | |
Requirements should be satisfied by a PEP 517 installer. | |
If you are using pip, you can try `pip install --use-pep517`. | |
******************************************************************************** | |
!! | |
dist.fetch_build_eggs(dist.setup_requires) | |
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' | |
/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn" is shallow and may cause errors | |
warnings.warn(f'"{wd.path}" is shallow and may cause errors') | |
INFO:root:running build | |
INFO:root:running build_py | |
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron | |
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests | |
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:running build_ext | |
INFO:root:==> Building Python extensions | |
INFO:root:running build_scripts | |
[4/5] Install the project... | |
-- Install configuration: "Custom" | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/libsymtab.a | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/librxdmath.dylib | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/libnrniv.dylib | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/libnrngnu.a | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/libvisitor.a | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/hclass3.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/hoc.cpython-310-darwin.so | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/expect_hocerr.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/psection.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/neuroml | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/neuroml/metadata.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/neuroml/morphml.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/neuroml/xml2nrn.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/neuroml/__init__.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/neuroml/neuroml.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/neuroml/rdxml.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/neuroml/biophysics.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/config.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/units.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/sections.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdException.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/options.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/plugins.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdsection.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/species.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdmath.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/rate.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/region.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/multiCompartmentReaction.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/constants.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/dimension3.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/__init__.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/section1d.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/export.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/initializer.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/rangevar.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/geometry.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxd.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/generalizedReaction.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/nodelist.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/node.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/gui.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/rxd/reaction.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/tests | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/tests/_subclass.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/tests/test_all.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/tests/__init__.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/tests/utils | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/__init__.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/strtobool.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/capture_stdout.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/checkresult.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/tests/test_neuron.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/tests/test_vector.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/tests/test_rxd.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/__init__.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/_config_params.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/coreneuron.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/doc.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/gui2 | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/gui2/setup_threejs.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/gui2/config.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/gui2/__init__.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/gui2/rangevar.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/gui2/plotshape.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/gui2/utilities.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/crxd | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/crxd/__init__.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/help_data.dat | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/gui.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/python/neuron/nonvint_block_supervisor.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/libspdlog.a | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/libfmt.a | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/nmodl | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/nmodl/dsl.py | |
-- Installing: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/lib/nmodl/symtab.py | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/Eigen/KLUSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/nrnapi.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/nrncvode.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/nrnsemanticversion.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/spmatrix.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/ocfunc.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/section_fwd.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/row_view.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/hoc_membf.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/backtrace_utils.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/nrnisaac.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/parse_with_deps.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/newton_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/nrnredef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/dimplic.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/hoc.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/newton.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/crout.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/nrnmpiuse.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/md1redef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/nrniv_mf.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/memory.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/nrn_ansi.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/deflate.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/errcodes.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/nrniv | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/engine.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/gpu | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mechanism | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mpi | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mpi/core | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mpi/lib | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/config | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/config/config.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/network | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/reports | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/profile | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/randoms | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/nrnoc | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/sim | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/apps | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/permute | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P188550/J1132999/hpc/cellular/nrn/install/include/nrnassrt.h | |
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