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Created May 31, 2024 14:23
Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/214142 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2891.
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1717164070:resolve_secrets Resolving secrets
section_end:1717164070:resolve_secrets section_start:1717164070:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3652909361, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 214142, build ref , job ID 1302248
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1302248_PROD_P2160_CP0_C0
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2225929
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1302248_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --ntasks=2 --jobid=2225929 --cpus-per-task=8 --mem=160G
section_end:1717164071:prepare_executor section_start:1717164071:prepare_script Preparing environment
Using git from spack modules
Running on r1i5n23 via bbpv1.epfl.ch...
section_end:1717164075:prepare_script section_start:1717164075:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1717164076:get_sources section_start:1717164076:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=152779 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1717164082:restore_cache section_start:1717164082:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1302247)...
Runtime platform  arch=amd64 os=linux pid=153102 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1302247 responseStatus=200 OK token=glcbt-64
section_end:1717164084:download_artifacts section_start:1717164084:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142/J1302248_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/dvmlelhim7w6kad6xan52v3rcqu3z3jb
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2225929/ccache
Config file: /nvme/bbpcihpcproj12/2225929/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Fri May 31 16:01:31 2024
Local storage:
Cache size (GB): 0.47 / 0.51 (90.96%)
Files: 16538
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/dvmlelhim7w6kad6xan52v3rcqu3z3jb
Concretized
--------------------------------
- kyamgd2 neuron@git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- fz3oxtc ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] dvmlelh ^nmodl@git.6426652bba919a208b785054e3fd12c42587bb68=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] tdpazhn ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] p4lv577 ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4r6gjx7 ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ou7zcb6 ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 5xwjejc ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-p4lv57
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul [39/49]
==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul
Stage: 2.29s. Cmake: 5.21s. Build: 1.56s. Install: 0.11s. Post-install: 0.10s. Total: 9.43s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-tdpazh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-5xwjej
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd12c42587bb68_develop-dvmlel
==> Installing neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop-kyamgd2pt7544r7r4sqmjat75bulhr3o [49/49]
==> No binary for neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop-kyamgd2pt7544r7r4sqmjat75bulhr3o found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
13 errors found in build log:
2868 WARNING: No mod files found, compiling default ones only!
2869 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r
4sqmjat75bulhr3o/spack-build-kyamgd2/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bu
lhr3o/spack-build-kyamgd2 MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software
/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd
12c42587bb68_develop-dvmlel/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
2870 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r
4sqmjat75bulhr3o/spack-build-kyamgd2'
2871 make -f src/nrniv/CMakeFiles/nrniv_lib.dir/build.make src/nrniv/C
MakeFiles/nrniv_lib.dir/build
2872 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-gi
t.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7
r4sqmjat75bulhr3o/spack-build-kyamgd2/bin'
2873 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2874 make[3]: xcrun: No such file or directory
2875 Default NMODL flags:
2876 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-gi
t.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7
r4sqmjat75bulhr3o/spack-build-kyamgd2'
>> 2877 mod_func.c.pl: No mod files provideddiff: x86_64/corenrn/mod2c/_mo
d_func.cpp: No such file or directory
2878 [ 34%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/apwindow.cpp.o
2879 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-bu
ild-kyamgd2/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmja
t75bulhr3o/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2p
t7544r7r4sqmjat75bulhr3o/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build
-kyamgd2 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/
spack-build-kyamgd2/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt
7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-build-kyamgd2/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt75
44r7r4sqmjat75bulhr3o/spack-build-kyamgd2/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
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_lib.dir/__/ivoc/axis.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-
git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544
r7r4sqmjat75bulhr3o/spack-src/src/ivoc/axis.cpp
2882 [ 34%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/bndedval.cpp.o
2883 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-bu
ild-kyamgd2/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmja
t75bulhr3o/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2p
t7544r7r4sqmjat75bulhr3o/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build
-kyamgd2 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/
spack-build-kyamgd2/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt
7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-build-kyamgd2/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt75
44r7r4sqmjat75bulhr3o/spack-build-kyamgd2/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-build-kyamgd2/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat
75bulhr3o/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt
7544r7r4sqmjat75bulhr3o/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmj
at75bulhr3o/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bu
lhr3o/spack-build-kyamgd2/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3
o/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7
544r7r4sqmjat75bulhr3o/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamg
d2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
8/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmj
at75bulhr3o/spack-src/external/eigen -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise -std=c++17 -fPIC -pthread
-MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/bndedval.cpp.o
-MF CMakeFiles/nrniv_lib.dir/__/ivoc/bndedval.cpp.o.d -o CMakeFil
es/nrniv_lib.dir/__/ivoc/bndedval.cpp.o -c /gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-s
tage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-k
yamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/ivoc/bndedval.cpp
...
2899 [ 34%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/grglyph.cpp.o
2900 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-bu
ild-kyamgd2/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmja
t75bulhr3o/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2p
t7544r7r4sqmjat75bulhr3o/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build
-kyamgd2 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/
spack-build-kyamgd2/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt
7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-build-kyamgd2/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt75
44r7r4sqmjat75bulhr3o/spack-build-kyamgd2/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-build-kyamgd2/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat
75bulhr3o/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt
7544r7r4sqmjat75bulhr3o/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmj
at75bulhr3o/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bu
lhr3o/spack-build-kyamgd2/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3
o/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7
544r7r4sqmjat75bulhr3o/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamg
d2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
8/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmj
at75bulhr3o/spack-src/external/eigen -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise -std=c++17 -fPIC -pthread
-MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grglyph.cpp.o
-MF CMakeFiles/nrniv_lib.dir/__/ivoc/grglyph.cpp.o.d -o CMakeFiles
/nrniv_lib.dir/__/ivoc/grglyph.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stag
e-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyam
gd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/ivoc/grglyph.cpp
2901 [ 34%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/grmanip.cpp.o
2902 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-bu
ild-kyamgd2/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmja
t75bulhr3o/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2p
t7544r7r4sqmjat75bulhr3o/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build
-kyamgd2 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/
spack-build-kyamgd2/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt
7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-build-kyamgd2/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt75
44r7r4sqmjat75bulhr3o/spack-build-kyamgd2/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-build-kyamgd2/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat
75bulhr3o/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt
7544r7r4sqmjat75bulhr3o/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmj
at75bulhr3o/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bu
lhr3o/spack-build-kyamgd2/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3
o/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7
544r7r4sqmjat75bulhr3o/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamg
d2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
8/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmj
at75bulhr3o/spack-src/external/eigen -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise -std=c++17 -fPIC -pthread
-MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grmanip.cpp.o
-MF CMakeFiles/nrniv_lib.dir/__/ivoc/grmanip.cpp.o.d -o CMakeFiles
/nrniv_lib.dir/__/ivoc/grmanip.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stag
e-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyam
gd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/ivoc/grmanip.cpp
2903 [ 34%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/hocmark.cpp.o
2904 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-bu
ild-kyamgd2/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmja
t75bulhr3o/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2p
t7544r7r4sqmjat75bulhr3o/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build
-kyamgd2 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/
spack-build-kyamgd2/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt
7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-build-kyamgd2/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt75
44r7r4sqmjat75bulhr3o/spack-build-kyamgd2/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-build-kyamgd2/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat
75bulhr3o/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt
7544r7r4sqmjat75bulhr3o/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmj
at75bulhr3o/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bu
lhr3o/spack-build-kyamgd2/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3
o/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7
544r7r4sqmjat75bulhr3o/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamg
d2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
8/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmj
at75bulhr3o/spack-src/external/eigen -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise -std=c++17 -fPIC -pthread
-MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp.o
-MF CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp.o.d -o CMakeFiles
/nrniv_lib.dir/__/ivoc/hocmark.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stag
e-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyam
gd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/ivoc/hocmark.cpp
>> 2905 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: x86_64/libcorenrnme
ch_internal.a(mk_mech.cpp.o):(.rodata+0x8): undefined reference to
`coreneuron::_passive_reg()'
2906 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: x86_64/libcorenrnme
ch_internal.a(nrn2core_data_init.cpp.o): in function `coreneuron::
nrn2core_patstim_share_info()':
>> 2907 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P204998/J1239
687/spack-build/spack-stage-neuron-git.b59524a62aca3460c37f6404b39
2a4ff39a588ac_develop-uj27j5hentqkjbpan73gh3nlbuaoo7is/spack-build
-uj27j5h/src/coreneuron/../../../spack-src/src/coreneuron/io/nrn2c
ore_data_init.cpp:439:(.text+0x2d8): undefined reference to `coren
euron::pattern_stim_info_ref(int, int, double*, int*, coreneuron::
ThreadDatum*, coreneuron::NrnThread*, coreneuron::Memb_list*, doub
le)'
2908 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: x86_64/libcorenrnme
ch_internal.a(nrn_checkpoint.cpp.o): in function `coreneuron::Chec
kPoints::write_tqueue(coreneuron::NrnThread&, coreneuron::FileHand
ler&) const':
>> 2909 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P206388/J1248
654/spack-build/spack-stage-neuron-git.fd9bb334d44d015a8c9ffa3ea60
e3874bc961f14_develop-qakv3dkfxxs4nuxbj2dhg66fa7hgmdxp/spack-build
-qakv3dk/src/coreneuron/../../../spack-src/src/coreneuron/io/nrn_c
heckpoint.cpp:831:(.text+0x2d3d): undefined reference to `coreneur
on::checkpoint_save_patternstim(int, int, double*, int*, coreneuro
n::ThreadDatum*, coreneuron::NrnThread*, coreneuron::Memb_list*, d
ouble)'
2910 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: x86_64/libcorenrnme
ch_internal.a(nrn_checkpoint.cpp.o): in function `coreneuron::Chec
kPoints::initialize()':
>> 2911 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P206388/J1248
654/spack-build/spack-stage-neuron-git.fd9bb334d44d015a8c9ffa3ea60
e3874bc961f14_develop-qakv3dkfxxs4nuxbj2dhg66fa7hgmdxp/spack-build
-qakv3dk/src/coreneuron/../../../spack-src/src/coreneuron/io/nrn_c
heckpoint.cpp:619:(.text+0x3055): undefined reference to `coreneur
on::checkpoint_restore_patternstim(int, double, int, int, double*,
int*, coreneuron::ThreadDatum*, coreneuron::NrnThread*, coreneuro
n::Memb_list*, double)'
2912 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: x86_64/libcorenrnme
ch_internal.a(patternstim.cpp.o): in function `coreneuron::nrn_set
_extra_thread0_vdata()':
>> 2913 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P206292/J1248
195/spack-build/spack-stage-neuron-git.3f3221c69c55f1cbb3ba71ca52f
f7e5be95a9095_develop-dog6xtrrite47x6hzk2a2h5ca2tknnoo/spack-build
-dog6xtr/src/coreneuron/../../../spack-src/src/coreneuron/mechanis
m/patternstim.cpp:53:(.text+0x29): undefined reference to `coreneu
ron::_pattern_reg()'
2914 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: x86_64/libcorenrnme
ch_internal.a(patternstim.cpp.o): in function `coreneuron::nrn_mkP
atternStim(char const*, double)':
>> 2915 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P206292/J1248
195/spack-build/spack-stage-neuron-git.3f3221c69c55f1cbb3ba71ca52f
f7e5be95a9095_develop-dog6xtrrite47x6hzk2a2h5ca2tknnoo/spack-build
-dog6xtr/src/coreneuron/../../../spack-src/src/coreneuron/mechanis
m/patternstim.cpp:97:(.text+0x5f6): undefined reference to `corene
uron::pattern_stim_setup_helper(int, double*, int*, int, int, doub
le*, int*, coreneuron::ThreadDatum*, coreneuron::NrnThread*, coren
euron::Memb_list*, double)'
>> 2916 icpx: error: linker command failed with exit code 1 (use -v to see
invocation)
>> 2917 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e
7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr
3o/spack-build-kyamgd2/share/coreneuron/nrnivmodl_core_makefile:15
0: x86_64/special-core] Error 1
2918 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r
4sqmjat75bulhr3o/spack-build-kyamgd2/bin'
>> 2919 make[2]: *** [src/coreneuron/CMakeFiles/nrniv-core.dir/build.make:
88: bin/x86_64/special-core] Error 2
2920 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r
4sqmjat75bulhr3o/spack-build-kyamgd2'
>> 2921 make[1]: *** [CMakeFiles/Makefile2:2149: src/coreneuron/CMakeFiles
/nrniv-core.dir/all] Error 2
2922 make[1]: *** Waiting for unfinished jobs....
2923 [ 34%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/htlist.cpp.o
2924 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-bu
ild-kyamgd2/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmja
t75bulhr3o/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2p
t7544r7r4sqmjat75bulhr3o/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build
-kyamgd2 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/
spack-build-kyamgd2/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt
7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build-kyamgd2/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulh
r3o/spack-build-kyamgd2/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt75
44r7r4sqmjat75bulhr3o/spack-build-kyamgd2/src/parallel -I/gpfs/bbp
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s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
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pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
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k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
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pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
8/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
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/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f
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-MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o -
MF CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o.d -o CMakeFiles/n
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map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-n
euron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2
pt7544r7r4sqmjat75bulhr3o/spack-src/src/ivoc/htlist.cpp
2925 [ 34%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/idraw.cpp.o
2926 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
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ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
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k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
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/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
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4sqmjat75bulhr3o/spack-build-kyamgd2'
3414 [ 45%] Built target nrniv_lib
3415 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r
4sqmjat75bulhr3o/spack-build-kyamgd2'
>> 3416 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302248/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-kyamgd2pt7544r7r4sqmjat75bulhr3o/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i5n23: task 0: Exited with exit code 1
section_end:1717164889:step_script section_start:1717164889:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=188468 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1302248 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=188526 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1302248 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=188593 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1302248 responseStatus=201 Created token=glcbt-64
section_end:1717164892:upload_artifacts_on_failure section_start:1717164892:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1717164893:cleanup_file_variables ERROR: Job failed: exit status 1

Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1717164070:resolve_secrets Resolving secrets
section_end:1717164070:resolve_secrets section_start:1717164070:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1521069088, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 214142, build ref , job ID 1302249
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1302249_PROD_P2160_CP1_C5
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2225930
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1302249_PROD_P2160_CP1_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --ntasks=2 --jobid=2225930 --cpus-per-task=8 --mem=160G
section_end:1717164072:prepare_executor section_start:1717164072:prepare_script Preparing environment
Using git from spack modules
Running on r1i5n3 via bbpv1.epfl.ch...
section_end:1717164076:prepare_script section_start:1717164076:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1717164078:get_sources section_start:1717164078:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:shared-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=244812 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1717164086:restore_cache section_start:1717164086:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1302247)...
Runtime platform  arch=amd64 os=linux pid=244953 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1302247 responseStatus=200 OK token=glcbt-64
section_end:1717164093:download_artifacts section_start:1717164093:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142/J1302249_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/dvmlelhim7w6kad6xan52v3rcqu3z3jb
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2225930/ccache
Config file: /nvme/bbpcihpcproj12/2225930/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Fri May 31 16:03:51 2024
Local storage:
Cache size (GB): 0.46 / 0.51 (90.68%)
Files: 15574
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/dvmlelhim7w6kad6xan52v3rcqu3z3jb
Concretized
--------------------------------
- 6hzfjwu neuron@git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[+] fz3oxtc ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] dvmlelh ^nmodl@git.6426652bba919a208b785054e3fd12c42587bb68=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] tdpazhn ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] p4lv577 ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4r6gjx7 ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ou7zcb6 ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 5xwjejc ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-p4lv57
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-tdpazh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd12c42587bb68_develop-dvmlel
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-5xwjej
==> Installing neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop-6hzfjwudndkxash6cpegpu2qypp4yfil [49/49]
==> No binary for neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop-6hzfjwudndkxash6cpegpu2qypp4yfil found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
13 errors found in build log:
2890 [ 35%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/fourier.cpp.o
2891 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-bu
ild-6hzfjwu/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu
2qypp4yfil/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwud
ndkxash6cpegpu2qypp4yfil/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build
-6hzfjwu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/
spack-build-6hzfjwu/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndk
xash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
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cproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2
qypp4yfil/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e
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4yfil/spack-build-6hzfjwu/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfi
l/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudnd
kxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfj
wudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
9/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/external/eigen -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise -std=c++17 -fPIC -pthread
-MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/fourier.cpp.o
-MF CMakeFiles/nrniv_lib.dir/__/ivoc/fourier.cpp.o.d -o CMakeFiles
/nrniv_lib.dir/__/ivoc/fourier.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stag
e-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzf
jwudndkxash6cpegpu2qypp4yfil/spack-src/src/ivoc/fourier.cpp
2892 WARNING: No mod files found, compiling default ones only!
2893 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6
cpegpu2qypp4yfil/spack-build-6hzfjwu/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp
4yfil/spack-build-6hzfjwu MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software
/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd
12c42587bb68_develop-dvmlel/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
2894 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-gi
t.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash
6cpegpu2qypp4yfil/spack-build-6hzfjwu/bin'
2895 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2896 make[3]: xcrun: No such file or directory
2897 Default NMODL flags:
>> 2898 mod_func.c.pl: No mod files provideddiff: x86_64/corenrn/mod2c/_mo
d_func.cpp: No such file or directory
2899 [ 35%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/gifimage.cpp.o
2900 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-bu
ild-6hzfjwu/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
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2qypp4yfil/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-ne
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sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spa
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p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
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spack-build-6hzfjwu/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
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dkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/nrnoc -I/gpfs/bbp.
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rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
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src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
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k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
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pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
9/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/external/eigen -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise -std=c++17 -fPIC -pthread
-MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/gifimage.cpp.o
-MF CMakeFiles/nrniv_lib.dir/__/ivoc/gifimage.cpp.o.d -o CMakeFil
es/nrniv_lib.dir/__/ivoc/gifimage.cpp.o -c /gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-s
tage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6
hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/ivoc/gifimage.cpp
2901 [ 35%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/graph.cpp.o
2902 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-bu
ild-6hzfjwu/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu
2qypp4yfil/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwud
ndkxash6cpegpu2qypp4yfil/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build
-6hzfjwu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/
spack-build-6hzfjwu/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndk
xash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2
qypp4yfil/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp
4yfil/spack-build-6hzfjwu/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfi
l/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudnd
kxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfj
wudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
9/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/external/eigen -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise -std=c++17 -fPIC -pthread
-MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/graph.cpp.o -M
F CMakeFiles/nrniv_lib.dir/__/ivoc/graph.cpp.o.d -o CMakeFiles/nrn
iv_lib.dir/__/ivoc/graph.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudnd
kxash6cpegpu2qypp4yfil/spack-src/src/ivoc/graph.cpp
2903 [ 35%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/graphvec.cpp.o
2904 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-bu
ild-6hzfjwu/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu
2qypp4yfil/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwud
ndkxash6cpegpu2qypp4yfil/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build
-6hzfjwu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/
spack-build-6hzfjwu/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndk
xash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2
qypp4yfil/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp
4yfil/spack-build-6hzfjwu/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfi
l/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudnd
kxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfj
wudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
9/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/external/eigen -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise -std=c++17 -fPIC -pthread
-MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/graphvec.cpp.o
-MF CMakeFiles/nrniv_lib.dir/__/ivoc/graphvec.cpp.o.d -o CMakeFil
es/nrniv_lib.dir/__/ivoc/graphvec.cpp.o -c /gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-s
tage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6
hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/ivoc/graphvec.cpp
...
2916 [ 36%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ivoc.cpp.o
2917 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-bu
ild-6hzfjwu/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu
2qypp4yfil/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwud
ndkxash6cpegpu2qypp4yfil/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build
-6hzfjwu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/
spack-build-6hzfjwu/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndk
xash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2
qypp4yfil/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp
4yfil/spack-build-6hzfjwu/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfi
l/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudnd
kxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfj
wudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
9/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/external/eigen -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise -std=c++17 -fPIC -pthread
-MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o -MF
CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o.d -o CMakeFiles/nrniv
_lib.dir/__/ivoc/ivoc.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-
git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxa
sh6cpegpu2qypp4yfil/spack-src/src/ivoc/ivoc.cpp
2918 [ 36%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ivocmain.cpp.o
2919 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-bu
ild-6hzfjwu/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu
2qypp4yfil/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwud
ndkxash6cpegpu2qypp4yfil/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build
-6hzfjwu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/
spack-build-6hzfjwu/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndk
xash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2
qypp4yfil/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp
4yfil/spack-build-6hzfjwu/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfi
l/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudnd
kxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfj
wudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
9/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/external/eigen -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise -std=c++17 -fPIC -pthread
-MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o
-MF CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o.d -o CMakeFil
es/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o -c /gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-s
tage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6
hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/ivoc/ivocmain.cpp
2920 [ 36%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ivocrand.cpp.o
2921 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-bu
ild-6hzfjwu/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu
2qypp4yfil/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwud
ndkxash6cpegpu2qypp4yfil/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build
-6hzfjwu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/
spack-build-6hzfjwu/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndk
xash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2
qypp4yfil/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp
4yfil/spack-build-6hzfjwu/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfi
l/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudnd
kxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfj
wudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
9/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
de/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/external/eigen -march=skylake -mtune=skylake
-fopenmp-simd -g -O1 -fp-model precise -std=c++17 -fPIC -pthread
-MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocrand.cpp.o
-MF CMakeFiles/nrniv_lib.dir/__/ivoc/ivocrand.cpp.o.d -o CMakeFil
es/nrniv_lib.dir/__/ivoc/ivocrand.cpp.o -c /gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-s
tage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6
hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/ivoc/ivocrand.cpp
>> 2922 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: x86_64/libcorenrnme
ch_internal.so: undefined reference to `coreneuron::_pattern_reg()
'
>> 2923 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: x86_64/libcorenrnme
ch_internal.so: undefined reference to `coreneuron::pattern_stim_i
nfo_ref(int, int, double*, int*, coreneuron::ThreadDatum*, coreneu
ron::NrnThread*, coreneuron::Memb_list*, double)'
>> 2924 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: x86_64/libcorenrnme
ch_internal.so: undefined reference to `coreneuron::checkpoint_sav
e_patternstim(int, int, double*, int*, coreneuron::ThreadDatum*, c
oreneuron::NrnThread*, coreneuron::Memb_list*, double)'
>> 2925 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: x86_64/libcorenrnme
ch_internal.so: undefined reference to `coreneuron::_passive_reg()
'
>> 2926 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: x86_64/libcorenrnme
ch_internal.so: undefined reference to `coreneuron::checkpoint_res
tore_patternstim(int, double, int, int, double*, int*, coreneuron:
:ThreadDatum*, coreneuron::NrnThread*, coreneuron::Memb_list*, dou
ble)'
>> 2927 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_
gcc-4.8.5-haswell/binutils-2.41-o6yabj/bin/ld: x86_64/libcorenrnme
ch_internal.so: undefined reference to `coreneuron::pattern_stim_s
etup_helper(int, double*, int*, int, int, double*, int*, coreneuro
n::ThreadDatum*, coreneuron::NrnThread*, coreneuron::Memb_list*, d
ouble)'
>> 2928 icpx: error: linker command failed with exit code 1 (use -v to see
invocation)
>> 2929 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e
7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yf
il/spack-build-6hzfjwu/share/coreneuron/nrnivmodl_core_makefile:15
0: x86_64/special-core] Error 1
2930 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6
cpegpu2qypp4yfil/spack-build-6hzfjwu/bin'
>> 2931 make[2]: *** [src/coreneuron/CMakeFiles/nrniv-core.dir/build.make:
88: bin/x86_64/special-core] Error 2
2932 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6
cpegpu2qypp4yfil/spack-build-6hzfjwu'
>> 2933 make[1]: *** [CMakeFiles/Makefile2:2157: src/coreneuron/CMakeFiles
/nrniv-core.dir/all] Error 2
2934 make[1]: *** Waiting for unfinished jobs....
2935 [ 36%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ivocvect.cpp.o
2936 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-bu
ild-6hzfjwu/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu
2qypp4yfil/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwud
ndkxash6cpegpu2qypp4yfil/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build
-6hzfjwu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/
spack-build-6hzfjwu/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndk
xash6cpegpu2qypp4yfil/spack-build-6hzfjwu/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-6hzfjwu/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-build-6hzfjwu/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2
qypp4yfil/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudn
dkxash6cpegpu2qypp4yfil/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegp
u2qypp4yfil/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp
4yfil/spack-build-6hzfjwu/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/ivos -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nr
npython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfi
l/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudnd
kxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpy
thon/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4y
fil/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfj
wudndkxash6cpegpu2qypp4yfil/spack-src/src/nrnpython/../nrnmpi -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130224
9/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-src/src
/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/sta
ge_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/inclu
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itlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-s
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2937 [ 36%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/matrix.cpp.o
2938 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
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line-8.2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag
e_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib:/
gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_g
cc-12.3.0-skylake/python-3.11.6-bj4i6m/lib::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::: ../../lib/libnrngnu.a ../../lib/libsparse13.a /g
pfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install
_gcc-12.3.0-skylake/readline-8.2-pdugg7/lib/libreadline.so /gpfs/b
bp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-
12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libcurses.so /gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-s
kylake/ncurses-6.4-6kdbhv/lib/libform.so -ldl /gpfs/bbp.cscs.ch/ss
d/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/p
ython-3.11.6-bj4i6m/lib/libpython3.11.so -pthread
3415 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6
cpegpu2qypp4yfil/spack-build-6hzfjwu'
3416 [ 46%] Built target nrniv_lib
3417 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6
cpegpu2qypp4yfil/spack-build-6hzfjwu'
>> 3418 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302249/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-6hzfjwudndkxash6cpegpu2qypp4yfil/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i5n3: task 0: Exited with exit code 1
section_end:1717164871:step_script section_start:1717164871:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=255990 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1302249 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=256031 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1302249 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=256075 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1302249 responseStatus=201 Created token=glcbt-64
section_end:1717164873:upload_artifacts_on_failure section_start:1717164873:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1717164875:cleanup_file_variables ERROR: Job failed: exit status 1

Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1717164071:resolve_secrets Resolving secrets
section_end:1717164071:resolve_secrets section_start:1717164071:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor539661539, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 214142, build ref , job ID 1302250
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1302250_PROD_P2160_CP2_C6
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2225931
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1302250_PROD_P2160_CP2_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --ntasks=2 --jobid=2225931 --cpus-per-task=8 --mem=160G
section_end:1717164075:prepare_executor section_start:1717164075:prepare_script Preparing environment
Using git from spack modules
Running on r1i4n2 via bbpv1.epfl.ch...
section_end:1717164078:prepare_script section_start:1717164078:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1717164079:get_sources section_start:1717164079:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=228375 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1717164085:restore_cache section_start:1717164085:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1302247)...
Runtime platform  arch=amd64 os=linux pid=228482 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1302247 responseStatus=200 OK token=glcbt-64
section_end:1717164087:download_artifacts section_start:1717164087:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142/J1302250_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/dvmlelhim7w6kad6xan52v3rcqu3z3jb
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2225931/ccache
Config file: /nvme/bbpcihpcproj12/2225931/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Fri May 31 16:01:32 2024
Local storage:
Cache size (GB): 0.46 / 0.51 (89.99%)
Files: 16381
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/dvmlelhim7w6kad6xan52v3rcqu3z3jb
Concretized
--------------------------------
- ywdt3hw neuron@git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] dvmlelh ^nmodl@git.6426652bba919a208b785054e3fd12c42587bb68=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] tdpazhn ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] p4lv577 ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4r6gjx7 ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ou7zcb6 ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 5xwjejc ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-p4lv57
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g [39/50]
==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g
Stage: 2.35s. Cmake: 4.09s. Build: 1.30s. Install: 0.10s. Post-install: 0.11s. Total: 8.14s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-tdpazh
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd12c42587bb68_develop-dvmlel
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-5xwjej
==> Installing neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn [50/50]
==> No binary for neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
12 errors found in build log:
3024 [ 30%] Running nrnivmodl-core with internal mod files
3025 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302250/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-bu
ild-ywdt3hw/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswc
keoud6rn/spack-build-ywdt3hw/bin/nrnivmodl-core -b STATIC -m /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/i
nstall_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd12
c42587bb68_develop-dvmlel/bin/nmodl -n internal -p 4 .
3026 WARNING: No mod files found, compiling default ones only!
3027 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6x
kq3wwswckeoud6rn/spack-build-ywdt3hw/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeo
ud6rn/spack-build-ywdt3hw MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software
/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd
12c42587bb68_develop-dvmlel/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
3028 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-gi
t.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6
xkq3wwswckeoud6rn/spack-build-ywdt3hw/bin'
3029 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3030 make[3]: xcrun: No such file or directory
3031 Default NMODL flags:
>> 3032 mod_func.c.pl: No mod files provideddiff: x86_64/corenrn/mod2c/_mo
d_func.cpp: No such file or directory
3033 make -f src/coreneuron/CMakeFiles/coreneuron-for-tests.dir/build.
make src/coreneuron/CMakeFiles/coreneuron-for-tests.dir/depend
3034 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-gi
t.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6
xkq3wwswckeoud6rn/spack-build-ywdt3hw'
3035 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302250/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-bu
ild-ywdt3hw && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron
-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2r
xx6xkq3wwswckeoud6rn/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-
git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rx
x6xkq3wwswckeoud6rn/spack-src/src/coreneuron /gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-build-ywdt3hw /gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-bu
ild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d
8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-build-ywdt3hw/src
/coreneuron /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn
/spack-build-ywdt3hw/src/coreneuron/CMakeFiles/coreneuron-for-test
s.dir/DependInfo.cmake "--color="
3036 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6x
kq3wwswckeoud6rn/spack-build-ywdt3hw'
3037 make -f src/coreneuron/CMakeFiles/coreneuron-for-tests.dir/build.
make src/coreneuron/CMakeFiles/coreneuron-for-tests.dir/build
3038 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-gi
t.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6
xkq3wwswckeoud6rn/spack-build-ywdt3hw'
...
3062 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/oc2iv.cpp.o
3063 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302250/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-bu
ild-ywdt3hw/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wws
wckeoud6rn/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwc
ro2rxx6xkq3wwswckeoud6rn/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
250/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-build
-ywdt3hw -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/
spack-build-ywdt3hw/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcr
o2rxx6xkq3wwswckeoud6rn/spack-build-ywdt3hw/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-build-ywdt3hw/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud
6rn/spack-build-ywdt3hw/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2
rxx6xkq3wwswckeoud6rn/spack-build-ywdt3hw/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-build-ywdt3hw/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud
6rn/spack-build-ywdt3hw/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
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rn/spack-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-poi
nter --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,5
41,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_
lib.dir/__/ivoc/ocbox.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivoc/o
cbox.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/ocbox.cpp.o -c /g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130225
0/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9
5818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src
/ivoc/ocbox.cpp
3066 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2225931/pgcudafat4bC5O-nF6_Px.o: missing .note.GNU-sta
ck section implies executable stack
3067 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
>> 3068 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(mk_mech.cpp.o):(.data+0xd28): undefined reference t
o `coreneuron::_passive_reg()'
3069 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(nrn2core_data_init.cpp.o): in function `_INTERNAL_5
9__________spack_src_src_coreneuron_io_nrn2core_data_init_cpp_a5e6
93f3::coreneuron::nrn2core_patstim_share_info()':
>> 3070 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P204998/J1239
689/spack-build/spack-stage-neuron-git.b59524a62aca3460c37f6404b39
2a4ff39a588ac_develop-fiup6eoirqw4nugjbqwgxsl7xhd6ofcq/spack-build
-fiup6eo/src/coreneuron/../../../spack-src/src/coreneuron/io/nrn2c
ore_data_init.cpp:439:(.text+0x9f52): undefined reference to `core
neuron::pattern_stim_info_ref(int, int, double*, int*, coreneuron:
:ThreadDatum*, coreneuron::NrnThread*, coreneuron::Memb_list*, dou
ble)'
3071 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(nrn_checkpoint.cpp.o): in function `coreneuron::Che
ckPoints::initialize()':
>> 3072 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P206388/J1248
656/spack-build/spack-stage-neuron-git.fd9bb334d44d015a8c9ffa3ea60
e3874bc961f14_develop-fzwpwa4qrpwrsmce5ive4bg3b4mah2qn/spack-build
-fzwpwa4/src/coreneuron/../../../spack-src/src/coreneuron/io/nrn_c
heckpoint.cpp:619:(.text+0x8ce7): undefined reference to `coreneur
on::checkpoint_restore_patternstim(int, double, int, int, double*,
int*, coreneuron::ThreadDatum*, coreneuron::NrnThread*, coreneuro
n::Memb_list*, double)'
3073 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(nrn_checkpoint.cpp.o): in function `coreneuron::Che
ckPoints::write_tqueue(coreneuron::NrnThread&, coreneuron::FileHan
dler&) const':
>> 3074 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P206388/J1248
656/spack-build/spack-stage-neuron-git.fd9bb334d44d015a8c9ffa3ea60
e3874bc961f14_develop-fzwpwa4qrpwrsmce5ive4bg3b4mah2qn/spack-build
-fzwpwa4/src/coreneuron/../../../spack-src/src/coreneuron/io/nrn_c
heckpoint.cpp:831:(.text+0xba95): undefined reference to `coreneur
on::checkpoint_save_patternstim(int, int, double*, int*, coreneuro
n::ThreadDatum*, coreneuron::NrnThread*, coreneuron::Memb_list*, d
ouble)'
3075 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(patternstim.cpp.o): in function `coreneuron::nrn_se
t_extra_thread0_vdata()':
>> 3076 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P204998/J1239
689/spack-build/spack-stage-neuron-git.b59524a62aca3460c37f6404b39
2a4ff39a588ac_develop-fiup6eoirqw4nugjbqwgxsl7xhd6ofcq/spack-build
-fiup6eo/src/coreneuron/../../../spack-src/src/coreneuron/mechanis
m/patternstim.cpp:53:(.text+0x42ac): undefined reference to `coren
euron::_pattern_reg()'
3077 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(patternstim.cpp.o): in function `coreneuron::nrn_mk
PatternStim(char const*, double)':
>> 3078 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P204998/J1239
689/spack-build/spack-stage-neuron-git.b59524a62aca3460c37f6404b39
2a4ff39a588ac_develop-fiup6eoirqw4nugjbqwgxsl7xhd6ofcq/spack-build
-fiup6eo/src/coreneuron/../../../spack-src/src/coreneuron/mechanis
m/patternstim.cpp:97:(.text+0x44f9): undefined reference to `coren
euron::pattern_stim_setup_helper(int, double*, int*, int, int, dou
ble*, int*, coreneuron::ThreadDatum*, coreneuron::NrnThread*, core
neuron::Memb_list*, double)'
3079 pgacclnk: child process exit status 1: /gpfs/bbp.cscs.ch/ssd/apps/
bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/binutils
-2.41-vvcm5q/bin/ld
>> 3080 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e
7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6
rn/spack-build-ywdt3hw/share/coreneuron/nrnivmodl_core_makefile:15
0: x86_64/special-core] Error 2
3081 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6x
kq3wwswckeoud6rn/spack-build-ywdt3hw/bin'
>> 3082 make[2]: *** [src/coreneuron/CMakeFiles/nrniv-core.dir/build.make:
88: bin/x86_64/special-core] Error 2
3083 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6x
kq3wwswckeoud6rn/spack-build-ywdt3hw'
>> 3084 make[1]: *** [CMakeFiles/Makefile2:2343: src/coreneuron/CMakeFiles
/nrniv-core.dir/all] Error 2
3085 make[1]: *** Waiting for unfinished jobs....
3086 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ocbrowsr.cpp.o
3087 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302250/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-bu
ild-ywdt3hw/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wws
wckeoud6rn/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwc
ro2rxx6xkq3wwswckeoud6rn/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
250/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-build
-ywdt3hw -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/
spack-build-ywdt3hw/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcr
o2rxx6xkq3wwswckeoud6rn/spack-build-ywdt3hw/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-build-ywdt3hw/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud
6rn/spack-build-ywdt3hw/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2
rxx6xkq3wwswckeoud6rn/spack-build-ywdt3hw/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-build-ywdt3hw/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud
6rn/spack-build-ywdt3hw/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwsw
ckeoud6rn/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcr
o2rxx6xkq3wwswckeoud6rn/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3ww
swckeoud6rn/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeo
ud6rn/spack-build-ywdt3hw/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
ake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-yw
dt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/ivos -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/nrnpython/.
. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J
1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e
5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-s
rc/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3
wwswckeoud6rn/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/nrnpython/../i
voc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack
-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx
6xkq3wwswckeoud6rn/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-src/src/nrnpytho
n/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python
3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e
7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6
rn/spack-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-poi
nter --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,5
41,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_
lib.dir/__/ivoc/ocbrowsr.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivo
c/ocbrowsr.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/ocbrowsr.cp
p.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21414
2/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050
e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spac
k-src/src/ivoc/ocbrowsr.cpp
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voc/ocdeck.cpp.o
3089 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302250/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
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bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-
2.27.p1.hmpt-6rr256/lib -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline
-8.2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ap
plications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib:/gpfs
/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
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d/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/p
ython-3.11.6-bj4i6m/lib:::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ../../
lib/libnrngnu.a ../../lib/libsparse13.a /gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/read
line-8.2-pdugg7/lib/libreadline.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/
2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6
.4-6kdbhv/lib/libcurses.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbh
v/lib/libform.so -lpthread -lmpi -ldl /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.
11.6-bj4i6m/lib/libpython3.11.so -lnvcpumath
3557 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6x
kq3wwswckeoud6rn/spack-build-ywdt3hw'
3558 [ 39%] Built target nrniv_lib
3559 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6x
kq3wwswckeoud6rn/spack-build-ywdt3hw'
>> 3560 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302250/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-ywdt3hwcro2rxx6xkq3wwswckeoud6rn/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i4n2: task 0: Exited with exit code 1
section_end:1717164748:step_script section_start:1717164748:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=237390 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1302250 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=237428 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1302250 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=237470 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1302250 responseStatus=201 Created token=glcbt-64
section_end:1717164750:upload_artifacts_on_failure section_start:1717164750:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1717164751:cleanup_file_variables ERROR: Job failed: exit status 1

Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1717164071:resolve_secrets Resolving secrets
section_end:1717164071:resolve_secrets section_start:1717164071:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1475295843, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 214142, build ref , job ID 1302251
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1302251_PROD_P2160_CP3_C7
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2225932
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1302251_PROD_P2160_CP3_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --ntasks=2 --jobid=2225932 --cpus-per-task=8 --mem=160G
section_end:1717164074:prepare_executor section_start:1717164074:prepare_script Preparing environment
Using git from spack modules
Running on r1i4n12 via bbpv1.epfl.ch...
section_end:1717164080:prepare_script section_start:1717164080:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1717164081:get_sources section_start:1717164081:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=82616 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1717164089:restore_cache section_start:1717164089:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1302247)...
Runtime platform  arch=amd64 os=linux pid=83001 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1302247 responseStatus=200 OK token=glcbt-64
section_end:1717164092:download_artifacts section_start:1717164092:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142/J1302251_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/dvmlelhim7w6kad6xan52v3rcqu3z3jb
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2225932/ccache
Config file: /nvme/bbpcihpcproj12/2225932/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Fri May 31 16:01:36 2024
Local storage:
Cache size (GB): 0.50 / 0.51 (97.38%)
Files: 15595
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/dvmlelhim7w6kad6xan52v3rcqu3z3jb
Concretized
--------------------------------
- 3a7qz7c neuron@git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] dvmlelh ^nmodl@git.6426652bba919a208b785054e3fd12c42587bb68=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] tdpazhn ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] p4lv577 ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4r6gjx7 ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ou7zcb6 ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 5xwjejc ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-p4lv57
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-tdpazh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-5xwjej
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd12c42587bb68_develop-dvmlel
==> Installing neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop-3a7qz7cwsd56et5ukllizi55pequtew6 [50/50]
==> No binary for neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop-3a7qz7cwsd56et5ukllizi55pequtew6 found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
12 errors found in build log:
3040 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-bu
ild-3a7qz7c/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi
55pequtew6/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cw
sd56et5ukllizi55pequtew6/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build
-3a7qz7c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/
spack-build-3a7qz7c/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cws
d56et5ukllizi55pequtew6/spack-build-3a7qz7c/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-3a7qz7c/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequt
ew6/spack-build-3a7qz7c/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd5
6et5ukllizi55pequtew6/spack-build-3a7qz7c/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-3a7qz7c/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequt
ew6/spack-build-3a7qz7c/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi5
5pequtew6/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cws
d56et5ukllizi55pequtew6/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5uklliz
i55pequtew6/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55peq
utew6/spack-build-3a7qz7c/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
ake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a
7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/ivos -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnpython/.
. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J
1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e
5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-s
rc/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukll
izi55pequtew6/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnpython/../i
voc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack
-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et
5ukllizi55pequtew6/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnpytho
n/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python
3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e
7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequte
w6/spack-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-poi
nter --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,5
41,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_
lib.dir/__/ivoc/ivoc.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivoc/iv
oc.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o -c /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/iv
oc/ivoc.cpp
3041 [ 28%] Built target coreneuron-for-tests
3042 WARNING: No mod files found, compiling default ones only!
3043 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5u
kllizi55pequtew6/spack-build-3a7qz7c/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55peq
utew6/spack-build-3a7qz7c MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software
/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd
12c42587bb68_develop-dvmlel/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
3044 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-gi
t.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5
ukllizi55pequtew6/spack-build-3a7qz7c/bin'
3045 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3046 make[3]: xcrun: No such file or directory
3047 Default NMODL flags:
3048 mod_func.c.pl: No mod files provided[ 28%] Building CXX object src
/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o
3049 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-bu
ild-3a7qz7c/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi
55pequtew6/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cw
sd56et5ukllizi55pequtew6/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build
-3a7qz7c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/
spack-build-3a7qz7c/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cws
d56et5ukllizi55pequtew6/spack-build-3a7qz7c/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-3a7qz7c/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequt
ew6/spack-build-3a7qz7c/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd5
6et5ukllizi55pequtew6/spack-build-3a7qz7c/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-3a7qz7c/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequt
ew6/spack-build-3a7qz7c/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi5
5pequtew6/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cws
d56et5ukllizi55pequtew6/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5uklliz
i55pequtew6/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55peq
utew6/spack-build-3a7qz7c/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
ake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a
7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/ivos -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnpython/.
. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J
1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e
5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-s
rc/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukll
izi55pequtew6/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnpython/../i
voc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack
-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et
5ukllizi55pequtew6/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnpytho
n/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python
3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e
7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequte
w6/spack-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-poi
nter --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,5
41,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_
lib.dir/__/ivoc/ivocmain.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivo
c/ivocmain.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cp
p.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21414
2/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050
e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spac
k-src/src/ivoc/ivocmain.cpp
>> 3050 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3051 [ 28%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ivocrand.cpp.o
3052 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-bu
ild-3a7qz7c/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi
55pequtew6/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cw
sd56et5ukllizi55pequtew6/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build
-3a7qz7c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/
spack-build-3a7qz7c/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cws
d56et5ukllizi55pequtew6/spack-build-3a7qz7c/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-3a7qz7c/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequt
ew6/spack-build-3a7qz7c/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd5
6et5ukllizi55pequtew6/spack-build-3a7qz7c/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-3a7qz7c/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12
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/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
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spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
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. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J
1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e
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/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
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uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
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3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e
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2/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050
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k-src/src/ivoc/ivocrand.cpp
3053 [ 28%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ivocvect.cpp.o
3054 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
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cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
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k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
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als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python
3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e
7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequte
w6/spack-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-poi
nter --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,5
41,550,816,2465 -noswitcherror -O1 -MD -MT src/nrniv/CMakeFiles/nr
niv_lib.dir/__/ivoc/ivocvect.cpp.o -MF CMakeFiles/nrniv_lib.dir/__
/ivoc/ivocvect.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvec
t.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/
spack-src/src/ivoc/ivocvect.cpp
3055 [ 28%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/matrix.cpp.o
3056 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-bu
ild-3a7qz7c/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi
55pequtew6/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cw
sd56et5ukllizi55pequtew6/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build
-3a7qz7c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/
spack-build-3a7qz7c/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cws
d56et5ukllizi55pequtew6/spack-build-3a7qz7c/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-3a7qz7c/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequt
ew6/spack-build-3a7qz7c/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd5
6et5ukllizi55pequtew6/spack-build-3a7qz7c/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-3a7qz7c/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequt
ew6/spack-build-3a7qz7c/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi5
5pequtew6/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cws
d56et5ukllizi55pequtew6/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5uklliz
i55pequtew6/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55peq
utew6/spack-build-3a7qz7c/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
ake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a
7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/ivos -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnpython/.
. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J
1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e
5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-s
rc/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukll
izi55pequtew6/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnpython/../i
voc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack
-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et
5ukllizi55pequtew6/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnpytho
n/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python
3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e
7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequte
w6/spack-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-poi
nter --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,5
41,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_
lib.dir/__/ivoc/matrix.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivoc/
matrix.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/matrix.cpp.o -c
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J130
2251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e583
7b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/
src/ivoc/matrix.cpp
...
3067 [ 28%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/oc2iv.cpp.o
3068 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-bu
ild-3a7qz7c/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi
55pequtew6/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cw
sd56et5ukllizi55pequtew6/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build
-3a7qz7c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/
spack-build-3a7qz7c/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cws
d56et5ukllizi55pequtew6/spack-build-3a7qz7c/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-3a7qz7c/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequt
ew6/spack-build-3a7qz7c/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd5
6et5ukllizi55pequtew6/spack-build-3a7qz7c/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-3a7qz7c/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequt
ew6/spack-build-3a7qz7c/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack
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3069 [ 28%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
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ck section implies executable stack
3072 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
>> 3073 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.so: undefined reference to `coreneuron::_pattern_reg(
)'
>> 3074 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.so: undefined reference to `coreneuron::pattern_stim_
info_ref(int, int, double*, int*, coreneuron::ThreadDatum*, corene
uron::NrnThread*, coreneuron::Memb_list*, double)'
>> 3075 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.so: undefined reference to `coreneuron::checkpoint_sa
ve_patternstim(int, int, double*, int*, coreneuron::ThreadDatum*,
coreneuron::NrnThread*, coreneuron::Memb_list*, double)'
>> 3076 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.so: undefined reference to `coreneuron::_passive_reg(
)'
>> 3077 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.so: undefined reference to `coreneuron::checkpoint_re
store_patternstim(int, double, int, int, double*, int*, coreneuron
::ThreadDatum*, coreneuron::NrnThread*, coreneuron::Memb_list*, do
uble)'
>> 3078 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.so: undefined reference to `coreneuron::pattern_stim_
setup_helper(int, double*, int*, int, int, double*, int*, coreneur
on::ThreadDatum*, coreneuron::NrnThread*, coreneuron::Memb_list*,
double)'
3079 pgacclnk: child process exit status 1: /gpfs/bbp.cscs.ch/ssd/apps/
bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/binutils
-2.41-vvcm5q/bin/ld
>> 3080 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e
7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequte
w6/spack-build-3a7qz7c/share/coreneuron/nrnivmodl_core_makefile:15
0: x86_64/special-core] Error 2
3081 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5u
kllizi55pequtew6/spack-build-3a7qz7c/bin'
>> 3082 make[2]: *** [src/coreneuron/CMakeFiles/nrniv-core.dir/build.make:
88: bin/x86_64/special-core] Error 2
3083 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5u
kllizi55pequtew6/spack-build-3a7qz7c'
>> 3084 make[1]: *** [CMakeFiles/Makefile2:2355: src/coreneuron/CMakeFiles
/nrniv-core.dir/all] Error 2
3085 make[1]: *** Waiting for unfinished jobs....
3086 [ 29%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ocbrowsr.cpp.o
3087 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-bu
ild-3a7qz7c/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi
55pequtew6/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cw
sd56et5ukllizi55pequtew6/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build
-3a7qz7c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/
spack-build-3a7qz7c/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cws
d56et5ukllizi55pequtew6/spack-build-3a7qz7c/src/nrnoc -I/gpfs/bbp.
cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-
build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b
0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-3a7qz7c/s
rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequt
ew6/spack-build-3a7qz7c/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_
jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuro
n-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd5
6et5ukllizi55pequtew6/spack-build-3a7qz7c/src/parallel -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack
-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47
b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-3a7qz7c/
src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequt
ew6/spack-build-3a7qz7c/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spac
k-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develo
p-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/gnu -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrn
mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack
-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi5
5pequtew6/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cws
d56et5ukllizi55pequtew6/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/sparse -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/s
pack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b9581
8e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/sp
arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214
142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e77930
50e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/sp
ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci
hpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f
7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5uklliz
i55pequtew6/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-
stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-
3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/sundials/ida -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/
spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b958
18e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/s
undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55peq
utew6/spack-build-3a7qz7c/src/nrniv/oc_generated -I/gpfs/bbp.cscs.
ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl
ake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a
7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/ivos -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnpython/.
. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J
1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e
5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-s
rc/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukll
izi55pequtew6/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/s
pack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_dev
elop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnpython/../i
voc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack
-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et
5ukllizi55pequtew6/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnpytho
n/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_extern
als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python
3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e
7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequte
w6/spack-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-poi
nter --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,5
41,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_
lib.dir/__/ivoc/ocbrowsr.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivo
c/ocbrowsr.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/ocbrowsr.cp
p.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21414
2/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050
e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spac
k-src/src/ivoc/ocbrowsr.cpp
3088 [ 29%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ocdeck.cpp.o
3089 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-bu
ild-3a7qz7c/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS
EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6
/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi
55pequtew6/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cw
sd56et5ukllizi55pequtew6/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/nrnoc -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spac
k-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e4
7b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-src/src/oc -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build
-3a7qz7c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/
spack-build-3a7qz7c/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cws
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bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-
2.27.p1.hmpt-6rr256/lib -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline
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plications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib:/gpfs
/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
2.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib:/gpfs/bbp.cscs.ch/ss
d/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/p
ython-3.11.6-bj4i6m/lib:::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ../../
lib/libnrngnu.a ../../lib/libsparse13.a /gpfs/bbp.cscs.ch/ssd/apps
/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/read
line-8.2-pdugg7/lib/libreadline.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/
2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6
.4-6kdbhv/lib/libcurses.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-
01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbh
v/lib/libform.so -lpthread -lmpi -ldl /gpfs/bbp.cscs.ch/ssd/apps/b
sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.
11.6-bj4i6m/lib/libpython3.11.so -lnvcpumath
3557 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5u
kllizi55pequtew6/spack-build-3a7qz7c'
3558 [ 37%] Built target nrniv_lib
3559 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5u
kllizi55pequtew6/spack-build-3a7qz7c'
>> 3560 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302251/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-3a7qz7cwsd56et5ukllizi55pequtew6/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i4n12: task 0: Exited with exit code 1
section_end:1717165229:step_script section_start:1717165229:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=99162 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1302251 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=99200 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1302251 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=99239 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1302251 responseStatus=201 Created token=glcbt-64
section_end:1717165231:upload_artifacts_on_failure section_start:1717165231:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1717165232:cleanup_file_variables ERROR: Job failed: exit status 1

Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1717164072:resolve_secrets Resolving secrets
section_end:1717164072:resolve_secrets section_start:1717164072:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2849741796, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 214142, build ref , job ID 1302252
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1302252_PROD_P2160_CP4_C8
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2225933
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1302252_PROD_P2160_CP4_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --ntasks=2 --jobid=2225933 --cpus-per-task=8 --mem=160G
section_end:1717164075:prepare_executor section_start:1717164075:prepare_script Preparing environment
Using git from spack modules
Running on r1i4n12 via bbpv1.epfl.ch...
section_end:1717164080:prepare_script section_start:1717164080:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1717164081:get_sources section_start:1717164081:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=82578 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1717164088:restore_cache section_start:1717164088:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1302247)...
Runtime platform  arch=amd64 os=linux pid=82733 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1302247 responseStatus=200 OK token=glcbt-64
section_end:1717164090:download_artifacts section_start:1717164090:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142/J1302252_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/dvmlelhim7w6kad6xan52v3rcqu3z3jb
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2225933/ccache
Config file: /nvme/bbpcihpcproj12/2225933/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Fri May 31 16:01:35 2024
Local storage:
Cache size (GB): 0.47 / 0.51 (92.47%)
Files: 16623
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/dvmlelhim7w6kad6xan52v3rcqu3z3jb
- ^caliper+cuda cuda_arch=70
Concretized
--------------------------------
- vwpg77t neuron@git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
- vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] dvmlelh ^nmodl@git.6426652bba919a208b785054e3fd12c42587bb68=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] tdpazhn ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] p4lv577 ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4r6gjx7 ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ou7zcb6 ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 5xwjejc ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-p4lv57
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-tdpazh
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd12c42587bb68_develop-dvmlel
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-5xwjej
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
==> Installing neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop-vwpg77t6jwi527usspbablhll4pp5euf [55/55]
==> No binary for neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop-vwpg77t6jwi527usspbablhll4pp5euf found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
12 errors found in build log:
3034 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/hocmark.cpp.o
3035 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-bu
ild-vwpg77t/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vw
pg77t6jwi527usspbablhll4pp5euf/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbabl
hll4pp5euf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527
usspbablhll4pp5euf/spack-build-vwpg77t -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwp
g77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-
vwpg77t/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhl
l4pp5euf/spack-build-vwpg77t/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252
/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95
818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vw
pg77t/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablh
ll4pp5euf/spack-build-vwpg77t/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
4142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793
050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5
euf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264
f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspba
blhll4pp5euf/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6
jwi527usspbablhll4pp5euf/spack-src/src/nrnpython -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/parallel -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/sr
c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5eu
f/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspb
ablhll4pp5euf/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg7
7t6jwi527usspbablhll4pp5euf/spack-src/src/sundials -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-bui
ld/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8
_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/sundials/c
vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2141
42/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779305
0e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spa
ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.2
64f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527ussp
bablhll4pp5euf/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrniv/
oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl
ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack
-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e1
2e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp
5euf/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jw
i527usspbablhll4pp5euf/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5eu
f/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6
jwi527usspbablhll4pp5euf/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc7
8e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll
4pp5euf/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/sp
ack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_deve
lop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/external/eigen -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp.o -M
F CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp.o.d -o CMakeFiles/n
rniv_lib.dir/__/ivoc/hocmark.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-
neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77
t6jwi527usspbablhll4pp5euf/spack-src/src/ivoc/hocmark.cpp
3036 WARNING: No mod files found, compiling default ones only!
3037 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527us
spbablhll4pp5euf/spack-build-vwpg77t/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4p
p5euf/spack-build-vwpg77t MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software
/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd
12c42587bb68_develop-dvmlel/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
3038 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-gi
t.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527u
sspbablhll4pp5euf/spack-build-vwpg77t/bin'
3039 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3040 make[3]: xcrun: No such file or directory
3041 Default NMODL flags:
>> 3042 mod_func.c.pl: No mod files provideddiff: x86_64/corenrn/mod2c/_mo
d_func.cpp: No such file or directory
3043 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/htlist.cpp.o
3044 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-bu
ild-vwpg77t/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vw
pg77t6jwi527usspbablhll4pp5euf/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbabl
hll4pp5euf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527
usspbablhll4pp5euf/spack-build-vwpg77t -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwp
g77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-
vwpg77t/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhl
l4pp5euf/spack-build-vwpg77t/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252
/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95
818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vw
pg77t/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablh
ll4pp5euf/spack-build-vwpg77t/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
4142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793
050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5
euf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264
f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspba
blhll4pp5euf/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6
jwi527usspbablhll4pp5euf/spack-src/src/nrnpython -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/parallel -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/sr
c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5eu
f/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspb
ablhll4pp5euf/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg7
7t6jwi527usspbablhll4pp5euf/spack-src/src/sundials -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-bui
ld/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8
_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/sundials/c
vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2141
42/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779305
0e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spa
ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.2
64f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527ussp
bablhll4pp5euf/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrniv/
oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl
ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack
-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e1
2e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp
5euf/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jw
i527usspbablhll4pp5euf/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5eu
f/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6
jwi527usspbablhll4pp5euf/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc7
8e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll
4pp5euf/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/sp
ack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_deve
lop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/external/eigen -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o -MF
CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o.d -o CMakeFiles/nrn
iv_lib.dir/__/ivoc/htlist.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6j
wi527usspbablhll4pp5euf/spack-src/src/ivoc/htlist.cpp
3045 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/idraw.cpp.o
3046 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-bu
ild-vwpg77t/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vw
pg77t6jwi527usspbablhll4pp5euf/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbabl
hll4pp5euf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527
usspbablhll4pp5euf/spack-build-vwpg77t -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwp
g77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-
vwpg77t/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhl
l4pp5euf/spack-build-vwpg77t/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252
/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95
818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vw
pg77t/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablh
ll4pp5euf/spack-build-vwpg77t/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
4142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793
050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5
euf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264
f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspba
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ib.dir/__/ivoc/ivoc.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-gi
t.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527u
sspbablhll4pp5euf/spack-src/src/ivoc/ivoc.cpp
...
3061 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/mymath.cpp.o
3062 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-bu
ild-vwpg77t/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vw
pg77t6jwi527usspbablhll4pp5euf/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbabl
hll4pp5euf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527
usspbablhll4pp5euf/spack-build-vwpg77t -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwp
g77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-
vwpg77t/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhl
l4pp5euf/spack-build-vwpg77t/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252
/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95
818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vw
pg77t/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablh
ll4pp5euf/spack-build-vwpg77t/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
4142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793
050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5
euf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264
f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspba
blhll4pp5euf/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6
jwi527usspbablhll4pp5euf/spack-src/src/nrnpython -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/parallel -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/sr
c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5eu
f/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspb
ablhll4pp5euf/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg7
7t6jwi527usspbablhll4pp5euf/spack-src/src/sundials -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-bui
ld/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8
_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/sundials/c
vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2141
42/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779305
0e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spa
ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.2
64f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527ussp
bablhll4pp5euf/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrniv/
oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl
ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack
-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e1
2e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp
5euf/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jw
i527usspbablhll4pp5euf/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5eu
f/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6
jwi527usspbablhll4pp5euf/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc7
8e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll
4pp5euf/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/sp
ack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_deve
lop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/external/eigen -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/mymath.cpp.o -MF
CMakeFiles/nrniv_lib.dir/__/ivoc/mymath.cpp.o.d -o CMakeFiles/nrn
iv_lib.dir/__/ivoc/mymath.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6j
wi527usspbablhll4pp5euf/spack-src/src/ivoc/mymath.cpp
3063 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/objcmd.cpp.o
3064 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-bu
ild-vwpg77t/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vw
pg77t6jwi527usspbablhll4pp5euf/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbabl
hll4pp5euf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527
usspbablhll4pp5euf/spack-build-vwpg77t -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwp
g77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-
vwpg77t/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhl
l4pp5euf/spack-build-vwpg77t/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252
/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95
818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vw
pg77t/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablh
ll4pp5euf/spack-build-vwpg77t/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
4142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793
050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5
euf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264
f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspba
blhll4pp5euf/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6
jwi527usspbablhll4pp5euf/spack-src/src/nrnpython -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/parallel -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/sr
c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5eu
f/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspb
ablhll4pp5euf/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg7
7t6jwi527usspbablhll4pp5euf/spack-src/src/sundials -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-bui
ld/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8
_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/sundials/c
vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2141
42/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779305
0e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spa
ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.2
64f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527ussp
bablhll4pp5euf/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrniv/
oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl
ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack
-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e1
2e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp
5euf/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jw
i527usspbablhll4pp5euf/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5eu
f/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6
jwi527usspbablhll4pp5euf/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc7
8e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll
4pp5euf/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/sp
ack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_deve
lop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/external/eigen -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/objcmd.cpp.o -MF
CMakeFiles/nrniv_lib.dir/__/ivoc/objcmd.cpp.o.d -o CMakeFiles/nrn
iv_lib.dir/__/ivoc/objcmd.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6j
wi527usspbablhll4pp5euf/spack-src/src/ivoc/objcmd.cpp
3065 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2225933/pgcudafatl9GxHeEMHnQ7.o: missing .note.GNU-sta
ck section implies executable stack
3066 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
>> 3067 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(mk_mech.cpp.o):(.data+0xd28): undefined reference t
o `coreneuron::_passive_reg()'
3068 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(nrn2core_data_init.cpp.o): in function `_INTERNAL_5
9__________spack_src_src_coreneuron_io_nrn2core_data_init_cpp_a5e6
93f3::coreneuron::nrn2core_patstim_share_info()':
>> 3069 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P211284/J1282
277/spack-build/spack-stage-neuron-git.c6ee25efbe525996f222b24d48c
168e0a1eafecc_develop-6er6s6tgxcjx3clhixsiimpusuyjfyzq/spack-build
-6er6s6t/src/coreneuron/../../../spack-src/src/coreneuron/io/nrn2c
ore_data_init.cpp:439:(.text+0xa4d1): undefined reference to `core
neuron::pattern_stim_info_ref(int, int, double*, int*, coreneuron:
:ThreadDatum*, coreneuron::NrnThread*, coreneuron::Memb_list*, dou
ble)'
3070 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(nrn_checkpoint.cpp.o): in function `coreneuron::Che
ckPoints::initialize()':
>> 3071 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P206388/J1248
658/spack-build/spack-stage-neuron-git.fd9bb334d44d015a8c9ffa3ea60
e3874bc961f14_develop-y7hh75wumbfcrpfoqmnwtamrrgsjpcu3/spack-build
-y7hh75w/src/coreneuron/../../../spack-src/src/coreneuron/io/nrn_c
heckpoint.cpp:619:(.text+0x9224): undefined reference to `coreneur
on::checkpoint_restore_patternstim(int, double, int, int, double*,
int*, coreneuron::ThreadDatum*, coreneuron::NrnThread*, coreneuro
n::Memb_list*, double)'
3072 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(nrn_checkpoint.cpp.o): in function `coreneuron::Che
ckPoints::write_tqueue(coreneuron::NrnThread&, coreneuron::FileHan
dler&) const':
>> 3073 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P206388/J1248
658/spack-build/spack-stage-neuron-git.fd9bb334d44d015a8c9ffa3ea60
e3874bc961f14_develop-y7hh75wumbfcrpfoqmnwtamrrgsjpcu3/spack-build
-y7hh75w/src/coreneuron/../../../spack-src/src/coreneuron/io/nrn_c
heckpoint.cpp:831:(.text+0xbf95): undefined reference to `coreneur
on::checkpoint_save_patternstim(int, int, double*, int*, coreneuro
n::ThreadDatum*, coreneuron::NrnThread*, coreneuron::Memb_list*, d
ouble)'
3074 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(patternstim.cpp.o): in function `coreneuron::nrn_se
t_extra_thread0_vdata()':
>> 3075 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P204998/J1239
691/spack-build/spack-stage-neuron-git.b59524a62aca3460c37f6404b39
2a4ff39a588ac_develop-tvgtn3j3tal5kqm74ymroqgz2wp7ff3o/spack-build
-tvgtn3j/src/coreneuron/../../../spack-src/src/coreneuron/mechanis
m/patternstim.cpp:53:(.text+0x47ec): undefined reference to `coren
euron::_pattern_reg()'
3076 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(patternstim.cpp.o): in function `coreneuron::nrn_mk
PatternStim(char const*, double)':
>> 3077 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P204998/J1239
691/spack-build/spack-stage-neuron-git.b59524a62aca3460c37f6404b39
2a4ff39a588ac_develop-tvgtn3j3tal5kqm74ymroqgz2wp7ff3o/spack-build
-tvgtn3j/src/coreneuron/../../../spack-src/src/coreneuron/mechanis
m/patternstim.cpp:97:(.text+0x4a39): undefined reference to `coren
euron::pattern_stim_setup_helper(int, double*, int*, int, int, dou
ble*, int*, coreneuron::ThreadDatum*, coreneuron::NrnThread*, core
neuron::Memb_list*, double)'
3078 pgacclnk: child process exit status 1: /gpfs/bbp.cscs.ch/ssd/apps/
bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/binutils
-2.41-vvcm5q/bin/ld
>> 3079 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e
7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5e
uf/spack-build-vwpg77t/share/coreneuron/nrnivmodl_core_makefile:15
0: x86_64/special-core] Error 2
3080 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527us
spbablhll4pp5euf/spack-build-vwpg77t/bin'
>> 3081 make[2]: *** [src/coreneuron/CMakeFiles/nrniv-core.dir/build.make:
88: bin/x86_64/special-core] Error 2
3082 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527us
spbablhll4pp5euf/spack-build-vwpg77t'
>> 3083 make[1]: *** [CMakeFiles/Makefile2:2343: src/coreneuron/CMakeFiles
/nrniv-core.dir/all] Error 2
3084 make[1]: *** Waiting for unfinished jobs....
3085 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/oc2iv.cpp.o
3086 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-bu
ild-vwpg77t/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vw
pg77t6jwi527usspbablhll4pp5euf/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbabl
hll4pp5euf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527
usspbablhll4pp5euf/spack-build-vwpg77t -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwp
g77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-
vwpg77t/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhl
l4pp5euf/spack-build-vwpg77t/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252
/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95
818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vw
pg77t/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablh
ll4pp5euf/spack-build-vwpg77t/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
4142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793
050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5
euf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264
f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspba
blhll4pp5euf/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6
jwi527usspbablhll4pp5euf/spack-src/src/nrnpython -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/parallel -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/sr
c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5eu
f/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspb
ablhll4pp5euf/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg7
7t6jwi527usspbablhll4pp5euf/spack-src/src/sundials -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-bui
ld/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8
_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/sundials/c
vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2141
42/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779305
0e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spa
ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.2
64f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527ussp
bablhll4pp5euf/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrniv/
oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl
ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack
-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e1
2e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp
5euf/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jw
i527usspbablhll4pp5euf/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5eu
f/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6
jwi527usspbablhll4pp5euf/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc7
8e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll
4pp5euf/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/sp
ack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_deve
lop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/external/eigen -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/oc2iv.cpp.o -MF
CMakeFiles/nrniv_lib.dir/__/ivoc/oc2iv.cpp.o.d -o CMakeFiles/nrniv
_lib.dir/__/ivoc/oc2iv.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron
-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi5
27usspbablhll4pp5euf/spack-src/src/ivoc/oc2iv.cpp
3087 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ocbox.cpp.o
3088 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-bu
ild-vwpg77t/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vw
pg77t6jwi527usspbablhll4pp5euf/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbabl
hll4pp5euf/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527
usspbablhll4pp5euf/spack-build-vwpg77t -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwp
g77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-
vwpg77t/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhl
l4pp5euf/spack-build-vwpg77t/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252
/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95
818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vw
pg77t/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablh
ll4pp5euf/spack-build-vwpg77t/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
4142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793
050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5
euf/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264
f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspba
blhll4pp5euf/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6
jwi527usspbablhll4pp5euf/spack-src/src/nrnpython -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/parallel -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
52/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/sr
c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5eu
f/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspb
ablhll4pp5euf/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage
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7t6jwi527usspbablhll4pp5euf/spack-src/src/sundials -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-bui
ld/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8
_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/sundials/c
vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2141
42/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e779305
0e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spa
ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.2
64f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527ussp
bablhll4pp5euf/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-vwpg77t/src/nrniv/
oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl
ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack
-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e1
2e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp
5euf/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jw
i527usspbablhll4pp5euf/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5eu
f/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6
jwi527usspbablhll4pp5euf/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc7
8e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll
4pp5euf/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/sp
ack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_deve
lop-vwpg77t6jwi527usspbablhll4pp5euf/spack-src/external/eigen -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocbox.cpp.o -MF
CMakeFiles/nrniv_lib.dir/__/ivoc/ocbox.cpp.o.d -o CMakeFiles/nrniv
_lib.dir/__/ivoc/ocbox.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron
-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi5
27usspbablhll4pp5euf/spack-src/src/ivoc/ocbox.cpp
3089 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ocbrowsr.cpp.o
...
3557 [ 39%] Linking CXX shared library ../../lib/libnrniv.so
3558 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-bu
ild-vwpg77t/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
n/cmake -E cmake_link_script CMakeFiles/nrniv_lib.dir/link.txt --v
erbose=1
3559 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
245/spack/lib/spack/env/nvhpc/nvc++ -fPIC -tp haswell -g -O1 -fno-
omit-frame-pointer -noswitcherror -shared -Wl,-soname,libnrniv.so
-o ../../lib/libnrniv.so CMakeFiles/nrniv_lib.dir/__/ivoc/apwindo
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nrnpython.dir/rxd_llgramarea.cpp.o -L/gpfs/bbp.cscs.ch/ssd/apps/
bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-
2.27.p1.hmpt-6rr256/lib -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/apps/bsd
/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline
-8.2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ap
plications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib:/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/i
nstall_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64:/gpfs/bbp.cs
cs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-s
kylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib:/gpfs/bbp.cscs.ch/ssd/apps/
bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3
.11.6-bj4i6m/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq/lib:::::
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::: ../../lib/libnrngnu.a ../../lib/li
bsparse13.a /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applic
ations/install_gcc-12.3.0-skylake/readline-8.2-pdugg7/lib/libreadl
ine.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_application
s/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libcurses.so /
gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/instal
l_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libform.so /gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install
_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64/libcaliper.so.2.11
.0 -lpthread -lmpi -ldl /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/li
b/libpython3.11.so -ldl -lpthread -lmpi -lnvcpumath -Wl,-rpath-lin
k,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/ins
tall_gcc-12.3.0-skylake/adiak-0.4.0-hficqq/lib
3560 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527us
spbablhll4pp5euf/spack-build-vwpg77t'
3561 [ 39%] Built target nrniv_lib
3562 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527us
spbablhll4pp5euf/spack-build-vwpg77t'
>> 3563 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302252/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-vwpg77t6jwi527usspbablhll4pp5euf/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i4n12: task 0: Exited with exit code 1
section_end:1717165354:step_script section_start:1717165354:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=100375 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1302252 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=100418 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1302252 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=100458 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1302252 responseStatus=201 Created token=glcbt-64
section_end:1717165356:upload_artifacts_on_failure section_start:1717165356:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1717165358:cleanup_file_variables ERROR: Job failed: exit status 1

Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1717164072:resolve_secrets Resolving secrets
section_end:1717164072:resolve_secrets section_start:1717164072:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3800686232, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 214142, build ref , job ID 1302253
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1302253_PROD_P2160_CP5_C10
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2225934
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1302253_PROD_P2160_CP5_C10 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --ntasks=2 --jobid=2225934 --cpus-per-task=8 --mem=160G
section_end:1717164074:prepare_executor section_start:1717164074:prepare_script Preparing environment
Using git from spack modules
Running on r1i7n10 via bbpv1.epfl.ch...
section_end:1717164077:prepare_script section_start:1717164077:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1717164078:get_sources section_start:1717164078:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=202476 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1717164084:restore_cache section_start:1717164084:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1302247)...
Runtime platform  arch=amd64 os=linux pid=202580 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1302247 responseStatus=200 OK token=glcbt-64
section_end:1717164086:download_artifacts section_start:1717164086:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142/J1302253_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/dvmlelhim7w6kad6xan52v3rcqu3z3jb
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2225934/ccache
Config file: /nvme/bbpcihpcproj12/2225934/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Fri May 31 16:01:31 2024
Local storage:
Cache size (GB): 0.48 / 0.51 (94.27%)
Files: 16083
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/dvmlelhim7w6kad6xan52v3rcqu3z3jb
- ^caliper+cuda cuda_arch=70
Concretized
--------------------------------
- jorfkk3 neuron@git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
- vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] dvmlelh ^nmodl@git.6426652bba919a208b785054e3fd12c42587bb68=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] tdpazhn ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] p4lv577 ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4r6gjx7 ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ou7zcb6 ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 5xwjejc ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-p4lv57
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-tdpazh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-5xwjej
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd12c42587bb68_develop-dvmlel
==> Installing caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 [54/55]
==> No binary for caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 found: installing from source
==> Fetching https://github.com/LLNL/Caliper/archive/v2.11.0.tar.gz
==> No patches needed for caliper
==> caliper: Executing phase: 'cmake'
==> caliper: Executing phase: 'build'
==> caliper: Executing phase: 'install'
==> caliper: Successfully installed caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2
Stage: 2.57s. Cmake: 9.63s. Build: 7.85s. Install: 1.08s. Post-install: 0.18s. Total: 21.62s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
==> Installing neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm [55/55]
==> No binary for neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8=develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
12 errors found in build log:
3030 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-gi
t.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6we
qwmmgnj5i45e26kxm/spack-build-jorfkk3'
3031 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-bu
ild-jorfkk3 && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E
cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron
-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h
6weqwmmgnj5i45e26kxm/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-
git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6
weqwmmgnj5i45e26kxm/spack-src/src/coreneuron /gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3 /gpfs/bbp.cs
cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-bu
ild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d
8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src
/coreneuron /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e77
93050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm
/spack-build-jorfkk3/src/coreneuron/CMakeFiles/coreneuron-for-test
s.dir/DependInfo.cmake "--color="
3032 WARNING: No mod files found, compiling default ones only!
3033 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weq
wmmgnj5i45e26kxm/spack-build-jorfkk3/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e
12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e
26kxm/spack-build-jorfkk3 MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software
/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd
12c42587bb68_develop-dvmlel/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
3034 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-gi
t.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6we
qwmmgnj5i45e26kxm/spack-build-jorfkk3/bin'
3035 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 3036 make[3]: xcrun: No such file or directory
3037 Default NMODL flags:
3038 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weq
wmmgnj5i45e26kxm/spack-build-jorfkk3'
3039 make -f src/coreneuron/CMakeFiles/coreneuron-for-tests.dir/build.
make src/coreneuron/CMakeFiles/coreneuron-for-tests.dir/build
3040 mod_func.c.pl: No mod files providedmake[2]: Entering directory '/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
53/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-
jorfkk3'
3041 make[2]: Nothing to be done for 'src/coreneuron/CMakeFiles/coreneu
ron-for-tests.dir/build'.
3042 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weq
wmmgnj5i45e26kxm/spack-build-jorfkk3'
>> 3043 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
3044 [ 30%] Built target coreneuron-for-tests
3045 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/idraw.cpp.o
3046 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-bu
ild-jorfkk3/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jo
rfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj
5i45e26kxm/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6w
eqwmmgnj5i45e26kxm/spack-build-jorfkk3 -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jor
fkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
53/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-
jorfkk3/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i
45e26kxm/spack-build-jorfkk3/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253
/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95
818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jo
rfkk3/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5
i45e26kxm/spack-build-jorfkk3/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
4142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793
050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26
kxm/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264
f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmg
nj5i45e26kxm/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3u
oi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpython -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/parallel -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
53/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/sr
c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kx
m/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmm
gnj5i45e26kxm/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfk
k3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/sundials -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-bui
ld/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8
_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/sundials/c
vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2141
42/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e779305
0e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spa
ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.2
64f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwm
mgnj5i45e26kxm/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/nrniv/
oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl
ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack
-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e1
2e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e2
6kxm/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi
6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kx
m/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3u
oi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc7
8e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i4
5e26kxm/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/sp
ack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_deve
lop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/external/eigen -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/idraw.cpp.o -MF
CMakeFiles/nrniv_lib.dir/__/ivoc/idraw.cpp.o.d -o CMakeFiles/nrniv
_lib.dir/__/ivoc/idraw.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron
-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h
6weqwmmgnj5i45e26kxm/spack-src/src/ivoc/idraw.cpp
3047 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ivoc.cpp.o
3048 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-bu
ild-jorfkk3/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jo
rfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj
5i45e26kxm/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6w
eqwmmgnj5i45e26kxm/spack-build-jorfkk3 -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jor
fkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
53/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-
jorfkk3/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i
45e26kxm/spack-build-jorfkk3/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253
/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95
818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jo
rfkk3/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
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ap_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3u
oi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc7
8e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i4
5e26kxm/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/sp
ack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_deve
lop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/external/eigen -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocbox.cpp.o -MF
CMakeFiles/nrniv_lib.dir/__/ivoc/ocbox.cpp.o.d -o CMakeFiles/nrniv
_lib.dir/__/ivoc/ocbox.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron
-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h
6weqwmmgnj5i45e26kxm/spack-src/src/ivoc/ocbox.cpp
3069 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ocbrowsr.cpp.o
3070 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-bu
ild-jorfkk3/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jo
rfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj
5i45e26kxm/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6w
eqwmmgnj5i45e26kxm/spack-build-jorfkk3 -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jor
fkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
53/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-
jorfkk3/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i
45e26kxm/spack-build-jorfkk3/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253
/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95
818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jo
rfkk3/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5
i45e26kxm/spack-build-jorfkk3/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
4142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793
050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26
kxm/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264
f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmg
nj5i45e26kxm/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3u
oi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpython -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/parallel -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
53/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/sr
c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kx
m/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmm
gnj5i45e26kxm/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfk
k3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/sundials -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-bui
ld/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8
_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/sundials/c
vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2141
42/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e779305
0e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spa
ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.2
64f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwm
mgnj5i45e26kxm/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/nrniv/
oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl
ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack
-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e1
2e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e2
6kxm/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi
6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kx
m/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3u
oi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc7
8e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i4
5e26kxm/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/sp
ack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_deve
lop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/external/eigen -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocbrowsr.cpp.o -
MF CMakeFiles/nrniv_lib.dir/__/ivoc/ocbrowsr.cpp.o.d -o CMakeFiles
/nrniv_lib.dir/__/ivoc/ocbrowsr.cpp.o -c /gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jor
fkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/ivoc/ocbrowsr.cpp
3071 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp
cihpcproj12/2225934/pgcudafat4JxZOG-s6H_c.o: missing .note.GNU-sta
ck section implies executable stack
3072 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio
ur is deprecated and will be removed in a future version of the li
nker
>> 3073 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(mk_mech.cpp.o):(.data+0xd28): undefined reference t
o `coreneuron::_passive_reg()'
3074 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(nrn2core_data_init.cpp.o): in function `_INTERNAL_5
9__________spack_src_src_coreneuron_io_nrn2core_data_init_cpp_a5e6
93f3::coreneuron::nrn2core_patstim_share_info()':
>> 3075 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P211284/J1282
278/spack-build/spack-stage-neuron-git.c6ee25efbe525996f222b24d48c
168e0a1eafecc_develop-v4smafdppj6oina7ahbcb7kcrm6yklgd/spack-build
-v4smafd/src/coreneuron/../../../spack-src/src/coreneuron/io/nrn2c
ore_data_init.cpp:439:(.text+0xa4d1): undefined reference to `core
neuron::pattern_stim_info_ref(int, int, double*, int*, coreneuron:
:ThreadDatum*, coreneuron::NrnThread*, coreneuron::Memb_list*, dou
ble)'
3076 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(nrn_checkpoint.cpp.o): in function `coreneuron::Che
ckPoints::initialize()':
>> 3077 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P206388/J1248
659/spack-build/spack-stage-neuron-git.fd9bb334d44d015a8c9ffa3ea60
e3874bc961f14_develop-5jpdzqxicnssnpmxidojylobmvtnzg6p/spack-build
-5jpdzqx/src/coreneuron/../../../spack-src/src/coreneuron/io/nrn_c
heckpoint.cpp:619:(.text+0x9224): undefined reference to `coreneur
on::checkpoint_restore_patternstim(int, double, int, int, double*,
int*, coreneuron::ThreadDatum*, coreneuron::NrnThread*, coreneuro
n::Memb_list*, double)'
3078 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(nrn_checkpoint.cpp.o): in function `coreneuron::Che
ckPoints::write_tqueue(coreneuron::NrnThread&, coreneuron::FileHan
dler&) const':
>> 3079 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P206388/J1248
659/spack-build/spack-stage-neuron-git.fd9bb334d44d015a8c9ffa3ea60
e3874bc961f14_develop-5jpdzqxicnssnpmxidojylobmvtnzg6p/spack-build
-5jpdzqx/src/coreneuron/../../../spack-src/src/coreneuron/io/nrn_c
heckpoint.cpp:831:(.text+0xbf95): undefined reference to `coreneur
on::checkpoint_save_patternstim(int, int, double*, int*, coreneuro
n::ThreadDatum*, coreneuron::NrnThread*, coreneuron::Memb_list*, d
ouble)'
3080 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ocdeck.cpp.o
3081 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-bu
ild-jorfkk3/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jo
rfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj
5i45e26kxm/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6w
eqwmmgnj5i45e26kxm/spack-build-jorfkk3 -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jor
fkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
53/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-
jorfkk3/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i
45e26kxm/spack-build-jorfkk3/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253
/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95
818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jo
rfkk3/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5
i45e26kxm/spack-build-jorfkk3/src/sundials -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/sundials
/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21
4142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793
050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/s
pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12
e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26
kxm/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264
f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmg
nj5i45e26kxm/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3u
oi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpython -I/gpfs/bbp.cscs.
ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build
/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_d
evelop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/parallel -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
53/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/sr
c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kx
m/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.26
4f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmm
gnj5i45e26kxm/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage
-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfk
k3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/sundials -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-bui
ld/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8
_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/sundials/c
vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2141
42/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e779305
0e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spa
ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb
pcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.2
64f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwm
mgnj5i45e26kxm/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spa
ck-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_devel
op-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/nrniv/
oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext
ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl
ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e
3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack
-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e1
2e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e2
6kxm/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neur
on-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi
6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-b
uild/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0
d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpytho
n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7
793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kx
m/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-ne
uron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3u
oi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrnpython/../nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/sp
ack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818
e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrn
python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc7
8e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i4
5e26kxm/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap
ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho
n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0
-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/sp
ack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_deve
lop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/external/eigen -tp
haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr
ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -
MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocdeck.cpp.o -MF
CMakeFiles/nrniv_lib.dir/__/ivoc/ocdeck.cpp.o.d -o CMakeFiles/nrn
iv_lib.dir/__/ivoc/ocdeck.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neu
ron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uo
i6h6weqwmmgnj5i45e26kxm/spack-src/src/ivoc/ocdeck.cpp
3082 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(patternstim.cpp.o): in function `coreneuron::nrn_se
t_extra_thread0_vdata()':
>> 3083 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P204998/J1239
692/spack-build/spack-stage-neuron-git.b59524a62aca3460c37f6404b39
2a4ff39a588ac_develop-egcf2yuo6tzd54wn4lnwatqn63na7avh/spack-build
-egcf2yu/src/coreneuron/../../../spack-src/src/coreneuron/mechanis
m/patternstim.cpp:53:(.text+0x47ec): undefined reference to `coren
euron::_pattern_reg()'
3084 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_
gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: x86_64/libcorenrnm
ech_internal.a(patternstim.cpp.o): in function `coreneuron::nrn_mk
PatternStim(char const*, double)':
>> 3085 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P204998/J1239
692/spack-build/spack-stage-neuron-git.b59524a62aca3460c37f6404b39
2a4ff39a588ac_develop-egcf2yuo6tzd54wn4lnwatqn63na7avh/spack-build
-egcf2yu/src/coreneuron/../../../spack-src/src/coreneuron/mechanis
m/patternstim.cpp:97:(.text+0x4a39): undefined reference to `coren
euron::pattern_stim_setup_helper(int, double*, int*, int, int, dou
ble*, int*, coreneuron::ThreadDatum*, coreneuron::NrnThread*, core
neuron::Memb_list*, double)'
3086 pgacclnk: child process exit status 1: /gpfs/bbp.cscs.ch/ssd/apps/
bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/binutils
-2.41-vvcm5q/bin/ld
>> 3087 make[3]: *** [/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e
7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26k
xm/spack-build-jorfkk3/share/coreneuron/nrnivmodl_core_makefile:15
0: x86_64/special-core] Error 2
3088 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weq
wmmgnj5i45e26kxm/spack-build-jorfkk3/bin'
>> 3089 make[2]: *** [src/coreneuron/CMakeFiles/nrniv-core.dir/build.make:
88: bin/x86_64/special-core] Error 2
3090 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weq
wmmgnj5i45e26kxm/spack-build-jorfkk3'
>> 3091 make[1]: *** [CMakeFiles/Makefile2:2343: src/coreneuron/CMakeFiles
/nrniv-core.dir/all] Error 2
3092 make[1]: *** Waiting for unfinished jobs....
3093 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i
voc/ocfile.cpp.o
3094 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1
302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5
837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-bu
ild-jorfkk3/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P214142/J1302245/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-st
age-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jo
rfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/ivoc -I/gpfs/bbp.cscs
.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-buil
d/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_
develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/src/nrncvode -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302
253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837
b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-src/s
rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2
14142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e779
3050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/
spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7
cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj
5i45e26kxm/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-g
it.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6w
eqwmmgnj5i45e26kxm/spack-build-jorfkk3 -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-sta
ge-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jor
fkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/nrncvode -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J13022
53/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b
95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-
jorfkk3/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc
78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i
45e26kxm/spack-build-jorfkk3/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack
-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop
-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jorfkk3/src/oc -I/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253
/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95
818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-jo
rfkk3/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp
cproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7c
c78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5
i45e26kxm/spack-build-jorfkk3/src/sundials -I/gpfs/bbp.cscs.ch/ssd
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-8.2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ap
plications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib:/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/i
nstall_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64:/gpfs/bbp.cs
cs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-s
kylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib:/gpfs/bbp.cscs.ch/ssd/apps/
bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3
.11.6-bj4i6m/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_a
pplications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq/lib:::::
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::: ../../lib/libnrngnu.a ../../lib/li
bsparse13.a /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applic
ations/install_gcc-12.3.0-skylake/readline-8.2-pdugg7/lib/libreadl
ine.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_application
s/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libcurses.so /
gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/instal
l_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libform.so /gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install
_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64/libcaliper.so.2.11
.0 -lpthread -lmpi -ldl /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/
stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/li
b/libpython3.11.so -ldl -lpthread -lmpi -lnvcpumath -Wl,-rpath-lin
k,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/ins
tall_gcc-12.3.0-skylake/adiak-0.4.0-hficqq/lib
3560 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weq
wmmgnj5i45e26kxm/spack-build-jorfkk3'
3561 [ 39%] Built target nrniv_lib
3562 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git
.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weq
wmmgnj5i45e26kxm/spack-build-jorfkk3'
>> 3563 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302253/spack-build/spack-stage-neuron-git.264f7cc78e12e7793050e3e5837b95818e47b0d8_develop-jorfkk3uoi6h6weqwmmgnj5i45e26kxm/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i7n10: task 0: Exited with exit code 1
section_end:1717164809:step_script section_start:1717164809:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=212518 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1302253 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=212554 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1302253 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=212595 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1302253 responseStatus=201 Created token=glcbt-64
section_end:1717164811:upload_artifacts_on_failure section_start:1717164811:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1717164813:cleanup_file_variables ERROR: Job failed: exit status 1

Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1717163728:resolve_secrets Resolving secrets
section_end:1717163728:resolve_secrets section_start:1717163728:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2897363989, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 214142, build ref , job ID 1302247
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1302247_PROD_P2160_CP0_C8
Job parameters: memory=160G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2225919
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1302247_PROD_P2160_CP0_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142 --ntasks=2 --jobid=2225919 --cpus-per-task=8 --mem=160G
section_end:1717163729:prepare_executor section_start:1717163729:prepare_script Preparing environment
Using git from spack modules
Running on r1i5n23 via bbpv1.epfl.ch...
section_end:1717163733:prepare_script section_start:1717163733:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1717163734:get_sources section_start:1717163734:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:nmodl-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=141494 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1717163739:restore_cache section_start:1717163739:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for spack_setup (1302245)...
Runtime platform  arch=amd64 os=linux pid=141833 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1302245 responseStatus=200 OK token=glcbt-64
section_end:1717163741:download_artifacts section_start:1717163741:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302247/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302247/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302247/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302247/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302247/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302247/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/J1302245/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P214142/J1302247_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install nmodl%gcc ~legacy-unit
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2225919/ccache
Config file: /nvme/bbpcihpcproj12/2225919/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Fri May 31 15:55:47 2024
Local storage:
Cache size (GB): 0.47 / 0.51 (91.37%)
Files: 4708
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- nmodl%gcc~legacy-unit
Concretized
--------------------------------
- dvmlelh nmodl@git.6426652bba919a208b785054e3fd12c42587bb68=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
==> Installing nmodl-git.6426652bba919a208b785054e3fd12c42587bb68=develop-dvmlelhim7w6kad6xan52v3rcqu3z3jb [19/19]
==> No binary for nmodl-git.6426652bba919a208b785054e3fd12c42587bb68=develop-dvmlelhim7w6kad6xan52v3rcqu3z3jb found: installing from source
==> No patches needed for nmodl
==> nmodl: Executing phase: 'cmake'
==> nmodl: Executing phase: 'build'
==> nmodl: Executing phase: 'install'
==> nmodl: Successfully installed nmodl-git.6426652bba919a208b785054e3fd12c42587bb68=develop-dvmlelhim7w6kad6xan52v3rcqu3z3jb
Stage: 42.00s. Cmake: 2.66s. Build: 1m 35.13s. Install: 1.39s. Post-install: 0.35s. Total: 2m 21.79s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P214142/software/install_gcc-12.3.0-skylake/nmodl-git.6426652bba919a208b785054e3fd12c42587bb68_develop-dvmlel
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be dvmlelhim7w6kad6xan52v3rcqu3z3jb
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2225919/ccache
Config file: /nvme/bbpcihpcproj12/2225919/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Fri May 31 16:00:36 2024
Cacheable calls: 138 / 165 (83.64%)
Hits: 136 / 138 (98.55%)
Direct: 28 / 136 (20.59%)
Preprocessed: 108 / 136 (79.41%)
Misses: 2 / 138 ( 1.45%)
Uncacheable calls: 27 / 165 (16.36%)
Called for linking: 24 / 27 (88.89%)
No input file: 3 / 27 (11.11%)
Successful lookups:
Direct: 28 / 138 (20.29%)
Preprocessed: 108 / 110 (98.18%)
Local storage:
Cache size (GB): 0.46 / 0.51 (90.48%)
Files: 4712
Hits: 136 / 138 (98.55%)
Misses: 2 / 138 ( 1.45%)
Reads: 276
Writes: 4
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1717164038:step_script section_start:1717164038:archive_cache Saving cache for successful job
Using git from spack modules
Creating cache build:nmodl-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=151730 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected
Created cache
section_end:1717164062:archive_cache section_start:1717164062:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=151882 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1302247 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=151921 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1302247 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=151961 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1302247 responseStatus=201 Created token=glcbt-64
section_end:1717164064:upload_artifacts_on_success section_start:1717164064:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1717164065:cleanup_file_variables Job succeeded
This file has been truncated, but you can view the full file.
Running with gitlab-runner 15.4.0 (43b2dc3d)
 on macos-arm64 vGzz-bdp
section_start:1717163594:resolve_secrets Resolving secrets
section_end:1717163594:resolve_secrets section_start:1717163594:prepare_executor Preparing the "shell" executor
Using Shell executor...
section_end:1717163594:prepare_executor section_start:1717163594:prepare_script Preparing environment
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1717163594:prepare_script section_start:1717163594:get_sources Getting source from Git repository
Fetching changes with git depth set to 20...
Initialized empty Git repository in /Users/gitlab-runner/builds/0/P214142/J1302244/hpc/cellular/nrn/.git/
Created fresh repository.
Checking out 264f7cc7 as cornu/mod_list_for_nrnivmodl_core...
Skipping Git submodules setup
section_end:1717163596:get_sources section_start:1717163596:restore_cache Restoring cache
Checking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-cornu/mod_list_for_nrnivmodl_core-1-non_protected...
Runtime platform  arch=arm64 os=darwin pid=74091 revision=43b2dc3d version=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.
Successfully extracted cache
section_end:1717163596:restore_cache section_start:1717163596:step_script Executing "step_script" stage of the job script
$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command
$ real_python=$(python3 resolve_shim.py)
$ echo "python3=$(command -v python3) is really ${real_python}"
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv
$ venv/bin/python3 -m ensurepip --upgrade --default-pip
Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmprp3bhumy
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmprp3bhumy/setuptools-68.2.2-py3-none-any.whl
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmprp3bhumy/pip-23.3.1-py3-none-any.whl
Installing collected packages: setuptools, pip
Successfully installed pip-23.3.1 setuptools-68.2.2
$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1)
Collecting pip
Using cached pip-24.0-py3-none-any.whl.metadata (3.6 kB)
Collecting wheel (from -r nrn_requirements.txt (line 1))
Using cached wheel-0.43.0-py3-none-any.whl.metadata (2.2 kB)
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (68.2.2)
Collecting setuptools (from -r nrn_requirements.txt (line 2))
Using cached setuptools-70.0.0-py3-none-any.whl.metadata (5.9 kB)
Collecting setuptools_scm (from -r nrn_requirements.txt (line 3))
Using cached setuptools_scm-8.1.0-py3-none-any.whl.metadata (6.6 kB)
Collecting scikit-build (from -r nrn_requirements.txt (line 4))
Using cached scikit_build-0.17.6-py3-none-any.whl.metadata (14 kB)
Collecting matplotlib (from -r nrn_requirements.txt (line 5))
Using cached matplotlib-3.9.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (11 kB)
Collecting bokeh<3 (from -r nrn_requirements.txt (line 7))
Using cached bokeh-2.4.3-py3-none-any.whl.metadata (14 kB)
Collecting ipython (from -r nrn_requirements.txt (line 8))
Using cached ipython-8.25.0-py3-none-any.whl.metadata (4.9 kB)
Collecting cython<3 (from -r nrn_requirements.txt (line 9))
Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB)
Collecting packaging (from -r nrn_requirements.txt (line 10))
Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pytest<=8.1.1 (from -r nrn_requirements.txt (line 11))
Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB)
Collecting pytest-cov (from -r nrn_requirements.txt (line 12))
Using cached pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB)
Collecting mpi4py (from -r nrn_requirements.txt (line 13))
Using cached mpi4py-3.1.6-cp310-cp310-macosx_12_0_arm64.whl
Collecting numpy (from -r nrn_requirements.txt (line 14))
Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB)
Collecting find_libpython (from -r nrn_requirements.txt (line 15))
Using cached find_libpython-0.4.0-py3-none-any.whl.metadata (2.8 kB)
Collecting tomli>=1 (from setuptools_scm->-r nrn_requirements.txt (line 3))
Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB)
Collecting distro (from scikit-build->-r nrn_requirements.txt (line 4))
Using cached distro-1.9.0-py3-none-any.whl.metadata (6.8 kB)
Collecting contourpy>=1.0.1 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting cycler>=0.10 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached fonttools-4.52.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (161 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB)
Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.2 kB)
Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB)
Collecting python-dateutil>=2.7 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting Jinja2>=2.9 (from bokeh<3->-r nrn_requirements.txt (line 7))
Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
Collecting PyYAML>=3.10 (from bokeh<3->-r nrn_requirements.txt (line 7))
Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB)
Collecting tornado>=5.1 (from bokeh<3->-r nrn_requirements.txt (line 7))
Using cached tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl.metadata (2.5 kB)
Collecting typing-extensions>=3.10.0 (from bokeh<3->-r nrn_requirements.txt (line 7))
Using cached typing_extensions-4.12.0-py3-none-any.whl.metadata (3.0 kB)
Collecting decorator (from ipython->-r nrn_requirements.txt (line 8))
Using cached decorator-5.1.1-py3-none-any.whl.metadata (4.0 kB)
Collecting jedi>=0.16 (from ipython->-r nrn_requirements.txt (line 8))
Using cached jedi-0.19.1-py2.py3-none-any.whl.metadata (22 kB)
Collecting matplotlib-inline (from ipython->-r nrn_requirements.txt (line 8))
Using cached matplotlib_inline-0.1.7-py3-none-any.whl.metadata (3.9 kB)
Collecting prompt-toolkit<3.1.0,>=3.0.41 (from ipython->-r nrn_requirements.txt (line 8))
Using cached prompt_toolkit-3.0.45-py3-none-any.whl.metadata (6.4 kB)
Collecting pygments>=2.4.0 (from ipython->-r nrn_requirements.txt (line 8))
Using cached pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB)
Collecting stack-data (from ipython->-r nrn_requirements.txt (line 8))
Using cached stack_data-0.6.3-py3-none-any.whl.metadata (18 kB)
Collecting traitlets>=5.13.0 (from ipython->-r nrn_requirements.txt (line 8))
Using cached traitlets-5.14.3-py3-none-any.whl.metadata (10 kB)
Collecting exceptiongroup (from ipython->-r nrn_requirements.txt (line 8))
Using cached exceptiongroup-1.2.1-py3-none-any.whl.metadata (6.6 kB)
Collecting pexpect>4.3 (from ipython->-r nrn_requirements.txt (line 8))
Using cached pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB)
Collecting iniconfig (from pytest<=8.1.1->-r nrn_requirements.txt (line 11))
Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
Collecting pluggy<2.0,>=1.4 (from pytest<=8.1.1->-r nrn_requirements.txt (line 11))
Using cached pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB)
Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov->-r nrn_requirements.txt (line 12))
Using cached coverage-7.5.3-cp310-cp310-macosx_11_0_arm64.whl.metadata (8.2 kB)
Collecting parso<0.9.0,>=0.8.3 (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 8))
Using cached parso-0.8.4-py2.py3-none-any.whl.metadata (7.7 kB)
Collecting MarkupSafe>=2.0 (from Jinja2>=2.9->bokeh<3->-r nrn_requirements.txt (line 7))
Using cached MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB)
Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 8))
Using cached ptyprocess-0.7.0-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting wcwidth (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 8))
Using cached wcwidth-0.2.13-py2.py3-none-any.whl.metadata (14 kB)
Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5))
Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting executing>=1.2.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8))
Using cached executing-2.0.1-py2.py3-none-any.whl.metadata (9.0 kB)
Collecting asttokens>=2.1.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8))
Using cached asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB)
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Installing collected packages: wcwidth, pure-eval, ptyprocess, find_libpython, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, executing, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython
Attempting uninstall: setuptools
Found existing installation: setuptools 68.2.2
Uninstalling setuptools-68.2.2:
Successfully uninstalled setuptools-68.2.2
Attempting uninstall: pip
Found existing installation: pip 23.3.1
Uninstalling pip-23.3.1:
Successfully uninstalled pip-23.3.1
Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 PyYAML-6.0.1 asttokens-2.4.1 bokeh-2.4.3 contourpy-1.2.1 coverage-7.5.3 cycler-0.12.1 cython-0.29.37 decorator-5.1.1 distro-1.9.0 exceptiongroup-1.2.1 executing-2.0.1 find_libpython-0.4.0 fonttools-4.52.4 iniconfig-2.0.0 ipython-8.25.0 jedi-0.19.1 kiwisolver-1.4.5 matplotlib-3.9.0 matplotlib-inline-0.1.7 mpi4py-3.1.6 numpy-1.26.4 packaging-24.0 parso-0.8.4 pexpect-4.9.0 pillow-10.3.0 pip-24.0 pluggy-1.5.0 prompt-toolkit-3.0.45 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.18.0 pyparsing-3.1.2 pytest-8.1.1 pytest-cov-5.0.0 python-dateutil-2.9.0.post0 scikit-build-0.17.6 setuptools-70.0.0 setuptools_scm-8.1.0 six-1.16.0 stack-data-0.6.3 tomli-2.0.1 tornado-6.4 traitlets-5.14.3 typing-extensions-4.12.0 wcwidth-0.2.13 wheel-0.43.0
$ git submodule update --init --recursive --force --depth 1 -- external/nmodl
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl'
Cloning into '/Users/gitlab-runner/builds/0/P214142/J1302244/hpc/cellular/nrn/external/nmodl'...
From https://github.com/BlueBrain/nmodl
* branch 70553cc4d9092aafed42aa49ac4e730830af1124 -> FETCH_HEAD
Submodule path 'external/nmodl': checked out '70553cc4d9092aafed42aa49ac4e730830af1124'
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions'
Submodule 'ext/backward' (https://github.com/bombela/backward-cpp.git) registered for path 'external/nmodl/ext/backward'
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2'
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11'
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen'
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt'
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json'
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11'
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog'
Submodule 'test/usecases/references' (https://github.com/BlueBrain/nmodl-references.git) registered for path 'external/nmodl/test/usecases/references'
Cloning into '/Users/gitlab-runner/builds/0/P214142/J1302244/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'...
Cloning into '/Users/gitlab-runner/builds/0/P214142/J1302244/hpc/cellular/nrn/external/nmodl/ext/backward'...
Cloning into '/Users/gitlab-runner/builds/0/P214142/J1302244/hpc/cellular/nrn/external/nmodl/ext/catch2'...
Cloning into '/Users/gitlab-runner/builds/0/P214142/J1302244/hpc/cellular/nrn/external/nmodl/ext/cli11'...
Cloning into '/Users/gitlab-runner/builds/0/P214142/J1302244/hpc/cellular/nrn/external/nmodl/ext/eigen'...
Cloning into '/Users/gitlab-runner/builds/0/P214142/J1302244/hpc/cellular/nrn/external/nmodl/ext/fmt'...
Cloning into '/Users/gitlab-runner/builds/0/P214142/J1302244/hpc/cellular/nrn/external/nmodl/ext/json'...
Cloning into '/Users/gitlab-runner/builds/0/P214142/J1302244/hpc/cellular/nrn/external/nmodl/ext/pybind11'...
Cloning into '/Users/gitlab-runner/builds/0/P214142/J1302244/hpc/cellular/nrn/external/nmodl/ext/spdlog'...
Cloning into '/Users/gitlab-runner/builds/0/P214142/J1302244/hpc/cellular/nrn/external/nmodl/test/usecases/references'...
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out '8f8115597817365c5c4fa39e217b3ab0b3640cb2'
Submodule path 'external/nmodl/ext/backward': checked out '51f0700452cf71c57d43c2d028277b24cde32502'
From https://github.com/catchorg/Catch2
* branch 8ac8190e494a381072c89f5e161b92a08d98b37b -> FETCH_HEAD
Submodule path 'external/nmodl/ext/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
From https://github.com/CLIUtils/CLI11
* branch f4d0731cebb123ff0ace712c099dffbcd2c58e5a -> FETCH_HEAD
Submodule path 'external/nmodl/ext/cli11': checked out 'f4d0731cebb123ff0ace712c099dffbcd2c58e5a'
From https://gitlab.com/libeigen/eigen
* branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
From https://github.com/fmtlib/fmt
* branch e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281'
From https://github.com/nlohmann/json
* branch 9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/json': checked out '9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03'
From https://github.com/pybind/pybind11
* branch 8a099e44b3d5f85b20f05828d919d2332a8de841 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/pybind11': checked out '8a099e44b3d5f85b20f05828d919d2332a8de841'
From https://github.com/gabime/spdlog
* branch 7c02e204c92545f869e2f04edaab1f19fe8b19fd -> FETCH_HEAD
Submodule path 'external/nmodl/ext/spdlog': checked out '7c02e204c92545f869e2f04edaab1f19fe8b19fd'
From https://github.com/BlueBrain/nmodl-references
* branch c9f0aaa9270e9a49598c5424ad03eaa48a7eec47 -> FETCH_HEAD
Submodule path 'external/nmodl/test/usecases/references': checked out 'c9f0aaa9270e9a49598c5424ad03eaa48a7eec47'
$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt
Ignoring importlib-metadata: markers 'python_version < "3.9"' don't match your environment
Ignoring importlib-resources: markers 'python_version < "3.9"' don't match your environment
Collecting scikit-build-core (from -r external/nmodl/requirements.txt (line 2))
Using cached scikit_build_core-0.9.4-py3-none-any.whl.metadata (19 kB)
Requirement already satisfied: setuptools-scm>=8.0 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 3)) (8.1.0)
Requirement already satisfied: Jinja2>=2.9.3 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 4)) (3.1.4)
Requirement already satisfied: PyYAML>=3.13 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 5)) (6.0.1)
Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 7)) (0.4.0)
Collecting sympy>=1.3 (from -r external/nmodl/requirements.txt (line 8))
Using cached sympy-1.12.1-py3-none-any.whl.metadata (12 kB)
Requirement already satisfied: pytest<=8.1.1 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 12)) (8.1.1)
Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 13)) (5.0.0)
Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 14)) (1.26.4)
Collecting jupyter-client (from -r external/nmodl/requirements.txt (line 16))
Using cached jupyter_client-8.6.2-py3-none-any.whl.metadata (8.3 kB)
Collecting jupyter (from -r external/nmodl/requirements.txt (line 17))
Using cached jupyter-1.0.0-py2.py3-none-any.whl.metadata (995 bytes)
Collecting myst_parser<2.0.0 (from -r external/nmodl/requirements.txt (line 18))
Using cached myst_parser-1.0.0-py3-none-any.whl.metadata (5.5 kB)
Collecting mistune<3 (from -r external/nmodl/requirements.txt (line 19))
Using cached mistune-2.0.5-py2.py3-none-any.whl.metadata (1.5 kB)
Collecting nbconvert (from -r external/nmodl/requirements.txt (line 20))
Using cached nbconvert-7.16.4-py3-none-any.whl.metadata (8.5 kB)
Collecting nbsphinx>=0.3.2 (from -r external/nmodl/requirements.txt (line 21))
Using cached nbsphinx-0.9.4-py3-none-any.whl.metadata (2.1 kB)
Collecting sphinxcontrib-applehelp<1.0.3 (from -r external/nmodl/requirements.txt (line 22))
Using cached sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl.metadata (1.4 kB)
Collecting sphinxcontrib-htmlhelp<=2.0.0 (from -r external/nmodl/requirements.txt (line 23))
Using cached sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl.metadata (1.6 kB)
Collecting sphinx<6 (from -r external/nmodl/requirements.txt (line 24))
Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB)
Collecting sphinx-rtd-theme (from -r external/nmodl/requirements.txt (line 25))
Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl.metadata (4.4 kB)
Collecting docutils<0.20 (from -r external/nmodl/requirements.txt (line 26))
Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB)
Requirement already satisfied: exceptiongroup>=1.0 in ./venv/lib/python3.10/site-packages (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) (1.2.1)
Requirement already satisfied: packaging>=21.3 in ./venv/lib/python3.10/site-packages (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) (24.0)
Collecting pathspec>=0.10.1 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2))
Using cached pathspec-0.12.1-py3-none-any.whl.metadata (21 kB)
Requirement already satisfied: tomli>=1.2.2 in ./venv/lib/python3.10/site-packages (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) (2.0.1)
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from setuptools-scm>=8.0->-r external/nmodl/requirements.txt (line 3)) (70.0.0)
Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 4)) (2.1.5)
Collecting mpmath<1.4.0,>=1.1.0 (from sympy>=1.3->-r external/nmodl/requirements.txt (line 8))
Using cached mpmath-1.3.0-py3-none-any.whl.metadata (8.6 kB)
Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r external/nmodl/requirements.txt (line 12)) (2.0.0)
Requirement already satisfied: pluggy<2.0,>=1.4 in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r external/nmodl/requirements.txt (line 12)) (1.5.0)
Requirement already satisfied: coverage>=5.2.1 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=5.2.1->pytest-cov->-r external/nmodl/requirements.txt (line 13)) (7.5.3)
Collecting jupyter-core!=5.0.*,>=4.12 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
Using cached jupyter_core-5.7.2-py3-none-any.whl.metadata (3.4 kB)
Requirement already satisfied: python-dateutil>=2.8.2 in ./venv/lib/python3.10/site-packages (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) (2.9.0.post0)
Collecting pyzmq>=23.0 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
Using cached pyzmq-26.0.3-cp310-cp310-macosx_10_15_universal2.whl.metadata (6.1 kB)
Requirement already satisfied: tornado>=6.2 in ./venv/lib/python3.10/site-packages (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) (6.4)
Requirement already satisfied: traitlets>=5.3 in ./venv/lib/python3.10/site-packages (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) (5.14.3)
Collecting notebook (from jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached notebook-7.2.0-py3-none-any.whl.metadata (10 kB)
Collecting qtconsole (from jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached qtconsole-5.5.2-py3-none-any.whl.metadata (5.1 kB)
Collecting jupyter-console (from jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached jupyter_console-6.6.3-py3-none-any.whl.metadata (5.8 kB)
Collecting ipykernel (from jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached ipykernel-6.29.4-py3-none-any.whl.metadata (6.3 kB)
Collecting ipywidgets (from jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached ipywidgets-8.1.3-py3-none-any.whl.metadata (2.4 kB)
Collecting markdown-it-py<3.0.0,>=1.0.0 (from myst_parser<2.0.0->-r external/nmodl/requirements.txt (line 18))
Using cached markdown_it_py-2.2.0-py3-none-any.whl.metadata (6.8 kB)
Collecting mdit-py-plugins~=0.3.4 (from myst_parser<2.0.0->-r external/nmodl/requirements.txt (line 18))
Using cached mdit_py_plugins-0.3.5-py3-none-any.whl.metadata (2.8 kB)
Collecting beautifulsoup4 (from nbconvert->-r external/nmodl/requirements.txt (line 20))
Using cached beautifulsoup4-4.12.3-py3-none-any.whl.metadata (3.8 kB)
Collecting bleach!=5.0.0 (from nbconvert->-r external/nmodl/requirements.txt (line 20))
Using cached bleach-6.1.0-py3-none-any.whl.metadata (30 kB)
Collecting defusedxml (from nbconvert->-r external/nmodl/requirements.txt (line 20))
Using cached defusedxml-0.7.1-py2.py3-none-any.whl.metadata (32 kB)
Collecting jupyterlab-pygments (from nbconvert->-r external/nmodl/requirements.txt (line 20))
Using cached jupyterlab_pygments-0.3.0-py3-none-any.whl.metadata (4.4 kB)
Collecting nbclient>=0.5.0 (from nbconvert->-r external/nmodl/requirements.txt (line 20))
Using cached nbclient-0.10.0-py3-none-any.whl.metadata (7.8 kB)
Collecting nbformat>=5.7 (from nbconvert->-r external/nmodl/requirements.txt (line 20))
Using cached nbformat-5.10.4-py3-none-any.whl.metadata (3.6 kB)
Collecting pandocfilters>=1.4.1 (from nbconvert->-r external/nmodl/requirements.txt (line 20))
Using cached pandocfilters-1.5.1-py2.py3-none-any.whl.metadata (9.0 kB)
Requirement already satisfied: pygments>=2.4.1 in ./venv/lib/python3.10/site-packages (from nbconvert->-r external/nmodl/requirements.txt (line 20)) (2.18.0)
Collecting tinycss2 (from nbconvert->-r external/nmodl/requirements.txt (line 20))
Using cached tinycss2-1.3.0-py3-none-any.whl.metadata (3.0 kB)
Collecting sphinxcontrib-devhelp (from sphinx<6->-r external/nmodl/requirements.txt (line 24))
Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl.metadata (2.3 kB)
Collecting sphinxcontrib-jsmath (from sphinx<6->-r external/nmodl/requirements.txt (line 24))
Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB)
Collecting sphinxcontrib-serializinghtml>=1.1.5 (from sphinx<6->-r external/nmodl/requirements.txt (line 24))
Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl.metadata (2.4 kB)
Collecting sphinxcontrib-qthelp (from sphinx<6->-r external/nmodl/requirements.txt (line 24))
Using cached sphinxcontrib_qthelp-1.0.7-py3-none-any.whl.metadata (2.2 kB)
Collecting snowballstemmer>=2.0 (from sphinx<6->-r external/nmodl/requirements.txt (line 24))
Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB)
Collecting babel>=2.9 (from sphinx<6->-r external/nmodl/requirements.txt (line 24))
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