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Created January 29, 2024 16:28
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/189119 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2692.
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1706543662:resolve_secrets Resolving secrets
section_end:1706543662:resolve_secrets section_start:1706543662:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1132792652, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 189119, build ref , job ID 1137108
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189119, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1137108_PROD_P2160_CP6_C3
Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1992485
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J1137108_PROD_P2160_CP6_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189119 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189119 --ntasks=2 --jobid=1992485 --cpus-per-task=8 --mem=76G
section_end:1706543663:prepare_executor section_start:1706543663:prepare_script Preparing environment
Using git from spack modules
Running on r1i4n30 via bbpv1.epfl.ch...
section_end:1706543668:prepare_script section_start:1706543668:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1706543669:get_sources section_start:1706543669:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:nmodl-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=16563 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1706543674:restore_cache section_start:1706543674:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for spack_setup (1137106)...
Runtime platform  arch=amd64 os=linux pid=17298 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1137106 responseStatus=200 OK token=64_H_o4C
section_end:1706543675:download_artifacts section_start:1706543675:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137108/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137108/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137108/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137108/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137108/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:119 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:124 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:129 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:137 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:146 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:200 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:205 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:211 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:221 terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137108/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/concretizer.yaml:22 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106/spack/etc/spack/defaults/concretizer.yaml:36 unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189119/J1137108_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install nmodl%gcc ~legacy-unit
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1992485/ccache
Primary config: /nvme/bbpcihpcproj12/1992485/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Jan 29 16:54:40 2024
Hits: 0 / 0
Direct: 0 / 0
Preprocessed: 0 / 0
Misses: 0
Direct: 0
Preprocessed: 0
Primary storage:
Hits: 0 / 0
Misses: 0
Cache size (GB): 0.46 / 0.51 (90.57 %)
Files: 1369
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- nmodl%gcc~legacy-unit
Concretized
--------------------------------
- 4wefzvy nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^] uucrzmi ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] d7dkmvv ^py-flit-core@3.7.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2zoh6fg ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a53pqvu ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6tqbi2i ^py-setuptools-scm@7.0.5%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] c564cvo ^py-typing-extensions@4.8.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] oumzlg3 ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] yqakowj ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-flit-core-3.7.1-d7dkmv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-typing-extensions-4.8.0-c564cv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-scm-7.0.5-6tqbi2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm
==> Installing nmodl-develop-4wefzvymblhrln4aedc5hnhict43qt45
==> No binary for nmodl-develop-4wefzvymblhrln4aedc5hnhict43qt45 found: installing from source
==> No patches needed for nmodl
==> nmodl: Executing phase: 'cmake'
==> nmodl: Executing phase: 'build'
==> nmodl: Executing phase: 'install'
==> nmodl: Successfully installed nmodl-develop-4wefzvymblhrln4aedc5hnhict43qt45
Fetch: 1m 23.61s. Build: 6m 30.30s. Total: 7m 53.91s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/software/install_gcc-12.2.0-skylake/nmodl-develop-4wefzv
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be 4wefzvymblhrln4aedc5hnhict43qt45
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
Cache directory: /nvme/bbpcihpcproj12/1992485/ccache
Primary config: /nvme/bbpcihpcproj12/1992485/ccache/ccache.conf
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
Stats updated: Mon Jan 29 17:07:47 2024
Hits: 133 / 135 (98.52 %)
Direct: 27 / 135 (20.00 %)
Preprocessed: 106 / 108 (98.15 %)
Misses: 2
Direct: 108
Preprocessed: 2
Uncacheable: 25
Primary storage:
Hits: 160 / 270 (59.26 %)
Misses: 110
Cache size (GB): 0.46 / 0.51 (90.60 %)
Files: 1373
Uncacheable:
Called for linking: 24
No input file: 1
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.27.p1.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1706544474:step_script section_start:1706544474:archive_cache Saving cache for successful job
Using git from spack modules
Creating cache build:nmodl-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=35627 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected
Created cache
section_end:1706544495:archive_cache section_start:1706544495:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
srun: error: Unable to confirm allocation for job 1992485: Socket timed out on send/recv operation
srun: Check SLURM_JOB_ID environment variable. Expired or invalid job 1992485
section_end:1706544557:upload_artifacts_on_success section_start:1706544557:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1706544594:cleanup_file_variables ERROR: Job failed: exit status 1

Running with gitlab-runner 15.4.0 (43b2dc3d)
 on macos-arm64 vGzz-bdp
section_start:1706543540:resolve_secrets Resolving secrets
section_end:1706543540:resolve_secrets section_start:1706543540:prepare_executor Preparing the "shell" executor
Using Shell executor...
section_end:1706543540:prepare_executor section_start:1706543540:prepare_script Preparing environment
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1706543540:prepare_script section_start:1706543540:get_sources Getting source from Git repository
Fetching changes with git depth set to 20...
Initialized empty Git repository in /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/.git/
Created fresh repository.
Checking out 2a7de92b as jelic/refactor_nrn_sort...
Skipping Git submodules setup
section_end:1706543542:get_sources section_start:1706543542:restore_cache Restoring cache
Checking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-jelic/refactor_nrn_sort-1-non_protected...
Runtime platform  arch=arm64 os=darwin pid=83505 revision=43b2dc3d version=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.
Successfully extracted cache
section_end:1706543543:restore_cache section_start:1706543543:step_script Executing "step_script" stage of the job script
$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command
$ real_python=$(python3 resolve_shim.py)
$ echo "python3=$(command -v python3) is really ${real_python}"
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv
$ venv/bin/python3 -m ensurepip --upgrade --default-pip
Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpiv07jj9e
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpiv07jj9e/setuptools-68.2.2-py3-none-any.whl
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpiv07jj9e/pip-23.3.1-py3-none-any.whl
Installing collected packages: setuptools, pip
Successfully installed pip-23.3.1 setuptools-68.2.2
$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1)
Collecting pip
Using cached pip-23.3.2-py3-none-any.whl.metadata (3.5 kB)
Collecting wheel (from -r nrn_requirements.txt (line 1))
Using cached wheel-0.42.0-py3-none-any.whl.metadata (2.2 kB)
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (68.2.2)
Collecting setuptools (from -r nrn_requirements.txt (line 2))
Using cached setuptools-69.0.3-py3-none-any.whl.metadata (6.3 kB)
Collecting setuptools_scm (from -r nrn_requirements.txt (line 3))
Using cached setuptools_scm-8.0.4-py3-none-any.whl.metadata (6.4 kB)
Collecting scikit-build (from -r nrn_requirements.txt (line 4))
Using cached scikit_build-0.17.6-py3-none-any.whl.metadata (14 kB)
Collecting matplotlib (from -r nrn_requirements.txt (line 5))
Using cached matplotlib-3.8.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting bokeh<3 (from -r nrn_requirements.txt (line 7))
Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB)
Collecting ipython (from -r nrn_requirements.txt (line 8))
Using cached ipython-8.20.0-py3-none-any.whl.metadata (5.9 kB)
Collecting cython<3 (from -r nrn_requirements.txt (line 9))
Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB)
Collecting packaging (from -r nrn_requirements.txt (line 10))
Using cached packaging-23.2-py3-none-any.whl.metadata (3.2 kB)
Collecting pytest (from -r nrn_requirements.txt (line 11))
Using cached pytest-8.0.0-py3-none-any.whl.metadata (7.8 kB)
Collecting pytest-cov (from -r nrn_requirements.txt (line 12))
Using cached pytest_cov-4.1.0-py3-none-any.whl.metadata (26 kB)
Collecting mpi4py (from -r nrn_requirements.txt (line 13))
Using cached mpi4py-3.1.5-cp310-cp310-macosx_12_0_arm64.whl
Collecting numpy (from -r nrn_requirements.txt (line 14))
Using cached numpy-1.26.3-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB)
Collecting find_libpython (from -r nrn_requirements.txt (line 15))
Using cached find_libpython-0.3.1-py3-none-any.whl.metadata (2.7 kB)
Collecting typing-extensions (from setuptools_scm->-r nrn_requirements.txt (line 3))
Using cached typing_extensions-4.9.0-py3-none-any.whl.metadata (3.0 kB)
Collecting tomli>=1 (from setuptools_scm->-r nrn_requirements.txt (line 3))
Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Collecting distro (from scikit-build->-r nrn_requirements.txt (line 4))
Using cached distro-1.9.0-py3-none-any.whl.metadata (6.8 kB)
Collecting contourpy>=1.0.1 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached contourpy-1.2.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting cycler>=0.10 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached fonttools-4.47.2-cp310-cp310-macosx_10_9_universal2.whl.metadata (157 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB)
Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached pillow-10.2.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.7 kB)
Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached pyparsing-3.1.1-py3-none-any.whl.metadata (5.1 kB)
Collecting python-dateutil>=2.7 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
Collecting Jinja2>=2.9 (from bokeh<3->-r nrn_requirements.txt (line 7))
Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
Collecting PyYAML>=3.10 (from bokeh<3->-r nrn_requirements.txt (line 7))
Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB)
Collecting tornado>=5.1 (from bokeh<3->-r nrn_requirements.txt (line 7))
Using cached tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl.metadata (2.5 kB)
Collecting decorator (from ipython->-r nrn_requirements.txt (line 8))
Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB)
Collecting jedi>=0.16 (from ipython->-r nrn_requirements.txt (line 8))
Using cached jedi-0.19.1-py2.py3-none-any.whl.metadata (22 kB)
Collecting matplotlib-inline (from ipython->-r nrn_requirements.txt (line 8))
Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB)
Collecting prompt-toolkit<3.1.0,>=3.0.41 (from ipython->-r nrn_requirements.txt (line 8))
Using cached prompt_toolkit-3.0.43-py3-none-any.whl.metadata (6.5 kB)
Collecting pygments>=2.4.0 (from ipython->-r nrn_requirements.txt (line 8))
Using cached pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB)
Collecting stack-data (from ipython->-r nrn_requirements.txt (line 8))
Using cached stack_data-0.6.3-py3-none-any.whl.metadata (18 kB)
Collecting traitlets>=5 (from ipython->-r nrn_requirements.txt (line 8))
Using cached traitlets-5.14.1-py3-none-any.whl.metadata (10 kB)
Collecting exceptiongroup (from ipython->-r nrn_requirements.txt (line 8))
Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB)
Collecting pexpect>4.3 (from ipython->-r nrn_requirements.txt (line 8))
Using cached pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB)
Collecting iniconfig (from pytest->-r nrn_requirements.txt (line 11))
Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Collecting pluggy<2.0,>=1.3.0 (from pytest->-r nrn_requirements.txt (line 11))
Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB)
Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov->-r nrn_requirements.txt (line 12))
Using cached coverage-7.4.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (8.2 kB)
Collecting parso<0.9.0,>=0.8.3 (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 8))
Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB)
Collecting MarkupSafe>=2.0 (from Jinja2>=2.9->bokeh<3->-r nrn_requirements.txt (line 7))
Using cached MarkupSafe-2.1.4-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB)
Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 8))
Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Collecting wcwidth (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 8))
Using cached wcwidth-0.2.13-py2.py3-none-any.whl.metadata (14 kB)
Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5))
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting executing>=1.2.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8))
Using cached executing-2.0.1-py2.py3-none-any.whl.metadata (9.0 kB)
Collecting asttokens>=2.1.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8))
Using cached asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB)
Collecting pure-eval (from stack-data->ipython->-r nrn_requirements.txt (line 8))
Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB)
Using cached pip-23.3.2-py3-none-any.whl (2.1 MB)
Using cached wheel-0.42.0-py3-none-any.whl (65 kB)
Using cached setuptools-69.0.3-py3-none-any.whl (819 kB)
Using cached setuptools_scm-8.0.4-py3-none-any.whl (42 kB)
Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB)
Using cached matplotlib-3.8.2-cp310-cp310-macosx_11_0_arm64.whl (7.5 MB)
Using cached ipython-8.20.0-py3-none-any.whl (809 kB)
Using cached Cython-0.29.37-py2.py3-none-any.whl (989 kB)
Using cached packaging-23.2-py3-none-any.whl (53 kB)
Using cached pytest-8.0.0-py3-none-any.whl (334 kB)
Using cached pytest_cov-4.1.0-py3-none-any.whl (21 kB)
Using cached numpy-1.26.3-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB)
Using cached find_libpython-0.3.1-py3-none-any.whl (8.4 kB)
Using cached contourpy-1.2.0-cp310-cp310-macosx_11_0_arm64.whl (242 kB)
Using cached coverage-7.4.1-cp310-cp310-macosx_11_0_arm64.whl (206 kB)
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Using cached exceptiongroup-1.2.0-py3-none-any.whl (16 kB)
Using cached fonttools-4.47.2-cp310-cp310-macosx_10_9_universal2.whl (2.8 MB)
Using cached jedi-0.19.1-py2.py3-none-any.whl (1.6 MB)
Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB)
Using cached pexpect-4.9.0-py2.py3-none-any.whl (63 kB)
Using cached pillow-10.2.0-cp310-cp310-macosx_11_0_arm64.whl (3.3 MB)
Using cached pluggy-1.4.0-py3-none-any.whl (20 kB)
Using cached prompt_toolkit-3.0.43-py3-none-any.whl (386 kB)
Using cached pygments-2.17.2-py3-none-any.whl (1.2 MB)
Using cached pyparsing-3.1.1-py3-none-any.whl (103 kB)
Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl (169 kB)
Using cached tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl (433 kB)
Using cached traitlets-5.14.1-py3-none-any.whl (85 kB)
Using cached typing_extensions-4.9.0-py3-none-any.whl (32 kB)
Using cached distro-1.9.0-py3-none-any.whl (20 kB)
Using cached stack_data-0.6.3-py3-none-any.whl (24 kB)
Using cached asttokens-2.4.1-py2.py3-none-any.whl (27 kB)
Using cached executing-2.0.1-py2.py3-none-any.whl (24 kB)
Using cached MarkupSafe-2.1.4-cp310-cp310-macosx_10_9_universal2.whl (17 kB)
Using cached wcwidth-0.2.13-py2.py3-none-any.whl (34 kB)
Installing collected packages: wcwidth, pure-eval, ptyprocess, find_libpython, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, executing, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython
Attempting uninstall: setuptools
Found existing installation: setuptools 68.2.2
Uninstalling setuptools-68.2.2:
Successfully uninstalled setuptools-68.2.2
Attempting uninstall: pip
Found existing installation: pip 23.3.1
Uninstalling pip-23.3.1:
Successfully uninstalled pip-23.3.1
Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.4 PyYAML-6.0.1 asttokens-2.4.1 bokeh-2.4.3 contourpy-1.2.0 coverage-7.4.1 cycler-0.12.1 cython-0.29.37 decorator-5.1.1 distro-1.9.0 exceptiongroup-1.2.0 executing-2.0.1 find_libpython-0.3.1 fonttools-4.47.2 iniconfig-2.0.0 ipython-8.20.0 jedi-0.19.1 kiwisolver-1.4.5 matplotlib-3.8.2 matplotlib-inline-0.1.6 mpi4py-3.1.5 numpy-1.26.3 packaging-23.2 parso-0.8.3 pexpect-4.9.0 pillow-10.2.0 pip-23.3.2 pluggy-1.4.0 prompt-toolkit-3.0.43 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.17.2 pyparsing-3.1.1 pytest-8.0.0 pytest-cov-4.1.0 python-dateutil-2.8.2 scikit-build-0.17.6 setuptools-69.0.3 setuptools_scm-8.0.4 six-1.16.0 stack-data-0.6.3 tomli-2.0.1 tornado-6.4 traitlets-5.14.1 typing-extensions-4.9.0 wcwidth-0.2.13 wheel-0.42.0
$ git submodule update --init --recursive --force --depth 1 -- external/nmodl
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl'
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/nmodl'...
Submodule path 'external/nmodl': checked out 'bb4dfd2fbc5209bb1893d3c681157db743ca1dfc'
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions'
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2'
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11'
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen'
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt'
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json'
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11'
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog'
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'...
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/nmodl/ext/catch2'...
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/nmodl/ext/cli11'...
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/nmodl/ext/eigen'...
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/nmodl/ext/fmt'...
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/nmodl/ext/json'...
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/nmodl/ext/pybind11'...
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/nmodl/ext/spdlog'...
From https://github.com/BlueBrain/hpc-coding-conventions
* branch f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d'
From https://github.com/catchorg/Catch2
* branch 3f0283de7a9c43200033da996ff9093be3ac84dc -> FETCH_HEAD
Submodule path 'external/nmodl/ext/catch2': checked out '3f0283de7a9c43200033da996ff9093be3ac84dc'
From https://github.com/CLIUtils/CLI11
* branch b9be5b9444772324459989177108a6a65b8b2769 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/cli11': checked out 'b9be5b9444772324459989177108a6a65b8b2769'
From https://gitlab.com/libeigen/eigen
* branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
From https://github.com/fmtlib/fmt
* branch e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281'
From https://github.com/nlohmann/json
* branch 4f8fba14066156b73f1189a2b8bd568bde5284c5 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/json': checked out '4f8fba14066156b73f1189a2b8bd568bde5284c5'
From https://github.com/pybind/pybind11
* branch 914c06fb252b6cc3727d0eedab6736e88a3fcb01 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/pybind11': checked out '914c06fb252b6cc3727d0eedab6736e88a3fcb01'
From https://github.com/gabime/spdlog
* branch 7e635fca68d014934b4af8a1cf874f63989352b7 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/spdlog': checked out '7e635fca68d014934b4af8a1cf874f63989352b7'
$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt
Requirement already satisfied: Jinja2>=2.9.3 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 1)) (3.1.3)
Requirement already satisfied: PyYAML>=3.13 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 2)) (6.0.1)
Requirement already satisfied: pytest in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 3)) (8.0.0)
Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 4)) (4.1.0)
Collecting sympy (from -r external/nmodl/requirements.txt (line 5))
Using cached sympy-1.12-py3-none-any.whl (5.7 MB)
Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 6)) (1.26.3)
Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 7)) (0.3.1)
Requirement already satisfied: scikit-build in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 8)) (0.17.6)
Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 1)) (2.1.4)
Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.0)
Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (23.2)
Requirement already satisfied: pluggy<2.0,>=1.3.0 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.4.0)
Requirement already satisfied: exceptiongroup>=1.0.0rc8 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.2.0)
Requirement already satisfied: tomli>=1.0.0 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.1)
Requirement already satisfied: coverage>=5.2.1 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=5.2.1->pytest-cov->-r external/nmodl/requirements.txt (line 4)) (7.4.1)
Collecting mpmath>=0.19 (from sympy->-r external/nmodl/requirements.txt (line 5))
Using cached mpmath-1.3.0-py3-none-any.whl (536 kB)
Requirement already satisfied: distro in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (1.9.0)
Requirement already satisfied: setuptools>=42.0.0 in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (69.0.3)
Requirement already satisfied: wheel>=0.32.0 in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (0.42.0)
Installing collected packages: mpmath, sympy
Successfully installed mpmath-1.3.0 sympy-1.12
$ source ./venv/bin/activate
$ export PYTHON=${PWD}/venv/bin/python
$ ${PYTHON} --version
Python 3.10.13
$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"
$ export CXX=${CXX:-g++}
$ export CC=${CC:-gcc}
$ brew install flex bison
Warning: flex 2.6.4_2 is already installed and up-to-date.
To reinstall 2.6.4_2, run:
brew reinstall flex
Warning: bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
brew reinstall bison
$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"
$ export INSTALL_DIR=$(pwd)/install
$ echo $LANG
$ echo $LC_ALL
$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")
$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'
$ cmake_args=(-G Ninja)
$ if [[ -n "${sanitizer}" ]]; then
$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))
$ fi
$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})
$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")
$ mkdir build && cd build
$ echo "Building with ${cmake_args[@]}"
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/venv/bin/python
$ cmake .. "${cmake_args[@]}"
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- Sub-module : missing external/coding-conventions : running git submodule update --init
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions'
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/coding-conventions'...
Submodule path 'external/coding-conventions': checked out '80a2c9013463b89b5c426e18403e9a2f87c59a00'
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123'
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/Random123'...
From https://github.com/BlueBrain/Random123
* branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1'
-- 3rd party project: using Random123 from "external/Random123"
-- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen
Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen'
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/eigen'...
From https://gitlab.com/libeigen/eigen
* branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
-- 3rd party project: using eigen from "external/eigen"
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2")
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6")
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1")
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11'
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/CLI11'...
From https://github.com/CLIUtils/CLI11
* branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2'
-- 3rd party project: using CLI11 from "external/CLI11"
CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Building CoreNEURON
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)")
-- Found Perl: /usr/bin/perl (found version "5.30.3")
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH)
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/nmodl
-- CHECKING FOR FLEX/BISON
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0")
-- Adding Flex include path as : /opt/homebrew/opt/flex/include/
-- NMODL_TEST_FORMATTING: OFF
-- NMODL_GIT_HOOKS: OFF
-- NMODL_GIT_COMMIT_HOOKS:
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg
-- NMODL_STATIC_ANALYSIS: OFF
-- NMODL_TEST_STATIC_ANALYSIS: OFF
-- 3rd party project: using eigen from "ext/eigen"
-- 3rd party project: using fmt from "ext/fmt"
-- Version: 10.2.1
-- Build type: Custom
-- 3rd party project: using json from "ext/json"
CMake Deprecation Warning at external/nmodl/ext/json/CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Using the single-header code from /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/nmodl/ext/json/single_include/
-- 3rd party project: using pybind11 from "ext/pybind11"
CMake Deprecation Warning at external/nmodl/ext/pybind11/CMakeLists.txt:8 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- pybind11 v2.9.2
CMake Warning (dev) at external/nmodl/ext/pybind11/tools/FindPythonLibsNew.cmake:98 (find_package):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
external/nmodl/ext/pybind11/tools/pybind11Tools.cmake:50 (find_package)
external/nmodl/ext/pybind11/tools/pybind11Common.cmake:206 (include)
external/nmodl/ext/pybind11/CMakeLists.txt:200 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/venv/bin/python (found version "3.10.13")
-- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- 3rd party project: using spdlog from "ext/spdlog"
-- Build spdlog: 1.12.0
-- Build type: Custom
-- CHECKING FOR PYTHON
CMake Warning (dev) at external/nmodl/CMakeLists.txt:162 (find_package):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.8")
--
-- Configured NMODL 0.0 (bb4dfd2 2024-01-27 11:12:54 +0100)
--
-- You can now build NMODL using:
-- cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------------+--------------------------------------------------------
-- Target | Description
-- --------------------+--------------------------------------------------------
-- test | Run unit tests
-- install | Will install NMODL to: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install
-- --------------------+--------------------------------------------------------
-- Build option | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER | /usr/bin/g++
-- COMPILE FLAGS | -O1 -g -openmp-simd
-- Build Type | Custom
-- Python Bindings | ON
-- Flex | /opt/homebrew/opt/flex/bin/flex
-- Bison | /opt/homebrew/opt/bison/bin/bison
-- Python | /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/venv/bin/python
-- Linked against | TRUE
-- --------------------+--------------------------------------------------------
-- See documentation : https://github.com/BlueBrain/nmodl/
-- --------------------+--------------------------------------------------------
--
--
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
-- Build option | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER | /usr/bin/g++
-- COMPILE FLAGS | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type | SHARED
-- MPI | ON
-- DYNAMIC | OFF
-- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include
-- OpenMP | ON
-- NMODL PATH | /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/bin/nmodl
-- NMODL FLAGS |
-- GPU Support | OFF
-- Auto Timeout | ON
-- Wrap exp() | OFF
-- SplayTree Queue | ON
-- NetReceive Buffer | ON
-- Caliper | OFF
-- Likwid | OFF
-- Unit Tests | ON
-- Reporting | OFF
-- --------------------+--------------------------------------------------------
--
Extracting link flags from target 'nrngnu', beware that this can be fragile. Got:
Extracting link flags from target 'sparse13', beware that this can be fragile. Got:
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got:
Generating link flags from path /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib
Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
-- Sub-module : missing /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/catch2 : running git submodule update --init
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2'
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/external/catch2'...
Submodule path 'external/catch2': checked out 'c4e3767e265808590986d5db6ca1b5532a7f3d13'
-- Found Python module 'pytest' with version(s): 8.0.0
-- Found Python module 'pytest_cov' with version(s): 4.1.0
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata'
Cloning into '/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/test/rxd/testdata'...
From https://github.com/neuronsimulator/rxdtestdata
* branch 30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD
Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58'
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.5
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.5
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0")
--
-- Configured NEURON 9.0.0
--
-- You can now build NEURON using:
-- cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
-- Target | Description
-- --------------+--------------------------------------------------------------
-- install | Will install NEURON to: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install
-- | Change the install location of NEURON using:
-- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
-- Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER | /usr/bin/gcc
-- CXX COMPILER | /usr/bin/g++
-- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug)
-- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd
-- Shared | ON
-- MPI | ON
-- DYNAMIC | OFF
-- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include
-- LIB | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Python | ON
-- DYNAMIC | OFF
-- MODULE | ON
-- python3.10 (default)
-- EXE | /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/venv/bin/python
-- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10
-- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D | OFF
-- Interviews | OFF
-- CoreNEURON | ON
-- PATH | /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/coreneuron
-- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Tests | ON
-- --------------+--------------------------------------------------------------
-- See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
--
-- Configuring done (28.8s)
-- Generating done (0.1s)
-- Build files have been written to: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build
$ ccache -z
Statistics zeroed
$ ccache -vs 2>/dev/null
Cache directory: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/ccache
Config file: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated: Mon Jan 29 16:53:30 2024
Local storage:
Cache size (GiB): 0.1 / 5.0 ( 2.59%)
Files: 947
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ cmake --build . --parallel
[0/2] Re-checking globbed directories...
[1/1733] Generating share/nrn/demo/demo.hoc
[2/1733] Generating share/nrn/demo/demo.ses
[3/1733] Generating share/nrn/demo/cycle.hoc
[4/1733] Generating share/nrn/demo/dend3/dend3.nrn
[5/1733] Generating share/nrn/demo/d3init.hoc
[6/1733] Generating share/nrn/demo/dend3.ses
[7/1733] Generating share/nrn/demo/dend3/syn3.hoc
[8/1733] Generating share/nrn/demo/dend3/control.hoc
[9/1733] Generating share/nrn/demo/dynchan.ses
[10/1733] Generating share/nrn/demo/dynclamp.ses
[11/1733] Generating share/nrn/demo/dynclamp.hoc
[12/1733] Generating share/nrn/demo/hh.hoc
[13/1733] Generating share/nrn/demo/hh.ses
[14/1733] Generating share/nrn/demo/nomodel.hoc
[15/1733] Update hh.mod for CoreNEURON compatibility
[16/1733] Generating share/nrn/demo/pyramid.ses
[17/1733] Generating share/nrn/demo/release.ses
[18/1733] Generating share/nrn/demo/pyramid.nrn
[19/1733] Generating share/nrn/demo/reconst.hoc
[20/1733] Generating share/nrn/demo/release/cabpump.mod
[21/1733] Generating share/nrn/demo/release.hoc
[22/1733] Generating share/nrn/demo/release/cachan1.mod
[23/1733] Generating share/nrn/demo/release/capump.mod
[24/1733] Generating share/nrn/demo/release/camchan.mod
[25/1733] Generating share/nrn/demo/release/nacaex.mod
[26/1733] Generating share/nrn/demo/release/invlfire.mod
[27/1733] Generating share/nrn/demo/release/nachan.mod
[28/1733] Generating share/nrn/demo/release/khhchan.mod
[29/1733] Generating share/nrn/demo/release/release.mod
[30/1733] Generating share/nrn/demo/singhh.hoc
[31/1733] Generating share/nrn/demo/singhh.ses
[32/1733] Generating share/nrn/demo/singhhchan.hoc
[33/1733] Generating share/nrn/demo/sync/cell.hoc
[34/1733] Generating share/nrn/demo/sync/demosync.hoc
[35/1733] Generating share/nrn/demo/sync/init.hoc
[36/1733] Generating share/nrn/demo/sync/spkplot.hoc
[37/1733] Generating share/nrn/demo/sync/start.ses
[38/1733] Generating share/nrn/lib/auditscripts/gettarname
[39/1733] Generating share/nrn/demo/sync/synchronize.hoc
[40/1733] Generating share/nrn/demo/testca.hoc
[41/1733] Generating share/nrn/lib/auditscripts/hocaudit.sh
[42/1733] Generating share/nrn/lib/auditscripts/notes
[43/1733] Generating share/nrn/lib/auditscripts/saveaudit
[44/1733] Generating share/nrn/lib/auditscripts/retrieve.sh
[45/1733] Generating share/nrn/lib/cleanup
[46/1733] Generating share/nrn/lib/helpdict
[47/1733] Generating share/nrn/lib/hoc/atoltool.hoc
[48/1733] Generating share/nrn/lib/hoc/binfo.hoc
[49/1733] Generating share/nrn/lib/hoc/attshape.hoc
[50/1733] Generating share/nrn/lib/hoc/celbild.hoc
[51/1733] Generating share/nrn/lib/hoc/celbild/celbild1.hoc
[52/1733] Generating share/nrn/lib/hoc/celbild/celgeom.hoc
[53/1733] Generating share/nrn/lib/hoc/celbild/celmang.hoc
[54/1733] Generating share/nrn/lib/hoc/celbild/celmemb.hoc
[55/1733] Generating share/nrn/lib/hoc/celbild/inhomofn.hoc
[56/1733] Generating share/nrn/lib/hoc/celbild/celtopol.hoc
[57/1733] Generating share/nrn/lib/hoc/celbild/celset.hoc
[58/1733] Generating share/nrn/lib/hoc/chanbild/chanbild1.hoc
[59/1733] Generating share/nrn/lib/hoc/celbild/psubset.hoc
[60/1733] Generating share/nrn/lib/hoc/chanbild.hoc
[61/1733] Generating share/nrn/lib/hoc/chanbild/exp.hoc
[62/1733] Generating share/nrn/lib/hoc/chanbild/const.hoc
[63/1733] Generating share/nrn/lib/hoc/chanbild/gategui.hoc
[64/1733] Generating share/nrn/lib/hoc/chanbild/kschanbg.hoc
[65/1733] Generating share/nrn/lib/hoc/chanbild/ksstate.hoc
[66/1733] Generating share/nrn/lib/hoc/chanbild/ksgate.hoc
[67/1733] Generating share/nrn/lib/hoc/chanbild/kstrans.hoc
[68/1733] Generating share/nrn/lib/hoc/chanbild/kstgui.hoc
[69/1733] Generating share/nrn/lib/hoc/chanbild/linoid.hoc
[70/1733] Generating share/nrn/lib/hoc/chanbild/properties.hoc
[71/1733] Generating share/nrn/lib/hoc/corenrn.hoc
[72/1733] Generating share/nrn/lib/hoc/chanbild/sigmoid.hoc
[73/1733] Generating share/nrn/lib/hoc/chanbild/table.hoc
[74/1733] Generating share/nrn/lib/hoc/electrod.hoc
[75/1733] Generating share/nrn/lib/hoc/gatherv.hoc
[76/1733] Generating share/nrn/lib/hoc/grapher.hoc
[77/1733] Generating share/nrn/lib/hoc/family.hoc
[78/1733] Generating share/nrn/lib/hoc/impedanc.hoc
[79/1733] Generating share/nrn/lib/hoc/funfit.hoc
[80/1733] Generating share/nrn/lib/hoc/impedanx.hoc
[81/1733] Generating share/nrn/lib/hoc/import3d/import3d_gui.hoc
[82/1733] Generating share/nrn/lib/hoc/import3d/import3d_sec.hoc
[83/1733] Generating share/nrn/lib/hoc/import3d.hoc
[84/1733] Generating share/nrn/lib/hoc/import3d/read_morphml.hoc
[85/1733] Generating share/nrn/lib/hoc/import3d/read_nlcda3.hoc
[86/1733] Generating share/nrn/lib/hoc/import3d/read_nlcda.hoc
[87/1733] Generating share/nrn/lib/hoc/import3d/read_nts.hoc
[88/1733] Generating share/nrn/lib/hoc/impratio.hoc
[89/1733] Generating share/nrn/lib/hoc/inserter.hoc
[90/1733] Generating share/nrn/lib/hoc/import3d/read_swc.hoc
[91/1733] Generating share/nrn/lib/hoc/lincir.hoc
[92/1733] Generating share/nrn/lib/hoc/lincir/elmbase.hoc
[93/1733] Generating share/nrn/lib/hoc/lincir/lincir1.hoc
[94/1733] Generating share/nrn/lib/hoc/lincir/lingraph.hoc
[95/1733] Generating share/nrn/lib/hoc/loadbal.hoc
[96/1733] Generating share/nrn/lib/hoc/macload.hoc
[97/1733] Generating share/nrn/lib/hoc/lincir/linmech.hoc
[98/1733] Generating share/nrn/lib/hoc/mkcurve.hoc
[99/1733] Generating share/nrn/lib/hoc/logax.hoc
[100/1733] Generating share/nrn/lib/hoc/mknrndll.hoc
[101/1733] Generating share/nrn/lib/hoc/modlunit.hoc
[102/1733] Generating share/nrn/lib/hoc/mulfit.hoc
[103/1733] Generating share/nrn/lib/hoc/movierun.hoc
[104/1733] Generating share/nrn/lib/hoc/mulfit/clampfit.hoc
[105/1733] Generating share/nrn/lib/hoc/mulfit/e_xy.hoc
[106/1733] Generating share/nrn/lib/hoc/mulfit/e_y.hoc
[107/1733] Generating share/nrn/lib/hoc/mulfit/e_actpot.hoc
[108/1733] Generating share/nrn/lib/hoc/mulfit/eonefunc.hoc
[109/1733] Generating share/nrn/lib/hoc/mulfit/e_norm.hoc
[110/1733] Generating share/nrn/lib/hoc/mulfit/eoneprim.hoc
[111/1733] Generating share/nrn/lib/hoc/mulfit/eparmlst.hoc
[112/1733] Generating share/nrn/lib/hoc/mulfit/mulfit1.hoc
[113/1733] Generating share/nrn/lib/hoc/mulfit/eonerun.hoc
[114/1733] Generating share/nrn/lib/hoc/mview.hoc
[115/1733] Generating share/nrn/lib/hoc/mulfit/optwrap.hoc
[116/1733] Generating share/nrn/lib/hoc/mulfit/protorun.hoc
[117/1733] Generating share/nrn/lib/hoc/mulfit/fitparm.hoc
[118/1733] Generating share/nrn/lib/hoc/mview/allcell.hoc
[119/1733] Generating share/nrn/lib/hoc/mview/allpp.hoc
[120/1733] Generating share/nrn/lib/hoc/mview/artview.hoc
[121/1733] Generating share/nrn/lib/hoc/mview/distinct.hoc
[122/1733] Generating share/nrn/lib/hoc/mview/distinctparm.hoc
[123/1733] Generating share/nrn/lib/hoc/mview/mview1.hoc
[124/1733] Generating help_data.dat
[125/1733] Generating share/nrn/lib/hoc/mview/ncview.hoc
[126/1733] Generating share/nrn/lib/hoc/mview/mviewxml.hoc
[127/1733] Generating share/nrn/lib/hoc/mview/mviewgui.hoc
[128/1733] Generating share/nrn/lib/hoc/mview/parmsets.hoc
[129/1733] Generating share/nrn/lib/hoc/mview/parmvals.hoc
[130/1733] Generating share/nrn/lib/hoc/mview/ppanal.hoc
[131/1733] Generating share/nrn/lib/hoc/mview/rcclasses.hoc
[132/1733] Generating share/nrn/lib/hoc/mview/secanal.hoc
[133/1733] Generating share/nrn/lib/hoc/mview/realcell.hoc
[134/1733] Generating share/nrn/lib/hoc/netbild.hoc
[135/1733] Generating share/nrn/lib/hoc/mview/treeview.hoc
[136/1733] Generating share/nrn/lib/hoc/netbild/artcel.hoc
[137/1733] Generating share/nrn/lib/hoc/netbild/edgegui.hoc
[138/1733] Generating share/nrn/lib/hoc/netbild/grstrlst.hoc
[139/1733] Generating share/nrn/lib/hoc/netbild/netdata.hoc
[140/1733] Generating share/nrn/lib/hoc/netbild/spkplot.hoc
[141/1733] Generating share/nrn/lib/hoc/netbild/netready.hoc
[142/1733] Generating share/nrn/lib/hoc/netbild/netgui.hoc
[143/1733] Generating share/nrn/lib/hoc/netbild/syntypes.hoc
[144/1733] Generating share/nrn/lib/hoc/noload.hoc
[145/1733] Generating share/nrn/lib/hoc/netparmpi.hoc
[146/1733] Generating share/nrn/lib/hoc/nrngui1.hoc
[147/1733] Generating share/nrn/lib/hoc/nrngui.hoc
[148/1733] Generating share/nrn/lib/hoc/parcom.hoc
[149/1733] Generating share/nrn/lib/hoc/pointbsr.hoc
[150/1733] Generating share/nrn/lib/hoc/pointgrp.hoc
[151/1733] Generating share/nrn/lib/hoc/pcchdir.hoc
[152/1733] Generating share/nrn/lib/hoc/pointman.hoc
[153/1733] Generating share/nrn/lib/hoc/prcellstate.hoc
[154/1733] Generating share/nrn/lib/hoc/runfit.hoc
[155/1733] Generating share/nrn/lib/hoc/shapebox.hoc
[156/1733] Generating share/nrn/lib/hoc/showmech.hoc
[157/1733] Generating share/nrn/lib/hoc/single.hoc
[158/1733] Generating share/nrn/lib/hoc/single1.hoc
[159/1733] Generating share/nrn/lib/hoc/stdrun.hoc
[160/1733] Generating share/nrn/lib/hoc/stdgui.hoc
[161/1733] Generating share/nrn/lib/hoc/stdlib.hoc
[162/1733] Generating share/nrn/lib/hoc/vecwrap.hoc
[163/1733] Generating share/nrn/lib/hoc/varmeth1.hoc
[164/1733] Generating share/nrn/lib/hoc/thresh.hoc
[165/1733] Generating share/nrn/lib/hoc/subiter.hoc
[166/1733] Generating share/nrn/lib/hoc/wingroup.hoc
[167/1733] Generating share/nrn/lib/hoc/vplay.hoc
[168/1733] Generating share/nrn/lib/hocload.sh
[169/1733] Generating share/nrn/lib/nrnunits.lib
[170/1733] Generating share/nrn/lib/nrn.defaults.in
[171/1733] Generating share/nrn/lib/python/neuron/__init__.py
[172/1733] Generating share/nrn/lib/prologue.id
[173/1733] Generating share/nrn/lib/python/neuron/coreneuron.py
[174/1733] Generating share/nrn/lib/python/neuron/crxd/__init__.py
[175/1733] Generating share/nrn/lib/python/neuron/config.py
[176/1733] Generating share/nrn/lib/python/neuron/doc.py
[177/1733] Generating share/nrn/lib/python/neuron/expect_hocerr.py
[178/1733] Generating share/nrn/lib/python/neuron/gui2/__init__.py
[179/1733] Generating share/nrn/lib/python/neuron/gui2/config.py
[180/1733] Generating share/nrn/lib/python/neuron/gui2/rangevar.py
[181/1733] Generating share/nrn/lib/python/neuron/gui2/setup_threejs.py
[182/1733] Generating share/nrn/lib/python/neuron/gui.py
[183/1733] Generating share/nrn/lib/python/neuron/gui2/plotshape.py
[184/1733] Generating share/nrn/lib/python/neuron/gui2/utilities.py
[185/1733] Generating share/nrn/lib/python/neuron/hclass3.py
[186/1733] Generating share/nrn/lib/python/neuron/neuroml/biophysics.py
[187/1733] Generating share/nrn/lib/python/neuron/neuroml/__init__.py
[188/1733] Generating share/nrn/lib/python/neuron/neuroml/metadata.py
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[458/1733] Generating ../../share/coreneuron/coreneuron.cpp
[459/1733] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrn_stats.cpp.o
[460/1733] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrnoc_aux.cpp.o
[461/1733] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/__/__/coreneuron/config/config.cpp.o
[462/1733] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/utils.cpp.o
[463/1733] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/randoms/nrnran123.cpp.o
[464/1733] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mpi/core/resolve.cpp.o
[465/1733] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/vrecord.cpp.o
[466/1733] Building CXX object external/nmodl/ext/fmt/CMakeFiles/fmt.dir/src/os.cc.o
[467/1733] -- NMODL : GENERATING AST CLASSES WITH PYTHON GENERATOR! --
[468/1733] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/file_sinks.cpp.o
[469/1733] -- NMODL : GENERATING VERBATIM PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/verbatim.yy:29.1-24: warning: deprecated directive: '%name-prefix "Verbatim_"', use '%define api.prefix {Verbatim_}' [-Wdeprecated]
29 | %name-prefix "Verbatim_"
| ^~~~~~~~~~~~~~~~~~~~~~~~
| %define api.prefix {Verbatim_}
../../../../../external/nmodl/src/parser/verbatim.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
[470/1733] -- NMODL : GENERATING DIFFERENTIAL EQUATION PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/diffeq.yy:56.1-40: warning: deprecated directive: '%define parser_class_name {DiffeqParser}', use '%define api.parser.class {DiffeqParser}' [-Wdeprecated]
56 | %define parser_class_name {DiffeqParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {DiffeqParser}
../../../../../external/nmodl/src/parser/diffeq.yy: warning: 2 shift/reduce conflicts [-Wconflicts-sr]
../../../../../external/nmodl/src/parser/diffeq.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
../../../../../external/nmodl/src/parser/diffeq.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
[471/1733] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/stdout_sinks.cpp.o
[472/1733] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/cfg.cpp.o
[473/1733] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/color_sinks.cpp.o
[474/1733] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/code_printer.cpp.o
[475/1733] -- NMODL : GENERATING UNIT PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/unit.yy:49.1-38: warning: deprecated directive: '%define parser_class_name {UnitParser}', use '%define api.parser.class {UnitParser}' [-Wdeprecated]
49 | %define parser_class_name {UnitParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {UnitParser}
../../../../../external/nmodl/src/parser/unit.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
[476/1733] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/async.cpp.o
[477/1733] -- NMODL : GENERATING C (11) PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/c11.yy:52.1-35: warning: deprecated directive: '%define parser_class_name {CParser}', use '%define api.parser.class {CParser}' [-Wdeprecated]
52 | %define parser_class_name {CParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {CParser}
../../../../../external/nmodl/src/parser/c11.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
[478/1733] Building CXX object external/nmodl/ext/fmt/CMakeFiles/fmt.dir/src/format.cc.o
[479/1733] Linking CXX static library lib/libfmt.a
[480/1733] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/nmodl_printer.cpp.o
[481/1733] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/common_utils.cpp.o
[482/1733] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/file_library.cpp.o
[483/1733] -- NMODL : GENERATING NMODL_CORE PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/nmodl.yy:64.1-39: warning: deprecated directive: '%define parser_class_name {NmodlParser}', use '%define api.parser.class {NmodlParser}' [-Wdeprecated]
64 | %define parser_class_name {NmodlParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {NmodlParser}
../../../../../external/nmodl/src/parser/nmodl.yy: warning: 3 shift/reduce conflicts [-Wconflicts-sr]
../../../../../external/nmodl/src/parser/nmodl.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
../../../../../external/nmodl/src/parser/nmodl.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother]
[484/1733] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/perf_stat.cpp.o
[485/1733] Generating ../../../../lib/nmodl/__init__.py
[486/1733] Generating ../../../../lib/nmodl/ast.py
[487/1733] Generating ../../../../lib/nmodl/dsl.py
[488/1733] Generating ../../../../lib/nmodl/ode.py
[489/1733] Generating ../../../../lib/nmodl/symtab.py
[490/1733] Generating ../../../../lib/nmodl/visitor.py
[491/1733] Generating ../../../../include/newton/newton.hpp
[492/1733] Generating ../../../../include/crout/crout.hpp
[493/1733] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/string_utils.cpp.o
[494/1733] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/__/config/config.cpp.o
[495/1733] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/table_data.cpp.o
[496/1733] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spbuild.cpp.o
[497/1733] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spalloc.cpp.o
[498/1733] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spoutput.cpp.o
[499/1733] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spfactor.cpp.o
[500/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/ACG.cpp.o
[501/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Binomial.cpp.o
[502/1733] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spsolve.cpp.o
[503/1733] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/sputils.cpp.o
[504/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/DiscUnif.cpp.o
[505/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Erlang.cpp.o
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[507/1733] Linking CXX static library lib/libsparse13.a
[508/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/isaac64.cpp.o
[509/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/HypGeom.cpp.o
[510/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Isaac64RNG.cpp.o
[511/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/LogNorm.cpp.o
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[514/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/MLCG.cpp.o
[515/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/NegExp.cpp.o
[516/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnisaac.cpp.o
[517/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Normal.cpp.o
[518/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Poisson.cpp.o
[519/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Rand.cpp.o
[520/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Random.cpp.o
[521/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RndInt.cpp.o
[522/1733] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/spdlog.cpp.o
[523/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RNG.cpp.o
[524/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Uniform.cpp.o
[525/1733] [FLEX][modlunitlexer] Building scanner with flex 2.6.4
[526/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Weibull.cpp.o
[527/1733] Linking CXX static library lib/libspdlog.a
[528/1733] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[529/1733] [FLEX][nocmodllexer] Building scanner with flex 2.6.4
[530/1733] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnran123.cpp.o
[531/1733] Linking CXX static library lib/libnrngnu.a
[532/1733] [BISON][modlunitparser] Building parser with bison 3.8.2
[533/1733] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/json_printer.cpp.o
[534/1733] Generating ../oc/hocusr.h
[535/1733] [BISON][ocparser] Building parser with bison 3.8.2
../src/oc/parse.ypp: warning: 96 shift/reduce conflicts [-Wconflicts-sr]
../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[536/1733] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[537/1733] cd /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[538/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/consist.cpp.o
[539/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/declare.cpp.o
[540/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/init.cpp.o
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[543/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/kinunit.cpp.o
[544/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/nrnunit.cpp.o
[545/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/list.cpp.o
[546/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/passn.cpp.o
[547/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/model.cpp.o
[548/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/symbol.cpp.o
[549/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units.cpp.o
[550/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units1.cpp.o
[551/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/version.cpp.o
[552/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/lex.cpp.o
[553/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/consist.cpp.o
[554/1733] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/parse1.cpp.o
[555/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/deriv.cpp.o
[556/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/init.cpp.o
[557/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/discrete.cpp.o
[558/1733] Linking CXX executable bin/modlunit
[559/1733] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/logger.cpp.o
[560/1733] Linking CXX static library lib/libutil.a
[561/1733] -- NMODL : GENERATING NMODL LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/nmodl.ll:503: warning, -s option given but default rule can be matched
[562/1733] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! --
[563/1733] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/corenrn_parameters.cpp.o
[564/1733] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/diffeq.ll:100: warning, -s option given but default rule can be matched
[565/1733] -- NMODL : GENERATING C(11) LEXER WITH FLEX! --
[566/1733] -- NMODL : GENERATING UNIT LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched
[567/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/io.cpp.o
[568/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/list.cpp.o
[569/1733] Linking CXX static library lib/libcoreneuron-core.a
[570/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/parsact.cpp.o
[571/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/kinetic.cpp.o
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[573/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/nocpout.cpp.o
[574/1733] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_transform_visitor.cpp.o
[575/1733] Building CXX object external/nmodl/src/pybind/CMakeFiles/pywrapper.dir/wrapper.cpp.o
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[642/1733] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/visitor_utils.cpp.o
[643/1733] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/nmodl_visitor.cpp.o
[644/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/netrec_discon.cpp.o
[645/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/simultan.cpp.o
[646/1733] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/symtab_visitor.cpp.o
[647/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/solve.cpp.o
[648/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/symbol.cpp.o
[649/1733] Linking CXX static library lib/libvisitor.a
[650/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/units.cpp.o
[651/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/version.cpp.o
[652/1733] Linking CXX static library lib/libcodegen.a
[653/1733] Generating ../../share/nrn/nrnmain.cpp
[654/1733] Generating ../../include/nrnmpiuse.h
[655/1733] Generating ../../include/nrncvode/nrnneosm.h
[656/1733] Generating ../../include/nrnconf.h
[657/1733] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o
[658/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o
[659/1733] Generating unit_tests/python_unit_tests/test/unit_tests/hoc_python/test_StringFunctions.py
[660/1733] Linking CXX shared library lib/librxdmath.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[661/1733] Generating coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py
[662/1733] Generating nrniv_script.py/do_nothing.py
[663/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o
[664/1733] Generating nrniv_two_scripts.py/do_nothing.py
[665/1733] Generating nrniv_script.py_error/assert_false.py
[666/1733] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o
[667/1733] Generating nrniv_two_scripts.py_error_check_code/assert_false.py
[668/1733] Generating nrniv_two_scripts.py_error_check_output/assert_false.py
[669/1733] Generating nrniv_two_scripts.py_error_check_code/do_nothing.py
[670/1733] Generating nrniv_two_scripts.py_error_check_output/do_nothing.py
[671/1733] Generating nrniv_python_script.py/do_nothing.py
[672/1733] Generating nrniv_python_script.py_error/assert_false.py
[673/1733] Generating nrniv_python_script.py_twice/assert_false.py
[674/1733] Generating nrniv_python_script.py_twice/do_nothing.py
[675/1733] Generating nrniv_python_script.py_args/assert_last_args_are_foo_and_bar.py
[676/1733] Generating nrniv_py3.10_nrnpython_check_sys_path/check_sys_attr.hoc
[677/1733] Generating nrniv_py3.10_python_check_sys_path/check_sys_attr.py
[678/1733] Generating nrniv_py3.10_python_check_sys_path/dump_sys_attr.py
[679/1733] Generating nrniv_py3.10_nrnpython_check_sys_path/dump_sys_attr.py
[680/1733] Generating nrniv_py3.10_python_check_sys_prefix/check_sys_attr.py
[681/1733] Generating nrniv_py3.10_python_check_sys_prefix/dump_sys_attr.py
[682/1733] Generating nrniv_py3.10_nrnpython_check_sys_prefix/check_sys_attr.hoc
[683/1733] Generating nrniv_py3.10_nrnpython_check_sys_prefix/dump_sys_attr.py
[684/1733] Generating nrniv_py3.10_python_check_sys_exec_prefix/check_sys_attr.py
[685/1733] Generating nrniv_py3.10_python_check_sys_exec_prefix/dump_sys_attr.py
[686/1733] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc
[687/1733] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/dump_sys_attr.py
[688/1733] Linking CXX executable bin/nocmodl
[689/1733] Generating nrniv_py3.10_python_check_sys_base_prefix/check_sys_attr.py
[690/1733] Generating nrniv_py3.10_python_check_sys_base_prefix/dump_sys_attr.py
[691/1733] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/check_sys_attr.hoc
[692/1733] Generating ../nrnoc/expsyn.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/expsyn.cpp
Thread Safe
[693/1733] Generating ../nrnoc/exp2syn.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp
Thread Safe
[694/1733] Generating ../nrnoc/apcount.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/apcount.cpp
Thread Safe
[695/1733] Generating ../nrnoc/feature.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/feature.cpp
Notice: VERBATIM blocks are not thread safe
[696/1733] Generating ../nrnoc/hh.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/hh.cpp
Thread Safe
[697/1733] Generating ../nrnoc/intfire2.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/intfire2.cpp
Thread Safe
[698/1733] Generating ../nrnoc/intfire4.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/intfire4.cpp
Thread Safe
[699/1733] Generating ../nrnoc/intfire1.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/intfire1.cpp
Thread Safe
[700/1733] Generating ../nrnoc/netstim.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/netstim.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[701/1733] Generating ../nrnoc/oclmp.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/oclmp.cpp
Thread Safe
[702/1733] Generating ../nrnoc/passive.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/passive.cpp
Thread Safe
[703/1733] Generating ../nrnoc/pattern.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/pattern.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[704/1733] Generating ../nrnoc/ppmark.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/ppmark.cpp
Thread Safe
[705/1733] Generating ../nrnoc/stim.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/stim.cpp
Thread Safe
[706/1733] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/dump_sys_attr.py
[707/1733] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/check_sys_attr.py
[708/1733] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/dump_sys_attr.py
[709/1733] Generating ../nrnoc/svclmp.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/svclmp.cpp
Thread Safe
[710/1733] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc
[711/1733] Generating ../nrnoc/syn.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/syn.cpp
Thread Safe
[712/1733] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py
[713/1733] Generating nrniv_py3.10_python_check_sys_stderr.encoding/check_sys_attr.py
[714/1733] Generating nrniv_py3.10_python_check_sys_stderr.encoding/dump_sys_attr.py
[715/1733] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc
[716/1733] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py
[717/1733] Generating nrniv_py3.10_python_check_sys_stdin.encoding/check_sys_attr.py
[718/1733] Generating ../nrnoc/vclmp.cpp
Translating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/src/nrnoc/vclmp.cpp
Notice: VERBATIM blocks are not thread safe
Notice: LINEAR is not thread safe.
[719/1733] Generating nrniv_py3.10_python_check_sys_stdin.encoding/dump_sys_attr.py
[720/1733] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc
[721/1733] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py
[722/1733] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/bndedval.cpp.o
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[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
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INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn" is shallow and may cause errors
warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
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INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
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INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
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INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:creating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/neuroml
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INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/neuroml
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INFO:root:creating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/tests
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INFO:root:creating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
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INFO:root:creating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
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INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
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INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
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INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:creating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:creating /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:building 'neuron.hoc' extension
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../
ld: warning: -undefined dynamic_lookup may not work with chained fixups
INFO:root:running build_scripts
INFO:root:creating build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755
[1005/1733] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/iovec.cpp.o
[1006/1733] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/generic_data_handle.cpp.o
[1007/1733] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/container.cpp.o
[1008/1733] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"
MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
-> Compiling mod_func.cpp
-> NMODL ../cabpump.mod
-> NMODL ../cachan1.mod
-> NMODL ../camchan.mod
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Thread Safe
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Translating camchan.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
-> NMODL ../capump.mod
-> NMODL ../invlfire.mod
Thread Safe
-> NMODL ../khhchan.mod
Translating capump.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
Thread Safe
Thread Safe
-> NMODL ../nachan.mod
-> NMODL ../nacaex.mod
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
-> NMODL ../release.mod
Translating nachan.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
Thread Safe
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
-> Compiling cabpump.cpp
-> Compiling cachan1.cpp
Translating release.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
Thread Safe
-> Compiling camchan.cpp
-> Compiling capump.cpp
-> Compiling invlfire.cpp
-> Compiling khhchan.cpp
-> Compiling nacaex.cpp
-> Compiling nachan.cpp
-> Compiling release.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1009/1733] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/utils/enumerate.cpp.o
[1010/1733] Building CXX object test/coreneuron/unit/cmdline_interface/CMakeFiles/cmd_interface_test_bin.dir/test_cmdline_interface.cpp.o
[1011/1733] Building CXX object test/coreneuron/unit/interleave_info/CMakeFiles/interleave_info_bin.dir/check_constructors.cpp.o
[1012/1733] Linking CXX executable bin/cmd_interface_test_bin
[1013/1733] Linking CXX executable bin/interleave_info_bin
[1014/1733] Building CXX object test/coreneuron/unit/alignment/CMakeFiles/alignment_test_bin.dir/alignment.cpp.o
[1015/1733] Building CXX object test/coreneuron/unit/queueing/CMakeFiles/queuing_test_bin.dir/test_queueing.cpp.o
[1016/1733] Linking CXX executable bin/alignment_test_bin
[1017/1733] Generating nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/mcna.mod
[1018/1733] Linking CXX executable bin/queuing_test_bin
[1019/1733] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/follower.mod
[1020/1733] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/gap.mod
[1021/1733] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/name_clashes.mod
[1022/1733] Building CXX object test/coreneuron/unit/lfp/CMakeFiles/lfp_test_bin.dir/lfp.cpp.o
[1023/1733] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/unitstest.mod
[1024/1733] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/version_macros.mod
[1025/1733] Linking CXX executable bin/lfp_test_bin
[1026/1733] Generating nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/opaque_token.mod
[1027/1733] Generating nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/ptr.mod
[1028/1733] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/mechanism.cpp.o
[1029/1733] Generating nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/ppxsrc.mod
[1030/1733] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/oc/hoc_interpreter.cpp.o
[1031/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/argpass.mod
[1032/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cabpump.mod
[1033/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cachan.mod
[1034/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacum.mod
[1035/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacur.mod
[1036/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadif.mod
[1037/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadifusl.mod
[1038/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagk.mod
[1039/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagkftab.mod
[1040/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/capmp.mod
[1041/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/expsynspine.mod
[1042/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fh.mod
[1043/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fit1.mod
[1044/1733] Building special[-core] for test group datahandle
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453
cfiles =
Mod files: "./opaque_token.mod" "./ptr.mod"
MODOBJS= ./opaque_token.o ./ptr.o
-> Compiling mod_func.cpp
-> NMODL .././opaque_token.mod
-> NMODL .././ptr.mod
Translating ptr.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp
Translating opaque_token.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
-> Compiling opaque_token.cpp
-> Compiling ptr.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1045/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/gap.mod
[1046/1733] Generating datahandle/datahandle_tests/test/datahandle/test_1.py
[1047/1733] Generating datahandle/datahandle_tests/test/datahandle/test_token.py
[1048/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hh1.mod
[1049/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hhvect.mod
[1050/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/inatest.mod
[1051/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod
[1052/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod
[1053/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod
[1054/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod
[1055/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod
[1056/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod
[1057/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod
[1058/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod
[1059/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod
[1060/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc
[1061/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod
[1062/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod
[1063/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod
[1064/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod
[1065/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod
[1066/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod
[1067/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod
[1068/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod
[1069/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod
[1070/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod
[1071/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod
[1072/1733] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod
[1073/1733] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/atest.mod
[1074/1733] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata.inc
[1075/1733] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata.mod
[1076/1733] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_pp.mod
[1077/1733] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_ppts.mod
[1078/1733] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_ts.mod
[1079/1733] Building special[-core] for test group coverage_tests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51
cfiles =
Mod files: "./ppxsrc.mod"
MODOBJS= ./ppxsrc.o
-> Compiling mod_func.cpp
-> NMODL .././ppxsrc.mod
Translating ppxsrc.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
Thread Safe
-> Compiling ppxsrc.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1080/1733] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json
[1081/1733] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py
[1082/1733] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod
[1083/1733] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod
[1084/1733] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod
[1085/1733] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod
[1086/1733] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod
[1087/1733] Building CXX object test/coreneuron/unit/solver/CMakeFiles/test-solver.dir/test_solver.cpp.o
[1088/1733] Linking CXX executable bin/test-solver
[1089/1733] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod
[1090/1733] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod
[1091/1733] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod
[1092/1733] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod
[1093/1733] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod
[1094/1733] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod
[1095/1733] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod
[1096/1733] Building special[-core] for test group pytest
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c
cfiles =
Mod files: "./mcna.mod"
MODOBJS= ./mcna.o
-> Compiling mod_func.cpp
-> NMODL .././mcna.mod
Translating mcna.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
Thread Safe
-> Compiling mcna.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1097/1733] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json
[1098/1733] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py
[1099/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial.inc
[1100/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial.mod
[1101/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial_pp.mod
[1102/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/bacur.mod
[1103/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/banocur.mod
[1104/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/fornetcon.mod
[1105/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/invlfire.mod
[1106/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/natrans.mod
[1107/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/netmove.mod
[1108/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/sample.mod
[1109/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/unitstest.mod
[1110/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/version_macros.mod
[1111/1733] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/watchrange.mod
[1112/1733] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/benchmarks/threads/test_multicore.cpp.o
[1113/1733] Generating nrniv_py3.10_python_check_sys_stdout.encoding/check_sys_attr.py
[1114/1733] Generating nrniv_py3.10_python_check_sys_stdout.encoding/dump_sys_attr.py
[1115/1733] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc
[1116/1733] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py
[1117/1733] Generating nrniv_pydef_python_check_sys_path/check_sys_attr.py
[1118/1733] Generating nrniv_pydef_python_check_sys_path/dump_sys_attr.py
[1119/1733] Generating nrniv_pydef_nrnpython_check_sys_path/check_sys_attr.hoc
[1120/1733] Generating nrniv_pydef_nrnpython_check_sys_path/dump_sys_attr.py
[1121/1733] Generating nrniv_pydef_python_check_sys_prefix/check_sys_attr.py
[1122/1733] Generating nrniv_pydef_python_check_sys_prefix/dump_sys_attr.py
[1123/1733] Generating nrniv_pydef_nrnpython_check_sys_prefix/check_sys_attr.hoc
[1124/1733] Generating nrniv_pydef_nrnpython_check_sys_prefix/dump_sys_attr.py
[1125/1733] Generating nrniv_pydef_python_check_sys_exec_prefix/check_sys_attr.py
[1126/1733] Generating nrniv_pydef_python_check_sys_exec_prefix/dump_sys_attr.py
[1127/1733] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc
[1128/1733] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/dump_sys_attr.py
[1129/1733] Generating nrniv_pydef_python_check_sys_base_prefix/check_sys_attr.py
[1130/1733] Generating nrniv_pydef_python_check_sys_base_prefix/dump_sys_attr.py
[1131/1733] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/check_sys_attr.hoc
[1132/1733] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/dump_sys_attr.py
[1133/1733] Generating nrniv_pydef_python_check_sys_base_exec_prefix/check_sys_attr.py
[1134/1733] Generating nrniv_pydef_python_check_sys_base_exec_prefix/dump_sys_attr.py
[1135/1733] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc
[1136/1733] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py
[1137/1733] Generating nrniv_pydef_python_check_sys_stderr.encoding/check_sys_attr.py
[1138/1733] Generating nrniv_pydef_python_check_sys_stderr.encoding/dump_sys_attr.py
[1139/1733] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc
[1140/1733] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py
[1141/1733] Generating nrniv_pydef_python_check_sys_stdin.encoding/check_sys_attr.py
[1142/1733] Generating nrniv_pydef_python_check_sys_stdin.encoding/dump_sys_attr.py
[1143/1733] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc
[1144/1733] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py
[1145/1733] Generating nrniv_pydef_python_check_sys_stdout.encoding/check_sys_attr.py
[1146/1733] Generating nrniv_pydef_python_check_sys_stdout.encoding/dump_sys_attr.py
[1147/1733] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc
[1148/1733] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py
[1149/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod
[1150/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod
[1151/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
[1152/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
[1153/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod
[1154/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod
[1155/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
[1156/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod
[1157/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
[1158/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
[1159/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
[1160/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod
[1161/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
[1162/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod
[1163/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod
[1164/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod
[1165/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod
[1166/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod
[1167/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod
[1168/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod
[1169/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod
[1170/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
[1171/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod
[1172/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
[1173/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod
[1174/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod
[1175/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod
[1176/1733] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod
[1177/1733] Building special[-core] for test group parallel
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"
MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
-> Compiling mod_func.cpp
-> NMODL .././follower.mod
-> NMODL .././gap.mod
-> NMODL .././name_clashes.mod
Translating follower.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Thread Safe
Translating gap.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
Thread Safe
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
Thread Safe
-> NMODL .././unitstest.mod
-> NMODL .././version_macros.mod
-> Compiling follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
Thread Safe
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
Thread Safe
-> Compiling gap.cpp
-> Compiling name_clashes.cpp
-> Compiling unitstest.cpp
-> Compiling version_macros.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1178/1733] Generating parallel/subworld/test/parallel_tests/test_subworld.py
[1179/1733] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py
[1180/1733] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py
[1181/1733] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py
[1182/1733] Generating parallel/bas/test/parallel_tests/test_bas.py
[1183/1733] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py
[1184/1733] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json
[1185/1733] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py
[1186/1733] Generating ../../compare_test_results.py
[1187/1733] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod
[1188/1733] Building special[-core] for test group hoctests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f
cfiles =
Mod files: "./atest.mod" "./sdata.mod" "./sdata_pp.mod" "./sdata_ppts.mod" "./sdata_ts.mod"
MODOBJS= ./atest.o ./sdata.o ./sdata_pp.o ./sdata_ppts.o ./sdata_ts.o
-> Compiling mod_func.cpp
-> NMODL .././atest.mod
-> NMODL .././sdata.mod
-> NMODL .././sdata_pp.mod
Translating sdata.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata.cpp
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Translating sdata_pp.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_pp.cpp
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Translating atest.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/atest.cpp
Thread Safe
-> NMODL .././sdata_ts.mod
-> NMODL .././sdata_ppts.mod
Translating sdata_ts.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_ts.cpp
INCLUDEing sdata.inc
Thread Safe
Translating sdata_ppts.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_ppts.cpp
INCLUDEing sdata.inc
Thread Safe
-> Compiling atest.cpp
-> Compiling sdata.cpp
-> Compiling sdata_pp.cpp
-> Compiling sdata_ppts.cpp
-> Compiling sdata_ts.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1189/1733] Generating hoctests/test_loadbal_hoc/expect_err.hoc
[1190/1733] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc
[1191/1733] Generating hoctests/perf1_hoc/expect_err.hoc
[1192/1733] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc
[1193/1733] Generating hoctests/test1_hoc/expect_err.hoc
[1194/1733] Generating hoctests/test1_hoc/vardimtests/test1.hoc
[1195/1733] Generating hoctests/test2_hoc/expect_err.hoc
[1196/1733] Generating hoctests/test2_hoc/vardimtests/test2.hoc
[1197/1733] Generating hoctests/test3_hoc/expect_err.hoc
[1198/1733] Generating hoctests/test3_hoc/vardimtests/test3.hoc
[1199/1733] Generating hoctests/test4_hoc/expect_err.hoc
[1200/1733] Generating hoctests/test4_hoc/vardimtests/test4.hoc
[1201/1733] Generating hoctests/test5_hoc/expect_err.hoc
[1202/1733] Generating hoctests/test5_hoc/vardimtests/test5.hoc
[1203/1733] Generating hoctests/test6_hoc/expect_err.hoc
[1204/1733] Generating hoctests/test6_hoc/vardimtests/test6.hoc
[1205/1733] Generating hoctests/test7_hoc/expect_err.hoc
[1206/1733] Generating hoctests/test7_hoc/vardimtests/test7.hoc
[1207/1733] Generating hoctests/test8_hoc/expect_err.hoc
[1208/1733] Generating hoctests/test8_hoc/vardimtests/test8.hoc
[1209/1733] Generating hoctests/test9_hoc/expect_err.hoc
[1210/1733] Generating hoctests/test9_hoc/vardimtests/test9.hoc
[1211/1733] Generating hoctests/test_cvinterp_py/tests/test_cvinterp.py
[1212/1733] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py
[1213/1733] Generating hoctests/test_kschan_py/tests/test_kschan.json
[1214/1733] Generating hoctests/test_kschan_py/tests/test_kschan.py
[1215/1733] Generating hoctests/test_mechfunc_py/tests/test_mechfunc.py
[1216/1733] Generating hoctests/test_mode_py/tests/test_mode.py
[1217/1733] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json
[1218/1733] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py
[1219/1733] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py
[1220/1733] Generating hoctests/test_setdata_py/tests/test_setdata.py
[1221/1733] Generating hoctests/test_shape_py/tests/test_shape.py
[1222/1733] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py
[1223/1733] Generating hoctests/test1_py/vardimtests/test1.py
[1224/1733] Generating hoctests/test2_py/vardimtests/test2.py
[1225/1733] Generating hoctests/test9_py/vardimtests/test9.py
[1226/1733] Generating ../tests/ringtest/reference_data/spk1.100ms.std.ref
[1227/1733] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
[1228/1733] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod
[1229/1733] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod
[1230/1733] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod
[1231/1733] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod
[1232/1733] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
[1233/1733] Building special[-core] for test group nmodl_tests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5
cfiles =
Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod"
MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o
-> Compiling mod_func.cpp
-> NMODL .././cadif.mod
-> NMODL .././disc.mod
-> NMODL .././fornetcon.mod
Translating disc.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
Notice: DISCRETE is not thread safe.
Notice: This mechanism cannot be used with CVODE
-> NMODL .././hhwatch.mod
Translating cadif.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Thread Safe
-> NMODL .././k3st.mod
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
Thread Safe
-> NMODL .././table.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
Thread Safe
-> NMODL .././variabletypes.mod
Translating k3st.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
NEURON's CVode method ignores conservation
Thread Safe
-> Compiling cadif.cpp
Translating table.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
Thread Safe
Translating variabletypes.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
Thread Safe
-> Compiling disc.cpp
-> Compiling fornetcon.cpp
-> Compiling hhwatch.cpp
-> Compiling k3st.cpp
-> Compiling table.cpp
-> Compiling variabletypes.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1234/1733] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/node.cpp.o
[1235/1733] Generating nmodl_tests/test_table/test/nmodl/test_table.py
[1236/1733] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py
[1237/1733] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py
[1238/1733] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py
[1239/1733] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py
[1240/1733] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py
[1241/1733] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py
[1242/1733] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py
[1243/1733] Generating ../tests/testcorenrn/reference/out_bbcore.spk
[1244/1733] Generating ../tests/testcorenrn/reference/out_conc.spk
[1245/1733] Generating ../tests/testcorenrn/reference/out_deriv.spk
[1246/1733] Generating ../tests/testcorenrn/reference/out_gf.spk
[1247/1733] Generating ../tests/testcorenrn/reference/out_kin.spk
[1248/1733] Generating ../tests/testcorenrn/reference/out_vecplay.spk
[1249/1733] Generating ../tests/testcorenrn/reference/out_patstim.spk
[1250/1733] Generating ../tests/testcorenrn/reference/out_vecevent.spk
[1251/1733] Generating ../tests/testcorenrn/reference/out_watch.spk
[1252/1733] Generating ../tests/testcorenrn/reference/out_netstimdirect.spk
[1253/1733] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfire.mod
[1254/1733] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfirestats.mod
[1255/1733] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfiresha.mod
[1256/1733] Building special[-core] for test group pytest_coreneuron
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"
MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/follower.mod
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gap.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/name_clashes.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././follower.mod
-> NMODL .././gap.mod
-> NMODL .././name_clashes.mod
Translating gap.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
Translating follower.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Thread Safe
Thread Safe
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
Thread Safe
-> NMODL .././unitstest.mod
-> NMODL .././version_macros.mod
-> Compiling follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
Thread Safe
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
Thread Safe
-> Compiling gap.cpp
-> Compiling name_clashes.cpp
-> Compiling unitstest.cpp
-> Compiling version_macros.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1257/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py
[1258/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py
[1259/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py
[1260/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py
[1261/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py
[1262/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py
[1263/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py
[1264/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py
[1265/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py
[1266/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py
[1267/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py
[1268/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py
[1269/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py
[1270/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py
[1271/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json
[1272/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py
[1273/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py
[1274/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py
[1275/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py
[1276/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py
[1277/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py
[1278/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py
[1279/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py
[1280/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py
[1281/1733] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py
[1282/1733] Building special[-core] for test group external_ringtest
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff
cfiles =
Mod files: "./halfgap.mod"
MODOBJS= ./halfgap.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/halfgap.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running cnexp visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
Thread Safe
-> Compiling halfgap.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1283/1733] Generating ../../external_ringtest/neuron/args.py
[1284/1733] Generating ../../external_ringtest/neuron/celluniform.hoc
[1285/1733] Generating ../../external_ringtest/neuron/cell.hoc
[1286/1733] Generating ../../external_ringtest/neuron/commonutils.py
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[1288/1733] Generating ../../external_ringtest/neuron/ring.py
[1289/1733] Generating ../../external_ringtest/neuron/ringtest.py
[1290/1733] Generating ../../external_ringtest/neuron/ringuniform.py
[1291/1733] Generating ../../external_ringtest/neuron/settings.py
[1292/1733] Generating ../../external_ringtest/neuron_mpi/args.py
[1293/1733] Generating ../../external_ringtest/neuron_mpi/cell.hoc
[1294/1733] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc
[1295/1733] Generating ../../external_ringtest/neuron_mpi/commonutils.py
[1296/1733] Generating ../../external_ringtest/neuron_mpi/ranparm.py
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[1298/1733] Generating ../../external_ringtest/neuron_mpi/ringuniform.py
[1299/1733] Generating ../../external_ringtest/neuron_mpi/ringtest.py
[1300/1733] Generating ../../external_ringtest/neuron_mpi/settings.py
[1301/1733] Generating ../../external_ringtest/neuron_mpi_python/args.py
[1302/1733] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc
[1303/1733] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc
[1304/1733] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py
[1305/1733] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py
[1306/1733] Generating ../../external_ringtest/neuron_mpi_python/ring.py
[1307/1733] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py
[1308/1733] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py
[1309/1733] Generating ../../external_ringtest/neuron_mpi_python/settings.py
[1310/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py
[1311/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc
[1312/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc
[1313/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py
[1314/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py
[1315/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py
[1316/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py
[1317/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py
[1318/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py
[1319/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py
[1320/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc
[1321/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc
[1322/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py
[1323/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py
[1324/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py
[1325/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py
[1326/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py
[1327/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py
[1328/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py
[1329/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc
[1330/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc
[1331/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py
[1332/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py
[1333/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py
[1334/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py
[1335/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py
[1336/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py
[1337/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py
[1338/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc
[1339/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc
[1340/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py
[1341/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py
[1342/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py
[1343/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py
[1344/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py
[1345/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py
[1346/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py
[1347/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc
[1348/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc
[1349/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py
[1350/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py
[1351/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py
[1352/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py
[1353/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py
[1354/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py
[1355/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py
[1356/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py
[1357/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc
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[1359/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py
[1360/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py
[1361/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py
[1362/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py
[1363/1733] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py
[1364/1733] Building CXX object test/CMakeFiles/testneuron.dir/common/catch2_main.cpp.o
[1365/1733] Linking CXX executable bin/test/testneuron
[1366/1733] Building special[-core] for test group tqperf
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951
cfiles =
Mod files: "./invlfire.mod" "./invlfiresha.mod" "./invlfirestats.mod"
MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build INCFLAGS=-I/opt/homebrew/Cellar/openssl@3/3.2.0_1/include LINKFLAGS=/opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfire.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfiresha.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfirestats.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
arm64/corenrn/mod2c/invlfiresha.cpp:308:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations]
int status = SHA1_Init((SHA_CTX*)(*ctx));
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
# define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0)
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
# define OSSL_DEPRECATED(since) __attribute__((deprecated))
^
arm64/corenrn/mod2c/invlfiresha.cpp:313:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations]
int status = SHA1_Update((SHA_CTX*)ctx, data, len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
# define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0)
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
# define OSSL_DEPRECATED(since) __attribute__((deprecated))
^
arm64/corenrn/mod2c/invlfiresha.cpp:324:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations]
int status = SHA1_Final(u.md, (SHA_CTX*)ctx);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
# define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0)
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
# define OSSL_DEPRECATED(since) __attribute__((deprecated))
^
3 warnings generated.
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././invlfire.mod
-> NMODL .././invlfiresha.mod
-> NMODL .././invlfirestats.mod
Translating invlfiresha.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp
Translating invlfirestats.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
-> Compiling invlfiresha.cpp
-> Compiling invlfirestats.cpp
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
-> Compiling invlfire.cpp
invlfiresha.cpp:358:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations]
int status = SHA1_Init((SHA_CTX*)(*ctx));
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
# define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0)
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
# define OSSL_DEPRECATED(since) __attribute__((deprecated))
^
invlfiresha.cpp:363:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations]
int status = SHA1_Update((SHA_CTX*)ctx, data, len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
# define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0)
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
# define OSSL_DEPRECATED(since) __attribute__((deprecated))
^
invlfiresha.cpp:374:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations]
int status = SHA1_Final(u.md, (SHA_CTX*)ctx);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
# define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0)
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
# define OSSL_DEPRECATED(since) __attribute__((deprecated))
^
3 warnings generated.
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1367/1733] Generating ../../tqperf/coreneuron_special/extracell.hoc
[1368/1733] Generating ../../tqperf/coreneuron_special/init.hoc
[1369/1733] Generating ../../tqperf/coreneuron_special/invl.hoc
[1370/1733] Generating ../../tqperf/coreneuron_special/mosinit.hoc
[1371/1733] Generating ../../tqperf/coreneuron_special/movie.hoc
[1372/1733] Generating ../../tqperf/coreneuron_special/net.hoc
[1373/1733] Generating ../../tqperf/coreneuron_special/param.hoc
[1374/1733] Generating ../../tqperf/coreneuron_special/randist.hoc
[1375/1733] Generating ../../tqperf/coreneuron_special/perfrun.hoc
[1376/1733] Generating ../../tqperf/coreneuron_special/pltq.hoc
[1377/1733] Generating ../../tqperf/coreneuron_special/run.hoc
[1378/1733] Generating ../../tqperf/coreneuron_special/run128.hoc
[1379/1733] Generating ../../tqperf/coreneuron_special/runs.hoc
[1380/1733] Generating ../../tqperf/coreneuron_special/spike2file.hoc
[1381/1733] Generating ../../tqperf/coreneuron_special/spkplt.hoc
[1382/1733] Generating ../../tqperf/coreneuron_special/table.hoc
[1383/1733] Generating ../../tqperf/coreneuron_special/test1.py
[1384/1733] Generating ../../tqperf/coreneuron_python/extracell.hoc
[1385/1733] Generating ../../tqperf/coreneuron_special/tperf.hoc
[1386/1733] Generating ../../tqperf/coreneuron_special/tperfnew.hoc
[1387/1733] Generating ../../tqperf/coreneuron_python/invl.hoc
[1388/1733] Generating ../../tqperf/coreneuron_python/init.hoc
[1389/1733] Generating ../../tqperf/coreneuron_python/mosinit.hoc
[1390/1733] Generating ../../tqperf/coreneuron_python/movie.hoc
[1391/1733] Generating ../../tqperf/coreneuron_python/net.hoc
[1392/1733] Generating ../../tqperf/coreneuron_python/param.hoc
[1393/1733] Generating ../../tqperf/coreneuron_python/perfrun.hoc
[1394/1733] Generating ../../tqperf/coreneuron_python/randist.hoc
[1395/1733] Generating ../../tqperf/coreneuron_python/run.hoc
[1396/1733] Generating ../../tqperf/coreneuron_python/pltq.hoc
[1397/1733] Generating ../../tqperf/coreneuron_python/run128.hoc
[1398/1733] Generating ../../tqperf/coreneuron_python/runs.hoc
[1399/1733] Generating ../../tqperf/coreneuron_python/spike2file.hoc
[1400/1733] Generating ../../tqperf/coreneuron_python/spkplt.hoc
[1401/1733] Generating ../../tqperf/coreneuron_python/table.hoc
[1402/1733] Generating ../../tqperf/coreneuron_python/test1.py
[1403/1733] Generating ../../tqperf/coreneuron_python/tperf.hoc
[1404/1733] Generating ../../tqperf/coreneuron_python/tperfnew.hoc
[1405/1733] Building special[-core] for test group coreneuron_modtests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30
cfiles =
Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod"
MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./invlfire.o ./natrans.o ./netmove.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial_pp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial.mod
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bacur.mod
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/banocur.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/fornetcon.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/natrans.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfire.mod
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netmove.mod
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/sample.mod
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/watchrange.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././axial.mod
-> NMODL .././axial_pp.mod
-> NMODL .././bacur.mod
Translating bacur.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/bacur.cpp
Thread Safe
Translating axial.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/axial.cpp
INCLUDEing axial.inc
Thread Safe
Translating axial_pp.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/axial_pp.cpp
INCLUDEing axial.inc
-> NMODL .././banocur.mod
-> NMODL .././fornetcon.mod
Thread Safe
-> NMODL .././invlfire.mod
Translating banocur.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/banocur.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/fornetcon.cpp
Thread Safe
-> NMODL .././natrans.mod
-> NMODL .././netmove.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/invlfire.cpp
Thread Safe
-> NMODL .././sample.mod
Translating netmove.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/netmove.cpp
Thread Safe
Translating natrans.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/natrans.cpp
Thread Safe
-> NMODL .././unitstest.mod
-> NMODL .././version_macros.mod
Translating sample.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/sample.cpp
Thread Safe
-> NMODL .././watchrange.mod
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/unitstest.cpp
Thread Safe
-> Compiling axial.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/version_macros.cpp
Thread Safe
-> Compiling axial_pp.cpp
Translating watchrange.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/watchrange.cpp
Thread Safe
-> Compiling bacur.cpp
-> Compiling banocur.cpp
-> Compiling fornetcon.cpp
-> Compiling invlfire.cpp
-> Compiling natrans.cpp
-> Compiling netmove.cpp
-> Compiling sample.cpp
-> Compiling unitstest.cpp
-> Compiling version_macros.cpp
-> Compiling watchrange.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1406/1733] Generating coreneuron_modtests/inputpresyn_py/test/coreneuron/test_inputpresyn.py
[1407/1733] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py
[1408/1733] Generating coreneuron_modtests/version_macros/test/pytest_coreneuron/test_version_macros.py
[1409/1733] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc
[1410/1733] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py
[1411/1733] Generating coreneuron_modtests/fast_imem_py_cpu/test/pytest_coreneuron/test_fast_imem.py
[1412/1733] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1413/1733] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py
[1414/1733] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py
[1415/1733] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py
[1416/1733] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py
[1417/1733] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py
[1418/1733] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py
[1419/1733] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py
[1420/1733] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py
[1421/1733] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py
[1422/1733] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py
[1423/1733] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1424/1733] Building special[-core] for test group testcorenrn_bbcore
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876
cfiles =
Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod"
MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhderiv.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhkin.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhwatch.mod
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse
[NMODL] [info] :: Running sympy solve visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nacum.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././Gfluct3.mod
-> NMODL .././hhderiv.mod
-> NMODL .././hhkin.mod
Translating hhkin.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
Translating hhderiv.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
Thread Safe
Thread Safe
Thread Safe
-> NMODL .././hhwatch.mod
-> NMODL .././nacum.mod
-> NMODL .././vecevent.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
Thread Safe
Translating nacum.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
Thread Safe
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
-> Compiling Gfluct3.cpp
-> Compiling hhderiv.cpp
-> Compiling hhkin.cpp
-> Compiling hhwatch.cpp
-> Compiling nacum.cpp
-> Compiling vecevent.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1425/1733] Generating ../../testcorenrn_bbcore/neuron/common.hoc
[1426/1733] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc
[1427/1733] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc
[1428/1733] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc
[1429/1733] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc
[1430/1733] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc
[1431/1733] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc
[1432/1733] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1433/1733] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc
[1434/1733] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc
[1435/1733] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc
[1436/1733] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc
[1437/1733] Generating ../../testcorenrn_conc/neuron/common.hoc
[1438/1733] Generating ../../testcorenrn_conc/neuron/defvar.hoc
[1439/1733] Generating ../../testcorenrn_conc/neuron/testconc.hoc
[1440/1733] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc
[1441/1733] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc
[1442/1733] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc
[1443/1733] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1444/1733] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc
[1445/1733] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc
[1446/1733] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc
[1447/1733] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc
[1448/1733] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc
[1449/1733] Generating ../../testcorenrn_deriv/neuron/common.hoc
[1450/1733] Generating ../../testcorenrn_deriv/neuron/defvar.hoc
[1451/1733] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc
[1452/1733] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc
[1453/1733] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc
[1454/1733] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc
[1455/1733] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc
[1456/1733] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1457/1733] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc
[1458/1733] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc
[1459/1733] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc
[1460/1733] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc
[1461/1733] Generating ../../testcorenrn_gf/neuron/common.hoc
[1462/1733] Generating ../../testcorenrn_gf/neuron/testgf.hoc
[1463/1733] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc
[1464/1733] Generating ../../testcorenrn_gf/neuron/defvar.hoc
[1465/1733] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc
[1466/1733] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc
[1467/1733] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc
[1468/1733] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1469/1733] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc
[1470/1733] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc
[1471/1733] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc
[1472/1733] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc
[1473/1733] Generating ../../testcorenrn_kin/neuron/common.hoc
[1474/1733] Generating ../../testcorenrn_kin/neuron/defvar.hoc
[1475/1733] Generating ../../testcorenrn_kin/neuron/testkin.hoc
[1476/1733] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc
[1477/1733] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc
[1478/1733] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1479/1733] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc
[1480/1733] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc
[1481/1733] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc
[1482/1733] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc
[1483/1733] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc
[1484/1733] Generating ../../testcorenrn_patstim/neuron/defvar.hoc
[1485/1733] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc
[1486/1733] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc
[1487/1733] Generating ../../testcorenrn_patstim/neuron/common.hoc
[1488/1733] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc
[1489/1733] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc
[1490/1733] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc
[1491/1733] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc
[1492/1733] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc
[1493/1733] Generating ../../testcorenrn_vecplay/neuron/common.hoc
[1494/1733] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc
[1495/1733] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc
[1496/1733] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc
[1497/1733] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc
[1498/1733] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc
[1499/1733] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1500/1733] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc
[1501/1733] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc
[1502/1733] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc
[1503/1733] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc
[1504/1733] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc
[1505/1733] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc
[1506/1733] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc
[1507/1733] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc
[1508/1733] Generating ../../testcorenrn_vecevent/neuron/common.hoc
[1509/1733] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc
[1510/1733] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1511/1733] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc
[1512/1733] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc
[1513/1733] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc
[1514/1733] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc
[1515/1733] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc
[1516/1733] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc
[1517/1733] Generating ../../testcorenrn_watch/neuron/common.hoc
[1518/1733] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc
[1519/1733] Generating ../../testcorenrn_watch/neuron/defvar.hoc
[1520/1733] Generating ../../testcorenrn_watch/neuron/testwatch.hoc
[1521/1733] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc
[1522/1733] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc
[1523/1733] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc
[1524/1733] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc
[1525/1733] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1526/1733] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc
[1527/1733] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc
[1528/1733] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc
[1529/1733] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc
[1530/1733] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc
[1531/1733] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc
[1532/1733] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc
[1533/1733] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc
[1534/1733] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc
[1535/1733] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc
[1536/1733] Building special[-core] for test group example_nmodl
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2
cfiles =
Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod"
MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o
-> Compiling mod_func.cpp
-> NMODL .././argpass.mod
-> NMODL .././cabpump.mod
-> NMODL .././cachan.mod
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
Translating argpass.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
Notice: VERBATIM blocks are not thread safe
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Translating cachan.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
Thread Safe
-> NMODL .././cacum.mod
-> NMODL .././cacur.mod
-> NMODL .././cadif.mod
Translating cacur.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
Thread Safe
Translating cacum.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
Thread Safe
-> NMODL .././cadifusl.mod
-> NMODL .././cagk.mod
Translating cadif.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
Thread Safe
-> NMODL .././cagkftab.mod
Translating cadifusl.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Translating cagk.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
Thread Safe
-> NMODL .././capmp.mod
-> NMODL .././expsynspine.mod
Translating cagkftab.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
Thread Safe
-> NMODL .././fh.mod
Translating capmp.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
NEURON's CVode method ignores conservation
Thread Safe
Translating expsynspine.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
Notice: LINEAR is not thread safe.
-> NMODL .././fit1.mod
-> NMODL .././gap.mod
Translating fh.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
INCLUDEing standard.inc
Notice: Assignment to the GLOBAL variable, "inf", is not thread safe
Notice: Assignment to the GLOBAL variable, "tau", is not thread safe
-> NMODL .././hh1.mod
Translating fit1.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
Notice: VERBATIM blocks are not thread safe
Translating gap.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
Notice: Use of POINTER is not thread safe.
-> NMODL .././hhvect.mod
-> NMODL .././inatest.mod
Translating hh1.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp
Notice: This mechanism cannot be used with CVODE
Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe
Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "minf", is not thread safe
Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
Translating hhvect.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
-> NMODL .././ionleak.mod
Translating inatest.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp
Thread Safe
-> NMODL .././nacum.mod
-> NMODL .././nacur.mod
Translating ionleak.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp
Thread Safe
Translating nacum.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp
Thread Safe
-> NMODL .././nadifl.mod
Translating nacur.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp
Thread Safe
-> NMODL .././nonlin.mod
-> NMODL .././obj_ex.mod
Translating nadifl.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp
Thread Safe
-> NMODL .././order.mod
Translating nonlin.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp
Notice: NONLINEAR is not thread safe.
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
-> NMODL .././passiv.mod
Translating obj_ex.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp
Thread Safe
-> NMODL .././rchan.mod
Translating passiv.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp
Thread Safe
-> NMODL .././stim1.mod
Translating order.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp
Thread Safe
-> NMODL .././str.mod
Translating rchan.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp
Notice: normrand is not thread safe
Notice: This mechanism cannot be used with CVODE
-> NMODL .././syn1.mod
Translating stim1.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp
Thread Safe
-> NMODL .././synpre.mod
Translating syn1.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp
Thread Safe
Translating str.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp
Notice: VERBATIM blocks are not thread safe
-> NMODL .././trivial.mod
-> NMODL .././tstdarray.mod
Translating synpre.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
-> NMODL .././tstextrn.mod
Translating trivial.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp
-> NMODL .././tstpnt1.mod
Translating tstextrn.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp
Notice: Use of EXTERNAL is not thread safe.
Translating tstdarray.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp
Thread Safe
-> NMODL .././tstpnt2.mod
-> NMODL .././tstvec.mod
-> NMODL .././vclmp1.mod
Translating tstpnt2.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp
Notice: Use of POINTER is not thread safe.
Translating tstpnt1.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp
Notice: Use of POINTER is not thread safe.
Translating tstvec.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp
Notice: VERBATIM blocks are not thread safe
-> NMODL .././vlag.mod
-> Compiling argpass.cpp
-> Compiling cabpump.cpp
Translating vclmp1.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
Notice: LINEAR is not thread safe.
Translating vlag.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp
Thread Safe
-> Compiling cachan.cpp
-> Compiling cacum.cpp
-> Compiling cacur.cpp
-> Compiling cadif.cpp
-> Compiling cadifusl.cpp
-> Compiling cagk.cpp
-> Compiling cagkftab.cpp
-> Compiling capmp.cpp
-> Compiling expsynspine.cpp
-> Compiling fh.cpp
-> Compiling fit1.cpp
-> Compiling gap.cpp
-> Compiling hh1.cpp
-> Compiling hhvect.cpp
-> Compiling inatest.cpp
-> Compiling ionleak.cpp
-> Compiling nacum.cpp
-> Compiling nacur.cpp
-> Compiling nadifl.cpp
-> Compiling nonlin.cpp
-> Compiling obj_ex.cpp
-> Compiling order.cpp
-> Compiling passiv.cpp
-> Compiling rchan.cpp
-> Compiling stim1.cpp
-> Compiling str.cpp
-> Compiling syn1.cpp
-> Compiling synpre.cpp
-> Compiling trivial.cpp
-> Compiling tstdarray.cpp
-> Compiling tstextrn.cpp
-> Compiling tstpnt1.cpp
-> Compiling tstpnt2.cpp
-> Compiling tstvec.cpp
-> Compiling vclmp1.cpp
-> Compiling vlag.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1537/1733] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc
[1538/1733] Generating example_nmodl/cadif_hoc/cadif.hoc
[1539/1733] Generating example_nmodl/cabpump_hoc/cabpump.hoc
[1540/1733] Generating example_nmodl/cachan_hoc/cachan.hoc
[1541/1733] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc
[1542/1733] Generating example_nmodl/cadif_hoc/cadif.ses
[1543/1733] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc
[1544/1733] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc
[1545/1733] Generating example_nmodl/cv_hoc/cv.hoc
[1546/1733] Generating example_nmodl/cagk_hoc/cagk.hoc
[1547/1733] Generating example_nmodl/capmp_hoc/capmp.hoc
[1548/1733] Generating example_nmodl/fh_hoc/fh.hoc
[1549/1733] Generating example_nmodl/fit1_hoc/fit1.hoc
[1550/1733] Generating example_nmodl/gap_hoc/gap.hoc
[1551/1733] Generating example_nmodl/hh1_hoc/hh1.hoc
[1552/1733] Generating example_nmodl/hhvect_hoc/hhvect.hoc
[1553/1733] Generating example_nmodl/nacum_hoc/nacum.hoc
[1554/1733] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc
[1555/1733] Generating example_nmodl/nadifl1_hoc/nadifl1.ses
[1556/1733] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc
[1557/1733] Generating example_nmodl/nadifl2_hoc/nadifl2.ses
[1558/1733] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc
[1559/1733] Generating example_nmodl/nadifl3_hoc/nadifl3.ses
[1560/1733] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc
[1561/1733] Generating example_nmodl/nadifl4_hoc/nadifl4.ses
[1562/1733] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc
[1563/1733] Generating example_nmodl/order_hoc/order.hoc
[1564/1733] Generating example_nmodl/syn1_hoc/syn1.hoc
[1565/1733] Generating example_nmodl/passiv_hoc/passiv.hoc
[1566/1733] Generating example_nmodl/stim1_hoc/stim1.hoc
[1567/1733] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc
[1568/1733] Generating example_nmodl/synpre_hoc/synpre.hoc
[1569/1733] Generating example_nmodl/cagkftab_py/cagkftab.py
[1570/1733] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc
[1571/1733] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc
[1572/1733] Generating example_nmodl/expsynspine_py/expsynspine.py
[1573/1733] Generating example_nmodl/expsynspine_py/expsynspine.ses
[1574/1733] Generating example_nmodl/tstvec_hoc/tstvec.hoc
[1575/1733] Generating example_nmodl/nonlin_py/nonlin.py
[1576/1733] Generating example_nmodl/tstpnt1_py/tstpnt1.py
[1577/1733] Generating example_nmodl/tstpnt2_py/tstpnt2.py
[1578/1733] Generating example_nmodl/vlag_py/vlag.py
[1579/1733] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/common/catch2_main.cpp.o
[1580/1733] Linking CXX executable bin/test/nrn-benchmarks
[1581/1733] Building special[-core] for test group reduced_dentate
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead
cfiles =
Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod"
MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_CadepK.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KA.mod
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Ca.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRf.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Na.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRs.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/CaBK.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_M.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_UK.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_sAHP.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/LcaMig.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_KIn.mod
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_na8st.mod
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse
[NMODL] [info] :: Running sympy solve visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bgka.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ccanl.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ggap.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gskch.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/holdingi.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hyperde3.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ichan2.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/iconc_Ca.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/kcaPR.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/na3n.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nca.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/spines.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/tca.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././Aradi_CadepK.mod
-> NMODL .././Aradi_Ca.mod
-> NMODL .././Aradi_KA.mod
Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp
Translating Aradi_KA.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp
Thread Safe
Thread Safe
Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp
Thread Safe
-> NMODL .././Aradi_KDRs.mod
-> NMODL .././Aradi_KDRf.mod
-> NMODL .././Aradi_Na.mod
Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp
Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp
Thread Safe
Thread Safe
Translating Aradi_Na.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp
-> NMODL .././CaBK.mod
Thread Safe
-> NMODL .././DGC_M.mod
-> NMODL .././DGC_UK.mod
Translating DGC_M.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp
Translating CaBK.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp
Thread Safe
Thread Safe
-> NMODL .././DGC_sAHP.mod
-> NMODL .././Gfluct3.mod
Translating DGC_UK.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp
Thread Safe
-> NMODL .././LcaMig.mod
-> NMODL .././SH_KIn.mod
Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp
Thread Safe
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp
Thread Safe
-> NMODL .././SH_na8st.mod
-> NMODL .././bgka.mod
Translating LcaMig.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp
Thread Safe
Translating SH_KIn.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp
Thread Safe
-> NMODL .././ccanl.mod
-> NMODL .././ggap.mod
Translating SH_na8st.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp
NEURON's CVode method ignores conservation
Thread Safe
Translating bgka.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp
Thread Safe
-> NMODL .././gskch.mod
-> NMODL .././holdingi.mod
Translating ccanl.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp
Thread Safe
Translating ggap.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp
Thread Safe
-> NMODL .././hyperde3.mod
-> NMODL .././ichan2.mod
Translating gskch.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp
Translating holdingi.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp
Thread Safe
Thread Safe
-> NMODL .././iconc_Ca.mod
-> NMODL .././kcaPR.mod
Translating hyperde3.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp
Translating ichan2.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp
Thread Safe
Thread Safe
-> NMODL .././na3n.mod
Translating iconc_Ca.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp
Thread Safe
Translating kcaPR.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp
Thread Safe
-> NMODL .././nca.mod
-> NMODL .././spines.mod
-> NMODL .././tca.mod
Translating na3n.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp
Thread Safe
Translating nca.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp
Thread Safe
Translating spines.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp
Thread Safe
Translating tca.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp
-> NMODL .././vecevent.mod
Thread Safe
-> Compiling Aradi_Ca.cpp
-> Compiling Aradi_CadepK.cpp
-> Compiling Aradi_KA.cpp
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
-> Compiling Aradi_KDRf.cpp
-> Compiling Aradi_KDRs.cpp
-> Compiling Aradi_Na.cpp
-> Compiling CaBK.cpp
-> Compiling DGC_M.cpp
-> Compiling DGC_UK.cpp
-> Compiling DGC_sAHP.cpp
-> Compiling Gfluct3.cpp
-> Compiling LcaMig.cpp
-> Compiling SH_KIn.cpp
-> Compiling SH_na8st.cpp
-> Compiling bgka.cpp
-> Compiling ccanl.cpp
-> Compiling ggap.cpp
-> Compiling gskch.cpp
-> Compiling holdingi.cpp
-> Compiling hyperde3.cpp
-> Compiling ichan2.cpp
-> Compiling iconc_Ca.cpp
-> Compiling kcaPR.cpp
-> Compiling na3n.cpp
-> Compiling nca.cpp
-> Compiling spines.cpp
-> Compiling tca.cpp
-> Compiling vecevent.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1582/1733] Generating ../../reduced_dentate/neuron/commonutils.py
[1583/1733] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat
[1584/1733] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat
[1585/1733] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat
[1586/1733] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat
[1587/1733] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat
[1588/1733] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat
[1589/1733] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat
[1590/1733] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat
[1591/1733] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat
[1592/1733] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat
[1593/1733] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat
[1594/1733] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat
[1595/1733] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat
[1596/1733] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat
[1597/1733] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat
[1598/1733] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat
[1599/1733] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat
[1600/1733] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat
[1601/1733] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat
[1602/1733] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat
[1603/1733] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat
[1604/1733] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat
[1605/1733] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat
[1606/1733] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat
[1607/1733] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat
[1608/1733] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat
[1609/1733] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat
[1610/1733] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat
[1611/1733] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat
[1612/1733] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat
[1613/1733] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat
[1614/1733] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat
[1615/1733] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat
[1616/1733] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat
[1617/1733] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat
[1618/1733] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat
[1619/1733] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat
[1620/1733] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat
[1621/1733] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat
[1622/1733] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat
[1623/1733] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat
[1624/1733] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat
[1625/1733] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat
[1626/1733] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat
[1627/1733] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat
[1628/1733] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat
[1629/1733] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat
[1630/1733] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat
[1631/1733] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat
[1632/1733] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat
[1633/1733] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat
[1634/1733] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat
[1635/1733] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat
[1636/1733] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat
[1637/1733] Generating ../../reduced_dentate/neuron/lib.hoc
[1638/1733] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc
[1639/1733] Generating ../../reduced_dentate/neuron/main.hoc
[1640/1733] Generating ../../reduced_dentate/neuron/run.hoc
[1641/1733] Generating ../../reduced_dentate/neuron/parameters/Control.hoc
[1642/1733] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc
[1643/1733] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc
[1644/1733] Generating ../../reduced_dentate/neuron/templates/DGC.hoc
[1645/1733] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc
[1646/1733] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc
[1647/1733] Generating ../../reduced_dentate/neuron/templates/Dict.hoc
[1648/1733] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc
[1649/1733] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc
[1650/1733] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc
[1651/1733] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc
[1652/1733] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc
[1653/1733] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc
[1654/1733] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc
[1655/1733] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py
[1656/1733] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc
[1657/1733] Generating ../../reduced_dentate/neuron/templates/defvar.hoc
[1658/1733] Generating ../../reduced_dentate/neuron/templates/Value.hoc
[1659/1733] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat
[1660/1733] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat
[1661/1733] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat
[1662/1733] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat
[1663/1733] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat
[1664/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat
[1665/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat
[1666/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat
[1667/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat
[1668/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat
[1669/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat
[1670/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat
[1671/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat
[1672/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat
[1673/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat
[1674/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat
[1675/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat
[1676/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat
[1677/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat
[1678/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat
[1679/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat
[1680/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat
[1681/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat
[1682/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat
[1683/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat
[1684/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat
[1685/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat
[1686/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat
[1687/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat
[1688/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat
[1689/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat
[1690/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat
[1691/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat
[1692/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat
[1693/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat
[1694/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat
[1695/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat
[1696/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat
[1697/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat
[1698/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat
[1699/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat
[1700/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat
[1701/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat
[1702/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat
[1703/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat
[1704/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat
[1705/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat
[1706/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat
[1707/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat
[1708/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat
[1709/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat
[1710/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat
[1711/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat
[1712/1733] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc
[1713/1733] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat
[1714/1733] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc
[1715/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc
[1716/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc
[1717/1733] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc
[1718/1733] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc
[1719/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc
[1720/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc
[1721/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc
[1722/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc
[1723/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc
[1724/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc
[1725/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc
[1726/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc
[1727/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc
[1728/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc
[1729/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc
[1730/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc
[1731/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc
[1732/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc
[1733/1733] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc
$ ccache -vs 2>/dev/null
Cache directory: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/ccache
Config file: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated: Mon Jan 29 16:55:42 2024
Cacheable calls: 509 / 509 (100.0%)
Hits: 0 / 509 ( 0.00%)
Direct: 0
Preprocessed: 0
Misses: 509 / 509 (100.0%)
Successful lookups:
Direct: 0 / 509 ( 0.00%)
Preprocessed: 0 / 509 ( 0.00%)
Local storage:
Cache size (GiB): 0.3 / 5.0 ( 5.18%)
Files: 1894
Hits: 0 / 509 ( 0.00%)
Misses: 509 / 509 (100.0%)
Reads: 1018
Writes: 949
$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg
$ cat src/nrnpython/setup.cfg
[install]
prefix=
$ ctest --output-on-failure
Test project /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build
Start 219: external_ringtest::coreneuron_cpu_mpi_offline::preparation
Start 227: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
1/280 Test #227: testcorenrn_bbcore::coreneuron_cpu_offline::preparation .................. Passed 1.06 sec
Start 233: testcorenrn_conc::coreneuron_cpu_offline::preparation
2/280 Test #233: testcorenrn_conc::coreneuron_cpu_offline::preparation .................... Passed 0.21 sec
Start 239: testcorenrn_deriv::coreneuron_cpu_offline::preparation
3/280 Test #239: testcorenrn_deriv::coreneuron_cpu_offline::preparation ................... Passed 0.22 sec
Start 251: testcorenrn_kin::coreneuron_cpu_offline::preparation
4/280 Test #219: external_ringtest::coreneuron_cpu_mpi_offline::preparation ............... Passed 1.63 sec
Start 245: testcorenrn_gf::coreneuron_cpu_offline::preparation
5/280 Test #251: testcorenrn_kin::coreneuron_cpu_offline::preparation ..................... Passed 0.22 sec
Start 138: pyinit::nrniv_py3.10_python_check_sys_path::preparation
6/280 Test #138: pyinit::nrniv_py3.10_python_check_sys_path::preparation .................. Passed 0.02 sec
Start 140: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation
7/280 Test #140: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ............... Passed 0.02 sec
Start 142: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation
8/280 Test #142: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................ Passed 0.02 sec
Start 144: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation
9/280 Test #144: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation ............. Passed 0.02 sec
Start 146: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation
10/280 Test #146: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ........... Passed 0.02 sec
Start 148: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation
11/280 Test #148: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........ Passed 0.02 sec
Start 150: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation
12/280 Test #150: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ........... Passed 0.02 sec
Start 152: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation
13/280 Test #245: testcorenrn_gf::coreneuron_cpu_offline::preparation ...................... Passed 0.24 sec
Start 256: testcorenrn_patstim::coreneuron_cpu_offline::preparation
14/280 Test #152: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........ Passed 0.02 sec
Start 154: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation
15/280 Test #154: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ...... Passed 0.02 sec
Start 156: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation
16/280 Test #156: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ... Passed 0.02 sec
Start 158: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation
17/280 Test #158: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation ....... Passed 0.02 sec
Start 160: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation
18/280 Test #160: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation .... Passed 0.02 sec
Start 162: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation
19/280 Test #162: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........ Passed 0.02 sec
Start 164: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation
20/280 Test #164: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation ..... Passed 0.02 sec
Start 166: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation
21/280 Test #166: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation ....... Passed 0.02 sec
Start 168: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation
22/280 Test #168: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation .... Passed 0.02 sec
Start 174: pyinit::nrniv_pydef_python_check_sys_path::preparation
23/280 Test #174: pyinit::nrniv_pydef_python_check_sys_path::preparation ................... Passed 0.02 sec
Start 176: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
24/280 Test #176: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................ Passed 0.02 sec
Start 178: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
25/280 Test #178: pyinit::nrniv_pydef_python_check_sys_prefix::preparation ................. Passed 0.02 sec
Start 180: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
26/280 Test #180: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation .............. Passed 0.02 sec
Start 182: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
27/280 Test #182: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............ Passed 0.02 sec
Start 184: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
28/280 Test #256: testcorenrn_patstim::coreneuron_cpu_offline::preparation ................. Passed 0.27 sec
Start 262: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
29/280 Test #184: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation ......... Passed 0.02 sec
Start 186: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
30/280 Test #186: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............ Passed 0.02 sec
Start 188: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
31/280 Test #188: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation ......... Passed 0.02 sec
Start 190: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
32/280 Test #190: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation ....... Passed 0.02 sec
Start 192: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
33/280 Test #192: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation .... Passed 0.02 sec
Start 194: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
34/280 Test #194: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........ Passed 0.02 sec
Start 196: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
35/280 Test #196: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation ..... Passed 0.02 sec
Start 198: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
36/280 Test #198: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation ......... Passed 0.02 sec
Start 200: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
37/280 Test #200: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ...... Passed 0.02 sec
Start 202: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
38/280 Test #202: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........ Passed 0.02 sec
Start 204: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
39/280 Test #204: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation ..... Passed 0.02 sec
Start 212: external_ringtest::neuron
40/280 Test #262: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ................. Passed 0.22 sec
Start 274: testcorenrn_watch::coreneuron_cpu_offline::preparation
41/280 Test #274: testcorenrn_watch::coreneuron_cpu_offline::preparation ................... Passed 0.23 sec
Start 213: external_ringtest::neuron_mpi
42/280 Test #213: external_ringtest::neuron_mpi ............................................ Passed 2.31 sec
Start 214: external_ringtest::neuron_mpi_python
43/280 Test #212: external_ringtest::neuron ................................................ Passed 4.19 sec
Start 223: testcorenrn_bbcore::neuron
44/280 Test #223: testcorenrn_bbcore::neuron ............................................... Passed 0.22 sec
Start 224: testcorenrn_bbcore::coreneuron_cpu_online
45/280 Test #224: testcorenrn_bbcore::coreneuron_cpu_online ................................ Passed 0.47 sec
Start 225: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
46/280 Test #214: external_ringtest::neuron_mpi_python ..................................... Passed 2.70 sec
Start 215: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
47/280 Test #225: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ............... Passed 0.57 sec
Start 226: testcorenrn_bbcore::coreneuron_cpu_offline
48/280 Test #226: testcorenrn_bbcore::coreneuron_cpu_offline ............................... Passed 0.30 sec
Start 229: testcorenrn_conc::neuron
49/280 Test #229: testcorenrn_conc::neuron ................................................. Passed 0.26 sec
Start 230: testcorenrn_conc::coreneuron_cpu_online
50/280 Test #230: testcorenrn_conc::coreneuron_cpu_online .................................. Passed 0.47 sec
Start 231: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
51/280 Test #215: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................ Passed 1.73 sec
Start 216: external_ringtest::coreneuron_cpu_mpi
52/280 Test #231: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ................. Passed 0.54 sec
Start 232: testcorenrn_conc::coreneuron_cpu_offline
53/280 Test #232: testcorenrn_conc::coreneuron_cpu_offline ................................. Passed 0.17 sec
Start 235: testcorenrn_deriv::neuron
54/280 Test #235: testcorenrn_deriv::neuron ................................................ Passed 0.26 sec
Start 236: testcorenrn_deriv::coreneuron_cpu_online
55/280 Test #216: external_ringtest::coreneuron_cpu_mpi .................................... Passed 0.90 sec
Start 217: external_ringtest::coreneuron_cpu_mpi_python
56/280 Test #236: testcorenrn_deriv::coreneuron_cpu_online ................................. Passed 0.49 sec
Start 237: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
57/280 Test #237: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................ Passed 0.79 sec
Start 238: testcorenrn_deriv::coreneuron_cpu_offline
58/280 Test #238: testcorenrn_deriv::coreneuron_cpu_offline ................................ Passed 0.17 sec
Start 247: testcorenrn_kin::neuron
59/280 Test #217: external_ringtest::coreneuron_cpu_mpi_python ............................. Passed 1.22 sec
Start 218: external_ringtest::coreneuron_cpu_mpi_offline
60/280 Test #247: testcorenrn_kin::neuron .................................................. Passed 0.23 sec
Start 248: testcorenrn_kin::coreneuron_cpu_online
61/280 Test #218: external_ringtest::coreneuron_cpu_mpi_offline ............................ Passed 0.46 sec
Start 241: testcorenrn_gf::neuron
62/280 Test #248: testcorenrn_kin::coreneuron_cpu_online ................................... Passed 0.49 sec
Start 249: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
63/280 Test #249: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate .................. Passed 0.53 sec
Start 250: testcorenrn_kin::coreneuron_cpu_offline
64/280 Test #250: testcorenrn_kin::coreneuron_cpu_offline .................................. Passed 0.18 sec
Start 1: cmd_interface_test
65/280 Test #1: cmd_interface_test ....................................................... Passed 0.43 sec
Start 2: interleave_info_constructor_test
66/280 Test #2: interleave_info_constructor_test ......................................... Passed 0.22 sec
Start 3: alignment_test
67/280 Test #3: alignment_test ........................................................... Passed 0.22 sec
Start 4: queuing_test
68/280 Test #4: queuing_test ............................................................. Passed 0.22 sec
Start 5: test-solver
69/280 Test #241: testcorenrn_gf::neuron ................................................... Passed 1.97 sec
Start 242: testcorenrn_gf::coreneuron_cpu_online
70/280 Test #5: test-solver .............................................................. Passed 0.32 sec
Start 6: lfp_test
71/280 Test #6: lfp_test ................................................................. Passed 0.31 sec
Start 7: unit_tests::testneuron
72/280 Test #242: testcorenrn_gf::coreneuron_cpu_online .................................... Passed 0.65 sec
Start 243: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
73/280 Test #7: unit_tests::testneuron ................................................... Passed 0.28 sec
Start 8: unit_tests::testneuron_soa_erase_calls_terminate
74/280 Test #8: unit_tests::testneuron_soa_erase_calls_terminate ......................... Passed 0.10 sec
Start 9: ringtest
75/280 Test #9: ringtest ................................................................. Passed 0.51 sec
Start 10: connect_dend
76/280 Test #10: connect_dend ............................................................. Passed 0.17 sec
Start 11: mpi_init::nrniv_mpiopt
77/280 Test #11: mpi_init::nrniv_mpiopt ................................................... Passed 0.18 sec
Start 12: mpi_init::nrniv_nrnmpi_init
78/280 Test #12: mpi_init::nrniv_nrnmpi_init .............................................. Passed 0.18 sec
Start 13: mpi_init::python_nrnmpi_init
79/280 Test #13: mpi_init::python_nrnmpi_init ............................................. Passed 0.58 sec
Start 14: mpi_init::python_mpienv
80/280 Test #243: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ................... Passed 1.99 sec
Start 244: testcorenrn_gf::coreneuron_cpu_offline
81/280 Test #14: mpi_init::python_mpienv .................................................. Passed 0.57 sec
Start 15: mpi_init::nrniv_mpiexec_mpiopt
82/280 Test #244: testcorenrn_gf::coreneuron_cpu_offline ................................... Passed 0.46 sec
Start 253: testcorenrn_patstim::neuron
83/280 Test #15: mpi_init::nrniv_mpiexec_mpiopt ........................................... Passed 0.18 sec
Start 16: mpi_init::nrniv_mpiexec_nrnmpi_init
84/280 Test #16: mpi_init::nrniv_mpiexec_nrnmpi_init ...................................... Passed 0.18 sec
Start 17: mpi_init::python_mpiexec_nrnmpi_init
85/280 Test #253: testcorenrn_patstim::neuron .............................................. Passed 0.34 sec
Start 254: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
86/280 Test #17: mpi_init::python_mpiexec_nrnmpi_init ..................................... Passed 0.65 sec
Start 18: mpi_init::python_mpiexec_mpienv
87/280 Test #254: testcorenrn_patstim::coreneuron_cpu_offline_saverestore .................. Passed 0.79 sec
Start 255: testcorenrn_patstim::coreneuron_cpu_offline
88/280 Test #255: testcorenrn_patstim::coreneuron_cpu_offline .............................. Passed 0.29 sec
Start 258: testcorenrn_vecplay::neuron
89/280 Test #18: mpi_init::python_mpiexec_mpienv .......................................... Passed 0.64 sec
Start 19: unit_tests::python_unit_tests
90/280 Test #258: testcorenrn_vecplay::neuron .............................................. Passed 0.32 sec
Start 259: testcorenrn_vecplay::coreneuron_cpu_online
91/280 Test #259: testcorenrn_vecplay::coreneuron_cpu_online ............................... Passed 0.66 sec
Start 260: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
92/280 Test #19: unit_tests::python_unit_tests ............................................ Passed 0.83 sec
Start 20: pytest::basic_tests_py3.10
93/280 Test #260: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate .............. Passed 0.82 sec
Start 261: testcorenrn_vecplay::coreneuron_cpu_offline
94/280 Test #20: pytest::basic_tests_py3.10 ............................................... Passed 0.82 sec
Start 21: pytest_coreneuron::basic_tests_py3.10
95/280 Test #261: testcorenrn_vecplay::coreneuron_cpu_offline .............................. Passed 0.20 sec
Start 270: testcorenrn_watch::neuron
96/280 Test #270: testcorenrn_watch::neuron ................................................ Passed 0.50 sec
Start 271: testcorenrn_watch::coreneuron_cpu_online
97/280 Test #271: testcorenrn_watch::coreneuron_cpu_online ................................. Passed 0.54 sec
Start 272: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
98/280 Test #272: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................ Passed 0.92 sec
Start 273: testcorenrn_watch::coreneuron_cpu_offline
99/280 Test #273: testcorenrn_watch::coreneuron_cpu_offline ................................ Passed 0.19 sec
Start 276: testcorenrn_netstimdirect::direct_netstimdirect
100/280 Test #276: testcorenrn_netstimdirect::direct_netstimdirect .......................... Passed 0.75 sec
Start 277: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
101/280 Test #277: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ......... Passed 0.80 sec
Start 22: datahandle::datahandle_tests
Start 23: coverage_tests::cover_tests
102/280 Test #22: datahandle::datahandle_tests ............................................. Passed 0.87 sec
Start 24: example_nmodl::ca_ap_hoc
103/280 Test #23: coverage_tests::cover_tests .............................................. Passed 1.02 sec
Start 25: example_nmodl::cabpump_hoc
104/280 Test #21: pytest_coreneuron::basic_tests_py3.10 .................................... Passed 5.11 sec
Start 26: example_nmodl::cachan_hoc
105/280 Test #24: example_nmodl::ca_ap_hoc ................................................. Passed 0.41 sec
Start 27: example_nmodl::cadif_hoc
106/280 Test #25: example_nmodl::cabpump_hoc ............................................... Passed 0.30 sec
Start 28: example_nmodl::cadifusl_hoc
107/280 Test #26: example_nmodl::cachan_hoc ................................................ Passed 0.14 sec
Start 29: example_nmodl::cadifusl1_hoc
108/280 Test #27: example_nmodl::cadif_hoc ................................................. Passed 0.17 sec
Start 30: example_nmodl::cadifusl2_hoc
109/280 Test #28: example_nmodl::cadifusl_hoc .............................................. Passed 0.20 sec
Start 31: example_nmodl::cagk_hoc
110/280 Test #30: example_nmodl::cadifusl2_hoc ............................................. Passed 0.17 sec
Start 32: example_nmodl::capmp_hoc
111/280 Test #31: example_nmodl::cagk_hoc .................................................. Passed 0.14 sec
Start 33: example_nmodl::cv_hoc
112/280 Test #29: example_nmodl::cadifusl1_hoc ............................................. Passed 0.29 sec
Start 34: example_nmodl::fh_hoc
113/280 Test #33: example_nmodl::cv_hoc .................................................... Passed 0.13 sec
Start 35: example_nmodl::fit1_hoc
114/280 Test #34: example_nmodl::fh_hoc .................................................... Passed 0.13 sec
Start 36: example_nmodl::gap_hoc
115/280 Test #32: example_nmodl::capmp_hoc ................................................. Passed 0.25 sec
Start 37: example_nmodl::hh1_hoc
116/280 Test #35: example_nmodl::fit1_hoc .................................................. Passed 0.14 sec
Start 38: example_nmodl::hhvect_hoc
117/280 Test #36: example_nmodl::gap_hoc ................................................... Passed 0.15 sec
Start 39: example_nmodl::nacum_hoc
118/280 Test #37: example_nmodl::hh1_hoc ................................................... Passed 0.14 sec
Start 40: example_nmodl::nadifl1_hoc
119/280 Test #38: example_nmodl::hhvect_hoc ................................................ Passed 0.14 sec
Start 41: example_nmodl::nadifl2_hoc
120/280 Test #39: example_nmodl::nacum_hoc ................................................. Passed 0.14 sec
Start 42: example_nmodl::nadifl3_hoc
121/280 Test #40: example_nmodl::nadifl1_hoc ............................................... Passed 0.16 sec
Start 43: example_nmodl::nadifl4_hoc
122/280 Test #41: example_nmodl::nadifl2_hoc ............................................... Passed 0.17 sec
Start 44: example_nmodl::obj_ex_hoc
123/280 Test #42: example_nmodl::nadifl3_hoc ............................................... Passed 0.17 sec
Start 45: example_nmodl::order_hoc
124/280 Test #43: example_nmodl::nadifl4_hoc ............................................... Passed 0.17 sec
Start 46: example_nmodl::passiv_hoc
125/280 Test #44: example_nmodl::obj_ex_hoc ................................................ Passed 0.14 sec
Start 47: example_nmodl::stim1_hoc
126/280 Test #45: example_nmodl::order_hoc ................................................. Passed 0.17 sec
Start 48: example_nmodl::syn1_hoc
127/280 Test #46: example_nmodl::passiv_hoc ................................................ Passed 0.14 sec
Start 49: example_nmodl::synpre_hoc
128/280 Test #47: example_nmodl::stim1_hoc ................................................. Passed 0.14 sec
Start 50: example_nmodl::tstextrn_hoc
129/280 Test #48: example_nmodl::syn1_hoc .................................................. Passed 0.14 sec
Start 51: example_nmodl::tstpnt1_hoc
130/280 Test #50: example_nmodl::tstextrn_hoc .............................................. Passed 0.13 sec
Start 52: example_nmodl::tstpnt2_hoc
131/280 Test #49: example_nmodl::synpre_hoc ................................................ Passed 0.20 sec
Start 53: example_nmodl::tstvec_hoc
132/280 Test #51: example_nmodl::tstpnt1_hoc ............................................... Passed 0.14 sec
Start 54: example_nmodl::cagkftab_py
133/280 Test #52: example_nmodl::tstpnt2_hoc ............................................... Passed 0.14 sec
Start 55: example_nmodl::expsynspine_py
134/280 Test #53: example_nmodl::tstvec_hoc ................................................ Passed 0.14 sec
Start 56: example_nmodl::nonlin_py
135/280 Test #55: example_nmodl::expsynspine_py ............................................ Passed 0.77 sec
Start 57: example_nmodl::tstpnt1_py
136/280 Test #57: example_nmodl::tstpnt1_py ................................................ Passed 0.52 sec
Start 58: example_nmodl::tstpnt2_py
137/280 Test #58: example_nmodl::tstpnt2_py ................................................ Passed 0.50 sec
Start 59: example_nmodl::vlag_py
138/280 Test #59: example_nmodl::vlag_py ................................................... Passed 0.58 sec
Start 60: hoctests::test_loadbal_hoc
139/280 Test #56: example_nmodl::nonlin_py ................................................. Passed 2.72 sec
Start 61: hoctests::perf1_hoc
140/280 Test #60: hoctests::test_loadbal_hoc ............................................... Passed 0.39 sec
Start 62: hoctests::test1_hoc
141/280 Test #62: hoctests::test1_hoc ...................................................... Passed 0.35 sec
Start 63: hoctests::test2_hoc
142/280 Test #63: hoctests::test2_hoc ...................................................... Passed 0.21 sec
Start 64: hoctests::test3_hoc
143/280 Test #64: hoctests::test3_hoc ...................................................... Passed 0.15 sec
Start 65: hoctests::test4_hoc
144/280 Test #65: hoctests::test4_hoc ...................................................... Passed 0.13 sec
Start 66: hoctests::test5_hoc
145/280 Test #66: hoctests::test5_hoc ...................................................... Passed 0.12 sec
Start 67: hoctests::test6_hoc
146/280 Test #67: hoctests::test6_hoc ...................................................... Passed 0.12 sec
Start 68: hoctests::test7_hoc
147/280 Test #68: hoctests::test7_hoc ...................................................... Passed 0.13 sec
Start 69: hoctests::test8_hoc
148/280 Test #69: hoctests::test8_hoc ...................................................... Passed 0.12 sec
Start 70: hoctests::test9_hoc
149/280 Test #70: hoctests::test9_hoc ...................................................... Passed 0.13 sec
Start 71: hoctests::test_cvinterp_py
150/280 Test #61: hoctests::perf1_hoc ...................................................... Passed 1.48 sec
Start 72: hoctests::test_hocGUI2_py
151/280 Test #54: example_nmodl::cagkftab_py ............................................... Passed 4.40 sec
Start 73: hoctests::test_kschan_py
152/280 Test #71: hoctests::test_cvinterp_py ............................................... Passed 0.82 sec
Start 74: hoctests::test_mechfunc_py
153/280 Test #72: hoctests::test_hocGUI2_py ................................................ Passed 0.80 sec
Start 75: hoctests::test_mode_py
154/280 Test #73: hoctests::test_kschan_py ................................................. Passed 0.82 sec
Start 76: hoctests::test_neurondemo_py
155/280 Test #74: hoctests::test_mechfunc_py ............................................... Passed 0.76 sec
Start 77: hoctests::test_nrniv-launch_py
156/280 Test #75: hoctests::test_mode_py ................................................... Passed 0.76 sec
Start 78: hoctests::test_setdata_py
157/280 Test #76: hoctests::test_neurondemo_py ............................................. Passed 0.79 sec
Start 79: hoctests::test_shape_py
158/280 Test #77: hoctests::test_nrniv-launch_py ........................................... Passed 0.43 sec
Start 80: hoctests::test_thread_partition_py
159/280 Test #78: hoctests::test_setdata_py ................................................ Passed 0.84 sec
Start 81: hoctests::test1_py
160/280 Test #79: hoctests::test_shape_py .................................................. Passed 1.00 sec
Start 82: hoctests::test2_py
161/280 Test #80: hoctests::test_thread_partition_py ....................................... Passed 0.96 sec
Start 83: hoctests::test9_py
162/280 Test #81: hoctests::test1_py ....................................................... Passed 0.69 sec
Start 89: coreneuron_standalone::test_nrn_corenrn_standalone
163/280 Test #82: hoctests::test2_py ....................................................... Passed 0.79 sec
Start 90: nmodl_tests::test_table
164/280 Test #83: hoctests::test9_py ....................................................... Passed 0.90 sec
Start 91: nmodl_tests::test_disc
165/280 Test #89: coreneuron_standalone::test_nrn_corenrn_standalone ....................... Passed 1.07 sec
Start 92: nmodl_tests::test_function_table
166/280 Test #90: nmodl_tests::test_table .................................................. Passed 1.08 sec
Start 93: nmodl_tests::test_kinetic
167/280 Test #91: nmodl_tests::test_disc ................................................... Passed 1.00 sec
Start 94: coreneuron_modtests::version_macros
168/280 Test #92: nmodl_tests::test_function_table ......................................... Passed 1.11 sec
Start 96: coreneuron_modtests::fornetcon_py_cpu
169/280 Test #93: nmodl_tests::test_kinetic ................................................ Passed 0.97 sec
Start 97: coreneuron_modtests::direct_py_cpu
170/280 Test #94: coreneuron_modtests::version_macros ...................................... Passed 1.38 sec
Start 98: coreneuron_modtests::direct_hoc_cpu
171/280 Test #96: coreneuron_modtests::fornetcon_py_cpu .................................... Passed 1.13 sec
Start 99: coreneuron_modtests::spikes_py_cpu
172/280 Test #98: coreneuron_modtests::direct_hoc_cpu ...................................... Passed 0.71 sec
Start 100: coreneuron_modtests::spikes_file_mode_py_cpu
173/280 Test #97: coreneuron_modtests::direct_py_cpu ....................................... Passed 1.51 sec
Start 101: coreneuron_modtests::fast_imem_py_cpu
174/280 Test #99: coreneuron_modtests::spikes_py_cpu ....................................... Passed 1.14 sec
Start 102: coreneuron_modtests::datareturn_py_cpu
175/280 Test #100: coreneuron_modtests::spikes_file_mode_py_cpu ............................. Passed 1.05 sec
Start 103: coreneuron_modtests::test_units_py_cpu
176/280 Test #101: coreneuron_modtests::fast_imem_py_cpu .................................... Passed 1.53 sec
Start 104: coreneuron_modtests::test_netmove_py_cpu
177/280 Test #103: coreneuron_modtests::test_units_py_cpu ................................... Passed 0.77 sec
Start 105: coreneuron_modtests::test_pointer_py_cpu
178/280 Test #102: coreneuron_modtests::datareturn_py_cpu ................................... Passed 1.43 sec
Start 106: coreneuron_modtests::test_watchrange_py_cpu
179/280 Test #106: coreneuron_modtests::test_watchrange_py_cpu .............................. Passed 0.99 sec
Start 107: coreneuron_modtests::test_psolve_py_cpu
180/280 Test #104: coreneuron_modtests::test_netmove_py_cpu ................................. Passed 1.49 sec
Start 108: coreneuron_modtests::test_ba_py_cpu
181/280 Test #108: coreneuron_modtests::test_ba_py_cpu ...................................... Passed 0.82 sec
Start 109: coreneuron_modtests::test_natrans_py_cpu
182/280 Test #107: coreneuron_modtests::test_psolve_py_cpu .................................. Passed 1.00 sec
Start 112: nmodl_tests_coreneuron::test_table_coreneuron_cpu
183/280 Test #112: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................ Passed 0.68 sec
Start 113: nmodl_tests_coreneuron::test_disc_coreneuron_cpu
184/280 Test #109: coreneuron_modtests::test_natrans_py_cpu ................................. Passed 0.80 sec
Start 114: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu
185/280 Test #105: coreneuron_modtests::test_pointer_py_cpu ................................. Passed 3.55 sec
Start 115: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu
186/280 Test #113: nmodl_tests_coreneuron::test_disc_coreneuron_cpu ......................... Passed 0.78 sec
Start 116: modlunit_unitstest
187/280 Test #114: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ............... Passed 0.77 sec
Start 117: modlunit_hh
188/280 Test #116: modlunit_unitstest ....................................................... Passed 0.21 sec
Start 118: modlunit_stim
189/280 Test #117: modlunit_hh .............................................................. Passed 0.16 sec
Start 119: modlunit_pattern
190/280 Test #118: modlunit_stim ............................................................ Passed 0.14 sec
Start 120: pyinit::nrniv_script.py
191/280 Test #119: modlunit_pattern ......................................................... Passed 0.14 sec
Start 121: pyinit::nrniv_script.py_error
192/280 Test #121: pyinit::nrniv_script.py_error ............................................ Passed 0.15 sec
Start 122: pyinit::nrniv_two_scripts.py
193/280 Test #120: pyinit::nrniv_script.py .................................................. Passed 0.21 sec
Start 123: pyinit::nrniv_two_scripts.py_error_check_code
194/280 Test #115: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ...................... Passed 0.75 sec
Start 124: pyinit::nrniv_two_scripts.py_error_check_output
195/280 Test #122: pyinit::nrniv_two_scripts.py ............................................. Passed 0.13 sec
Start 125: pyinit::nrniv_python_command
196/280 Test #123: pyinit::nrniv_two_scripts.py_error_check_code ............................ Passed 0.13 sec
Start 126: pyinit::nrniv_python_command_error
197/280 Test #124: pyinit::nrniv_two_scripts.py_error_check_output .......................... Passed 0.12 sec
Start 127: pyinit::nrniv_python_script.py
198/280 Test #125: pyinit::nrniv_python_command ............................................. Passed 0.12 sec
Start 128: pyinit::nrniv_python_script.py_error
199/280 Test #126: pyinit::nrniv_python_command_error ....................................... Passed 0.13 sec
Start 129: pyinit::nrniv_python_command_twice
200/280 Test #127: pyinit::nrniv_python_script.py ........................................... Passed 0.13 sec
Start 130: pyinit::nrniv_python_script.py_twice
201/280 Test #128: pyinit::nrniv_python_script.py_error ..................................... Passed 0.13 sec
Start 131: pyinit::nrniv_python_command_args
202/280 Test #129: pyinit::nrniv_python_command_twice ....................................... Passed 0.13 sec
Start 132: pyinit::nrniv_python_script.py_args
203/280 Test #130: pyinit::nrniv_python_script.py_twice ..................................... Passed 0.13 sec
Start 133: pyinit::nrniv_nopython_PythonObject
204/280 Test #131: pyinit::nrniv_python_command_args ........................................ Passed 0.13 sec
Start 134: pyinit::nrniv_nopython_PythonObject_pyexe
205/280 Test #132: pyinit::nrniv_python_script.py_args ...................................... Passed 0.13 sec
Start 135: pyinit::nrniv_nopython_PythonObject_pyenv
206/280 Test #133: pyinit::nrniv_nopython_PythonObject ...................................... Passed 0.11 sec
Start 136: pyinit::nrniv_py3.10_python_command_version_check
207/280 Test #134: pyinit::nrniv_nopython_PythonObject_pyexe ................................ Passed 0.11 sec
Start 137: pyinit::nrniv_py3.10_python_check_sys_path
208/280 Test #135: pyinit::nrniv_nopython_PythonObject_pyenv ................................ Passed 0.11 sec
Start 139: pyinit::nrniv_py3.10_nrnpython_check_sys_path
209/280 Test #136: pyinit::nrniv_py3.10_python_command_version_check ........................ Passed 0.13 sec
Start 141: pyinit::nrniv_py3.10_python_check_sys_prefix
210/280 Test #137: pyinit::nrniv_py3.10_python_check_sys_path ............................... Passed 0.13 sec
Start 143: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix
211/280 Test #139: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................ Passed 0.13 sec
Start 145: pyinit::nrniv_py3.10_python_check_sys_exec_prefix
212/280 Test #141: pyinit::nrniv_py3.10_python_check_sys_prefix ............................. Passed 0.13 sec
Start 147: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix
213/280 Test #143: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix .......................... Passed 0.13 sec
Start 149: pyinit::nrniv_py3.10_python_check_sys_base_prefix
214/280 Test #145: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................ Passed 0.13 sec
Start 151: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix
215/280 Test #147: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix ..................... Passed 0.13 sec
Start 153: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix
216/280 Test #149: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................ Passed 0.13 sec
Start 155: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix
217/280 Test #151: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix ..................... Passed 0.13 sec
Start 157: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding
218/280 Test #153: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ................... Passed 0.13 sec
Start 159: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding
219/280 Test #155: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................ Passed 0.13 sec
Start 161: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding
220/280 Test #157: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding .................... Passed 0.13 sec
Start 163: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding
221/280 Test #159: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding ................. Passed 0.13 sec
Start 165: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding
222/280 Test #161: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding ..................... Passed 0.13 sec
Start 167: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding
223/280 Test #163: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding .................. Passed 0.13 sec
Start 169: pyinit::nrniv_py3.10_python_command_import_neuron
224/280 Test #165: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding .................... Passed 0.13 sec
Start 170: pyinit::py3.10_command_import_neuron
225/280 Test #167: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding ................. Passed 0.13 sec
Start 171: pyinit::nrniv_py3.10_hoc_command_nrnpython
226/280 Test #171: pyinit::nrniv_py3.10_hoc_command_nrnpython ............................... Passed 0.21 sec
Start 172: pyinit::nrniv_pydef_python_command_version_check
227/280 Test #172: pyinit::nrniv_pydef_python_command_version_check ......................... Passed 0.24 sec
Start 173: pyinit::nrniv_pydef_python_check_sys_path
228/280 Test #169: pyinit::nrniv_py3.10_python_command_import_neuron ........................ Passed 0.65 sec
Start 175: pyinit::nrniv_pydef_nrnpython_check_sys_path
229/280 Test #173: pyinit::nrniv_pydef_python_check_sys_path ................................ Passed 0.17 sec
Start 177: pyinit::nrniv_pydef_python_check_sys_prefix
230/280 Test #170: pyinit::py3.10_command_import_neuron ..................................... Passed 0.64 sec
Start 179: pyinit::nrniv_pydef_nrnpython_check_sys_prefix
231/280 Test #175: pyinit::nrniv_pydef_nrnpython_check_sys_path ............................. Passed 0.13 sec
Start 181: pyinit::nrniv_pydef_python_check_sys_exec_prefix
232/280 Test #177: pyinit::nrniv_pydef_python_check_sys_prefix .............................. Passed 0.13 sec
Start 183: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix
233/280 Test #179: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ........................... Passed 0.13 sec
Start 185: pyinit::nrniv_pydef_python_check_sys_base_prefix
234/280 Test #181: pyinit::nrniv_pydef_python_check_sys_exec_prefix ......................... Passed 0.13 sec
Start 187: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix
235/280 Test #183: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ...................... Passed 0.13 sec
Start 189: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix
236/280 Test #185: pyinit::nrniv_pydef_python_check_sys_base_prefix ......................... Passed 0.13 sec
Start 191: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix
237/280 Test #187: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ...................... Passed 0.13 sec
Start 193: pyinit::nrniv_pydef_python_check_sys_stderr.encoding
238/280 Test #189: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix .................... Passed 0.13 sec
Start 195: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding
239/280 Test #191: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix ................. Passed 0.13 sec
Start 197: pyinit::nrniv_pydef_python_check_sys_stdin.encoding
240/280 Test #193: pyinit::nrniv_pydef_python_check_sys_stderr.encoding ..................... Passed 0.13 sec
Start 199: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding
241/280 Test #195: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding .................. Passed 0.13 sec
Start 201: pyinit::nrniv_pydef_python_check_sys_stdout.encoding
242/280 Test #197: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ...................... Passed 0.13 sec
Start 203: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding
243/280 Test #199: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ................... Passed 0.13 sec
Start 205: pyinit::nrniv_pydef_python_command_import_neuron
244/280 Test #201: pyinit::nrniv_pydef_python_check_sys_stdout.encoding ..................... Passed 0.13 sec
Start 206: pyinit::pydef_command_import_neuron
245/280 Test #203: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding .................. Passed 0.13 sec
Start 207: pyinit::nrniv_pydef_hoc_command_nrnpython
246/280 Test #207: pyinit::nrniv_pydef_hoc_command_nrnpython ................................ Passed 0.24 sec
Start 208: external_nrntest
247/280 Test #205: pyinit::nrniv_pydef_python_command_import_neuron ......................... Passed 0.62 sec
Start 228: testcorenrn_bbcore::compare_results
248/280 Test #206: pyinit::pydef_command_import_neuron ...................................... Passed 0.62 sec
Start 234: testcorenrn_conc::compare_results
249/280 Test #234: testcorenrn_conc::compare_results ........................................ Passed 0.09 sec
Start 240: testcorenrn_deriv::compare_results
250/280 Test #228: testcorenrn_bbcore::compare_results ...................................... Passed 0.14 sec
Start 246: testcorenrn_gf::compare_results
251/280 Test #240: testcorenrn_deriv::compare_results ....................................... Passed 0.02 sec
Start 252: testcorenrn_kin::compare_results
252/280 Test #246: testcorenrn_gf::compare_results .......................................... Passed 0.02 sec
Start 257: testcorenrn_patstim::compare_results
253/280 Test #252: testcorenrn_kin::compare_results ......................................... Passed 0.02 sec
Start 263: testcorenrn_vecplay::compare_results
254/280 Test #257: testcorenrn_patstim::compare_results ..................................... Passed 0.02 sec
Start 275: testcorenrn_watch::compare_results
255/280 Test #275: testcorenrn_watch::compare_results ....................................... Passed 0.02 sec
Start 278: testcorenrn_netstimdirect::compare_results
256/280 Test #263: testcorenrn_vecplay::compare_results ..................................... Passed 0.02 sec
257/280 Test #278: testcorenrn_netstimdirect::compare_results ............................... Passed 0.02 sec
Start 85: parallel::partrans
258/280 Test #85: parallel::partrans ....................................................... Passed 0.84 sec
Start 86: parallel::netpar
259/280 Test #86: parallel::netpar ......................................................... Passed 0.69 sec
Start 87: parallel::bas
260/280 Test #87: parallel::bas ............................................................ Passed 3.50 sec
Start 88: parallel::nrntest_fast
261/280 Test #88: parallel::nrntest_fast ................................................... Passed 1.21 sec
Start 95: coreneuron_modtests::inputpresyn_py
262/280 Test #95: coreneuron_modtests::inputpresyn_py ...................................... Passed 0.72 sec
Start 110: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
263/280 Test #110: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ......................... Passed 0.80 sec
Start 279: tqperf::coreneuron_special
264/280 Test #279: tqperf::coreneuron_special ............................................... Passed 2.38 sec
Start 280: tqperf::coreneuron_python
265/280 Test #280: tqperf::coreneuron_python ................................................ Passed 2.34 sec
266/280 Test #208: external_nrntest ......................................................... Passed 42.32 sec
Start 268: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
267/280 Test #268: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................ Passed 0.27 sec
Start 209: reduced_dentate::neuron
268/280 Test #209: reduced_dentate::neuron .................................................. Passed 40.14 sec
Start 210: reduced_dentate::coreneuron_cpu
269/280 Test #210: reduced_dentate::coreneuron_cpu .......................................... Passed 32.88 sec
Start 220: external_ringtest::coreneuron_cpu_mpi_threads
270/280 Test #220: external_ringtest::coreneuron_cpu_mpi_threads ............................ Passed 0.96 sec
Start 221: external_ringtest::coreneuron_cpu_mpi_threads_python
271/280 Test #221: external_ringtest::coreneuron_cpu_mpi_threads_python ..................... Passed 1.03 sec
Start 264: testcorenrn_vecevent::neuron
272/280 Test #264: testcorenrn_vecevent::neuron ............................................. Passed 0.27 sec
Start 265: testcorenrn_vecevent::coreneuron_cpu_online
273/280 Test #265: testcorenrn_vecevent::coreneuron_cpu_online .............................. Passed 0.59 sec
Start 266: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
274/280 Test #266: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ............. Passed 0.66 sec
Start 267: testcorenrn_vecevent::coreneuron_cpu_offline
275/280 Test #267: testcorenrn_vecevent::coreneuron_cpu_offline ............................. Passed 0.21 sec
Start 84: parallel::subworld
276/280 Test #84: parallel::subworld ....................................................... Passed 1.15 sec
Start 111: coreneuron_modtests::test_subworlds_py_cpu
277/280 Test #111: coreneuron_modtests::test_subworlds_py_cpu ............................... Passed 1.30 sec
Start 211: reduced_dentate::compare_results
Start 222: external_ringtest::compare_results
Start 269: testcorenrn_vecevent::compare_results
278/280 Test #211: reduced_dentate::compare_results ......................................... Passed 0.02 sec
279/280 Test #269: testcorenrn_vecevent::compare_results .................................... Passed 0.02 sec
280/280 Test #222: external_ringtest::compare_results ....................................... Passed 0.02 sec
100% tests passed, 0 tests failed out of 280
Total Test time (real) = 168.79 sec
$ cmake --build . --target install
[0/2] Re-checking globbed directories...
[1/5] Update hh.mod for CoreNEURON compatibility
[2/5] Generating help_data.dat
[3/5] cd /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[4/5] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn" is shallow and may cause errors
warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:running build_scripts
[4/5] Install the project...
-- Install configuration: "Custom"
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libfmt.a
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/args.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/chrono.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/color.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/compile.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/core.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/format.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/format-inl.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/os.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/ostream.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/printf.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/ranges.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/std.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/fmt/xchar.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/cmake/fmt/fmt-config.cmake
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/cmake/fmt/fmt-config-version.cmake
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/cmake/fmt/fmt-targets.cmake
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/cmake/fmt/fmt-targets-custom.cmake
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/pkgconfig/fmt.pc
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libsymtab.a
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/librxdmath.dylib
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libnrniv.dylib
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libnrngnu.a
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libvisitor.a
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/hclass3.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/hoc.cpython-310-darwin.so
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/expect_hocerr.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/psection.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/neuroml
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/neuroml/metadata.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/neuroml/morphml.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/neuroml/xml2nrn.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/neuroml/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/neuroml/neuroml.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/neuroml/rdxml.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/neuroml/biophysics.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/config.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/units.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/sections.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdException.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/options.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/plugins.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdsection.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/species.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdmath.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/rate.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/region.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/multiCompartmentReaction.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/constants.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/dimension3.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/section1d.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/export.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/initializer.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/rangevar.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/geometry.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxd.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/generalizedReaction.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/nodelist.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/node.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/gui.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/rxd/reaction.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/tests
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/tests/_subclass.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/tests/test_all.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/tests/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/tests/utils
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/strtobool.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/capture_stdout.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/checkresult.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/tests/test_neuron.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/tests/test_vector.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/tests/test_rxd.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/_config_params.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/coreneuron.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/doc.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/gui2
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/gui2/setup_threejs.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/gui2/config.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/gui2/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/gui2/rangevar.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/gui2/plotshape.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/gui2/utilities.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/crxd
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/crxd/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/help_data.dat
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/gui.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/python/neuron/nonvint_block_supervisor.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libspdlog.a
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libfmt.a
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/dsl.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/symtab.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext/example
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext/example/passive.mod
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext/example/expsyn.mod
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext/example/exp2syn.mod
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext/example/hh.mod
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext/viz
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext/viz/index.html
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext/viz/css
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext/viz/css/tree.css
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js/d3.min.js
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js/tree.js
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/visitor.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ast.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/ode.py
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/nmodl/_nmodl.cpython-310-darwin.so
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libpywrapper.a
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/liblexer.a
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libsparse13.a
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libpyembed.a
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libcoreneuron-core.a
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libcodegen.a
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libutil.a
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/crout_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/cache
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/cache/mechanism_range.hpp
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/container
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/container/non_owning_soa_identifier.hpp
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/container/data_handle.hpp
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/container/generic_data_handle.hpp
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/model_data_fwd.hpp
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnrandom.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/hocassrt.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/multicore.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnconf.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/wrap_sprintf.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/simeq.hpp
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/ocmisc.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/multisplit.h
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/oc_ansi.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include//coreneuron/permute/data_layout.hpp
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/coreneuron/mod_func.c.pl
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/coreneuron/enginemech.cpp
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/bin/nmodl
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/bin/nrniv-core
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/coreneuron/coreneuron.cpp
-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/lib/libcorenrnmech_internal.dylib
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/cache
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/cache/mechanism_range.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/container
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/container/non_owning_soa_identifier.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/container/data_handle.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/container/generic_data_handle.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron/model_data_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnrandom.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/hocassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/multicore.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/wrap_sprintf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/simeq.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/ocmisc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/multisplit.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/oc_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/hoclist.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/membfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnversionmacros.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/scoplib.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/sparse.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/membdef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/neuron.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/newton
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/newton/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrncvode
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrncvode/nrnneosm.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/bbsavestate.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nmodlmutex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/euler_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/hocdec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/hocgetsym.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/euler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/options.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/QtAlignedMalloc
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/Dense
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/QR
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/StdList
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/MetisSupport
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Householder
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SVD
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/StlSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnapi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrncvode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnsemanticversion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/spmatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/ocfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/section_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/row_view.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/hoc_membf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/backtrace_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnisaac.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/parse_with_deps.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/dimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrniv_mf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/memory.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrn_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/deflate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/errcodes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/permute
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/mech_api.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123
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-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/modfile
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-- Installing: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/bin/set_nrnpyenv.sh
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/plugins/IndexedViewMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/plugins/ReshapedMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Householder/HouseholderSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Householder/Householder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Householder/BlockHouseholder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport/PardisoSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/CompressedStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseColEtree.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTriangularView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseAssign.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparsePermutation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMap.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDenseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseFuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/MappedSparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/TriangularSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCompressedBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDot.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Jacobi/Jacobi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/QR
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SVD
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/StlSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Eigen/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnapi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrncvode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnsemanticversion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/spmatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/ocfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/section_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/row_view.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/hoc_membf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/backtrace_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnisaac.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/parse_with_deps.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/dimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrniv_mf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/memory.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrn_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/deflate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/errcodes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/spconfig.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/runge.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/nrnoc_ml.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/mech_api.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/mcran4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/hocparse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/ssimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/open64features.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/sse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/threefry.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/conventional
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/philox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/gsl_microrng.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/aes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/array.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/u01fixedpt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/boxmuller.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/uniform.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/Random123/ars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/crout
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/crout/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/include/treeset.h
.: replacing existing signature
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"install" of folder "nrn" of folder "cellular" of folder "hpc" of folder "J1137105" of folder "P189119" of folder "0" of folder "builds" of folder "gitlab-runner" of folder "Users"
35:57: execution error: Finder got an error: AppleEvent timed out. (-1712)
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"
Creating 'arm64' directory for .o files.
MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
-> Compiling mod_func.cpp
-> NMODL ../cabpump.mod
-> NMODL ../cachan1.mod
-> NMODL ../camchan.mod
Translating camchan.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/camchan.cpp
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cabpump.cpp
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cachan1.cpp
Thread Safe
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Thread Safe
-> NMODL ../capump.mod
-> NMODL ../invlfire.mod
-> NMODL ../khhchan.mod
Translating capump.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/capump.cpp
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/khhchan.cpp
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/invlfire.cpp
Thread Safe
Thread Safe
Thread Safe
-> NMODL ../nacaex.mod
-> NMODL ../nachan.mod
-> NMODL ../release.mod
Translating nachan.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nachan.cpp
Translating release.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/release.cpp
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
Thread Safe
Thread Safe
-> Compiling cachan1.cpp
-> Compiling cabpump.cpp
-> Compiling camchan.cpp
-> Compiling capump.cpp
-> Compiling invlfire.cpp
-> Compiling khhchan.cpp
-> Compiling nacaex.cpp
-> Compiling nachan.cpp
-> Compiling release.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
NEURON -- VERSION + HEAD (2a7de92+) 2024-01-29
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2022
See http://neuron.yale.edu/neuron/credits
Additional mechanisms from files
"cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"
$ export PATH=${INSTALL_DIR}/bin:${PATH}
$ export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python/
$ if [[ -f "${INSTALL_DIR}/bin/nrn-enable-sanitizer" ]]; then
$ echo --- bin/nrn-enable-sanitizer ---
--- bin/nrn-enable-sanitizer ---
$ cat bin/nrn-enable-sanitizer
#!/usr/bin/env bash
prefix="${NRNHOME:-/Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/install}"
export NRN_SANITIZER_PRELOAD_VAR=DYLD_INSERT_LIBRARIES
export NRN_SANITIZER_PRELOAD_VAL=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
if [[ "$1" == "--preload" ]]; then
shift
if [[ "$1" == "python" ]]; then
# nrn-enable-sanitizer --preload python is used in the CI, but for it to
# work on macOS we need to substitute the real Python binary in place of any
# shims. This is done from CMake, and PYTHON_EXECUTABLE contains the real
# binary.
shift
DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 /Users/gitlab-runner/builds/0/P189119/J1137105/hpc/cellular/nrn/venv/bin/python "$@"
else
DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@"
fi
else
MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@"
fi
$ echo ---
---
$ nrn_enable_sanitizer=${INSTALL_DIR}/bin/nrn-enable-sanitizer
$ nrn_enable_sanitizer_preload="${nrn_enable_sanitizer} --preload"
$ else
$ $PYTHON --version && ${nrn_enable_sanitizer_preload} python -c 'import neuron; neuron.test()'
Python 3.10.13
testAssignmentSlicing (neuron.tests.test_vector.VectorTestCase) ... ok
testBytesize (neuron.tests.test_vector.VectorTestCase)
Test that Vector.__array_interface__ returns the proper bytesize (of a double) ... ok
testEndian (neuron.tests.test_vector.VectorTestCase)
Test that Vector.__array_interface__ returns the proper byteorder (endian) ... ok
testErrorHandling (neuron.tests.test_vector.VectorTestCase) ... ok
testNegativeIndex (neuron.tests.test_vector.VectorTestCase) ... ok
testNumpyInteraction (neuron.tests.test_vector.VectorTestCase)
Testing numpy.array <=> hoc.Vector interaction ... ok
testPerformance (neuron.tests.test_vector.VectorTestCase)
Test performance of Vector<->list,array ... ok
testSlicing (neuron.tests.test_vector.VectorTestCase) ... ok
testABI (neuron.tests.test_neuron.NeuronTestCase)
Test use of some Py_LIMITED_API for python3. ... ok
testExtendedSection (neuron.tests.test_neuron.NeuronTestCase) ...
Executed "l = range(1000000)". Elapsed = 0.000027 s
Executed "v = h.Vector(l)". Elapsed = 0.048767 s
inplace:
Executed "v.from_python(l)". Elapsed = 0.042914 s
Executed "a = numpy.array(v)". Elapsed = 0.003402 s
inplace:
Executed "v.to_python(a)". Elapsed = 0.000821 s
Executed "v2 = h.Vector(a)". Elapsed = 0.003140 s
inplace:
Executed "v2.from_python(a)". Elapsed = 0.000783 s
Executed "l2 = list(v2)". Elapsed = 0.041179 s
inplace:
Executed "v.to_python(l2)". Elapsed = 0.007043 s
Executed "v2 = h.Vector(a[::-1])". Elapsed = 0.003155 s
Executed "a2 = numpy.array(v2)". Elapsed = 0.003278 s
test: ok
testHClass (neuron.tests.test_neuron.NeuronTestCase)
Test subclass of hoc class. ... ok
testHelp (neuron.tests.test_neuron.NeuronTestCase) ... ok
testIterators (neuron.tests.test_neuron.NeuronTestCase)
Test section, segment, mechanism, rangevar iterators. ... ok
testRxDexistence (neuron.tests.test_neuron.NeuronTestCase) ... ok
testSectionArgOrder (neuron.tests.test_neuron.NeuronTestCase)
First optional arg for Section is name (but name="name" is recommended) ... ok
testSectionCell (neuron.tests.test_neuron.NeuronTestCase)
Section.cell() internally referenced as weakref. ... ok
testSectionListIterator (neuron.tests.test_neuron.NeuronTestCase)
As of v8.0, iteration over a SectionList does not change the cas ... ok
test_newobj_err (neuron.tests.test_neuron.NeuronTestCase)
Test deletion of incompletely constructed objects ... NEURON: generate an error
near line 1
ob = new NewObj(1, 2)
^
NewObj[4].execerror("generate a...")
NewObj[4].init(0, 2)
NewObj[3].init(1, 2)
NewObj[2].execute1("ob = new N...", NewObj[2])
and others
ok
testpsection (neuron.tests.test_neuron.NeuronTestCase) ... Syntax:
.. code-block::
python
h.xpanel('name')
h.xpanel('name', [0-1])
h.xpanel()
h.xpanel(x, y)
h.xpanel(scroll)
h.xpanel(scroll, x, y)
Description:
``h.xpanel("name")``
``h.xpanel("name", [0-1])``
Title of a new panel. Every
button, menu, and value between this and a closing ``xpanel()`` command
with no arguments (or placement args) belongs to this panel.
If the form is used with a second argument equal to 1, then
the panel is laid out horizontally. Otherwise the default is vertically.
``h.xpanel()``
``h.xpanel(x, y)``
done constructing the panel. so map it to the screen with position
optionally specified.
``h.xpanel(scroll)``
``h.xpanel(scroll, x, y)``
as above but if the first arg is a number, then the value determines
whether the panel will be inside a scrollbox. Scroll = 0 means a scrollbox
will NOT be used. Scroll = 1 means the panel will be inside a scrollbox.
Scroll = -1 is the default value and whether or not a scrollbox is used
is determined by the number of panel items in comparison with the
value of the panel_scroll property in the nrn.defaults file.
Skipping because NRN_ENABLE_RX3D=False
#NewObj and #Foo in existence 3 6
after del a #NewObj and #Foo in existence 0 0
ok
----------------------------------------------------------------------
Ran 19 tests in 1.777s
OK
$ if [[ ! "${cmake_args[*]}" =~ "NRN_ENABLE_RX3D=OFF" && ! "${cmake_args[*]}" =~ "NRN_ENABLE_CORENEURON=ON" ]]; then
section_end:1706544045:step_script section_start:1706544045:archive_cache Saving cache for successful job
Creating cache mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-jelic/refactor_nrn_sort-1-non_protected...
Runtime platform  arch=arm64 os=darwin pid=1467 revision=43b2dc3d version=15.4.0
./ccache: found 2459 matching files and directories
No URL provided, cache will not be uploaded to shared cache server. Cache will be stored only locally.
Created cache
section_end:1706544050:archive_cache section_start:1706544050:cleanup_file_variables Cleaning up project directory and file based variables
section_end:1706544050:cleanup_file_variables Job succeeded
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1706543539:resolve_secrets Resolving secrets
section_end:1706543539:resolve_secrets section_start:1706543539:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor327825890, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 189119, build ref , job ID 1137106
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189119, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1137106_PROD_P2160_CP6_C3
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1992473
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J1137106_PROD_P2160_CP6_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189119 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189119 --ntasks=1 --jobid=1992473 --cpus-per-task=6 --mem=30750M
section_end:1706543540:prepare_executor section_start:1706543540:prepare_script Preparing environment
Using git from spack modules
Running on r1i6n18 via bbpv1.epfl.ch...
section_end:1706543545:prepare_script section_start:1706543545:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1706543545:get_sources section_start:1706543545:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then
$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command
$ cat parse_description.py
import os
import re
import requests
pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format(
os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'],
os.environ['CI_EXTERNAL_PULL_REQUEST_IID']),
headers={'Accept': 'application/vnd.github.v3+json'})
pr_body = pr_info.json()["body"]
# match something like NEURON_BRANCH=foo/bar
# special case for SPACK_DEPLOYMENT_SUFFIX=foo/bar
pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE)
def parse_term(m):
ref_type = m.group(2).lower()
is_deployment_suffix = ref_type == 'suffix' and m.group(1).lower() == 'spack_deployment'
if ref_type not in {'branch', 'tag', 'ref'} and not is_deployment_suffix: return
print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3))
if pr_body is not None:
for pr_body_line in pr_body.splitlines():
if not pr_body_line.startswith('CI_BRANCHES:'): continue
for config_term in pr_body_line[12:].split(','):
pat.sub(parse_term, config_term)
$ (module load unstable python-dev; python parse_description.py) > input_variables.env
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.27.p1.hmpt
$ else
$ cat input_variables.env
$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command
$ set -o allexport
$ . input_variables.env
$ set +o allexport
$ unset MODULEPATH
$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh
$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env
$ echo Preparing to clone Spack into ${PWD}
Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189119/J1137106
$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then
$ echo Checking out the ${SPACK_BRANCH} of Spack...
Checking out the develop of Spack...
$ module load unstable git
$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack
Cloning into 'spack'...
Updating files: 19% (2017/10351) Updating files: 20% (2071/10351) Updating files: 21% (2174/10351) Updating files: 22% (2278/10351) Updating files: 23% (2381/10351) Updating files: 24% (2485/10351) Updating files: 25% (2588/10351) Updating files: 26% (2692/10351) Updating files: 27% (2795/10351) Updating files: 28% (2899/10351) Updating files: 29% (3002/10351) Updating files: 30% (3106/10351) Updating files: 31% (3209/10351) Updating files: 32% (3313/10351) Updating files: 33% (3416/10351) Updating files: 33% (3493/10351) Updating files: 34% (3520/10351) Updating files: 35% (3623/10351) Updating files: 36% (3727/10351) Updating files: 37% (3830/10351) Updating files: 38% (3934/10351) Updating files: 39% (4037/10351) Updating files: 40% (4141/10351) Updating files: 41% (4244/10351) Updating files: 42% (4348/10351) Updating files: 43% (4451/10351) Updating files: 44% (4555/10351) Updating files: 45% (4658/10351) Updating files: 46% (4762/10351) Updating files: 47% (4865/10351) Updating files: 48% (4969/10351) Updating files: 49% (5072/10351) Updating files: 50% (5176/10351) Updating files: 50% (5208/10351) Updating files: 51% (5280/10351) Updating files: 52% (5383/10351) Updating files: 53% (5487/10351) Updating files: 54% (5590/10351) Updating files: 55% (5694/10351) Updating files: 56% (5797/10351) Updating files: 57% (5901/10351) Updating files: 58% (6004/10351) Updating files: 59% (6108/10351) Updating files: 60% (6211/10351) Updating files: 60% (6307/10351) Updating files: 61% (6315/10351) Updating files: 62% (6418/10351) Updating files: 63% (6522/10351) Updating files: 64% (6625/10351) Updating files: 65% (6729/10351) Updating files: 66% (6832/10351) Updating files: 67% (6936/10351) Updating files: 68% (7039/10351) Updating files: 69% (7143/10351) Updating files: 70% (7246/10351) Updating files: 71% (7350/10351) Updating files: 72% (7453/10351) Updating files: 73% (7557/10351) Updating files: 74% (7660/10351) Updating files: 75% (7764/10351) Updating files: 76% (7867/10351) Updating files: 77% (7971/10351) Updating files: 77% (8032/10351) Updating files: 78% (8074/10351) Updating files: 79% (8178/10351) Updating files: 80% (8281/10351) Updating files: 81% (8385/10351) Updating files: 82% (8488/10351) Updating files: 83% (8592/10351) Updating files: 84% (8695/10351) Updating files: 85% (8799/10351) Updating files: 86% (8902/10351) Updating files: 87% (9006/10351) Updating files: 88% (9109/10351) Updating files: 89% (9213/10351) Updating files: 90% (9316/10351) Updating files: 91% (9420/10351) Updating files: 91% (9424/10351) Updating files: 92% (9523/10351) Updating files: 93% (9627/10351) Updating files: 94% (9730/10351) Updating files: 95% (9834/10351) Updating files: 96% (9937/10351) Updating files: 97% (10041/10351) Updating files: 98% (10144/10351) Updating files: 98% (10241/10351) Updating files: 99% (10248/10351) Updating files: 100% (10351/10351) Updating files: 100% (10351/10351), done.
$ export SPACK_ROOT=${PWD}/spack
$ export SPACK_RESOLVED_COMMIT=$(cd "${SPACK_ROOT}" && git rev-parse HEAD)
$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"
$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"
$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env
$ echo "SPACK_RESOLVED_COMMIT=${SPACK_RESOLVED_COMMIT}" >> spack_clone_variables.env
$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env
$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189119/J1137106_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack ${SPACK_EXTRA_FLAGS} configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env
spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED BLUECONFIGS --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=jelic/refactor_nrn_sort SPACK_RESOLVED_COMMIT=567c676fb2d5dd794244e4cf2555244215135fef GITLAB_PIPELINES_BRANCH=main NEURON_COMMIT=2a7de92b48a27660329462da0b5302dbe1e8d537 NMODL_BRANCH=master LIBSONATA_REPORT_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master BLUECONFIGS_BRANCH=main
==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=jelic/refactor_nrn_sort
==> SPACK_RESOLVED: ignoring SPACK_RESOLVED_COMMIT=567c676fb2d5dd794244e4cf2555244215135fef
==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main
==> SPACK: ignoring SPACK_BRANCH=develop
==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master
==> BLUECONFIGS: ignoring BLUECONFIGS_BRANCH=main
==> nmodl: resolved branch master to bb4dfd2fbc5209bb1893d3c681157db743ca1dfc
==> libsonata-report: resolved branch master to ab8958769a65c7ddea10ba6b318252653cce86c2
==> neuron@develop: remove branch/commit/tag
==> neuron@develop: use commit="2a7de92b48a27660329462da0b5302dbe1e8d537"
==> neuron@develop: add preferred=True
==> nmodl@develop: remove branch/commit/tag
==> nmodl@develop: use commit="bb4dfd2fbc5209bb1893d3c681157db743ca1dfc"
==> nmodl@develop: add preferred=True
==> libsonata-report@develop: remove branch/commit/tag
==> libsonata-report@develop: use commit="ab8958769a65c7ddea10ba6b318252653cce86c2"
==> libsonata-report@develop: add preferred=True
$ (cd "${SPACK_ROOT}" && git diff)
diff --git a/bluebrain/repo-bluebrain/packages/libsonata-report/package.py b/bluebrain/repo-bluebrain/packages/libsonata-report/package.py
index 6944ddee..add5c47a 100644
--- a/bluebrain/repo-bluebrain/packages/libsonata-report/package.py
+++ b/bluebrain/repo-bluebrain/packages/libsonata-report/package.py
@@ -17,7 +17,7 @@ class LibsonataReport(CMakePackage):
homepage = "https://github.com/BlueBrain/libsonatareport"
git = "https://github.com/BlueBrain/libsonatareport.git"
- version("develop", branch="master", submodules=False, get_full_repo=True)
+ version('develop', preferred=True, commit='ab8958769a65c7ddea10ba6b318252653cce86c2', submodules=False, get_full_repo=True) # old: branch="master"
version("1.2.2", tag="1.2.2", submodules=False)
version("1.2.1", tag="1.2.1", submodules=False)
version("1.2", tag="1.2", submodules=False)
diff --git a/bluebrain/repo-bluebrain/packages/nmodl/package.py b/bluebrain/repo-bluebrain/packages/nmodl/package.py
index eaf08b46..620b735b 100644
--- a/bluebrain/repo-bluebrain/packages/nmodl/package.py
+++ b/bluebrain/repo-bluebrain/packages/nmodl/package.py
@@ -13,7 +13,7 @@ class Nmodl(CMakePackage):
url = "https://github.com/BlueBrain/nmodl.git"
git = "https://github.com/BlueBrain/nmodl.git"
- version("develop", branch="master", submodules=True)
+ version('develop', preferred=True, commit='bb4dfd2fbc5209bb1893d3c681157db743ca1dfc', submodules=True) # old: branch="master"
version("llvm", branch="llvm", submodules=True)
version("0.7.a2", commit="6f6db3b6f25e066db46d8a5fc85a1697363b995c")
version("0.7.a1", commit="2ce4a2b91dfcfe6356b6a5003c4e99b8711564ee")
diff --git a/bluebrain/repo-patches/packages/neuron/package.py b/bluebrain/repo-patches/packages/neuron/package.py
index b0eb4d81..858a0120 100644
--- a/bluebrain/repo-patches/packages/neuron/package.py
+++ b/bluebrain/repo-patches/packages/neuron/package.py
@@ -13,7 +13,7 @@ class Neuron(BuiltinNeuron):
__doc__ = BuiltinNeuron.__doc__
# BBP specific version
- version("develop", branch="master")
+ version('develop', preferred=True, commit='2a7de92b48a27660329462da0b5302dbe1e8d537') # old: branch="master"
version("9.0.a15", commit="f64b609")
version("9.0.a14", commit="bd9426d9")
version("9.0.a13", commit="3bbdd8da")
$ cat commit-mapping.env
NEURON_COMMIT=2a7de92b48a27660329462da0b5302dbe1e8d537
NMODL_COMMIT=bb4dfd2fbc5209bb1893d3c681157db743ca1dfc
LIBSONATA_REPORT_COMMIT=ab8958769a65c7ddea10ba6b318252653cce86c2
$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env
$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env
$ cat commit-mapping.env >> spack_clone_variables.env
$ spack ${SPACK_EXTRA_FLAGS} spec -IL ninja
==> Warning: Expected user 904556 to own /nvme/bbpcihpcproj12, but it is owned by 0
==> Bootstrapping clingo from pre-built binaries
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-prqkzynv2nwko5mktitebgkeumuxkveu.spec.json
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-prqkzynv2nwko5mktitebgkeumuxkveu.spack
==> Installing "clingo-bootstrap@spack%gcc@10.2.1~docs~ipo+python+static_libstdcpp build_type=Release arch=linux-centos7-x86_64" from a buildcache
Input spec
--------------------------------
- ninja
Concretized
--------------------------------
[^] zk4skoxmkt7do2mk5lgnesas7ol3hhgg ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env
$ spack ${SPACK_EXTRA_FLAGS} config --scope site add "config:ccache:true"
$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env
$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> commit-mapping.env
$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> spack_clone_variables.env
section_end:1706543656:step_script section_start:1706543656:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=8345 revision=58ba2b95 version=14.2.0
commit-mapping.env: found 1 matching files and directories
input_variables.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1137106 responseStatus=201 Created token=64_S_7Z9
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=8392 revision=58ba2b95 version=14.2.0
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1137106 responseStatus=201 Created token=64_S_7Z9
section_end:1706543658:upload_artifacts_on_success section_start:1706543658:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1706543659:cleanup_file_variables Job succeeded
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
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