Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/118457 (:white_check_mark:) running on GitHub PR neuronsimulator/nrn#2344.

build-neuron-mod2c-intel-shared.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1682530031:resolve_secrets
Resolving secrets
section_end:1682530031:resolve_secrets
section_start:1682530031:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1718221992, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 118457, build ref 2e15478ea7527495aa989eaf5bebdcb6a9ba2a26, job ID 674218
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J674218_PROD_P2160_CP1_C2
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1430364
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J674218_PROD_P2160_CP1_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --ntasks=2 --jobid=1430364 --cpus-per-task=8 --mem=76G     
section_end:1682530033:prepare_executor
section_start:1682530033:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n5 via bbpv1.epfl.ch...
section_end:1682530036:prepare_script
section_start:1682530036:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1682530037:get_sources
section_start:1682530037:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:mod2c:intel:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=250665 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1682530043:restore_cache
section_start:1682530043:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for spack_setup (674215)...
Runtime platform                                    arch=amd64 os=linux pid=251109 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=674215 responseStatus=200 OK token=64_gQZPg
section_end:1682530044:download_artifacts
section_start:1682530044:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674218/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674218/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674218/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674218/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674218/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674218/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457/J674218_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%intel ~rx3d~caliper~gpu+coreneuron~legacy-unit~nmodl~openmp+shared+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1430364/ccache
  Primary config:   /nvme/bbpcihpcproj12/1430364/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Wed Apr 26 19:27:29 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (90.26 %)
  Files:            17671
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%intel~caliper+coreneuron~gpu~legacy-unit~nmodl~openmp~rx3d+shared+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy

Concretized
--------------------------------
 -   xyehqj5  neuron@develop%intel@2021.7.1+binary~caliper~codegenopt+coreneuron~gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~nmodl~openmp+python+report~rx3d+shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   joqmehj      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  dxtrrtm          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  cek44ke              ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  d7dkmvv              ^py-flit-core@3.7.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  zbqiukk          ^py-setuptools-scm@7.0.5%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  ihcuyox              ^py-typing-extensions@4.3.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
==> Installing libsonata-report-develop-joqmehjuo73qkeoz5oufnnerxl3y6ick
==> No binary for libsonata-report-develop-joqmehjuo73qkeoz5oufnnerxl3y6ick found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-develop-joqmehjuo73qkeoz5oufnnerxl3y6ick
  Fetch: 2.36s.  Build: 5.35s.  Total: 7.71s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/libsonata-report-develop-joqmeh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-flit-core-3.7.1-d7dkmv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-typing-extensions-4.3.0-ihcuyo
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-scm-7.0.5-zbqiuk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
==> Installing neuron-develop-xyehqj5ncmcdmgrzxmfdvjbsmzwir57u
==> No binary for neuron-develop-xyehqj5ncmcdmgrzxmfdvjbsmzwir57u found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-xyehqj5ncmcdmgrzxmfdvjbsmzwir57u
  Fetch: 38.97s.  Build: 17m 50.04s.  Total: 18m 29.01s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_intel-2021.7.1-skylake/neuron-develop-xyehqj
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be xyehqj5ncmcdmgrzxmfdvjbsmzwir57u
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1430364/ccache
  Primary config:           /nvme/bbpcihpcproj12/1430364/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Wed Apr 26 19:48:06 2023
  Hits:                       883 /  983 (89.83 %)
    Direct:                   520 /  992 (52.42 %)
    Preprocessed:             363 /  466 (77.90 %)
  Misses:                     100
    Direct:                   472
    Preprocessed:             103
  Uncacheable:                173
Primary storage:
  Hits:                      1752 / 1978 (88.57 %)
  Misses:                     226
  Cache size (GB):           0.46 / 0.51 (89.34 %)
  Files:                    17414
  Cleanups:                     1
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         138
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:               18
  Preprocessing failed:         6
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1682531289:step_script
section_start:1682531289:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:mod2c:intel:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=283908 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Amod2c%3Aintel%3Ashared-1-non_protected 
Created cache
section_end:1682531315:archive_cache
section_start:1682531315:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=284545 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=674218 responseStatus=201 Created token=64_gQZPg
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=284593 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=674218 responseStatus=201 Created token=64_gQZPg
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=284631 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=674218 responseStatus=201 Created token=64_gQZPg
section_end:1682531317:upload_artifacts_on_success
section_start:1682531317:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1682531318:cleanup_file_variables
Job succeeded

build-neuron-mod2c-nvhpc-acc-shared.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1682530032:resolve_secrets
Resolving secrets
section_end:1682530032:resolve_secrets
section_start:1682530032:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor4002882541, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 118457, build ref 2e15478ea7527495aa989eaf5bebdcb6a9ba2a26, job ID 674221
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J674221_PROD_P2160_CP2_C4
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1430365
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J674221_PROD_P2160_CP2_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --ntasks=2 --jobid=1430365 --cpus-per-task=8 --mem=76G     
section_end:1682530035:prepare_executor
section_start:1682530035:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n5 via bbpv1.epfl.ch...
section_end:1682530039:prepare_script
section_start:1682530039:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1682530040:get_sources
section_start:1682530040:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:mod2c:nvhpc:acc:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=250890 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1682530046:restore_cache
section_start:1682530046:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for spack_setup (674215)...
Runtime platform                                    arch=amd64 os=linux pid=252071 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=674215 responseStatus=200 OK token=64_YHwfT
section_end:1682530047:download_artifacts
section_start:1682530047:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674221/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674221/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674221/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674221/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674221/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674221/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457/J674221_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~nmodl~openmp+shared+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1430365/ccache
  Primary config:   /nvme/bbpcihpcproj12/1430365/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Wed Apr 26 19:27:32 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.47 / 0.51 (91.55 %)
  Files:            25778
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~nmodl~openmp~rx3d+shared+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy

Concretized
--------------------------------
 -   hifxqzm  neuron@develop%nvhpc@23.1+binary~caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~nmodl~openmp+python+report~rx3d+shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   joqmehj      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  dxtrrtm          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  cek44ke              ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  d7dkmvv              ^py-flit-core@3.7.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  zbqiukk          ^py-setuptools-scm@7.0.5%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  ihcuyox              ^py-typing-extensions@4.3.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-flit-core-3.7.1-d7dkmv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-typing-extensions-4.3.0-ihcuyo
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/libsonata-report-develop-joqmeh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-scm-7.0.5-zbqiuk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
==> Installing neuron-develop-hifxqzmog4bmg6bsloqo7kwm3k7ncn4b
==> No binary for neuron-develop-hifxqzmog4bmg6bsloqo7kwm3k7ncn4b found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-hifxqzmog4bmg6bsloqo7kwm3k7ncn4b
  Fetch: 20.38s.  Build: 24m 41.20s.  Total: 25m 1.58s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_nvhpc-23.1-skylake/neuron-develop-hifxqz
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be hifxqzmog4bmg6bsloqo7kwm3k7ncn4b
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1430365/ccache
  Primary config:           /nvme/bbpcihpcproj12/1430365/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Wed Apr 26 19:54:49 2023
  Hits:                       861 / 1060 (81.23 %)
    Direct:                   498 /  969 (51.39 %)
    Preprocessed:             363 /  465 (78.06 %)
  Misses:                     199
    Direct:                   471
    Preprocessed:             102
  Uncacheable:                150
Primary storage:
  Hits:                      1708 / 1932 (88.41 %)
  Misses:                     224
  Cache size (GB):           0.47 / 0.51 (92.05 %)
  Files:                    26085
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         124
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         6
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1682531693:step_script
section_start:1682531693:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:mod2c:nvhpc:acc:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=7442 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Amod2c%3Anvhpc%3Aacc%3Ashared-1-non_protected 
Created cache
section_end:1682531717:archive_cache
section_start:1682531717:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=8433 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=674221 responseStatus=201 Created token=64_YHwfT
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=8473 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=674221 responseStatus=201 Created token=64_YHwfT
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=8520 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=674221 responseStatus=201 Created token=64_YHwfT
section_end:1682531719:upload_artifacts_on_success
section_start:1682531719:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1682531720:cleanup_file_variables
Job succeeded

build-neuron-nmodl-intel-legacy.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1682530346:resolve_secrets
Resolving secrets
section_end:1682530346:resolve_secrets
section_start:1682530346:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1380468082, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 118457, build ref 2e15478ea7527495aa989eaf5bebdcb6a9ba2a26, job ID 674219
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J674219_PROD_P2160_CP0_C0
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1430383
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J674219_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --ntasks=2 --jobid=1430383 --cpus-per-task=8 --mem=76G     
section_end:1682530347:prepare_executor
section_start:1682530347:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n5 via bbpv1.epfl.ch...
section_end:1682530351:prepare_script
section_start:1682530351:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1682530353:get_sources
section_start:1682530353:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=261033 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1682530359:restore_cache
section_start:1682530359:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (674217)...
Runtime platform                                    arch=amd64 os=linux pid=261679 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=674217 responseStatus=200 OK token=64_-xz8H
section_end:1682530360:download_artifacts
section_start:1682530360:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674219/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674219/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674219/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674219/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674219/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674219/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457/J674219_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%intel ~rx3d~caliper~gpu+coreneuron~legacy-unit+nmodl~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/dkcbg4h3xazskqqhocng7wm3nekj3l32
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1430383/ccache
  Primary config:   /nvme/bbpcihpcproj12/1430383/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Wed Apr 26 19:32:44 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (89.88 %)
  Files:            18843
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%intel~caliper+coreneuron~gpu~legacy-unit+nmodl~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   346rwn2  neuron@develop%intel@2021.7.1+binary~caliper~codegenopt+coreneuron~gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+nmodl~openmp+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  joqmehj      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  dxtrrtm          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  dkcbg4h      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  wqbvd7o          ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  cek44ke          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  blf35ks          ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-2.13.8-wqbvd7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.11.2-blf35k
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/libsonata-report-develop-joqmeh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/nmodl-develop-dkcbg4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
==> Installing neuron-develop-346rwn2dxxpykr2qdrob5bunqnmn7sgh
==> No binary for neuron-develop-346rwn2dxxpykr2qdrob5bunqnmn7sgh found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-346rwn2dxxpykr2qdrob5bunqnmn7sgh
  Fetch: 42.88s.  Build: 42m 5.82s.  Total: 42m 48.70s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_intel-2021.7.1-skylake/neuron-develop-346rwn
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be 346rwn2dxxpykr2qdrob5bunqnmn7sgh
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1430383/ccache
  Primary config:           /nvme/bbpcihpcproj12/1430383/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Wed Apr 26 20:18:08 2023
  Hits:                       840 /  940 (89.36 %)
    Direct:                   310 /  949 (32.67 %)
    Preprocessed:             530 /  633 (83.73 %)
  Misses:                     100
    Direct:                   639
    Preprocessed:             103
  Uncacheable:                140
Primary storage:
  Hits:                      1499 / 1892 (79.23 %)
  Misses:                     393
  Cache size (GB):           0.46 / 0.51 (89.44 %)
  Files:                    18902
  Cleanups:                     1
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         115
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         6
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1682533091:step_script
section_start:1682533091:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:intel:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=33736 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected 
Created cache
section_end:1682533114:archive_cache
section_start:1682533114:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=34351 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=674219 responseStatus=201 Created token=64_-xz8H
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=34394 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=674219 responseStatus=201 Created token=64_-xz8H
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=34444 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=674219 responseStatus=201 Created token=64_-xz8H
section_end:1682533115:upload_artifacts_on_success
section_start:1682533115:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1682533117:cleanup_file_variables
Job succeeded

build-neuron-nmodl-intel-shared.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1682530346:resolve_secrets
Resolving secrets
section_end:1682530346:resolve_secrets
section_start:1682530346:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor67440427, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 118457, build ref 2e15478ea7527495aa989eaf5bebdcb6a9ba2a26, job ID 674220
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J674220_PROD_P2160_CP3_C1
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1430384
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J674220_PROD_P2160_CP3_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --ntasks=2 --jobid=1430384 --cpus-per-task=8 --mem=76G     
section_end:1682530350:prepare_executor
section_start:1682530350:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n5 via bbpv1.epfl.ch...
section_end:1682530354:prepare_script
section_start:1682530354:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1682530356:get_sources
section_start:1682530356:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=261473 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1682530362:restore_cache
section_start:1682530362:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (674217)...
Runtime platform                                    arch=amd64 os=linux pid=262551 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=674217 responseStatus=200 OK token=64_8AZgR
section_end:1682530363:download_artifacts
section_start:1682530363:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674220/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674220/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674220/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674220/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674220/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674220/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457/J674220_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%intel ~rx3d~caliper~gpu+coreneuron~legacy-unit+nmodl~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/dkcbg4h3xazskqqhocng7wm3nekj3l32
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1430384/ccache
  Primary config:   /nvme/bbpcihpcproj12/1430384/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Wed Apr 26 19:32:48 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.47 / 0.51 (91.07 %)
  Files:            18623
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%intel~caliper+coreneuron~gpu~legacy-unit+nmodl~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   h6bwrdr  neuron@develop%intel@2021.7.1+binary~caliper~codegenopt+coreneuron~gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+nmodl~openmp+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  joqmehj      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  dxtrrtm          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  dkcbg4h      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  wqbvd7o          ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  cek44ke          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  blf35ks          ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-2.13.8-wqbvd7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.11.2-blf35k
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/libsonata-report-develop-joqmeh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/nmodl-develop-dkcbg4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
==> Installing neuron-develop-h6bwrdrv4m5thcjcwcniatw3wubyszut
==> No binary for neuron-develop-h6bwrdrv4m5thcjcwcniatw3wubyszut found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-h6bwrdrv4m5thcjcwcniatw3wubyszut
  Fetch: 45.05s.  Build: 43m 18.30s.  Total: 44m 3.35s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_intel-2021.7.1-skylake/neuron-develop-h6bwrd
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be h6bwrdrv4m5thcjcwcniatw3wubyszut
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1430384/ccache
  Primary config:           /nvme/bbpcihpcproj12/1430384/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Wed Apr 26 20:19:22 2023
  Hits:                       840 /  940 (89.36 %)
    Direct:                   310 /  949 (32.67 %)
    Preprocessed:             530 /  633 (83.73 %)
  Misses:                     100
    Direct:                   639
    Preprocessed:             103
  Uncacheable:                149
Primary storage:
  Hits:                      1499 / 1892 (79.23 %)
  Misses:                     393
  Cache size (GB):           0.47 / 0.51 (91.90 %)
  Files:                    19004
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         124
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         6
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1682533165:step_script
section_start:1682533165:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:intel:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=37955 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Ashared-1-non_protected 
Created cache
section_end:1682533186:archive_cache
section_start:1682533186:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=38405 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=674220 responseStatus=201 Created token=64_8AZgR
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=38446 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=674220 responseStatus=201 Created token=64_8AZgR
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=38483 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=674220 responseStatus=201 Created token=64_8AZgR
section_end:1682533188:upload_artifacts_on_success
section_start:1682533188:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1682533189:cleanup_file_variables
Job succeeded

build-neuron-nmodl-nvhpc-acc-legacy.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1682530347:resolve_secrets
Resolving secrets
section_end:1682530347:resolve_secrets
section_start:1682530347:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2353925920, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 118457, build ref 2e15478ea7527495aa989eaf5bebdcb6a9ba2a26, job ID 674222
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J674222_PROD_P2160_CP4_C8
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1430385
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J674222_PROD_P2160_CP4_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --ntasks=2 --jobid=1430385 --cpus-per-task=8 --mem=76G     
section_end:1682530350:prepare_executor
section_start:1682530350:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n7 via bbpv1.epfl.ch...
section_end:1682530354:prepare_script
section_start:1682530354:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1682530356:get_sources
section_start:1682530356:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=70596 revision=58ba2b95 version=14.2.0
Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected 
Successfully extracted cache
section_end:1682530363:restore_cache
section_start:1682530363:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (674217)...
Runtime platform                                    arch=amd64 os=linux pid=71907 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=674217 responseStatus=200 OK token=64_xxKBU
section_end:1682530365:download_artifacts
section_start:1682530365:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674222/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674222/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674222/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674222/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674222/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674222/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457/J674222_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit+nmodl~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/dkcbg4h3xazskqqhocng7wm3nekj3l32
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1430385/ccache
  Primary config:   /nvme/bbpcihpcproj12/1430385/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Wed Apr 26 19:32:49 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.47 / 0.51 (91.32 %)
  Files:            22742
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit+nmodl~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   waf4jfx  neuron@develop%nvhpc@23.1+binary~caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+nmodl~openmp+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  joqmehj      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  dxtrrtm          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  dkcbg4h      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  wqbvd7o          ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  cek44ke          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  blf35ks          ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-2.13.8-wqbvd7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.11.2-blf35k
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/libsonata-report-develop-joqmeh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/nmodl-develop-dkcbg4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
==> Installing neuron-develop-waf4jfxay53vbqxvuh55xagsn326m5f4
==> No binary for neuron-develop-waf4jfxay53vbqxvuh55xagsn326m5f4 found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-waf4jfxay53vbqxvuh55xagsn326m5f4
  Fetch: 20.91s.  Build: 56m 4.66s.  Total: 56m 25.57s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_nvhpc-23.1-skylake/neuron-develop-waf4jf
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be waf4jfxay53vbqxvuh55xagsn326m5f4
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1430385/ccache
  Primary config:           /nvme/bbpcihpcproj12/1430385/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Wed Apr 26 20:31:41 2023
  Hits:                       840 /  977 (85.98 %)
    Direct:                   310 /  948 (32.70 %)
    Preprocessed:             530 /  632 (83.86 %)
  Misses:                     137
    Direct:                   638
    Preprocessed:             102
  Uncacheable:                140
Primary storage:
  Hits:                      1499 / 1890 (79.31 %)
  Misses:                     391
  Cache size (GB):           0.47 / 0.51 (91.12 %)
  Files:                    22851
  Cleanups:                     1
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         114
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         6
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1682533907:step_script
section_start:1682533907:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=131280 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected 
Created cache
section_end:1682533928:archive_cache
section_start:1682533928:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=131796 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=674222 responseStatus=201 Created token=64_xxKBU
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=131856 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=674222 responseStatus=201 Created token=64_xxKBU
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=131912 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=674222 responseStatus=201 Created token=64_xxKBU
section_end:1682533930:upload_artifacts_on_success
section_start:1682533930:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1682533931:cleanup_file_variables
Job succeeded

build-neuron-nmodl-nvhpc-acc-shared.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1682530347:resolve_secrets
Resolving secrets
section_end:1682530347:resolve_secrets
section_start:1682530347:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2465274403, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 118457, build ref 2e15478ea7527495aa989eaf5bebdcb6a9ba2a26, job ID 674223
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J674223_PROD_P2160_CP5_C9
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1430386
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J674223_PROD_P2160_CP5_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --ntasks=2 --jobid=1430386 --cpus-per-task=8 --mem=76G     
section_end:1682530350:prepare_executor
section_start:1682530350:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n7 via bbpv1.epfl.ch...
section_end:1682530355:prepare_script
section_start:1682530355:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1682530356:get_sources
section_start:1682530356:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=70536 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1682530362:restore_cache
section_start:1682530362:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (674217)...
Runtime platform                                    arch=amd64 os=linux pid=71235 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=674217 responseStatus=200 OK token=64_KJTaa
section_end:1682530363:download_artifacts
section_start:1682530363:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674223/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674223/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674223/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674223/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674223/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674223/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457/J674223_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit+nmodl~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/dkcbg4h3xazskqqhocng7wm3nekj3l32
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1430386/ccache
  Primary config:   /nvme/bbpcihpcproj12/1430386/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Wed Apr 26 19:32:47 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.45 / 0.51 (87.35 %)
  Files:            22869
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit+nmodl~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   qq4kqpj  neuron@develop%nvhpc@23.1+binary~caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+nmodl~openmp+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  joqmehj      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  dxtrrtm          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  dkcbg4h      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  wqbvd7o          ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  cek44ke          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  blf35ks          ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-2.13.8-wqbvd7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.11.2-blf35k
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/libsonata-report-develop-joqmeh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/nmodl-develop-dkcbg4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
==> Installing neuron-develop-qq4kqpjxxqzibyupohojvvb6nmjji73c
==> No binary for neuron-develop-qq4kqpjxxqzibyupohojvvb6nmjji73c found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-qq4kqpjxxqzibyupohojvvb6nmjji73c
  Fetch: 22.81s.  Build: 58m 48.46s.  Total: 59m 11.27s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_nvhpc-23.1-skylake/neuron-develop-qq4kqp
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be qq4kqpjxxqzibyupohojvvb6nmjji73c
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1430386/ccache
  Primary config:           /nvme/bbpcihpcproj12/1430386/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Wed Apr 26 20:34:16 2023
  Hits:                       840 / 1037 (81.00 %)
    Direct:                   310 /  948 (32.70 %)
    Preprocessed:             530 /  632 (83.86 %)
  Misses:                     197
    Direct:                   638
    Preprocessed:             102
  Uncacheable:                149
Primary storage:
  Hits:                      1499 / 1890 (79.31 %)
  Misses:                     391
  Cache size (GB):           0.45 / 0.51 (88.47 %)
  Files:                    23372
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         123
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         6
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1682534060:step_script
section_start:1682534060:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=137526 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Ashared-1-non_protected 
Created cache
section_end:1682534080:archive_cache
section_start:1682534080:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=138092 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=674223 responseStatus=201 Created token=64_KJTaa
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=138153 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=674223 responseStatus=201 Created token=64_KJTaa
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=138205 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=674223 responseStatus=201 Created token=64_KJTaa
section_end:1682534082:upload_artifacts_on_success
section_start:1682534082:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1682534083:cleanup_file_variables
Job succeeded

build-neuron-nmodl-nvhpc-omp-legacy.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1682530348:resolve_secrets
Resolving secrets
section_end:1682530348:resolve_secrets
section_start:1682530348:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2776135739, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 118457, build ref 2e15478ea7527495aa989eaf5bebdcb6a9ba2a26, job ID 674224
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J674224_PROD_P2160_CP6_C10
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1430387
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J674224_PROD_P2160_CP6_C10 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --ntasks=2 --jobid=1430387 --cpus-per-task=8 --mem=76G     
section_end:1682530350:prepare_executor
section_start:1682530350:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n7 via bbpv1.epfl.ch...
section_end:1682530353:prepare_script
section_start:1682530353:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1682530354:get_sources
section_start:1682530354:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=70138 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1682530360:restore_cache
section_start:1682530360:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (674217)...
Runtime platform                                    arch=amd64 os=linux pid=70793 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=674217 responseStatus=200 OK token=64_DqvKs
section_end:1682530361:download_artifacts
section_start:1682530361:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674224/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674224/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674224/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674224/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674224/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674224/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457/J674224_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+nmodl+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/dkcbg4h3xazskqqhocng7wm3nekj3l32
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1430387/ccache
  Primary config:   /nvme/bbpcihpcproj12/1430387/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Wed Apr 26 19:32:46 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (90.20 %)
  Files:            21917
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+nmodl+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^caliper+cuda cuda_arch=70
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   ryreofa  neuron@develop%nvhpc@23.1+binary+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+nmodl+openmp+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  c3723hn      ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake
[^]  pcfmpqe          ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  7yt5klx          ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake
[^]  zttduab              ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  ja6blio          ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  3gsobub          ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  joqmehj      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  dxtrrtm          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  dkcbg4h      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  wqbvd7o          ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  cek44ke          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  blf35ks          ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
[+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-2.13.8-wqbvd7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.11.2-blf35k
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-pcfmpq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/libsonata-report-develop-joqmeh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-c3723h
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/nmodl-develop-dkcbg4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
==> Installing neuron-develop-ryreofaqo57l6fnss7icljyhgqjtb73i
==> No binary for neuron-develop-ryreofaqo57l6fnss7icljyhgqjtb73i found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-ryreofaqo57l6fnss7icljyhgqjtb73i
  Fetch: 21.46s.  Build: 1h 4m 14.95s.  Total: 1h 4m 36.41s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_nvhpc-23.1-skylake/neuron-develop-ryreof
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be ryreofaqo57l6fnss7icljyhgqjtb73i
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1430387/ccache
  Primary config:           /nvme/bbpcihpcproj12/1430387/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Wed Apr 26 20:39:23 2023
  Hits:                       840 /  987 (85.11 %)
    Direct:                   310 /  950 (32.63 %)
    Preprocessed:             530 /  634 (83.60 %)
  Misses:                     147
    Direct:                   640
    Preprocessed:             104
  Uncacheable:                142
Primary storage:
  Hits:                      1499 / 1894 (79.14 %)
  Misses:                     395
  Cache size (GB):           0.46 / 0.51 (89.96 %)
  Files:                    22123
  Cleanups:                     1
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         116
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         6
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1682534364:step_script
section_start:1682534364:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=157182 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected 
Created cache
section_end:1682534387:archive_cache
section_start:1682534387:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=158036 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=674224 responseStatus=201 Created token=64_DqvKs
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=158128 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=674224 responseStatus=201 Created token=64_DqvKs
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=158292 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=674224 responseStatus=201 Created token=64_DqvKs
section_end:1682534389:upload_artifacts_on_success
section_start:1682534389:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1682534390:cleanup_file_variables
Job succeeded

build-neuron-nmodl-nvhpc-omp.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1682530348:resolve_secrets
Resolving secrets
section_end:1682530348:resolve_secrets
section_start:1682530348:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1654838221, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 118457, build ref 2e15478ea7527495aa989eaf5bebdcb6a9ba2a26, job ID 674225
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J674225_PROD_P2160_CP7_C11
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1430388
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J674225_PROD_P2160_CP7_C11 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --ntasks=2 --jobid=1430388 --cpus-per-task=8 --mem=76G     
section_end:1682530349:prepare_executor
section_start:1682530349:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n7 via bbpv1.epfl.ch...
section_end:1682530356:prepare_script
section_start:1682530356:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1682530357:get_sources
section_start:1682530357:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=70688 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1682530363:restore_cache
section_start:1682530363:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (674217)...
Runtime platform                                    arch=amd64 os=linux pid=71570 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=674217 responseStatus=200 OK token=64_KaVC6
section_end:1682530364:download_artifacts
section_start:1682530364:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674225/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674225/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674225/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674225/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674225/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674225/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457/J674225_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+nmodl+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/dkcbg4h3xazskqqhocng7wm3nekj3l32
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1430388/ccache
  Primary config:   /nvme/bbpcihpcproj12/1430388/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Wed Apr 26 19:32:49 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (89.83 %)
  Files:            21311
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+nmodl+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^caliper+cuda cuda_arch=70
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   b5462bl  neuron@develop%nvhpc@23.1+binary+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+nmodl+openmp+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  c3723hn      ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake
[^]  pcfmpqe          ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  7yt5klx          ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake
[^]  zttduab              ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  ja6blio          ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  3gsobub          ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  joqmehj      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  dxtrrtm          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  dkcbg4h      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  wqbvd7o          ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  cek44ke          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  blf35ks          ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
[+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-2.13.8-wqbvd7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.11.2-blf35k
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-pcfmpq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/libsonata-report-develop-joqmeh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-c3723h
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/nmodl-develop-dkcbg4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
==> Installing neuron-develop-b5462blb6nj66yspthfgu3a45g2akal2
==> No binary for neuron-develop-b5462blb6nj66yspthfgu3a45g2akal2 found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-b5462blb6nj66yspthfgu3a45g2akal2
  Fetch: 22.55s.  Build: 1h 4m 14.75s.  Total: 1h 4m 37.30s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_nvhpc-23.1-skylake/neuron-develop-b5462b
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be b5462blb6nj66yspthfgu3a45g2akal2
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1430388/ccache
  Primary config:           /nvme/bbpcihpcproj12/1430388/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Wed Apr 26 20:39:23 2023
  Hits:                       840 /  987 (85.11 %)
    Direct:                   310 /  950 (32.63 %)
    Preprocessed:             530 /  634 (83.60 %)
  Misses:                     147
    Direct:                   640
    Preprocessed:             104
  Uncacheable:                142
Primary storage:
  Hits:                      1499 / 1894 (79.14 %)
  Misses:                     395
  Cache size (GB):           0.46 / 0.51 (89.63 %)
  Files:                    21529
  Cleanups:                     1
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         116
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         6
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1682534364:step_script
section_start:1682534364:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=157105 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected 
Created cache
section_end:1682534385:archive_cache
section_start:1682534385:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=157769 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=674225 responseStatus=201 Created token=64_KaVC6
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=157809 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=674225 responseStatus=201 Created token=64_KaVC6
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=157851 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=674225 responseStatus=201 Created token=64_KaVC6
section_end:1682534387:upload_artifacts_on_success
section_start:1682534387:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1682534388:cleanup_file_variables
Job succeeded

build-nmodl.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1682530031:resolve_secrets
Resolving secrets
section_end:1682530031:resolve_secrets
section_start:1682530031:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor188350477, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 118457, build ref 2e15478ea7527495aa989eaf5bebdcb6a9ba2a26, job ID 674217
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J674217_PROD_P2160_CP0_C0
Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1430363
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J674217_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --ntasks=2 --jobid=1430363 --cpus-per-task=8 --mem=76G     
section_end:1682530032:prepare_executor
section_start:1682530032:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n5 via bbpv1.epfl.ch...
section_end:1682530036:prepare_script
section_start:1682530036:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1682530037:get_sources
section_start:1682530037:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:nmodl-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=250596 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1682530043:restore_cache
section_start:1682530043:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for spack_setup (674215)...
Runtime platform                                    arch=amd64 os=linux pid=251006 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=674215 responseStatus=200 OK token=64_cT6zB
section_end:1682530044:download_artifacts
section_start:1682530044:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674217/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674217/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674217/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674217/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674217/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674217/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457/J674217_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install nmodl%gcc ~legacy-unit  
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1430363/ccache
  Primary config:   /nvme/bbpcihpcproj12/1430363/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Wed Apr 26 19:27:28 2023
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.45 / 0.51 (88.22 %)
  Files:             909
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   nmodl%gcc~legacy-unit

Concretized
--------------------------------
 -   dkcbg4h  nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  wqbvd7o      ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to      ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  cek44ke      ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  blf35ks      ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck      ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f          ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb          ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  pi3gdaj      ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h          ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki              ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  d7dkmvv                  ^py-flit-core@3.7.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  zbqiukk          ^py-setuptools-scm@7.0.5%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  ihcuyox              ^py-typing-extensions@4.3.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  d4xzk5t      ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub          ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  dxtrrtm      ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.11.2-blf35k
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-2.13.8-wqbvd7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-flit-core-3.7.1-d7dkmv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-typing-extensions-4.3.0-ihcuyo
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-scm-7.0.5-zbqiuk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
==> Installing nmodl-develop-dkcbg4h3xazskqqhocng7wm3nekj3l32
==> No binary for nmodl-develop-dkcbg4h3xazskqqhocng7wm3nekj3l32 found: installing from source
==> No patches needed for nmodl
==> nmodl: Executing phase: 'cmake'
==> nmodl: Executing phase: 'build'
==> nmodl: Executing phase: 'install'
==> nmodl: Successfully installed nmodl-develop-dkcbg4h3xazskqqhocng7wm3nekj3l32
  Fetch: 47.50s.  Build: 2m 26.14s.  Total: 3m 13.65s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/software/install_gcc-12.2.0-skylake/nmodl-develop-dkcbg4
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be dkcbg4h3xazskqqhocng7wm3nekj3l32
$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}
$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Summary:
  Cache directory:    /nvme/bbpcihpcproj12/1430363/ccache
  Primary config:     /nvme/bbpcihpcproj12/1430363/ccache/ccache.conf
  Secondary config:   /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:      Wed Apr 26 19:31:50 2023
  Hits:                130 /  132 (98.48 %)
    Direct:             28 /  132 (21.21 %)
    Preprocessed:      102 /  104 (98.08 %)
  Misses:                2
    Direct:            104
    Preprocessed:        2
  Uncacheable:          26
Primary storage:
  Hits:                158 /  264 (59.85 %)
  Misses:              106
  Cache size (GB):    0.45 / 0.51 (88.25 %)
  Files:               913
Uncacheable:
  Called for linking:   25
  No input file:         1
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1682530311:step_script
section_start:1682530311:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:nmodl-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=258085 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected 
Created cache
section_end:1682530338:archive_cache
section_start:1682530338:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=259445 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=674217 responseStatus=201 Created token=64_cT6zB
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=259497 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=674217 responseStatus=201 Created token=64_cT6zB
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=259540 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=674217 responseStatus=201 Created token=64_cT6zB
section_end:1682530341:upload_artifacts_on_success
section_start:1682530341:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1682530342:cleanup_file_variables
Job succeeded

GitLab logs for neuronsimulator-nrn#2344

!

mac-m1-cmake-build-cmake-on-off-off-address.txt

Running with gitlab-runner 15.4.0 (43b2dc3d)
  on macos-arm64 vGzz-bdp
section_start:1682529930:resolve_secrets
Resolving secrets
section_end:1682529930:resolve_secrets
section_start:1682529930:prepare_executor
Preparing the "shell" executor
Using Shell executor...
section_end:1682529930:prepare_executor
section_start:1682529930:prepare_script
Preparing environment
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1682529930:prepare_script
section_start:1682529930:get_sources
Getting source from Git repository
Fetching changes with git depth set to 20...
Initialized empty Git repository in /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/.git/
Created fresh repository.
Checking out 2e15478e as ramcdougal-patch-2...
Skipping Git submodules setup
section_end:1682529932:get_sources
section_start:1682529932:restore_cache
Restoring cache
Checking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-ramcdougal-patch-2-1-non_protected...
Runtime platform                                    arch=arm64 os=darwin pid=31575 revision=43b2dc3d version=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted. 
Successfully extracted cache
section_end:1682529936:restore_cache
section_start:1682529936:step_script
Executing "step_script" stage of the job script
$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command
$ real_python=$(python3 resolve_shim.py)
$ echo "python3=$(command -v python3) is really ${real_python}"
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.8/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv
$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (22.2.2)
Collecting pip
  Using cached pip-23.1.2-py3-none-any.whl (2.1 MB)
Collecting wheel
  Using cached wheel-0.40.0-py3-none-any.whl (64 kB)
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (65.4.1)
Collecting setuptools
  Using cached setuptools-67.7.2-py3-none-any.whl (1.1 MB)
Collecting setuptools_scm
  Using cached setuptools_scm-7.1.0-py3-none-any.whl (43 kB)
Collecting scikit-build
  Using cached scikit_build-0.17.2-py3-none-any.whl (82 kB)
Collecting matplotlib
  Using cached matplotlib-3.7.1-cp310-cp310-macosx_11_0_arm64.whl (7.3 MB)
Collecting bokeh<3
  Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB)
Collecting ipython
  Using cached ipython-8.12.0-py3-none-any.whl (796 kB)
Collecting cython
  Using cached Cython-0.29.34-py2.py3-none-any.whl (988 kB)
Collecting packaging
  Using cached packaging-23.1-py3-none-any.whl (48 kB)
Collecting pytest
  Using cached pytest-7.3.1-py3-none-any.whl (320 kB)
Collecting pytest-cov
  Using cached pytest_cov-4.0.0-py3-none-any.whl (21 kB)
Collecting mpi4py
  Using cached mpi4py-3.1.4-cp310-cp310-macosx_12_0_arm64.whl
Collecting numpy
  Using cached numpy-1.24.3-cp310-cp310-macosx_11_0_arm64.whl (13.9 MB)
Collecting tomli>=1.0.0
  Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Collecting typing-extensions
  Using cached typing_extensions-4.5.0-py3-none-any.whl (27 kB)
Collecting distro
  Using cached distro-1.8.0-py3-none-any.whl (20 kB)
Collecting kiwisolver>=1.0.1
  Using cached kiwisolver-1.4.4-cp310-cp310-macosx_11_0_arm64.whl (63 kB)
Collecting cycler>=0.10
  Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB)
Collecting contourpy>=1.0.1
  Using cached contourpy-1.0.7-cp310-cp310-macosx_11_0_arm64.whl (229 kB)
Collecting pillow>=6.2.0
  Using cached Pillow-9.5.0-cp310-cp310-macosx_11_0_arm64.whl (3.1 MB)
Collecting pyparsing>=2.3.1
  Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB)
Collecting fonttools>=4.22.0
  Using cached fonttools-4.39.3-py3-none-any.whl (1.0 MB)
Collecting python-dateutil>=2.7
  Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
Collecting tornado>=5.1
  Using cached tornado-6.3.1-cp38-abi3-macosx_10_9_universal2.whl (424 kB)
Collecting PyYAML>=3.10
  Using cached PyYAML-6.0-cp310-cp310-macosx_11_0_arm64.whl (173 kB)
Collecting Jinja2>=2.9
  Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB)
Collecting traitlets>=5
  Using cached traitlets-5.9.0-py3-none-any.whl (117 kB)
Collecting pickleshare
  Using cached pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB)
Collecting pexpect>4.3
  Using cached pexpect-4.8.0-py2.py3-none-any.whl (59 kB)
Collecting matplotlib-inline
  Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB)
Collecting appnope
  Using cached appnope-0.1.3-py2.py3-none-any.whl (4.4 kB)
Collecting backcall
  Using cached backcall-0.2.0-py2.py3-none-any.whl (11 kB)
Collecting prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30
  Using cached prompt_toolkit-3.0.38-py3-none-any.whl (385 kB)
Collecting pygments>=2.4.0
  Using cached Pygments-2.15.1-py3-none-any.whl (1.1 MB)
Collecting stack-data
  Using cached stack_data-0.6.2-py3-none-any.whl (24 kB)
Collecting decorator
  Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB)
Collecting jedi>=0.16
  Using cached jedi-0.18.2-py2.py3-none-any.whl (1.6 MB)
Collecting iniconfig
  Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Collecting pluggy<2.0,>=0.12
  Using cached pluggy-1.0.0-py2.py3-none-any.whl (13 kB)
Collecting exceptiongroup>=1.0.0rc8
  Using cached exceptiongroup-1.1.1-py3-none-any.whl (14 kB)
Collecting coverage[toml]>=5.2.1
  Using cached coverage-7.2.3-cp310-cp310-macosx_11_0_arm64.whl (200 kB)
Collecting parso<0.9.0,>=0.8.0
  Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB)
Collecting MarkupSafe>=2.0
  Using cached MarkupSafe-2.1.2-cp310-cp310-macosx_10_9_universal2.whl (17 kB)
Collecting ptyprocess>=0.5
  Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Collecting wcwidth
  Using cached wcwidth-0.2.6-py2.py3-none-any.whl (29 kB)
Collecting six>=1.5
  Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting executing>=1.2.0
  Using cached executing-1.2.0-py2.py3-none-any.whl (24 kB)
Collecting pure-eval
  Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB)
Collecting asttokens>=2.1.0
  Using cached asttokens-2.2.1-py2.py3-none-any.whl (26 kB)
Installing collected packages: wcwidth, pure-eval, ptyprocess, pickleshare, executing, backcall, appnope, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython
  Attempting uninstall: setuptools
    Found existing installation: setuptools 65.4.1
    Uninstalling setuptools-65.4.1:
      Successfully uninstalled setuptools-65.4.1
  Attempting uninstall: pip
    Found existing installation: pip 22.2.2
    Uninstalling pip-22.2.2:
      Successfully uninstalled pip-22.2.2
Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.2 PyYAML-6.0 appnope-0.1.3 asttokens-2.2.1 backcall-0.2.0 bokeh-2.4.3 contourpy-1.0.7 coverage-7.2.3 cycler-0.11.0 cython-0.29.34 decorator-5.1.1 distro-1.8.0 exceptiongroup-1.1.1 executing-1.2.0 fonttools-4.39.3 iniconfig-2.0.0 ipython-8.12.0 jedi-0.18.2 kiwisolver-1.4.4 matplotlib-3.7.1 matplotlib-inline-0.1.6 mpi4py-3.1.4 numpy-1.24.3 packaging-23.1 parso-0.8.3 pexpect-4.8.0 pickleshare-0.7.5 pillow-9.5.0 pip-23.1.2 pluggy-1.0.0 prompt-toolkit-3.0.38 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.15.1 pyparsing-3.0.9 pytest-7.3.1 pytest-cov-4.0.0 python-dateutil-2.8.2 scikit-build-0.17.2 setuptools-67.7.2 setuptools_scm-7.1.0 six-1.16.0 stack-data-0.6.2 tomli-2.0.1 tornado-6.3.1 traitlets-5.9.0 typing-extensions-4.5.0 wcwidth-0.2.6 wheel-0.40.0
$ export PYTHON=${PWD}/venv/bin/python
$ ${PYTHON} --version
Python 3.10.8
$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"
$ export CXX=${CXX:-g++}
$ export CC=${CC:-gcc}
$ export INSTALL_DIR=$(pwd)/install
$ echo $LANG

$ echo $LC_ALL

$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'
$ cmake_args=(-G Ninja)
$ if [[ -n "${sanitizer}" ]]; then
$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))
$ fi
$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})
$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")
$ mkdir build && cd build
$ echo "Building with ${cmake_args[@]}"
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/venv/bin/python
$ cmake .. "${cmake_args[@]}"
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- Sub-module : missing external/coding-conventions : running git submodule update --init
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions'
Cloning into '/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/external/coding-conventions'...
Submodule path 'external/coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d'
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123'
Cloning into '/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/external/Random123'...
From https://github.com/BlueBrain/Random123
 * branch            b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1'
-- 3rd party project: using Random123 from "external/Random123"
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /usr/bin/bison (found version "2.3") 
-- Found FLEX: /usr/bin/flex (found suitable version "2.6.4", minimum required is "2.6") 
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include  
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1") 
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1") 
-- Found MPI: TRUE (found version "3.1")  
-- Detected OpenMPI 4.1.4
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Building CoreNEURON
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11'
Cloning into '/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/external/CLI11'...
From https://github.com/CLIUtils/CLI11
 * branch            291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2'
-- 3rd party project: using CLI11 from "external/CLI11"
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") 
-- Found Perl: /usr/bin/perl (found version "5.30.3") 
-- Sub-module : missing /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/external/mod2c : running git submodule update --init
Submodule 'external/mod2c' (https://github.com/BlueBrain/mod2c) registered for path 'external/mod2c'
Cloning into '/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/external/mod2c'...
Submodule path 'external/mod2c': checked out '5d79c6cacf40be1456b2f26cdfe1cb515a5e9e8d'
-- mod2c is used as APPLICATION_NAME
-- Found FLEX: /usr/bin/flex (found version "2.6.4") 
-- Boost found, unit tests enabled
-- 
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -std=c++17 -DCORENEURON_BUILD -DNRNMPI=1 -DMPI_NO_CPPBIND=1 -DOMPI_SKIP_MPICXX=1 -DMPICH_SKIP_MPICXX=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -DCORENEURON_USE_LEGACY_UNITS=0 -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type          | SHARED
-- MPI                 | ON
--   DYNAMIC           | OFF
--   INC               | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include
-- OpenMP              | ON
-- Use legacy units    | OFF
-- NMODL               | OFF
-- MOD2CPP PATH        | /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/bin/mod2c_core
-- GPU Support         | OFF
-- Auto Timeout        | ON
-- Wrap exp()          | OFF
-- SplayTree Queue     | ON
-- NetReceive Buffer   | ON
-- Caliper             | OFF
-- Likwid              | OFF
-- Unit Tests          | ON
-- Reporting           | OFF
-- --------------+--------------------------------------------------------------
-- 
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: 
Generating link flags from path /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib
Generating link flags from path /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
-- Sub-module : missing /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/external/catch2 : running git submodule update --init
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2'
Cloning into '/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/external/catch2'...
Submodule path 'external/catch2': checked out 'c4e3767e265808590986d5db6ca1b5532a7f3d13'
-- Found Python module 'pytest' with version(s): 7.3.1
-- Found Python module 'pytest_cov' with version(s): 4.0.0
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata'
Cloning into '/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/test/rxd/testdata'...
From https://github.com/neuronsimulator/rxdtestdata
 * branch            be297655abf0f98be95a051576d43aad23cebbf0 -> FETCH_HEAD
Submodule path 'test/rxd/testdata': checked out 'be297655abf0f98be95a051576d43aad23cebbf0'
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.4
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.4
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::inputpresyn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- Could NOT find OpenSSL, try to set the path to OpenSSL root folder in the system variable OPENSSL_ROOT_DIR (missing: OPENSSL_CRYPTO_LIBRARY OPENSSL_INCLUDE_DIR) 
-- Skipping tqperf test as OpenSSL package not found
-- 
-- Configured NEURON 9.0.0
-- 
-- You can now build NEURON using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
--  Target       |   Description
-- --------------+--------------------------------------------------------------
-- install       | Will install NEURON to: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install
--               | Change the install location of NEURON using:
--               |   cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs          | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall     | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
--  Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER    | /usr/bin/gcc
-- CXX COMPILER  | /usr/bin/g++
-- BUILD_TYPE    | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast)
-- COMPILE FLAGS | -O1 -g -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Shared        | ON
-- Default units | modern units (2019 nist constants)
-- MPI           | ON
--   DYNAMIC     | OFF
--   INC         | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include
--   LIB         | /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib
-- Python        | ON
--   DYNAMIC     | OFF
--   MODULE      | ON
--  python3.10 (default)
--   EXE         | /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/venv/bin/python
--   INC         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10
--   LIB         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline      | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses        | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D          | OFF
-- Interviews    | OFF
-- CoreNEURON    | ON
--   PATH        | /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/coreneuron
--   LINK FLAGS  |  -lcorenrnmech  -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib
--   Legacy Units| OFF
-- Tests         | ON
-- --------------+--------------------------------------------------------------
--  See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
-- 
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build
$ ccache -z
Statistics zeroed
$ ccache -vs 2>/dev/null
Cache directory:    /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf
Stats updated:      Wed Apr 26 19:26:16 2023
Local storage:
  Cache size (GB):  0.35 / 5.00 ( 6.90%)
  Files:            5463
  Hits:                0
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$ cmake --build . --parallel
[0/2] Re-checking globbed directories...
[1/1557] Generating share/nrn/demo/d3init.hoc
[2/1557] Generating share/nrn/demo/demo.hoc
[3/1557] Generating share/nrn/demo/demo.ses
[4/1557] Generating share/nrn/demo/cycle.hoc
[5/1557] Generating share/nrn/demo/dend3.ses
[6/1557] Generating share/nrn/demo/dend3/control.hoc
[7/1557] Generating share/nrn/demo/dend3/dend3.nrn
[8/1557] Generating share/nrn/demo/dend3/syn3.hoc
[9/1557] Generating share/nrn/demo/dynclamp.hoc
[10/1557] Generating share/nrn/demo/dynchan.ses
[11/1557] Generating share/nrn/demo/dynclamp.ses
[12/1557] Generating share/nrn/demo/hh.hoc
[13/1557] Generating share/nrn/demo/hh.ses
[14/1557] Generating share/nrn/demo/nomodel.hoc
[15/1557] Generating share/nrn/demo/pyramid.nrn
[16/1557] Generating share/nrn/demo/pyramid.ses
[17/1557] Generating share/nrn/demo/reconst.hoc
[18/1557] Generating share/nrn/demo/release.hoc
[19/1557] Update hh.mod for CoreNEURON compatibility
[20/1557] Generating share/nrn/demo/release.ses
[21/1557] Generating share/nrn/demo/release/cabpump.mod
[22/1557] Generating share/nrn/demo/release/cachan1.mod
[23/1557] Generating share/nrn/demo/release/camchan.mod
[24/1557] Generating share/nrn/demo/release/capump.mod
[25/1557] Generating share/nrn/demo/release/khhchan.mod
[26/1557] Generating share/nrn/demo/release/invlfire.mod
[27/1557] Generating share/nrn/demo/release/mcna.mod
[28/1557] Generating share/nrn/demo/singhh.ses
[29/1557] Generating share/nrn/demo/release/nachan.mod
[30/1557] Generating share/nrn/demo/singhh.hoc
[31/1557] Generating share/nrn/demo/release/nacaex.mod
[32/1557] Generating share/nrn/demo/release/release.mod
[33/1557] Generating share/nrn/demo/sync/demosync.hoc
[34/1557] Generating share/nrn/demo/singhhchan.hoc
[35/1557] Generating share/nrn/demo/sync/spkplot.hoc
[36/1557] Generating share/nrn/demo/sync/cell.hoc
[37/1557] Generating share/nrn/demo/sync/init.hoc
[38/1557] Generating share/nrn/lib/auditscripts/gettarname
[39/1557] Generating share/nrn/demo/sync/start.ses
[40/1557] Generating share/nrn/demo/sync/synchronize.hoc
[41/1557] Generating share/nrn/demo/testca.hoc
[42/1557] Generating share/nrn/lib/auditscripts/hocaudit.sh
[43/1557] Generating share/nrn/lib/auditscripts/notes
[44/1557] Generating share/nrn/lib/auditscripts/retrieve.sh
[45/1557] Generating share/nrn/lib/auditscripts/saveaudit
[46/1557] Generating share/nrn/lib/helpdict
[47/1557] Generating share/nrn/lib/cleanup
[48/1557] Generating share/nrn/lib/hoc/attshape.hoc
[49/1557] Generating share/nrn/lib/hoc/binfo.hoc
[50/1557] Generating share/nrn/lib/hoc/celbild/celgeom.hoc
[51/1557] Generating share/nrn/lib/hoc/atoltool.hoc
[52/1557] Generating share/nrn/lib/hoc/celbild.hoc
[53/1557] Generating share/nrn/lib/hoc/celbild/celbild1.hoc
[54/1557] Generating share/nrn/lib/hoc/celbild/celmang.hoc
[55/1557] Generating share/nrn/lib/hoc/celbild/celset.hoc
[56/1557] Generating share/nrn/lib/hoc/celbild/celmemb.hoc
[57/1557] Generating share/nrn/lib/hoc/celbild/celtopol.hoc
[58/1557] Generating share/nrn/lib/hoc/celbild/inhomofn.hoc
[59/1557] Generating share/nrn/lib/hoc/celbild/psubset.hoc
[60/1557] Generating share/nrn/lib/hoc/chanbild.hoc
[61/1557] Generating share/nrn/lib/hoc/chanbild/const.hoc
[62/1557] Generating share/nrn/lib/hoc/chanbild/exp.hoc
[63/1557] Generating share/nrn/lib/hoc/chanbild/chanbild1.hoc
[64/1557] Generating share/nrn/lib/hoc/chanbild/ksgate.hoc
[65/1557] Generating share/nrn/lib/hoc/chanbild/gategui.hoc
[66/1557] Generating share/nrn/lib/hoc/chanbild/kstrans.hoc
[67/1557] Generating share/nrn/lib/hoc/chanbild/kschanbg.hoc
[68/1557] Generating share/nrn/lib/hoc/chanbild/kstgui.hoc
[69/1557] Generating share/nrn/lib/hoc/chanbild/ksstate.hoc
[70/1557] Generating share/nrn/lib/hoc/chanbild/linoid.hoc
[71/1557] Generating share/nrn/lib/hoc/chanbild/properties.hoc
[72/1557] Generating share/nrn/lib/hoc/chanbild/sigmoid.hoc
[73/1557] Generating share/nrn/lib/hoc/chanbild/table.hoc
[74/1557] Generating share/nrn/lib/hoc/family.hoc
[75/1557] Generating share/nrn/lib/hoc/corenrn.hoc
[76/1557] Generating share/nrn/lib/hoc/electrod.hoc
[77/1557] Generating share/nrn/lib/hoc/funfit.hoc
[78/1557] Generating share/nrn/lib/hoc/gatherv.hoc
[79/1557] Generating share/nrn/lib/hoc/import3d.hoc
[80/1557] Generating share/nrn/lib/hoc/grapher.hoc
[81/1557] Generating share/nrn/lib/hoc/impedanc.hoc
[82/1557] Generating share/nrn/lib/hoc/import3d/import3d_gui.hoc
[83/1557] Generating share/nrn/lib/hoc/impedanx.hoc
[84/1557] Generating share/nrn/lib/hoc/import3d/import3d_sec.hoc
[85/1557] Generating share/nrn/lib/hoc/import3d/read_nlcda.hoc
[86/1557] Generating share/nrn/lib/hoc/import3d/read_nlcda3.hoc
[87/1557] Generating share/nrn/lib/hoc/import3d/read_morphml.hoc
[88/1557] Generating share/nrn/lib/hoc/import3d/read_nts.hoc
[89/1557] Generating share/nrn/lib/hoc/import3d/read_swc.hoc
[90/1557] Generating share/nrn/lib/hoc/impratio.hoc
[91/1557] Generating share/nrn/lib/hoc/inserter.hoc
[92/1557] Generating share/nrn/lib/hoc/lincir/lincir1.hoc
[93/1557] Generating share/nrn/lib/hoc/lincir/lingraph.hoc
[94/1557] Generating share/nrn/lib/hoc/lincir.hoc
[95/1557] Generating share/nrn/lib/hoc/lincir/linmech.hoc
[96/1557] Generating share/nrn/lib/hoc/lincir/elmbase.hoc
[97/1557] Generating share/nrn/lib/hoc/loadbal.hoc
[98/1557] Generating share/nrn/lib/hoc/logax.hoc
[99/1557] Generating share/nrn/lib/hoc/macload.hoc
[100/1557] Generating share/nrn/lib/hoc/mknrndll.hoc
[101/1557] Generating share/nrn/lib/hoc/movierun.hoc
[102/1557] Generating share/nrn/lib/hoc/mkcurve.hoc
[103/1557] Generating share/nrn/lib/hoc/mulfit.hoc
[104/1557] Generating share/nrn/lib/hoc/mulfit/clampfit.hoc
[105/1557] Generating share/nrn/lib/hoc/mulfit/e_norm.hoc
[106/1557] Generating share/nrn/lib/hoc/mulfit/e_xy.hoc
[107/1557] Generating share/nrn/lib/hoc/modlunit.hoc
[108/1557] Generating share/nrn/lib/hoc/mulfit/e_actpot.hoc
[109/1557] Generating share/nrn/lib/hoc/mulfit/e_y.hoc
[110/1557] Generating share/nrn/lib/hoc/mulfit/eonefunc.hoc
[111/1557] Generating share/nrn/lib/hoc/mulfit/eparmlst.hoc
[112/1557] Generating share/nrn/lib/hoc/mulfit/fitparm.hoc
[113/1557] Generating share/nrn/lib/hoc/mulfit/eonerun.hoc
[114/1557] Generating share/nrn/lib/hoc/mulfit/eoneprim.hoc
[115/1557] Generating share/nrn/lib/hoc/mulfit/mulfit1.hoc
[116/1557] Generating share/nrn/lib/hoc/mulfit/optwrap.hoc
[117/1557] Generating share/nrn/lib/hoc/mulfit/protorun.hoc
[118/1557] Generating share/nrn/lib/hoc/mview.hoc
[119/1557] Generating share/nrn/lib/hoc/mview/allpp.hoc
[120/1557] Generating share/nrn/lib/hoc/mview/allcell.hoc
[121/1557] Generating share/nrn/lib/hoc/mview/distinct.hoc
[122/1557] Generating share/nrn/lib/hoc/mview/artview.hoc
[123/1557] Generating share/nrn/lib/hoc/mview/mview1.hoc
[124/1557] Generating share/nrn/lib/hoc/mview/distinctparm.hoc
[125/1557] Generating share/nrn/lib/hoc/mview/mviewxml.hoc
[126/1557] Generating share/nrn/lib/hoc/mview/mviewgui.hoc
[127/1557] Generating share/nrn/lib/hoc/mview/ncview.hoc
[128/1557] Generating share/nrn/lib/hoc/mview/realcell.hoc
[129/1557] Generating share/nrn/lib/hoc/mview/rcclasses.hoc
[130/1557] Generating share/nrn/lib/hoc/mview/ppanal.hoc
[131/1557] Generating share/nrn/lib/hoc/mview/parmsets.hoc
[132/1557] Generating share/nrn/lib/hoc/mview/parmvals.hoc
[133/1557] Generating share/nrn/lib/hoc/netbild/artcel.hoc
[134/1557] Generating share/nrn/lib/hoc/mview/secanal.hoc
[135/1557] Generating share/nrn/lib/hoc/netbild/grstrlst.hoc
[136/1557] Generating share/nrn/lib/hoc/netbild.hoc
[137/1557] Generating share/nrn/lib/hoc/netbild/edgegui.hoc
[138/1557] Generating share/nrn/lib/hoc/mview/treeview.hoc
[139/1557] Generating share/nrn/lib/hoc/netbild/netdata.hoc
[140/1557] Generating share/nrn/lib/hoc/netbild/netgui.hoc
[141/1557] Generating share/nrn/lib/hoc/netbild/netready.hoc
[142/1557] Generating share/nrn/lib/hoc/netbild/spkplot.hoc
[143/1557] Generating share/nrn/lib/hoc/netbild/syntypes.hoc
[144/1557] Generating share/nrn/lib/hoc/netparmpi.hoc
[145/1557] Generating share/nrn/lib/hoc/noload.hoc
[146/1557] Generating share/nrn/lib/hoc/nrngui.hoc
[147/1557] Generating share/nrn/lib/hoc/nrngui1.hoc
[148/1557] Generating share/nrn/lib/hoc/pcchdir.hoc
[149/1557] Generating share/nrn/lib/hoc/parcom.hoc
[150/1557] Generating share/nrn/lib/hoc/pointbsr.hoc
[151/1557] Generating share/nrn/lib/hoc/pointgrp.hoc
[152/1557] Generating share/nrn/lib/hoc/pointman.hoc
[153/1557] Generating share/nrn/lib/hoc/prcellstate.hoc
[154/1557] Generating share/nrn/lib/hoc/runfit.hoc
[155/1557] Generating share/nrn/lib/hoc/showmech.hoc
[156/1557] Generating share/nrn/lib/hoc/shapebox.hoc
[157/1557] Generating share/nrn/lib/hoc/single.hoc
[158/1557] Generating share/nrn/lib/hoc/single1.hoc
[159/1557] Generating share/nrn/lib/hoc/stdlib.hoc
[160/1557] Generating share/nrn/lib/hoc/subiter.hoc
[161/1557] Generating share/nrn/lib/hoc/thresh.hoc
[162/1557] Generating share/nrn/lib/hoc/stdgui.hoc
[163/1557] Generating share/nrn/lib/hoc/stdrun.hoc
[164/1557] Generating share/nrn/lib/hoc/vecwrap.hoc
[165/1557] Generating share/nrn/lib/hoc/varmeth1.hoc
[166/1557] Generating share/nrn/lib/hoc/wingroup.hoc
[167/1557] Generating share/nrn/lib/hocload.sh
[168/1557] Generating share/nrn/lib/nrn.defaults.in
[169/1557] Generating share/nrn/lib/hoc/vplay.hoc
[170/1557] Generating share/nrn/lib/nrnunits.lib.in
[171/1557] Generating share/nrn/lib/python/neuron/config.py
[172/1557] Generating share/nrn/lib/prologue.id
[173/1557] Generating share/nrn/lib/python/neuron/__init__.py
[174/1557] Generating share/nrn/lib/python/neuron/coreneuron.py
[175/1557] Generating share/nrn/lib/python/neuron/crxd/__init__.py
[176/1557] Generating share/nrn/lib/python/neuron/doc.py
[177/1557] Generating share/nrn/lib/python/neuron/expect_hocerr.py
[178/1557] Generating share/nrn/lib/python/neuron/gui2/__init__.py
[179/1557] Generating share/nrn/lib/python/neuron/gui.py
[180/1557] Generating share/nrn/lib/python/neuron/gui2/config.py
[181/1557] Generating share/nrn/lib/python/neuron/gui2/plotshape.py
[182/1557] Generating share/nrn/lib/python/neuron/gui2/rangevar.py
[183/1557] Generating share/nrn/lib/python/neuron/hclass3.py
[184/1557] Generating share/nrn/lib/python/neuron/neuroml/biophysics.py
[185/1557] Generating share/nrn/lib/python/neuron/neuroml/morphml.py
[186/1557] Generating share/nrn/lib/python/neuron/gui2/setup_threejs.py
[187/1557] Generating share/nrn/lib/python/neuron/gui2/utilities.py
[188/1557] Generating share/nrn/lib/python/neuron/neuroml/__init__.py
[189/1557] Generating share/nrn/lib/python/neuron/neuroml/metadata.py
[190/1557] Generating share/nrn/lib/python/neuron/neuroml/neuroml.py
[191/1557] Generating share/nrn/lib/python/neuron/neuroml/rdxml.py
[192/1557] Generating share/nrn/lib/python/neuron/neuroml/xml2nrn.py
[193/1557] Generating share/nrn/lib/python/neuron/nonvint_block_supervisor.py
[194/1557] Generating share/nrn/lib/python/neuron/rxd/constants.py
[195/1557] Generating share/nrn/lib/python/neuron/rxd/export.py
[196/1557] Generating share/nrn/lib/python/neuron/psection.py
[197/1557] Generating share/nrn/lib/python/neuron/rxd/__init__.py
[198/1557] Generating share/nrn/lib/python/neuron/rxd/dimension3.py
[199/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/FullJoinMorph.py
[200/1557] Generating help_data.dat
[201/1557] Generating share/nrn/lib/python/neuron/rxd/generalizedReaction.py
[202/1557] Generating share/nrn/lib/python/neuron/rxd/geometry.py
[203/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/GeneralizedVoxelization.py
[204/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/__init__.py
[205/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/ctng.pyx
[206/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/graphicsPrimitives.pyx
[207/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/scalarField.py
[208/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/simplevolume_helper.py
[209/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/surface.py
[210/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/triangularMesh.py
[211/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/voxelize.py
[212/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/surface_a.py
[213/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/surfaces.pyx
[214/1557] Generating share/nrn/lib/python/neuron/rxd/geometry3d/voxelize2.py
[215/1557] Generating share/nrn/lib/python/neuron/rxd/gui.py
[216/1557] Generating share/nrn/lib/python/neuron/rxd/initializer.py
[217/1557] Generating share/nrn/lib/python/neuron/rxd/multiCompartmentReaction.py
[218/1557] Generating share/nrn/lib/python/neuron/rxd/node.py
[219/1557] Generating share/nrn/lib/python/neuron/rxd/nodelist.py
[220/1557] Generating share/nrn/lib/python/neuron/rxd/rate.py
[221/1557] Generating share/nrn/lib/python/neuron/rxd/options.py
[222/1557] Generating share/nrn/lib/python/neuron/rxd/plugins.py
[223/1557] Generating share/nrn/lib/python/neuron/rxd/rangevar.py
[224/1557] Generating share/nrn/lib/python/neuron/rxd/reaction.py
[225/1557] Generating share/nrn/lib/python/neuron/rxd/region.py
[226/1557] Generating share/nrn/lib/python/neuron/rxd/rxdmath.py
[227/1557] Generating share/nrn/lib/python/neuron/rxd/rxd.py
[228/1557] Generating share/nrn/lib/python/neuron/rxd/rxdException.py
[229/1557] Generating share/nrn/lib/python/neuron/rxd/rxdsection.py
[230/1557] Generating share/nrn/lib/python/neuron/rxd/species.py
[231/1557] Generating share/nrn/lib/python/neuron/rxdtests/do_test.py
[232/1557] Generating share/nrn/lib/python/neuron/rxd/section1d.py
[233/1557] Generating share/nrn/lib/python/neuron/rxdtests/readme.txt
[234/1557] Generating share/nrn/lib/python/neuron/rxdtests/run_all.py
[235/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/circadian_rhythm.py
[236/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/include_flux3d.py
[237/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/include_flux3d_cvode.py
[238/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/pure_diffusion_3d.py
[239/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/multicompartment_reactions.py
[240/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/pure_diffusion_3d_cvode.py
[241/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/torun.txt
[242/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/IraHH.py
[243/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/c91662.swc
[244/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/ca_pump.py
[245/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/cabuf.py
[246/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/cabuf_fixed_step.py
[247/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_before_sections.py
[248/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_example.py
[249/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_example_cvode.py
[250/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_include_flux.py
[251/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/torun.txt
[252/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_include_flux_cvode.py
[253/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_multi_example.py
[254/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/pump.mod
[255/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh.py
[256/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_multi_example_cvode.py
[257/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_cvode.py
[258/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_morph.py
[259/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_param_cvode.py
[260/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_param.py
[261/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid.py
[262/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_cvode.py
[263/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_change_nthread.py
[264/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_cvode_change_nthread.py
[265/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/pure_diffusion_hybrid_cvode.py
[266/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/pure_diffusion_hybrid.py
[267/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/include_flux_cvode.py
[268/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/torun.txt
[269/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/include_flux.py
[270/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_mebrane_mismatch.py
[271/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions.py
[272/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions_del.py
[273/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/nodes_update.py
[274/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions_with_v.py
[275/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/react_region_specified.py
[276/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/pure_diffusion.py
[277/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/pure_diffusion_cvode.py
[278/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_null_dest.py
[279/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_test.py
[280/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/torun.txt
[281/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/verify_no_initialization_order_issue.py
[282/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_param_test.py
[283/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/caleak.mod
[284/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/cal2.mod
[285/1557] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/torun.txt
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[503/1557] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc
[504/1557] Generating nrniv_py3.10_python_check_sys_stdin.encoding/dump_sys_attr.py
[505/1557] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py
[506/1557] Generating nrniv_py3.10_python_check_sys_stdout.encoding/check_sys_attr.py
[507/1557] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc
[508/1557] Generating nrniv_py3.10_python_check_sys_stdout.encoding/dump_sys_attr.py
[509/1557] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py
[510/1557] Generating nrniv_pydef_python_check_sys_path/check_sys_attr.py
[511/1557] Generating nrniv_pydef_python_check_sys_path/dump_sys_attr.py
[512/1557] Generating nrniv_pydef_nrnpython_check_sys_path/check_sys_attr.hoc
[513/1557] Generating nrniv_pydef_nrnpython_check_sys_prefix/check_sys_attr.hoc
[514/1557] Generating nrniv_pydef_nrnpython_check_sys_path/dump_sys_attr.py
[515/1557] Generating nrniv_pydef_python_check_sys_prefix/dump_sys_attr.py
[516/1557] Generating nrniv_pydef_python_check_sys_prefix/check_sys_attr.py
[517/1557] Generating nrniv_pydef_nrnpython_check_sys_prefix/dump_sys_attr.py
[518/1557] Generating nrniv_pydef_python_check_sys_exec_prefix/check_sys_attr.py
[519/1557] Generating nrniv_pydef_python_check_sys_exec_prefix/dump_sys_attr.py
[520/1557] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc
[521/1557] Linking CXX shared library lib/librxdmath.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[522/1557] Generating nrniv_pydef_python_check_sys_base_prefix/dump_sys_attr.py
[523/1557] Generating nrniv_pydef_python_check_sys_base_prefix/check_sys_attr.py
[524/1557] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/dump_sys_attr.py
[525/1557] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/dump_sys_attr.py
[526/1557] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/check_sys_attr.hoc
[527/1557] cd /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[528/1557] Generating nrniv_pydef_python_check_sys_base_exec_prefix/check_sys_attr.py
[529/1557] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc
[530/1557] Generating nrniv_pydef_python_check_sys_base_exec_prefix/dump_sys_attr.py
[531/1557] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py
[532/1557] Generating nrniv_pydef_python_check_sys_stderr.encoding/check_sys_attr.py
[533/1557] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc
[534/1557] Generating nrniv_pydef_python_check_sys_stderr.encoding/dump_sys_attr.py
[535/1557] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py
[536/1557] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc
[537/1557] Generating nrniv_pydef_python_check_sys_stdin.encoding/check_sys_attr.py
[538/1557] Generating nrniv_pydef_python_check_sys_stdin.encoding/dump_sys_attr.py
[539/1557] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py
[540/1557] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py
[541/1557] Generating nrniv_pydef_python_check_sys_stdout.encoding/check_sys_attr.py
[542/1557] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc
[543/1557] Generating nrniv_pydef_python_check_sys_stdout.encoding/dump_sys_attr.py
[544/1557] Generating ../tests/ringtest/reference_data/spk1.100ms.std.ref
[545/1557] Generating ../tests/testcorenrn/reference/out_conc.spk
[546/1557] Generating ../../compare_test_results.py
[547/1557] Generating ../tests/testcorenrn/reference/out_deriv.spk
[548/1557] Generating ../tests/testcorenrn/reference/out_bbcore.spk
[549/1557] Generating ../tests/testcorenrn/reference/out_gf.spk
[550/1557] Generating ../tests/testcorenrn/reference/out_vecplay.spk
[551/1557] Generating ../tests/testcorenrn/reference/out_patstim.spk
[552/1557] Generating ../tests/testcorenrn/reference/out_kin.spk
[553/1557] Generating ../tests/testcorenrn/reference/out_watch.spk
[554/1557] Generating ../tests/testcorenrn/reference/out_vecevent.spk
[555/1557] Generating ../tests/testcorenrn/reference/out_netstimdirect.spk
[556/1557] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o
[557/1557] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o
[558/1557] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o
[559/1557] Linking CXX executable bin/nocmodl
[560/1557] Generating ../nrnoc/feature.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/feature.cpp
Notice: VERBATIM blocks are not thread safe
[561/1557] Generating ../nrnoc/apcount.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/apcount.cpp
Thread Safe
[562/1557] Generating ../nrnoc/expsyn.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/expsyn.cpp
Thread Safe
[563/1557] Generating ../nrnoc/hh.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/hh.cpp
Thread Safe
    [564/1557] Generating ../nrnoc/intfire1.cpp

Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/intfire1.cpp
Thread Safe
[565/1557] Generating ../nrnoc/netstim.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/netstim.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[566/1557] Generating ../nrnoc/intfire4.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/intfire4.cpp
Thread Safe
[567/1557] Generating ../nrnoc/intfire2.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/intfire2.cpp
Thread Safe
[568/1557] Generating ../nrnoc/exp2syn.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp
Thread Safe
[569/1557] Generating ../nrnoc/passive.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/passive.cpp
Thread Safe
[570/1557] Generating ../nrnoc/pattern.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/pattern.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[571/1557] Generating ../nrnoc/ppmark.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/ppmark.cpp
Thread Safe
[572/1557] Generating ../nrnoc/oclmp.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/oclmp.cpp
Thread Safe
[573/1557] Generating ../nrnoc/stim.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/stim.cpp
Thread Safe
[574/1557] Generating ../nrnoc/syn.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/syn.cpp
Thread Safe
[575/1557] Generating ../nrnoc/svclmp.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/svclmp.cpp
Thread Safe
[576/1557] Generating ../nrnoc/vclmp.cpp
Translating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/src/nrnoc/vclmp.cpp
Notice: VERBATIM blocks are not thread safe
Notice: LINEAR is not thread safe.
[577/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/epsprint.cpp.o
[578/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/checkpnt.cpp.o
[579/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/axis.cpp.o
[580/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/cbwidget.cpp.o
[581/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/bndedval.cpp.o
[582/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/gifimage.cpp.o
[583/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/apwindow.cpp.o
[584/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/fourier.cpp.o
[585/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp.o
[586/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/idraw.cpp.o
[587/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/graphvec.cpp.o
[588/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grmanip.cpp.o
[589/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o
[590/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/graph.cpp.o
[591/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grglyph.cpp.o
[592/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/mlinedit.cpp.o
[593/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o
[594/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/mymath.cpp.o
[595/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/objcmd.cpp.o
[596/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/oc2iv.cpp.o
[597/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/matrix.cpp.o
[598/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocrand.cpp.o
[599/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocbrowsr.cpp.o
[600/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocbox.cpp.o
[601/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ochelp.cpp.o
[602/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocdeck.cpp.o
[603/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o
[604/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocfile.cpp.o
[605/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocpicker.cpp.o
[606/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocnoiv1.cpp.o
[607/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocobserv.cpp.o
[608/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/oclist.cpp.o
[609/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocpointer.cpp.o
[610/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocmatrix.cpp.o
[611/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/octimer.cpp.o
[612/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/rect.cpp.o
[613/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocptrvector.cpp.o
[614/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o
[615/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/rubband.cpp.o
[616/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/scenepic.cpp.o
[617/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/pwman.cpp.o
[618/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/scene.cpp.o
[619/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/utility.cpp.o
[620/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/field.cpp.o
[621/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/xyview.cpp.o
[622/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/xdep.cpp.o
[623/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/symchoos.cpp.o
[624/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/xmenu.cpp.o
[625/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/strfun.cpp.o
[626/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/cvodestb.cpp.o
[627/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/cvtrset.cpp.o
[628/1557] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/corenrn_parameters.cpp.o
[629/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/nrndaspk.cpp.o
[630/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/tqueue.cpp.o
[631/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/cvodeobj.cpp.o
[632/1557] Linking CXX static library lib/libcoreneuron-core.a
[633/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrncvode/occvode.cpp.o
[634/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbs.cpp.o
[635/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbsdirect.cpp.o
[636/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbssrv.cpp.o
[637/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbslocal.cpp.o
[638/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbslsrv.cpp.o
[639/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbsrcli.cpp.o
[640/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/cachevec.cpp.o
[641/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/classreg.cpp.o
[642/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/bbslsrv2.cpp.o
[643/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/cxprop.cpp.o
[644/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/geometry3d.cpp.o
[645/1557] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/finithnd.cpp.o
[646/1557] Running nrnivmodl-core with internal mod files
WARNING: No mod files found in '/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/bin', compiling default ones only!
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal MOD2CPP_BINARY=/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/bin/mod2c_core MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
Translating arm64/corenrn/mod2c/hh.mod into arm64/corenrn/mod2c//hh.cpp
Translating arm64/corenrn/mod2c/expsyn.mod into arm64/corenrn/mod2c//expsyn.cpp
Translating arm64/corenrn/mod2c/netstim.mod into arm64/corenrn/mod2c//netstim.cpp
Translating arm64/corenrn/mod2c/exp2syn.mod into arm64/corenrn/mod2c//exp2syn.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/passive.mod into arm64/corenrn/mod2c//passive.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/stim.mod into arm64/corenrn/mod2c//stim.cpp
Translating arm64/corenrn/mod2c/pattern.mod into arm64/corenrn/mod2c//pattern.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating arm64/corenrn/mod2c/svclmp.mod into arm64/corenrn/mod2c//svclmp.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
arm64/corenrn/mod2c/expsyn.cpp:529:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:606:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:468:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:563:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:501:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:555:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:611:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:489:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
3 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/passive.cpp:342:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/stim.cpp:401:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/stim.cpp:328:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:502:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:607:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
1 warning generated.
2 warnings generated.
3 warnings generated.
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
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ld: warning: -undefined dynamic_lookup may not work with chained fixups
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[960/1557] Generating nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/unitstest.mod
[961/1557] Generating nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/gap.mod
[962/1557] Generating nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/version_macros.mod
[963/1557] Generating nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/ppxsrc.mod
[964/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/argpass.mod
[965/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cabpump.mod
[966/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cachan.mod
[967/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacum.mod
[968/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacur.mod
[969/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadif.mod
[970/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadifusl.mod
[971/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagk.mod
[972/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagkftab.mod
[973/1557] Linking CXX executable bin/nrniv
[974/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/capmp.mod
[975/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/expsynspine.mod
[976/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fh.mod
[977/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fit1.mod
[978/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/gap.mod
[979/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hh1.mod
[980/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hhvect.mod
[981/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/inatest.mod
[982/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod
[983/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod
[984/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod
[985/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod
[986/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod
[987/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod
[988/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod
[989/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod
[990/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod
[991/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc
[992/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod
[993/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod
[994/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod
[995/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod
[996/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod
[997/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod
[998/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod
[999/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod
[1000/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod
[1001/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod
[1002/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod
[1003/1557] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod
[1004/1557] Generating nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f/atest.mod
[1005/1557] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/oc/hoc_interpreter.cpp.o
[1006/1557] Generating nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/follower.mod
[1007/1557] Generating nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/gap.mod
[1008/1557] Generating nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/unitstest.mod
[1009/1557] Generating nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/version_macros.mod
[1010/1557] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:135: UserWarning: "/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:creating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:creating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:creating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:creating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:creating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:creating /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:building 'neuron.hoc' extension
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../
ld: warning: -undefined dynamic_lookup may not work with chained fixups
INFO:root:running build_scripts
INFO:root:creating build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755
[1011/1557] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod
[1012/1557] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod
[1013/1557] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod
[1014/1557] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod
[1015/1557] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod
[1016/1557] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod
[1017/1557] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod
[1018/1557] Building special[-core] for test group hoctests
/usr/bin/xcrun
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f
cfiles =
Mod files: "./atest.mod"

MODOBJS= ./atest.o
 -> NMODL .././atest.mod
 -> Compiling mod_func.cpp
Translating atest.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f/arm64/atest.cpp
Thread Safe
 -> Compiling atest.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1019/1557] Generating hoctests/test_loadbal_hoc/expect_err.hoc
[1020/1557] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc
[1021/1557] Generating hoctests/perf1_hoc/expect_err.hoc
[1022/1557] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc
[1023/1557] Generating hoctests/test1_hoc/expect_err.hoc
[1024/1557] Generating hoctests/test1_hoc/vardimtests/test1.hoc
[1025/1557] Generating hoctests/test2_hoc/expect_err.hoc
[1026/1557] Generating hoctests/test2_hoc/vardimtests/test2.hoc
[1027/1557] Generating hoctests/test3_hoc/expect_err.hoc
[1028/1557] Generating hoctests/test3_hoc/vardimtests/test3.hoc
[1029/1557] Generating hoctests/test4_hoc/expect_err.hoc
[1030/1557] Generating hoctests/test4_hoc/vardimtests/test4.hoc
[1031/1557] Generating hoctests/test5_hoc/expect_err.hoc
[1032/1557] Generating hoctests/test5_hoc/vardimtests/test5.hoc
[1033/1557] Generating hoctests/test6_hoc/expect_err.hoc
[1034/1557] Generating hoctests/test6_hoc/vardimtests/test6.hoc
[1035/1557] Generating hoctests/test7_hoc/expect_err.hoc
[1036/1557] Generating hoctests/test7_hoc/vardimtests/test7.hoc
[1037/1557] Building special[-core] for test group coverage_tests
/usr/bin/xcrun
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51
cfiles =
Mod files: "./ppxsrc.mod"

MODOBJS= ./ppxsrc.o
 -> Compiling mod_func.cpp
 -> NMODL .././ppxsrc.mod
Translating ppxsrc.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
Thread Safe
 -> Compiling ppxsrc.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1038/1557] Generating hoctests/test8_hoc/expect_err.hoc
[1039/1557] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json
[1040/1557] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py
[1041/1557] Generating hoctests/test8_hoc/vardimtests/test8.hoc
[1042/1557] Generating hoctests/test9_hoc/expect_err.hoc
[1043/1557] Generating hoctests/test_kschan_py/tests/test_kschan.py
[1044/1557] Generating hoctests/test9_hoc/vardimtests/test9.hoc
[1045/1557] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json
[1046/1557] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py
[1047/1557] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py
[1048/1557] Generating hoctests/test_shape_py/tests/test_shape.py
[1049/1557] Generating hoctests/test1_py/vardimtests/test1.py
[1050/1557] Generating hoctests/test2_py/vardimtests/test2.py
[1051/1557] Generating hoctests/test9_py/vardimtests/test9.py
[1052/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/axial.inc
[1053/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/axial.mod
[1054/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/axial_pp.mod
[1055/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/bacur.mod
[1056/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/banocur.mod
[1057/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/fornetcon.mod
[1058/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/invlfire.mod
[1059/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/natrans.mod
[1060/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/netmove.mod
[1061/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/sample.mod
[1062/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/unitstest.mod
[1063/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/version_macros.mod
[1064/1557] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/watchrange.mod
[1065/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod
[1066/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod
[1067/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
[1068/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
[1069/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod
[1070/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod
[1071/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
[1072/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod
[1073/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
[1074/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
[1075/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
[1076/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod
[1077/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
[1078/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod
[1079/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod
[1080/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod
[1081/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod
[1082/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod
[1083/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod
[1084/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod
[1085/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod
[1086/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
[1087/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod
[1088/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
[1089/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod
[1090/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod
[1091/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod
[1092/1557] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod
[1093/1557] Building special[-core] for test group parallel
/usr/bin/xcrun
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./unitstest.o ./version_macros.o
 -> Compiling mod_func.cpp
 -> NMODL .././follower.mod
 -> NMODL .././gap.mod
 -> NMODL .././unitstest.mod
Translating gap.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/arm64/gap.cpp
Thread Safe
Translating follower.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/arm64/follower.cpp
Thread Safe
Translating unitstest.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/arm64/unitstest.cpp
Thread Safe
 -> NMODL .././version_macros.mod
 -> Compiling follower.cpp
 -> Compiling gap.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/arm64/version_macros.cpp
Thread Safe
 -> Compiling unitstest.cpp
 -> Compiling version_macros.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1094/1557] Generating parallel/subworld/test/parallel_tests/test_subworld.py
[1095/1557] Generating parallel/partrans/test/pynrn/test_partrans.py
[1096/1557] Generating parallel/netpar/test/pynrn/test_hoc_po.py
[1097/1557] Generating parallel/netpar/test/pynrn/test_netpar.py
[1098/1557] Generating parallel/bas/test/parallel_tests/test_bas.py
[1099/1557] Generating parallel/nrntest_fast/test/pynrn/run_pytest.py
[1100/1557] Generating parallel/nrntest_fast/test/pynrn/test_nrntest_fast.json
[1101/1557] Generating parallel/nrntest_fast/test/pynrn/test_nrntest_fast.py
[1102/1557] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod
[1103/1557] Building special[-core] for test group nmodl_tests
/usr/bin/xcrun
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5
cfiles =
Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod"

MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o
 -> Compiling mod_func.cpp
 -> NMODL .././cadif.mod
 -> NMODL .././disc.mod
 -> NMODL .././fornetcon.mod
Translating cadif.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Thread Safe
 -> NMODL .././hhwatch.mod
Translating fornetcon.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
Thread Safe
 -> NMODL .././k3st.mod
Translating disc.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
Notice: DISCRETE is not thread safe.
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././table.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
Thread Safe
Translating k3st.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
NEURON's CVode method ignores conservation
Thread Safe
 -> NMODL .././variabletypes.mod
 -> Compiling cadif.cpp
Translating table.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
Thread Safe
 -> Compiling disc.cpp
Translating variabletypes.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
Thread Safe
 -> Compiling fornetcon.cpp
 -> Compiling hhwatch.cpp
 -> Compiling k3st.cpp
 -> Compiling table.cpp
 -> Compiling variabletypes.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1104/1557] Generating nmodl_tests/test_table/test/nmodl/test_table.py
[1105/1557] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py
[1106/1557] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py
[1107/1557] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py
[1108/1557] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py
[1109/1557] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py
[1110/1557] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py
[1111/1557] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py
[1112/1557] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
[1113/1557] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod
[1114/1557] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod
[1115/1557] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod
[1116/1557] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod
[1117/1557] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
[1118/1557] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib
/usr/bin/xcrun
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod"

MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./mcna.o ./nacaex.o ./nachan.o ./release.o
 -> NMODL ../cabpump.mod
 -> NMODL ../camchan.mod
 -> NMODL ../cachan1.mod
 -> Compiling mod_func.cpp
Translating cabpump.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Translating camchan.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
Thread Safe
 -> NMODL ../capump.mod
Translating cachan1.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Thread Safe
 -> NMODL ../invlfire.mod
 -> NMODL ../khhchan.mod
Translating capump.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
Thread Safe
Translating khhchan.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
Translating invlfire.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
Thread Safe
Thread Safe
 -> NMODL ../mcna.mod
 -> NMODL ../nachan.mod
 -> NMODL ../nacaex.mod
Translating mcna.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/mcna.cpp
Translating nachan.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
Translating nacaex.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
Thread Safe
Thread Safe
 -> NMODL ../release.mod
 -> Compiling cabpump.cpp
 -> Compiling cachan1.cpp
Translating release.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
Thread Safe
 -> Compiling camchan.cpp
 -> Compiling capump.cpp
 -> Compiling invlfire.cpp
 -> Compiling khhchan.cpp
 -> Compiling mcna.cpp
 -> Compiling nacaex.cpp
 -> Compiling nachan.cpp
 -> Compiling release.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1119/1557] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/benchmarks/threads/test_multicore.cpp.o
[1120/1557] Building special[-core] for test group pynrn
/usr/bin/xcrun
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./unitstest.o ./version_macros.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
Translating arm64/corenrn/mod2c/exp2syn.mod into arm64/corenrn/mod2c//exp2syn.cpp
Translating arm64/corenrn/mod2c/follower.mod into arm64/corenrn/mod2c//follower.cpp
Translating arm64/corenrn/mod2c/expsyn.mod into arm64/corenrn/mod2c//expsyn.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/gap.mod into arm64/corenrn/mod2c//gap.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/hh.mod into arm64/corenrn/mod2c//hh.cpp
Translating arm64/corenrn/mod2c/netstim.mod into arm64/corenrn/mod2c//netstim.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating arm64/corenrn/mod2c/passive.mod into arm64/corenrn/mod2c//passive.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/pattern.mod into arm64/corenrn/mod2c//pattern.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating arm64/corenrn/mod2c/stim.mod into arm64/corenrn/mod2c//stim.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/unitstest.mod into arm64/corenrn/mod2c//unitstest.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/version_macros.mod into arm64/corenrn/mod2c//version_macros.cpp
Translating arm64/corenrn/mod2c/svclmp.mod into arm64/corenrn/mod2c//svclmp.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
arm64/corenrn/mod2c/gap.cpp:387:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
1 warning generated.
arm64/corenrn/mod2c/expsyn.cpp:529:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:606:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:468:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:563:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:501:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/hh.cpp:555:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:611:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:489:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
arm64/corenrn/mod2c/passive.cpp:342:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
1 warning generated.
arm64/corenrn/mod2c/stim.cpp:401:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/stim.cpp:328:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
2 warnings generated.
arm64/corenrn/mod2c/svclmp.cpp:502:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:607:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/unitstest.cpp:480:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/unitstest.cpp:419:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
2 warnings generated.
3 warnings generated.
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././follower.mod
 -> NMODL .././gap.mod
 -> NMODL .././unitstest.mod
Translating unitstest.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/arm64/unitstest.cpp
Thread Safe
Translating follower.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/arm64/follower.cpp
Thread Safe
 -> NMODL .././version_macros.mod
 -> Compiling follower.cpp
Translating gap.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/arm64/gap.cpp
Thread Safe
 -> Compiling unitstest.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/arm64/version_macros.cpp
Thread Safe
 -> Compiling gap.cpp
 -> Compiling version_macros.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1121/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/run_pytest.py
[1122/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/gui_pycallobject.py
[1123/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_a_neuronoptions.py
[1124/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_basic.py
[1125/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_bbss.py
[1126/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_fast_imem.py
[1127/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_hoc_po.py
[1128/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_multigid.py
[1129/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_loadbal.py
[1130/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_netpar.py
[1131/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_nrnste.py
[1132/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_nlayer.py
[1133/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_nrntest_fast.py
[1134/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_nrntest_fast.json
[1135/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_partrans.py
[1136/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_pycallobject.py
[1137/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_py2nrnstring.py
[1138/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_pyobj.py
[1139/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_template_err.py
[1140/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_swc.py
[1141/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_units.py
[1142/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_version_macros.py
[1143/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_vector_api.py
[1144/1557] Generating pynrn/basic_tests_py3.10/test/pynrn/test_zptrlist.py
[1145/1557] Building special[-core] for test group external_ringtest
/usr/bin/xcrun
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff
cfiles =
Mod files: "./halfgap.mod"

MODOBJS= ./halfgap.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
Translating arm64/corenrn/mod2c/exp2syn.mod into arm64/corenrn/mod2c//exp2syn.cpp
Translating arm64/corenrn/mod2c/expsyn.mod into arm64/corenrn/mod2c//expsyn.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/halfgap.mod into arm64/corenrn/mod2c//halfgap.cpp
Translating arm64/corenrn/mod2c/hh.mod into arm64/corenrn/mod2c//hh.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
Translating arm64/corenrn/mod2c/netstim.mod into arm64/corenrn/mod2c//netstim.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating arm64/corenrn/mod2c/passive.mod into arm64/corenrn/mod2c//passive.cpp
Translating arm64/corenrn/mod2c/pattern.mod into arm64/corenrn/mod2c//pattern.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating arm64/corenrn/mod2c/stim.mod into arm64/corenrn/mod2c//stim.cpp
Translating arm64/corenrn/mod2c/svclmp.mod into arm64/corenrn/mod2c//svclmp.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
arm64/corenrn/mod2c/exp2syn.cpp:563:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:501:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:529:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/halfgap.cpp:387:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:606:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:468:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:555:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:611:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:489:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
1 warning generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/passive.cpp:342:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
1 warning generated.
arm64/corenrn/mod2c/stim.cpp:401:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/stim.cpp:328:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
2 warnings generated.
arm64/corenrn/mod2c/svclmp.cpp:502:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:607:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
Thread Safe
 -> Compiling halfgap.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1146/1557] Generating ../../external_ringtest/neuron/cell.hoc
[1147/1557] Generating ../../external_ringtest/neuron/args.py
[1148/1557] Generating ../../external_ringtest/neuron/celluniform.hoc
[1149/1557] Generating ../../external_ringtest/neuron/commonutils.py
[1150/1557] Generating ../../external_ringtest/neuron/ranparm.py
[1151/1557] Generating ../../external_ringtest/neuron/ringtest.py
[1152/1557] Generating ../../external_ringtest/neuron/ring.py
[1153/1557] Generating ../../external_ringtest/neuron/ringuniform.py
[1154/1557] Generating ../../external_ringtest/neuron/settings.py
[1155/1557] Generating ../../external_ringtest/neuron_mpi/args.py
[1156/1557] Generating ../../external_ringtest/neuron_mpi/cell.hoc
[1157/1557] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc
[1158/1557] Generating ../../external_ringtest/neuron_mpi/commonutils.py
[1159/1557] Generating ../../external_ringtest/neuron_mpi/ring.py
[1160/1557] Generating ../../external_ringtest/neuron_mpi/ranparm.py
[1161/1557] Generating ../../external_ringtest/neuron_mpi/ringtest.py
[1162/1557] Generating ../../external_ringtest/neuron_mpi/ringuniform.py
[1163/1557] Generating ../../external_ringtest/neuron_mpi/settings.py
[1164/1557] Generating ../../external_ringtest/neuron_mpi_python/args.py
[1165/1557] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc
[1166/1557] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py
[1167/1557] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc
[1168/1557] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py
[1169/1557] Generating ../../external_ringtest/neuron_mpi_python/ring.py
[1170/1557] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py
[1171/1557] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py
[1172/1557] Generating ../../external_ringtest/neuron_mpi_python/settings.py
[1173/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py
[1174/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc
[1175/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc
[1176/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py
[1177/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py
[1178/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py
[1179/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py
[1180/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py
[1181/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py
[1182/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc
[1183/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py
[1184/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc
[1185/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py
[1186/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py
[1187/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py
[1188/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py
[1189/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py
[1190/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc
[1191/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py
[1192/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py
[1193/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc
[1194/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py
[1195/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py
[1196/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py
[1197/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py
[1198/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py
[1199/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py
[1200/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc
[1201/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py
[1202/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc
[1203/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py
[1204/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py
[1205/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py
[1206/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py
[1207/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py
[1208/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py
[1209/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py
[1210/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc
[1211/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc
[1212/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py
[1213/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py
[1214/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py
[1215/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py
[1216/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py
[1217/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py
[1218/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc
[1219/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py
[1220/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py
[1221/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py
[1222/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc
[1223/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py
[1224/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py
[1225/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py
[1226/1557] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py
[1227/1557] Building special[-core] for test group example_nmodl
/usr/bin/xcrun
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2
cfiles =
Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod"

MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o
 -> Compiling mod_func.cpp
 -> NMODL .././argpass.mod
 -> NMODL .././cabpump.mod
 -> NMODL .././cachan.mod
Translating cachan.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
Translating argpass.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
Notice: VERBATIM blocks are not thread safe
Thread Safe
Translating cabpump.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL .././cacum.mod
 -> NMODL .././cacur.mod
 -> NMODL .././cadif.mod
Translating cacur.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
Thread Safe
Translating cacum.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
Translating cadif.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
Thread Safe
Thread Safe
 -> NMODL .././cadifusl.mod
 -> NMODL .././cagk.mod
 -> NMODL .././cagkftab.mod
Translating cadifusl.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Translating cagkftab.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
Translating cagk.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
Thread Safe
Thread Safe
 -> NMODL .././capmp.mod
 -> NMODL .././expsynspine.mod
 -> NMODL .././fh.mod
Translating capmp.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
NEURON's CVode method ignores conservation
Thread Safe
Translating expsynspine.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
Notice: LINEAR is not thread safe.
Translating fh.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
INCLUDEing standard.inc
Notice: Assignment to the GLOBAL variable, "inf", is not thread safe
Notice: Assignment to the GLOBAL variable, "tau", is not thread safe
 -> NMODL .././fit1.mod
 -> NMODL .././gap.mod
 -> NMODL .././hh1.mod
Translating fit1.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
Notice: VERBATIM blocks are not thread safe
Translating gap.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
Notice: Use of POINTER is not thread safe.
 -> NMODL .././inatest.mod
 -> NMODL .././hhvect.mod
Translating hh1.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp
Notice: This mechanism cannot be used with CVODE
Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe
Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "minf", is not thread safe
Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
 -> NMODL .././ionleak.mod
Translating hhvect.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
Translating inatest.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp
Thread Safe
 -> NMODL .././nacum.mod
 -> NMODL .././nacur.mod
Translating ionleak.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp
Thread Safe
 -> NMODL .././nadifl.mod
Translating nacum.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp
Thread Safe
Translating nacur.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp
Thread Safe
 -> NMODL .././nonlin.mod
 -> NMODL .././obj_ex.mod
Translating nadifl.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp
Thread Safe
 -> NMODL .././order.mod
Translating obj_ex.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp
Thread Safe
 -> NMODL .././passiv.mod
Translating nonlin.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp
Notice: NONLINEAR is not thread safe.
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> NMODL .././rchan.mod
Translating order.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp
Thread Safe
Translating passiv.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp
Thread Safe
 -> NMODL .././stim1.mod
 -> NMODL .././str.mod
Translating rchan.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp
Notice: normrand is not thread safe
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././syn1.mod
Translating stim1.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp
Thread Safe
Translating str.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././synpre.mod
 -> NMODL .././trivial.mod
Translating syn1.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp
Thread Safe
 -> NMODL .././tstdarray.mod
Translating synpre.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp
Translating trivial.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././tstextrn.mod
 -> NMODL .././tstpnt1.mod
Translating tstdarray.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp
Thread Safe
 -> NMODL .././tstpnt2.mod
Translating tstpnt1.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp
Notice: Use of POINTER is not thread safe.
 -> NMODL .././tstvec.mod
Translating tstextrn.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp
Notice: Use of EXTERNAL is not thread safe.
 -> NMODL .././vclmp1.mod
 -> NMODL .././vlag.mod
Translating tstvec.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp
Notice: VERBATIM blocks are not thread safe
Translating vclmp1.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
Notice: LINEAR is not thread safe.
Translating tstpnt2.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp
Translating vlag.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp
Thread Safe
 -> Compiling argpass.cpp
 -> Compiling cabpump.cpp
 -> Compiling cachan.cpp
Notice: Use of POINTER is not thread safe.
 -> Compiling cacum.cpp
 -> Compiling cacur.cpp
 -> Compiling cadif.cpp
 -> Compiling cadifusl.cpp
 -> Compiling cagk.cpp
 -> Compiling cagkftab.cpp
 -> Compiling capmp.cpp
 -> Compiling expsynspine.cpp
 -> Compiling fh.cpp
 -> Compiling fit1.cpp
 -> Compiling gap.cpp
 -> Compiling hh1.cpp
 -> Compiling hhvect.cpp
 -> Compiling inatest.cpp
 -> Compiling ionleak.cpp
 -> Compiling nacum.cpp
 -> Compiling nacur.cpp
 -> Compiling nadifl.cpp
 -> Compiling nonlin.cpp
 -> Compiling obj_ex.cpp
 -> Compiling order.cpp
 -> Compiling passiv.cpp
 -> Compiling rchan.cpp
 -> Compiling stim1.cpp
 -> Compiling str.cpp
 -> Compiling syn1.cpp
 -> Compiling synpre.cpp
 -> Compiling trivial.cpp
 -> Compiling tstdarray.cpp
 -> Compiling tstextrn.cpp
 -> Compiling tstpnt1.cpp
 -> Compiling tstpnt2.cpp
 -> Compiling tstvec.cpp
 -> Compiling vclmp1.cpp
 -> Compiling vlag.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1228/1557] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc
[1229/1557] Generating example_nmodl/cachan_hoc/cachan.hoc
[1230/1557] Generating example_nmodl/cabpump_hoc/cabpump.hoc
[1231/1557] Generating example_nmodl/cadif_hoc/cadif.hoc
[1232/1557] Generating example_nmodl/cadif_hoc/cadif.ses
[1233/1557] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc
[1234/1557] Generating example_nmodl/cagk_hoc/cagk.hoc
[1235/1557] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc
[1236/1557] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc
[1237/1557] Generating example_nmodl/capmp_hoc/capmp.hoc
[1238/1557] Generating example_nmodl/cv_hoc/cv.hoc
[1239/1557] Generating example_nmodl/gap_hoc/gap.hoc
[1240/1557] Generating example_nmodl/fh_hoc/fh.hoc
[1241/1557] Generating example_nmodl/hhvect_hoc/hhvect.hoc
[1242/1557] Generating example_nmodl/fit1_hoc/fit1.hoc
[1243/1557] Generating example_nmodl/hh1_hoc/hh1.hoc
[1244/1557] Generating example_nmodl/nacum_hoc/nacum.hoc
[1245/1557] Generating example_nmodl/nadifl1_hoc/nadifl1.ses
[1246/1557] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc
[1247/1557] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc
[1248/1557] Generating example_nmodl/nadifl2_hoc/nadifl2.ses
[1249/1557] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc
[1250/1557] Generating example_nmodl/nadifl3_hoc/nadifl3.ses
[1251/1557] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc
[1252/1557] Generating example_nmodl/nadifl4_hoc/nadifl4.ses
[1253/1557] Generating example_nmodl/order_hoc/order.hoc
[1254/1557] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc
[1255/1557] Generating example_nmodl/passiv_hoc/passiv.hoc
[1256/1557] Generating example_nmodl/stim1_hoc/stim1.hoc
[1257/1557] Generating example_nmodl/syn1_hoc/syn1.hoc
[1258/1557] Generating example_nmodl/synpre_hoc/synpre.hoc
[1259/1557] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc
[1260/1557] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc
[1261/1557] Generating example_nmodl/cagkftab_py/cagkftab.py
[1262/1557] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc
[1263/1557] Generating example_nmodl/tstvec_hoc/tstvec.hoc
[1264/1557] Generating example_nmodl/expsynspine_py/expsynspine.py
[1265/1557] Generating example_nmodl/expsynspine_py/expsynspine.ses
[1266/1557] Generating example_nmodl/nonlin_py/nonlin.py
[1267/1557] Generating example_nmodl/tstpnt1_py/tstpnt1.py
[1268/1557] Generating example_nmodl/tstpnt2_py/tstpnt2.py
[1269/1557] Generating example_nmodl/vlag_py/vlag.py
[1270/1557] Building special[-core] for test group coreneuron_modtests
/usr/bin/xcrun
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056
cfiles =
Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod"

MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./invlfire.o ./natrans.o ./netmove.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
Translating arm64/corenrn/mod2c/axial.mod into arm64/corenrn/mod2c//axial.cpp
INCLUDEing arm64/corenrn/mod2c/axial.inc
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/axial_pp.mod into arm64/corenrn/mod2c//axial_pp.cpp
INCLUDEing arm64/corenrn/mod2c/axial.inc
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/bacur.mod into arm64/corenrn/mod2c//bacur.cpp
Warning: v undefined. (declared within VERBATIM?)
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/exp2syn.mod into arm64/corenrn/mod2c//exp2syn.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/banocur.mod into arm64/corenrn/mod2c//banocur.cpp
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
Notice: This mechanism cannot be used with CVODE
Thread Safe
cvode_emit=0 cvode_not_allowed=1
Translating arm64/corenrn/mod2c/expsyn.mod into arm64/corenrn/mod2c//expsyn.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/hh.mod into arm64/corenrn/mod2c//hh.cpp
Translating arm64/corenrn/mod2c/natrans.mod into arm64/corenrn/mod2c//natrans.cpp
Translating arm64/corenrn/mod2c/invlfire.mod into arm64/corenrn/mod2c//invlfire.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/fornetcon.mod into arm64/corenrn/mod2c//fornetcon.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/netstim.mod into arm64/corenrn/mod2c//netstim.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating arm64/corenrn/mod2c/passive.mod into arm64/corenrn/mod2c//passive.cpp
Translating arm64/corenrn/mod2c/netmove.mod into arm64/corenrn/mod2c//netmove.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/sample.mod into arm64/corenrn/mod2c//sample.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/pattern.mod into arm64/corenrn/mod2c//pattern.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating arm64/corenrn/mod2c/svclmp.mod into arm64/corenrn/mod2c//svclmp.cpp
Translating arm64/corenrn/mod2c/unitstest.mod into arm64/corenrn/mod2c//unitstest.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/watchrange.mod into arm64/corenrn/mod2c//watchrange.cpp
Translating arm64/corenrn/mod2c/stim.mod into arm64/corenrn/mod2c//stim.cpp
Translating arm64/corenrn/mod2c/version_macros.mod into arm64/corenrn/mod2c//version_macros.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
arm64/corenrn/mod2c/bacur.cpp:627:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/bacur.cpp:673:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/bacur.cpp:565:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/bacur.cpp:363:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
arm64/corenrn/mod2c/bacur.cpp:395:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
arm64/corenrn/mod2c/bacur.cpp:426:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
arm64/corenrn/mod2c/bacur.cpp:485:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
arm64/corenrn/mod2c/bacur.cpp:516:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
arm64/corenrn/mod2c/banocur.cpp:641:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/banocur.cpp:548:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/banocur.cpp:351:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
arm64/corenrn/mod2c/banocur.cpp:383:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
arm64/corenrn/mod2c/banocur.cpp:414:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
arm64/corenrn/mod2c/banocur.cpp:467:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
arm64/corenrn/mod2c/banocur.cpp:498:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
7 warnings generated.
8 warnings generated.
arm64/corenrn/mod2c/exp2syn.cpp:563:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:501:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:529:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:606:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:468:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:555:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:611:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:489:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/fornetcon.cpp:552:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
3 warnings generated.
3 warnings generated.
1 warning generated.
arm64/corenrn/mod2c/netmove.cpp:673:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/netmove.cpp:577:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
2 warnings generated.
arm64/corenrn/mod2c/passive.cpp:342:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
1 warning generated.
arm64/corenrn/mod2c/stim.cpp:401:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/stim.cpp:328:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
2 warnings generated.
arm64/corenrn/mod2c/svclmp.cpp:502:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:607:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
arm64/corenrn/mod2c/unitstest.cpp:480:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/unitstest.cpp:419:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
2 warnings generated.
arm64/corenrn/mod2c/watchrange.cpp:835:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/watchrange.cpp:651:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
2 warnings generated.
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././axial.mod
 -> NMODL .././axial_pp.mod
 -> NMODL .././bacur.mod
Translating axial_pp.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/axial_pp.cpp
Translating axial.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/axial.cpp
Translating bacur.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/bacur.cpp
INCLUDEing axial.inc
INCLUDEing axial.inc
Thread Safe
Thread Safe
Thread Safe
 -> NMODL .././banocur.mod
 -> NMODL .././fornetcon.mod
 -> NMODL .././invlfire.mod
Translating banocur.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/banocur.cpp
Translating fornetcon.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/fornetcon.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Thread Safe
Translating invlfire.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/invlfire.cpp
Thread Safe
 -> NMODL .././natrans.mod
 -> NMODL .././netmove.mod
 -> NMODL .././sample.mod
Translating natrans.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/natrans.cpp
Thread Safe
Translating netmove.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/netmove.cpp
Thread Safe
Translating sample.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/sample.cpp
Thread Safe
 -> NMODL .././unitstest.mod
 -> NMODL .././version_macros.mod
 -> NMODL .././watchrange.mod
Translating unitstest.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/unitstest.cpp
Thread Safe
Translating version_macros.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/version_macros.cpp
Thread Safe
 -> Compiling axial.cpp
Translating watchrange.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/watchrange.cpp
Thread Safe
 -> Compiling axial_pp.cpp
 -> Compiling bacur.cpp
 -> Compiling banocur.cpp
 -> Compiling fornetcon.cpp
 -> Compiling invlfire.cpp
 -> Compiling natrans.cpp
 -> Compiling netmove.cpp
 -> Compiling sample.cpp
 -> Compiling unitstest.cpp
 -> Compiling version_macros.cpp
 -> Compiling watchrange.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1271/1557] Generating coreneuron_modtests/version_macros/test/pynrn/test_version_macros.py
[1272/1557] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py
[1273/1557] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py
[1274/1557] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc
[1275/1557] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py
[1276/1557] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1277/1557] Generating coreneuron_modtests/fast_imem_py_cpu/test/pynrn/test_fast_imem.py
[1278/1557] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py
[1279/1557] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py
[1280/1557] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py
[1281/1557] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py
[1282/1557] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py
[1283/1557] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py
[1284/1557] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1285/1557] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py
[1286/1557] Generating coreneuron_modtests/inputpresyn_py_cpu/test/coreneuron/test_spikes.py
[1287/1557] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py
[1288/1557] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py
[1289/1557] Building special[-core] for test group testcorenrn_bbcore
/usr/bin/xcrun
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876
cfiles =
Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod"

MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
Translating arm64/corenrn/mod2c/Gfluct3.mod into arm64/corenrn/mod2c//Gfluct3.cpp
Translating arm64/corenrn/mod2c/exp2syn.mod into arm64/corenrn/mod2c//exp2syn.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/expsyn.mod into arm64/corenrn/mod2c//expsyn.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
Translating arm64/corenrn/mod2c/hh.mod into arm64/corenrn/mod2c//hh.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/hhderiv.mod into arm64/corenrn/mod2c//hhderiv.cpp
Translating arm64/corenrn/mod2c/hhkin.mod into arm64/corenrn/mod2c//hhkin.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/nacum.mod into arm64/corenrn/mod2c//nacum.cpp
Translating arm64/corenrn/mod2c/hhwatch.mod into arm64/corenrn/mod2c//hhwatch.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/netstim.mod into arm64/corenrn/mod2c//netstim.cpp
Translating arm64/corenrn/mod2c/passive.mod into arm64/corenrn/mod2c//passive.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating arm64/corenrn/mod2c/stim.mod into arm64/corenrn/mod2c//stim.cpp
Translating arm64/corenrn/mod2c/pattern.mod into arm64/corenrn/mod2c//pattern.cpp
Translating arm64/corenrn/mod2c/svclmp.mod into arm64/corenrn/mod2c//svclmp.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/vecevent.mod into arm64/corenrn/mod2c//vecevent.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
arm64/corenrn/mod2c/hh.cpp:555:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:611:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:489:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:563:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:501:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:529:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:606:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:468:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Gfluct3.cpp:994:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Gfluct3.cpp:922:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Gfluct3.cpp:490:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/hhwatch.cpp:763:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hhwatch.cpp:683:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hhwatch.cpp:547:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  for (_iml = 0; _iml < _cntml_actual; ++_iml) {
  ^
arm64/corenrn/mod2c/hhderiv.cpp:661:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hhderiv.cpp:717:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hhderiv.cpp:591:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hhkin.cpp:730:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hhkin.cpp:786:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hhkin.cpp:664:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/nacum.cpp:470:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/nacum.cpp:365:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
2 warnings generated.
3 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/passive.cpp:342:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
1 warning generated.
arm64/corenrn/mod2c/stim.cpp:401:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/stim.cpp:328:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
2 warnings generated.
arm64/corenrn/mod2c/svclmp.cpp:502:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:607:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././Gfluct3.mod
 -> NMODL .././hhderiv.mod
 -> NMODL .././hhkin.mod
Translating Gfluct3.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
Translating hhderiv.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
Translating hhkin.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
Thread Safe
Thread Safe
Thread Safe
 -> NMODL .././nacum.mod
 -> NMODL .././hhwatch.mod
 -> NMODL .././vecevent.mod
Translating nacum.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
Translating vecevent.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
Translating hhwatch.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
Thread Safe
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Thread Safe
 -> Compiling Gfluct3.cpp
 -> Compiling hhderiv.cpp
 -> Compiling hhkin.cpp
 -> Compiling hhwatch.cpp
 -> Compiling nacum.cpp
 -> Compiling vecevent.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1290/1557] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc
[1291/1557] Generating ../../testcorenrn_bbcore/neuron/common.hoc
[1292/1557] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc
[1293/1557] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc
[1294/1557] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc
[1295/1557] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc
[1296/1557] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc
[1297/1557] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc
[1298/1557] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1299/1557] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc
[1300/1557] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc
[1301/1557] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc
[1302/1557] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc
[1303/1557] Generating ../../testcorenrn_conc/neuron/common.hoc
[1304/1557] Generating ../../testcorenrn_conc/neuron/defvar.hoc
[1305/1557] Generating ../../testcorenrn_conc/neuron/testconc.hoc
[1306/1557] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc
[1307/1557] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc
[1308/1557] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc
[1309/1557] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc
[1310/1557] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1311/1557] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc
[1312/1557] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc
[1313/1557] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc
[1314/1557] Generating ../../testcorenrn_deriv/neuron/common.hoc
[1315/1557] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc
[1316/1557] Generating ../../testcorenrn_deriv/neuron/defvar.hoc
[1317/1557] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc
[1318/1557] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc
[1319/1557] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc
[1320/1557] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc
[1321/1557] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1322/1557] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc
[1323/1557] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc
[1324/1557] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc
[1325/1557] Generating ../../testcorenrn_gf/neuron/common.hoc
[1326/1557] Generating ../../testcorenrn_gf/neuron/defvar.hoc
[1327/1557] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc
[1328/1557] Generating ../../testcorenrn_gf/neuron/testgf.hoc
[1329/1557] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc
[1330/1557] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc
[1331/1557] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1332/1557] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc
[1333/1557] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc
[1334/1557] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc
[1335/1557] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc
[1336/1557] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc
[1337/1557] Generating ../../testcorenrn_kin/neuron/common.hoc
[1338/1557] Generating ../../testcorenrn_kin/neuron/defvar.hoc
[1339/1557] Generating ../../testcorenrn_kin/neuron/testkin.hoc
[1340/1557] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc
[1341/1557] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc
[1342/1557] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc
[1343/1557] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc
[1344/1557] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1345/1557] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc
[1346/1557] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc
[1347/1557] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc
[1348/1557] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc
[1349/1557] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc
[1350/1557] Generating ../../testcorenrn_patstim/neuron/defvar.hoc
[1351/1557] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc
[1352/1557] Generating ../../testcorenrn_patstim/neuron/common.hoc
[1353/1557] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc
[1354/1557] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc
[1355/1557] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc
[1356/1557] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc
[1357/1557] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc
[1358/1557] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc
[1359/1557] Generating ../../testcorenrn_vecplay/neuron/common.hoc
[1360/1557] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc
[1361/1557] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc
[1362/1557] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc
[1363/1557] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc
[1364/1557] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc
[1365/1557] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc
[1366/1557] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc
[1367/1557] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc
[1368/1557] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1369/1557] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc
[1370/1557] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc
[1371/1557] Generating ../../testcorenrn_vecevent/neuron/common.hoc
[1372/1557] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc
[1373/1557] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc
[1374/1557] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc
[1375/1557] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc
[1376/1557] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc
[1377/1557] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc
[1378/1557] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1379/1557] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc
[1380/1557] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc
[1381/1557] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc
[1382/1557] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc
[1383/1557] Generating ../../testcorenrn_watch/neuron/common.hoc
[1384/1557] Generating ../../testcorenrn_watch/neuron/testwatch.hoc
[1385/1557] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc
[1386/1557] Generating ../../testcorenrn_watch/neuron/defvar.hoc
[1387/1557] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc
[1388/1557] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc
[1389/1557] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc
[1390/1557] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1391/1557] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc
[1392/1557] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc
[1393/1557] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc
[1394/1557] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc
[1395/1557] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc
[1396/1557] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc
[1397/1557] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc
[1398/1557] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc
[1399/1557] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc
[1400/1557] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc
[1401/1557] Building special[-core] for test group reduced_dentate
/usr/bin/xcrun
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead
cfiles =
Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod"

MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
Translating arm64/corenrn/mod2c/Aradi_Ca.mod into arm64/corenrn/mod2c//Aradi_Ca.cpp
Translating arm64/corenrn/mod2c/Aradi_CadepK.mod into arm64/corenrn/mod2c//Aradi_CadepK.cpp
Translating arm64/corenrn/mod2c/Aradi_KA.mod into arm64/corenrn/mod2c//Aradi_KA.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/Aradi_KDRf.mod into arm64/corenrn/mod2c//Aradi_KDRf.cpp
Translating arm64/corenrn/mod2c/Aradi_KDRs.mod into arm64/corenrn/mod2c//Aradi_KDRs.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/Aradi_Na.mod into arm64/corenrn/mod2c//Aradi_Na.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/CaBK.mod into arm64/corenrn/mod2c//CaBK.cpp
Translating arm64/corenrn/mod2c/DGC_M.mod into arm64/corenrn/mod2c//DGC_M.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/DGC_UK.mod into arm64/corenrn/mod2c//DGC_UK.cpp
Translating arm64/corenrn/mod2c/DGC_sAHP.mod into arm64/corenrn/mod2c//DGC_sAHP.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/LcaMig.mod into arm64/corenrn/mod2c//LcaMig.cpp
Translating arm64/corenrn/mod2c/SH_KIn.mod into arm64/corenrn/mod2c//SH_KIn.cpp
Translating arm64/corenrn/mod2c/Gfluct3.mod into arm64/corenrn/mod2c//Gfluct3.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/SH_na8st.mod into arm64/corenrn/mod2c//SH_na8st.cpp
NEURON's CVode method ignores conservation
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/bgka.mod into arm64/corenrn/mod2c//bgka.cpp
Translating arm64/corenrn/mod2c/ccanl.mod into arm64/corenrn/mod2c//ccanl.cpp
Translating arm64/corenrn/mod2c/exp2syn.mod into arm64/corenrn/mod2c//exp2syn.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/expsyn.mod into arm64/corenrn/mod2c//expsyn.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/ggap.mod into arm64/corenrn/mod2c//ggap.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/gskch.mod into arm64/corenrn/mod2c//gskch.cpp
Translating arm64/corenrn/mod2c/hh.mod into arm64/corenrn/mod2c//hh.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/holdingi.mod into arm64/corenrn/mod2c//holdingi.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/hyperde3.mod into arm64/corenrn/mod2c//hyperde3.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/ichan2.mod into arm64/corenrn/mod2c//ichan2.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/iconc_Ca.mod into arm64/corenrn/mod2c//iconc_Ca.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/kcaPR.mod into arm64/corenrn/mod2c//kcaPR.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/na3n.mod into arm64/corenrn/mod2c//na3n.cpp
Translating arm64/corenrn/mod2c/nca.mod into arm64/corenrn/mod2c//nca.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/netstim.mod into arm64/corenrn/mod2c//netstim.cpp
Translating arm64/corenrn/mod2c/passive.mod into arm64/corenrn/mod2c//passive.cpp
Thread Safe
Thread Safe
cvode_emit=0 cvode_not_allowed=0
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating arm64/corenrn/mod2c/spines.mod into arm64/corenrn/mod2c//spines.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/pattern.mod into arm64/corenrn/mod2c//pattern.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating arm64/corenrn/mod2c/stim.mod into arm64/corenrn/mod2c//stim.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/svclmp.mod into arm64/corenrn/mod2c//svclmp.cpp
Translating arm64/corenrn/mod2c/tca.mod into arm64/corenrn/mod2c//tca.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Translating arm64/corenrn/mod2c/vecevent.mod into arm64/corenrn/mod2c//vecevent.cpp
Thread Safe
cvode_emit=0 cvode_not_allowed=0
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
arm64/corenrn/mod2c/Aradi_KA.cpp:494:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_KA.cpp:544:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_KA.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_KDRf.cpp:482:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_KDRf.cpp:532:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_KDRf.cpp:422:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_CadepK.cpp:763:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_CadepK.cpp:815:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_CadepK.cpp:694:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_Ca.cpp:1006:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_Ca.cpp:1056:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_Ca.cpp:939:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/Aradi_Na.cpp:469:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_Na.cpp:520:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_Na.cpp:408:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_KDRs.cpp:471:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_KDRs.cpp:521:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Aradi_KDRs.cpp:411:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/CaBK.cpp:627:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/CaBK.cpp:681:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/CaBK.cpp:564:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/DGC_M.cpp:633:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/DGC_M.cpp:683:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/DGC_M.cpp:573:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/DGC_UK.cpp:580:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/DGC_UK.cpp:627:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/DGC_UK.cpp:516:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/DGC_sAHP.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/DGC_sAHP.cpp:692:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/DGC_sAHP.cpp:574:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
arm64/corenrn/mod2c/Gfluct3.cpp:995:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/Gfluct3.cpp:914:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/LcaMig.cpp:670:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/LcaMig.cpp:723:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/LcaMig.cpp:608:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
3 warnings generated.
2 warnings generated.
arm64/corenrn/mod2c/SH_KIn.cpp:527:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/SH_KIn.cpp:578:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/SH_KIn.cpp:467:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/SH_na8st.cpp:993:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/SH_na8st.cpp:1044:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/SH_na8st.cpp:933:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
arm64/corenrn/mod2c/bgka.cpp:633:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/bgka.cpp:684:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/bgka.cpp:573:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
arm64/corenrn/mod2c/ccanl.cpp:665:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/ccanl.cpp:535:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
2 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/exp2syn.cpp:563:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/exp2syn.cpp:501:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:529:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:606:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/expsyn.cpp:468:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/ggap.cpp:382:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/ggap.cpp:322:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
2 warnings generated.
arm64/corenrn/mod2c/gskch.cpp:473:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/gskch.cpp:527:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/gskch.cpp:410:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
arm64/corenrn/mod2c/hh.cpp:555:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:611:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hh.cpp:489:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
arm64/corenrn/mod2c/holdingi.cpp:387:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/holdingi.cpp:319:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
2 warnings generated.
arm64/corenrn/mod2c/hyperde3.cpp:675:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hyperde3.cpp:741:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/hyperde3.cpp:603:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
arm64/corenrn/mod2c/ichan2.cpp:673:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/ichan2.cpp:734:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/ichan2.cpp:603:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
arm64/corenrn/mod2c/iconc_Ca.cpp:572:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/iconc_Ca.cpp:464:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/kcaPR.cpp:556:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/kcaPR.cpp:608:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/kcaPR.cpp:491:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
2 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/na3n.cpp:766:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/na3n.cpp:817:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/na3n.cpp:706:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/nca.cpp:558:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/nca.cpp:609:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/nca.cpp:498:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/passive.cpp:342:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
1 warning generated.
arm64/corenrn/mod2c/stim.cpp:401:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/stim.cpp:328:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:502:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:607:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/svclmp.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
2 warnings generated.
3 warnings generated.
arm64/corenrn/mod2c/tca.cpp:674:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/tca.cpp:727:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
arm64/corenrn/mod2c/tca.cpp:612:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
for (_iml = 0; _iml < _cntml_actual; ++_iml) {
^
3 warnings generated.
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> NMODL .././Aradi_Ca.mod
 -> NMODL .././Aradi_CadepK.mod
 -> Compiling mod_func.cpp
 -> NMODL .././Aradi_KA.mod
Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp
Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp
Thread Safe
Translating Aradi_KA.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp
Thread Safe
Thread Safe
 -> NMODL .././Aradi_KDRf.mod
 -> NMODL .././Aradi_KDRs.mod
 -> NMODL .././Aradi_Na.mod
Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp
Thread Safe
Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp
Thread Safe
Translating Aradi_Na.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp
 -> NMODL .././CaBK.mod
Thread Safe
 -> NMODL .././DGC_M.mod
 -> NMODL .././DGC_UK.mod
Translating DGC_M.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp
Translating CaBK.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp
Thread Safe
Thread Safe
Translating DGC_UK.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp
 -> NMODL .././DGC_sAHP.mod
Thread Safe
 -> NMODL .././Gfluct3.mod
 -> NMODL .././LcaMig.mod
 -> NMODL .././SH_KIn.mod
Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp
Translating Gfluct3.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp
Thread Safe
Thread Safe
Translating LcaMig.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp
Thread Safe
 -> NMODL .././bgka.mod
 -> NMODL .././SH_na8st.mod
Translating SH_KIn.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp
Thread Safe
 -> NMODL .././ccanl.mod
 -> NMODL .././ggap.mod
Translating bgka.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp
Translating SH_na8st.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp
Thread Safe
NEURON's CVode method ignores conservation
Thread Safe
 -> NMODL .././gskch.mod
 -> NMODL .././holdingi.mod
Translating ccanl.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp
Thread Safe
Translating ggap.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp
Thread Safe
 -> NMODL .././hyperde3.mod
 -> NMODL .././ichan2.mod
Translating holdingi.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp
Thread Safe
Translating gskch.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp
Thread Safe
 -> NMODL .././iconc_Ca.mod
Translating hyperde3.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp
Thread Safe
 -> NMODL .././kcaPR.mod
Translating ichan2.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp
Thread Safe
 -> NMODL .././na3n.mod
 -> NMODL .././nca.mod
Translating iconc_Ca.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp
Thread Safe
Translating kcaPR.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp
 -> NMODL .././spines.mod
Thread Safe
Translating na3n.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp
Thread Safe
Translating nca.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp
Thread Safe
 -> NMODL .././tca.mod
 -> NMODL .././vecevent.mod
 -> Compiling Aradi_Ca.cpp
Translating spines.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp
Thread Safe
Translating tca.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp
Thread Safe
Translating vecevent.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling Aradi_CadepK.cpp
 -> Compiling Aradi_KA.cpp
 -> Compiling Aradi_KDRf.cpp
 -> Compiling Aradi_KDRs.cpp
 -> Compiling Aradi_Na.cpp
 -> Compiling CaBK.cpp
 -> Compiling DGC_M.cpp
 -> Compiling DGC_UK.cpp
 -> Compiling DGC_sAHP.cpp
 -> Compiling Gfluct3.cpp
 -> Compiling LcaMig.cpp
 -> Compiling SH_KIn.cpp
 -> Compiling SH_na8st.cpp
 -> Compiling bgka.cpp
 -> Compiling ccanl.cpp
 -> Compiling ggap.cpp
 -> Compiling gskch.cpp
 -> Compiling holdingi.cpp
 -> Compiling hyperde3.cpp
 -> Compiling ichan2.cpp
 -> Compiling iconc_Ca.cpp
 -> Compiling kcaPR.cpp
 -> Compiling na3n.cpp
 -> Compiling nca.cpp
 -> Compiling spines.cpp
 -> Compiling tca.cpp
 -> Compiling vecevent.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1402/1557] Generating ../../reduced_dentate/neuron/commonutils.py
[1403/1557] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat
[1404/1557] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat
[1405/1557] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat
[1406/1557] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat
[1407/1557] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat
[1408/1557] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat
[1409/1557] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat
[1410/1557] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat
[1411/1557] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat
[1412/1557] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat
[1413/1557] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat
[1414/1557] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat
[1415/1557] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat
[1416/1557] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat
[1417/1557] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat
[1418/1557] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat
[1419/1557] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat
[1420/1557] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat
[1421/1557] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat
[1422/1557] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat
[1423/1557] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat
[1424/1557] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat
[1425/1557] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat
[1426/1557] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat
[1427/1557] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat
[1428/1557] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat
[1429/1557] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat
[1430/1557] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat
[1431/1557] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat
[1432/1557] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat
[1433/1557] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat
[1434/1557] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat
[1435/1557] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat
[1436/1557] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat
[1437/1557] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat
[1438/1557] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat
[1439/1557] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat
[1440/1557] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat
[1441/1557] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat
[1442/1557] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat
[1443/1557] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat
[1444/1557] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat
[1445/1557] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat
[1446/1557] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat
[1447/1557] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat
[1448/1557] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat
[1449/1557] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat
[1450/1557] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat
[1451/1557] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat
[1452/1557] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat
[1453/1557] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat
[1454/1557] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat
[1455/1557] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat
[1456/1557] Generating ../../reduced_dentate/neuron/lib.hoc
[1457/1557] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat
[1458/1557] Generating ../../reduced_dentate/neuron/main.hoc
[1459/1557] Generating ../../reduced_dentate/neuron/parameters/Control.hoc
[1460/1557] Generating ../../reduced_dentate/neuron/run.hoc
[1461/1557] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc
[1462/1557] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc
[1463/1557] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc
[1464/1557] Generating ../../reduced_dentate/neuron/templates/DGC.hoc
[1465/1557] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc
[1466/1557] Generating ../../reduced_dentate/neuron/templates/Dict.hoc
[1467/1557] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc
[1468/1557] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc
[1469/1557] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc
[1470/1557] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc
[1471/1557] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc
[1472/1557] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc
[1473/1557] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc
[1474/1557] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc
[1475/1557] Generating ../../reduced_dentate/neuron/templates/Value.hoc
[1476/1557] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc
[1477/1557] Generating ../../reduced_dentate/neuron/templates/defvar.hoc
[1478/1557] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py
[1479/1557] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat
[1480/1557] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat
[1481/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat
[1482/1557] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat
[1483/1557] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat
[1484/1557] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat
[1485/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat
[1486/1557] Building CXX object test/CMakeFiles/testneuron.dir/common/catch2_main.cpp.o
[1487/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat
[1488/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat
[1489/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat
[1490/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat
[1491/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat
[1492/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat
[1493/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat
[1494/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat
[1495/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat
[1496/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat
[1497/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat
[1498/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat
[1499/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat
[1500/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat
[1501/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat
[1502/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat
[1503/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat
[1504/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat
[1505/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat
[1506/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat
[1507/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat
[1508/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat
[1509/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat
[1510/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat
[1511/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat
[1512/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat
[1513/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat
[1514/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat
[1515/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat
[1516/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat
[1517/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat
[1518/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat
[1519/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat
[1520/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat
[1521/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat
[1522/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat
[1523/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat
[1524/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat
[1525/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat
[1526/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat
[1527/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat
[1528/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat
[1529/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat
[1530/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat
[1531/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat
[1532/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat
[1533/1557] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat
[1534/1557] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc
[1535/1557] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc
[1536/1557] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc
[1537/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc
[1538/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc
[1539/1557] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc
[1540/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc
[1541/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc
[1542/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc
[1543/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc
[1544/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc
[1545/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc
[1546/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc
[1547/1557] Linking CXX executable bin/test/testneuron
[1548/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc
[1549/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc
[1550/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc
[1551/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc
[1552/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc
[1553/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc
[1554/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc
[1555/1557] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc
[1556/1557] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/common/catch2_main.cpp.o
[1557/1557] Linking CXX executable bin/test/nrn-benchmarks
$ ccache -vs 2>/dev/null
Cache directory:    /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf
Stats updated:      Wed Apr 26 19:27:52 2023
Cacheable calls:     501 /  501 (100.0%)
  Hits:                0 /  501 ( 0.00%)
    Direct:            0
    Preprocessed:      0
  Misses:            501 /  501 (100.0%)
Successful lookups:
  Direct:              0 /  501 ( 0.00%)
  Preprocessed:        0 /  501 ( 0.00%)
Local storage:
  Cache size (GB):  0.40 / 5.00 ( 8.09%)
  Files:            6445
  Hits:                0 /  501 ( 0.00%)
  Misses:            501 /  501 (100.0%)
  Reads:            1002
  Writes:            984
$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg
$ cat src/nrnpython/setup.cfg
[install]
prefix=
$ ctest --output-on-failure
Test project /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build
        Start 209: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start 217: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
  1/268 Test #217: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ..................   Passed    1.10 sec
        Start 223: testcorenrn_conc::coreneuron_cpu_offline::preparation
  2/268 Test #223: testcorenrn_conc::coreneuron_cpu_offline::preparation ....................   Passed    0.43 sec
        Start 229: testcorenrn_deriv::coreneuron_cpu_offline::preparation
  3/268 Test #209: external_ringtest::coreneuron_cpu_mpi_offline::preparation ...............   Passed    1.74 sec
        Start 235: testcorenrn_gf::coreneuron_cpu_offline::preparation
  4/268 Test #229: testcorenrn_deriv::coreneuron_cpu_offline::preparation ...................   Passed    0.34 sec
        Start 241: testcorenrn_kin::coreneuron_cpu_offline::preparation
  5/268 Test #235: testcorenrn_gf::coreneuron_cpu_offline::preparation ......................   Passed    0.42 sec
        Start 246: testcorenrn_patstim::coreneuron_cpu_offline::preparation
  6/268 Test #241: testcorenrn_kin::coreneuron_cpu_offline::preparation .....................   Passed    0.41 sec
        Start 128: pyinit::nrniv_py3.10_python_check_sys_path::preparation
  7/268 Test #128: pyinit::nrniv_py3.10_python_check_sys_path::preparation ..................   Passed    0.02 sec
        Start 130: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation
  8/268 Test #130: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ...............   Passed    0.02 sec
        Start 132: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation
  9/268 Test #132: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................   Passed    0.02 sec
        Start 134: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation
 10/268 Test #134: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation .............   Passed    0.02 sec
        Start 136: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation
 11/268 Test #136: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ...........   Passed    0.02 sec
        Start 138: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation
 12/268 Test #138: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........   Passed    0.02 sec
        Start 140: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation
 13/268 Test #140: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ...........   Passed    0.02 sec
        Start 142: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation
 14/268 Test #142: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........   Passed    0.02 sec
        Start 144: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation
 15/268 Test #144: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ......   Passed    0.02 sec
        Start 146: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation
 16/268 Test #146: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ...   Passed    0.02 sec
        Start 148: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation
 17/268 Test #246: testcorenrn_patstim::coreneuron_cpu_offline::preparation .................   Passed    0.36 sec
        Start 252: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
 18/268 Test #148: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation .......   Passed    0.02 sec
        Start 150: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation
 19/268 Test #150: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation ....   Passed    0.02 sec
        Start 152: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation
 20/268 Test #152: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........   Passed    0.02 sec
        Start 154: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation
 21/268 Test #154: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation .....   Passed    0.02 sec
        Start 156: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation
 22/268 Test #156: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation .......   Passed    0.02 sec
        Start 158: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation
 23/268 Test #158: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation ....   Passed    0.02 sec
        Start 164: pyinit::nrniv_pydef_python_check_sys_path::preparation
 24/268 Test #164: pyinit::nrniv_pydef_python_check_sys_path::preparation ...................   Passed    0.02 sec
        Start 166: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
 25/268 Test #166: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................   Passed    0.02 sec
        Start 168: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
 26/268 Test #168: pyinit::nrniv_pydef_python_check_sys_prefix::preparation .................   Passed    0.02 sec
        Start 170: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
 27/268 Test #170: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation ..............   Passed    0.02 sec
        Start 172: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
 28/268 Test #172: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............   Passed    0.02 sec
        Start 174: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
 29/268 Test #174: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation .........   Passed    0.02 sec
        Start 176: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
 30/268 Test #176: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............   Passed    0.06 sec
        Start 178: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
 31/268 Test #178: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation .........   Passed    0.06 sec
        Start 180: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
 32/268 Test #180: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation .......   Passed    0.04 sec
        Start 182: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
 33/268 Test #252: testcorenrn_vecplay::coreneuron_cpu_offline::preparation .................   Passed    0.40 sec
        Start 264: testcorenrn_watch::coreneuron_cpu_offline::preparation
 34/268 Test #182: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation ....   Passed    0.03 sec
        Start 184: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
 35/268 Test #184: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........   Passed    0.03 sec
        Start 186: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
 36/268 Test #186: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation .....   Passed    0.03 sec
        Start 188: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
 37/268 Test #188: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation .........   Passed    0.03 sec
        Start 190: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
 38/268 Test #190: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ......   Passed    0.03 sec
        Start 192: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
 39/268 Test #192: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........   Passed    0.03 sec
        Start 194: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
 40/268 Test #194: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation .....   Passed    0.02 sec
        Start 202: external_ringtest::neuron
 41/268 Test #264: testcorenrn_watch::coreneuron_cpu_offline::preparation ...................   Passed    0.35 sec
        Start 203: external_ringtest::neuron_mpi
 42/268 Test #202: external_ringtest::neuron ................................................   Passed    1.07 sec
        Start 213: testcorenrn_bbcore::neuron
 43/268 Test #203: external_ringtest::neuron_mpi ............................................   Passed    0.91 sec
        Start 204: external_ringtest::neuron_mpi_python
 44/268 Test #213: testcorenrn_bbcore::neuron ...............................................   Passed    0.30 sec
        Start 214: testcorenrn_bbcore::coreneuron_cpu_online
 45/268 Test #214: testcorenrn_bbcore::coreneuron_cpu_online ................................   Passed    0.76 sec
        Start 215: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 46/268 Test #204: external_ringtest::neuron_mpi_python .....................................   Passed    1.36 sec
        Start 205: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
 47/268 Test #215: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ...............   Passed    0.60 sec
        Start 216: testcorenrn_bbcore::coreneuron_cpu_offline
 48/268 Test #216: testcorenrn_bbcore::coreneuron_cpu_offline ...............................   Passed    0.41 sec
        Start 219: testcorenrn_conc::neuron
 49/268 Test #219: testcorenrn_conc::neuron .................................................   Passed    0.29 sec
        Start 220: testcorenrn_conc::coreneuron_cpu_online
 50/268 Test #220: testcorenrn_conc::coreneuron_cpu_online ..................................   Passed    0.56 sec
        Start 221: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 51/268 Test #205: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................   Passed    1.76 sec
        Start 206: external_ringtest::coreneuron_cpu_mpi
 52/268 Test #221: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate .................   Passed    0.60 sec
        Start 222: testcorenrn_conc::coreneuron_cpu_offline
 53/268 Test #222: testcorenrn_conc::coreneuron_cpu_offline .................................   Passed    0.35 sec
        Start 225: testcorenrn_deriv::neuron
 54/268 Test #206: external_ringtest::coreneuron_cpu_mpi ....................................   Passed    1.11 sec
        Start 207: external_ringtest::coreneuron_cpu_mpi_python
 55/268 Test #225: testcorenrn_deriv::neuron ................................................   Passed    0.37 sec
        Start 226: testcorenrn_deriv::coreneuron_cpu_online
 56/268 Test #226: testcorenrn_deriv::coreneuron_cpu_online .................................   Passed    1.01 sec
        Start 227: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 57/268 Test #207: external_ringtest::coreneuron_cpu_mpi_python .............................   Passed    1.75 sec
        Start 208: external_ringtest::coreneuron_cpu_mpi_offline
 58/268 Test #227: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................   Passed    0.78 sec
        Start 228: testcorenrn_deriv::coreneuron_cpu_offline
 59/268 Test #228: testcorenrn_deriv::coreneuron_cpu_offline ................................   Passed    0.39 sec
        Start 237: testcorenrn_kin::neuron
 60/268 Test #208: external_ringtest::coreneuron_cpu_mpi_offline ............................   Passed    0.73 sec
        Start 231: testcorenrn_gf::neuron
 61/268 Test #237: testcorenrn_kin::neuron ..................................................   Passed    0.33 sec
        Start 238: testcorenrn_kin::coreneuron_cpu_online
 62/268 Test #231: testcorenrn_gf::neuron ...................................................   Passed    0.62 sec
        Start 232: testcorenrn_gf::coreneuron_cpu_online
 63/268 Test #238: testcorenrn_kin::coreneuron_cpu_online ...................................   Passed    0.73 sec
        Start 239: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 64/268 Test #232: testcorenrn_gf::coreneuron_cpu_online ....................................   Passed    0.88 sec
        Start 233: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 65/268 Test #239: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ..................   Passed    0.78 sec
        Start 240: testcorenrn_kin::coreneuron_cpu_offline
 66/268 Test #240: testcorenrn_kin::coreneuron_cpu_offline ..................................   Passed    0.43 sec
        Start   1: cmd_interface_test
 67/268 Test   #1: cmd_interface_test .......................................................   Passed    0.38 sec
        Start   2: interleave_info_constructor_test
 68/268 Test   #2: interleave_info_constructor_test .........................................   Passed    0.26 sec
        Start   3: alignment_test
 69/268 Test #233: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ...................   Passed    1.21 sec
        Start 234: testcorenrn_gf::coreneuron_cpu_offline
 70/268 Test   #3: alignment_test ...........................................................   Passed    0.23 sec
        Start   4: queuing_test
 71/268 Test   #4: queuing_test .............................................................   Passed    0.23 sec
        Start   5: test-solver
 72/268 Test #234: testcorenrn_gf::coreneuron_cpu_offline ...................................   Passed    0.48 sec
        Start 243: testcorenrn_patstim::neuron
 73/268 Test #243: testcorenrn_patstim::neuron ..............................................   Passed    0.39 sec
        Start 244: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
 74/268 Test   #5: test-solver ..............................................................   Passed    0.69 sec
        Start   6: lfp_test
 75/268 Test   #6: lfp_test .................................................................   Passed    0.50 sec
        Start   7: unit_tests::testneuron
 76/268 Test   #7: unit_tests::testneuron ...................................................   Passed    0.43 sec
        Start   8: ringtest
 77/268 Test #244: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ..................   Passed    1.18 sec
        Start 245: testcorenrn_patstim::coreneuron_cpu_offline
 78/268 Test   #8: ringtest .................................................................   Passed    0.21 sec
        Start   9: connect_dend
 79/268 Test #245: testcorenrn_patstim::coreneuron_cpu_offline ..............................   Passed    0.29 sec
        Start 248: testcorenrn_vecplay::neuron
 80/268 Test   #9: connect_dend .............................................................   Passed    0.16 sec
        Start  10: mpi_init::nrniv_mpiopt
 81/268 Test #248: testcorenrn_vecplay::neuron ..............................................   Passed    0.47 sec
        Start 249: testcorenrn_vecplay::coreneuron_cpu_online
 82/268 Test  #10: mpi_init::nrniv_mpiopt ...................................................   Passed    0.45 sec
        Start  11: mpi_init::nrniv_nrnmpi_init
 83/268 Test  #11: mpi_init::nrniv_nrnmpi_init ..............................................   Passed    0.40 sec
        Start  12: mpi_init::python_nrnmpi_init
 84/268 Test #249: testcorenrn_vecplay::coreneuron_cpu_online ...............................   Passed    0.99 sec
        Start 250: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 85/268 Test  #12: mpi_init::python_nrnmpi_init .............................................   Passed    0.86 sec
        Start  13: mpi_init::python_mpienv
 86/268 Test #250: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ..............   Passed    0.67 sec
        Start 251: testcorenrn_vecplay::coreneuron_cpu_offline
 87/268 Test  #13: mpi_init::python_mpienv ..................................................   Passed    0.77 sec
        Start  14: mpi_init::nrniv_mpiexec_mpiopt
 88/268 Test #251: testcorenrn_vecplay::coreneuron_cpu_offline ..............................   Passed    0.41 sec
        Start 260: testcorenrn_watch::neuron
 89/268 Test  #14: mpi_init::nrniv_mpiexec_mpiopt ...........................................   Passed    0.27 sec
        Start  15: mpi_init::nrniv_mpiexec_nrnmpi_init
 90/268 Test #260: testcorenrn_watch::neuron ................................................   Passed    0.33 sec
        Start 261: testcorenrn_watch::coreneuron_cpu_online
 91/268 Test  #15: mpi_init::nrniv_mpiexec_nrnmpi_init ......................................   Passed    0.26 sec
        Start  16: mpi_init::python_mpiexec_nrnmpi_init
 92/268 Test #261: testcorenrn_watch::coreneuron_cpu_online .................................   Passed    0.71 sec
        Start 262: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
 93/268 Test  #16: mpi_init::python_mpiexec_nrnmpi_init .....................................   Passed    0.83 sec
        Start  17: mpi_init::python_mpiexec_mpienv
 94/268 Test #262: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................   Passed    0.71 sec
        Start 263: testcorenrn_watch::coreneuron_cpu_offline
 95/268 Test #263: testcorenrn_watch::coreneuron_cpu_offline ................................   Passed    0.48 sec
        Start 266: testcorenrn_netstimdirect::direct_netstimdirect
 96/268 Test  #17: mpi_init::python_mpiexec_mpienv ..........................................   Passed    0.94 sec
        Start  18: pynrn::basic_tests_py3.10
 97/268 Test #266: testcorenrn_netstimdirect::direct_netstimdirect ..........................   Passed    1.01 sec
        Start 267: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
 98/268 Test #267: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate .........   Passed    0.88 sec
        Start  19: coverage_tests::cover_tests
        Start  20: example_nmodl::ca_ap_hoc
 99/268 Test  #20: example_nmodl::ca_ap_hoc .................................................   Passed    0.48 sec
        Start  21: example_nmodl::cabpump_hoc
100/268 Test  #21: example_nmodl::cabpump_hoc ...............................................   Passed    0.27 sec
        Start  22: example_nmodl::cachan_hoc
101/268 Test  #22: example_nmodl::cachan_hoc ................................................   Passed    0.15 sec
        Start  23: example_nmodl::cadif_hoc
102/268 Test  #19: coverage_tests::cover_tests ..............................................   Passed    0.94 sec
        Start  24: example_nmodl::cadifusl_hoc
103/268 Test  #23: example_nmodl::cadif_hoc .................................................   Passed    0.17 sec
        Start  25: example_nmodl::cadifusl1_hoc
104/268 Test  #24: example_nmodl::cadifusl_hoc ..............................................   Passed    0.15 sec
        Start  26: example_nmodl::cadifusl2_hoc
105/268 Test  #26: example_nmodl::cadifusl2_hoc .............................................   Passed    0.14 sec
        Start  27: example_nmodl::cagk_hoc
106/268 Test  #25: example_nmodl::cadifusl1_hoc .............................................   Passed    0.15 sec
        Start  28: example_nmodl::capmp_hoc
107/268 Test  #27: example_nmodl::cagk_hoc ..................................................   Passed    0.14 sec
        Start  29: example_nmodl::cv_hoc
108/268 Test  #28: example_nmodl::capmp_hoc .................................................   Passed    0.16 sec
        Start  30: example_nmodl::fh_hoc
109/268 Test  #29: example_nmodl::cv_hoc ....................................................   Passed    0.14 sec
        Start  31: example_nmodl::fit1_hoc
110/268 Test  #30: example_nmodl::fh_hoc ....................................................   Passed    0.14 sec
        Start  32: example_nmodl::gap_hoc
111/268 Test  #31: example_nmodl::fit1_hoc ..................................................   Passed    0.14 sec
        Start  33: example_nmodl::hh1_hoc
112/268 Test  #32: example_nmodl::gap_hoc ...................................................   Passed    0.14 sec
        Start  34: example_nmodl::hhvect_hoc
113/268 Test  #33: example_nmodl::hh1_hoc ...................................................   Passed    0.20 sec
        Start  35: example_nmodl::nacum_hoc
114/268 Test  #34: example_nmodl::hhvect_hoc ................................................   Passed    0.19 sec
        Start  36: example_nmodl::nadifl1_hoc
115/268 Test  #35: example_nmodl::nacum_hoc .................................................   Passed    0.23 sec
        Start  37: example_nmodl::nadifl2_hoc
116/268 Test  #36: example_nmodl::nadifl1_hoc ...............................................   Passed    0.23 sec
        Start  38: example_nmodl::nadifl3_hoc
117/268 Test  #37: example_nmodl::nadifl2_hoc ...............................................   Passed    0.16 sec
        Start  39: example_nmodl::nadifl4_hoc
118/268 Test  #38: example_nmodl::nadifl3_hoc ...............................................   Passed    0.16 sec
        Start  40: example_nmodl::obj_ex_hoc
119/268 Test  #40: example_nmodl::obj_ex_hoc ................................................   Passed    0.14 sec
        Start  41: example_nmodl::order_hoc
120/268 Test  #39: example_nmodl::nadifl4_hoc ...............................................   Passed    0.17 sec
        Start  42: example_nmodl::passiv_hoc
121/268 Test  #42: example_nmodl::passiv_hoc ................................................   Passed    0.23 sec
        Start  43: example_nmodl::stim1_hoc
122/268 Test  #41: example_nmodl::order_hoc .................................................   Passed    0.28 sec
        Start  44: example_nmodl::syn1_hoc
123/268 Test  #43: example_nmodl::stim1_hoc .................................................   Passed    0.18 sec
        Start  45: example_nmodl::synpre_hoc
124/268 Test  #44: example_nmodl::syn1_hoc ..................................................   Passed    0.15 sec
        Start  46: example_nmodl::tstextrn_hoc
125/268 Test  #45: example_nmodl::synpre_hoc ................................................   Passed    0.15 sec
        Start  47: example_nmodl::tstpnt1_hoc
126/268 Test  #46: example_nmodl::tstextrn_hoc ..............................................   Passed    0.14 sec
        Start  48: example_nmodl::tstpnt2_hoc
127/268 Test  #47: example_nmodl::tstpnt1_hoc ...............................................   Passed    0.14 sec
        Start  49: example_nmodl::tstvec_hoc
128/268 Test  #48: example_nmodl::tstpnt2_hoc ...............................................   Passed    0.14 sec
        Start  50: example_nmodl::cagkftab_py
129/268 Test  #49: example_nmodl::tstvec_hoc ................................................   Passed    0.24 sec
        Start  51: example_nmodl::expsynspine_py
130/268 Test  #51: example_nmodl::expsynspine_py ............................................   Passed    0.70 sec
        Start  52: example_nmodl::nonlin_py
131/268 Test  #52: example_nmodl::nonlin_py .................................................   Passed    1.20 sec
        Start  53: example_nmodl::tstpnt1_py
132/268 Test  #53: example_nmodl::tstpnt1_py ................................................   Passed    0.63 sec
        Start  54: example_nmodl::tstpnt2_py
133/268 Test  #18: pynrn::basic_tests_py3.10 ................................................   Passed    7.83 sec
        Start  55: example_nmodl::vlag_py
134/268 Test  #54: example_nmodl::tstpnt2_py ................................................   Passed    0.68 sec
        Start  56: hoctests::test_loadbal_hoc
135/268 Test  #55: example_nmodl::vlag_py ...................................................   Passed    0.71 sec
        Start  57: hoctests::perf1_hoc
136/268 Test  #56: hoctests::test_loadbal_hoc ...............................................   Passed    0.44 sec
        Start  58: hoctests::test1_hoc
137/268 Test  #58: hoctests::test1_hoc ......................................................   Passed    0.33 sec
        Start  59: hoctests::test2_hoc
138/268 Test  #50: example_nmodl::cagkftab_py ...............................................   Passed    4.25 sec
        Start  60: hoctests::test3_hoc
139/268 Test  #60: hoctests::test3_hoc ......................................................   Passed    0.15 sec
        Start  61: hoctests::test4_hoc
140/268 Test  #59: hoctests::test2_hoc ......................................................   Passed    0.19 sec
        Start  62: hoctests::test5_hoc
141/268 Test  #61: hoctests::test4_hoc ......................................................   Passed    0.14 sec
        Start  63: hoctests::test6_hoc
142/268 Test  #62: hoctests::test5_hoc ......................................................   Passed    0.14 sec
        Start  64: hoctests::test7_hoc
143/268 Test  #63: hoctests::test6_hoc ......................................................   Passed    0.13 sec
        Start  65: hoctests::test8_hoc
144/268 Test  #64: hoctests::test7_hoc ......................................................   Passed    0.13 sec
        Start  66: hoctests::test9_hoc
145/268 Test  #65: hoctests::test8_hoc ......................................................   Passed    0.13 sec
        Start  67: hoctests::test_kschan_py
146/268 Test  #66: hoctests::test9_hoc ......................................................   Passed    0.13 sec
        Start  68: hoctests::test_neurondemo_py
147/268 Test  #57: hoctests::perf1_hoc ......................................................   Passed    1.25 sec
        Start  69: hoctests::test_nrniv-launch_py
148/268 Test  #69: hoctests::test_nrniv-launch_py ...........................................   Passed    0.59 sec
        Start  70: hoctests::test_shape_py
149/268 Test  #68: hoctests::test_neurondemo_py .............................................   Passed    0.70 sec
        Start  71: hoctests::test1_py
150/268 Test  #67: hoctests::test_kschan_py .................................................   Passed    0.73 sec
        Start  72: hoctests::test2_py
151/268 Test  #70: hoctests::test_shape_py ..................................................   Passed    0.78 sec
        Start  73: hoctests::test9_py
152/268 Test  #71: hoctests::test1_py .......................................................   Passed    0.75 sec
        Start  79: coreneuron_standalone::test_nrn_corenrn_standalone
153/268 Test  #72: hoctests::test2_py .......................................................   Passed    0.74 sec
        Start  80: nmodl_tests::test_table
154/268 Test  #73: hoctests::test9_py .......................................................   Passed    0.84 sec
        Start  81: nmodl_tests::test_disc
155/268 Test  #80: nmodl_tests::test_table ..................................................   Passed    1.03 sec
        Start  82: nmodl_tests::test_function_table
156/268 Test  #79: coreneuron_standalone::test_nrn_corenrn_standalone .......................   Passed    1.18 sec
        Start  83: nmodl_tests::test_kinetic
157/268 Test  #81: nmodl_tests::test_disc ...................................................   Passed    0.98 sec
        Start  84: coreneuron_modtests::version_macros
158/268 Test  #82: nmodl_tests::test_function_table .........................................   Passed    1.01 sec
        Start  85: coreneuron_modtests::fornetcon_py_cpu
159/268 Test  #83: nmodl_tests::test_kinetic ................................................   Passed    0.92 sec
        Start  86: coreneuron_modtests::direct_py_cpu
160/268 Test  #84: coreneuron_modtests::version_macros ......................................   Passed    1.24 sec
        Start  87: coreneuron_modtests::direct_hoc_cpu
161/268 Test  #85: coreneuron_modtests::fornetcon_py_cpu ....................................   Passed    1.12 sec
        Start  88: coreneuron_modtests::spikes_py_cpu
162/268 Test  #86: coreneuron_modtests::direct_py_cpu .......................................   Passed    1.10 sec
        Start  89: coreneuron_modtests::spikes_file_mode_py_cpu
163/268 Test  #87: coreneuron_modtests::direct_hoc_cpu ......................................   Passed    0.84 sec
        Start  90: coreneuron_modtests::fast_imem_py_cpu
164/268 Test  #89: coreneuron_modtests::spikes_file_mode_py_cpu .............................   Passed    1.36 sec
        Start  91: coreneuron_modtests::datareturn_py_cpu
165/268 Test  #88: coreneuron_modtests::spikes_py_cpu .......................................   Passed    1.41 sec
        Start  92: coreneuron_modtests::test_units_py_cpu
166/268 Test  #90: coreneuron_modtests::fast_imem_py_cpu ....................................   Passed    1.05 sec
        Start  93: coreneuron_modtests::test_netmove_py_cpu
167/268 Test  #92: coreneuron_modtests::test_units_py_cpu ...................................   Passed    0.75 sec
        Start  94: coreneuron_modtests::test_pointer_py_cpu
168/268 Test  #91: coreneuron_modtests::datareturn_py_cpu ...................................   Passed    1.17 sec
        Start  95: coreneuron_modtests::test_watchrange_py_cpu
169/268 Test  #93: coreneuron_modtests::test_netmove_py_cpu .................................   Passed    1.63 sec
        Start  96: coreneuron_modtests::test_psolve_py_cpu
170/268 Test  #95: coreneuron_modtests::test_watchrange_py_cpu ..............................   Passed    0.94 sec
        Start  97: coreneuron_modtests::test_ba_py_cpu
171/268 Test  #96: coreneuron_modtests::test_psolve_py_cpu ..................................   Passed    0.94 sec
        Start  98: coreneuron_modtests::test_natrans_py_cpu
172/268 Test  #97: coreneuron_modtests::test_ba_py_cpu ......................................   Passed    0.89 sec
        Start 102: nmodl_tests_coreneuron::test_table_coreneuron_cpu
173/268 Test  #98: coreneuron_modtests::test_natrans_py_cpu .................................   Passed    0.88 sec
        Start 103: nmodl_tests_coreneuron::test_disc_coreneuron_cpu
174/268 Test #102: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................   Passed    0.88 sec
        Start 104: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu
175/268 Test  #94: coreneuron_modtests::test_pointer_py_cpu .................................   Passed    3.67 sec
        Start 105: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu
176/268 Test #103: nmodl_tests_coreneuron::test_disc_coreneuron_cpu .........................   Passed    0.92 sec
        Start 106: modlunit_unitstest
177/268 Test #104: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ...............   Passed    0.90 sec
        Start 107: modlunit_hh
178/268 Test #106: modlunit_unitstest .......................................................   Passed    0.25 sec
        Start 108: modlunit_stim
179/268 Test #107: modlunit_hh ..............................................................   Passed    0.20 sec
        Start 109: modlunit_pattern
180/268 Test #108: modlunit_stim ............................................................   Passed    0.10 sec
        Start 110: pyinit::nrniv_script.py
181/268 Test #109: modlunit_pattern .........................................................   Passed    0.10 sec
        Start 111: pyinit::nrniv_script.py_error
182/268 Test #110: pyinit::nrniv_script.py ..................................................   Passed    0.15 sec
        Start 112: pyinit::nrniv_two_scripts.py
183/268 Test #105: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ......................   Passed    0.78 sec
        Start 113: pyinit::nrniv_two_scripts.py_error_check_code
184/268 Test #111: pyinit::nrniv_script.py_error ............................................   Passed    0.14 sec
        Start 114: pyinit::nrniv_two_scripts.py_error_check_output
185/268 Test #112: pyinit::nrniv_two_scripts.py .............................................   Passed    0.14 sec
        Start 115: pyinit::nrniv_python_command
186/268 Test #113: pyinit::nrniv_two_scripts.py_error_check_code ............................   Passed    0.13 sec
        Start 116: pyinit::nrniv_python_command_error
187/268 Test #114: pyinit::nrniv_two_scripts.py_error_check_output ..........................   Passed    0.13 sec
        Start 117: pyinit::nrniv_python_script.py
188/268 Test #116: pyinit::nrniv_python_command_error .......................................   Passed    0.13 sec
        Start 118: pyinit::nrniv_python_script.py_error
189/268 Test #115: pyinit::nrniv_python_command .............................................   Passed    0.14 sec
        Start 119: pyinit::nrniv_python_command_twice
190/268 Test #117: pyinit::nrniv_python_script.py ...........................................   Passed    0.13 sec
        Start 120: pyinit::nrniv_python_script.py_twice
191/268 Test #119: pyinit::nrniv_python_command_twice .......................................   Passed    0.13 sec
        Start 121: pyinit::nrniv_python_command_args
192/268 Test #118: pyinit::nrniv_python_script.py_error .....................................   Passed    0.13 sec
        Start 122: pyinit::nrniv_python_script.py_args
193/268 Test #120: pyinit::nrniv_python_script.py_twice .....................................   Passed    0.13 sec
        Start 123: pyinit::nrniv_nopython_PythonObject
194/268 Test #123: pyinit::nrniv_nopython_PythonObject ......................................   Passed    0.11 sec
        Start 124: pyinit::nrniv_nopython_PythonObject_pyexe
195/268 Test #122: pyinit::nrniv_python_script.py_args ......................................   Passed    0.13 sec
        Start 125: pyinit::nrniv_nopython_PythonObject_pyenv
196/268 Test #121: pyinit::nrniv_python_command_args ........................................   Passed    0.13 sec
        Start 126: pyinit::nrniv_py3.10_python_command_version_check
197/268 Test #124: pyinit::nrniv_nopython_PythonObject_pyexe ................................   Passed    0.11 sec
        Start 127: pyinit::nrniv_py3.10_python_check_sys_path
198/268 Test #125: pyinit::nrniv_nopython_PythonObject_pyenv ................................   Passed    0.11 sec
        Start 129: pyinit::nrniv_py3.10_nrnpython_check_sys_path
199/268 Test #126: pyinit::nrniv_py3.10_python_command_version_check ........................   Passed    0.13 sec
        Start 131: pyinit::nrniv_py3.10_python_check_sys_prefix
200/268 Test #127: pyinit::nrniv_py3.10_python_check_sys_path ...............................   Passed    0.14 sec
        Start 133: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix
201/268 Test #129: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................   Passed    0.13 sec
        Start 135: pyinit::nrniv_py3.10_python_check_sys_exec_prefix
202/268 Test #131: pyinit::nrniv_py3.10_python_check_sys_prefix .............................   Passed    0.13 sec
        Start 137: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix
203/268 Test #133: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix ..........................   Passed    0.14 sec
        Start 139: pyinit::nrniv_py3.10_python_check_sys_base_prefix
204/268 Test #135: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................   Passed    0.14 sec
        Start 141: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix
205/268 Test #137: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix .....................   Passed    0.14 sec
        Start 143: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix
206/268 Test #139: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................   Passed    0.14 sec
        Start 145: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix
207/268 Test #141: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix .....................   Passed    0.14 sec
        Start 147: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding
208/268 Test #143: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ...................   Passed    0.14 sec
        Start 149: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding
209/268 Test #145: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................   Passed    0.14 sec
        Start 151: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding
210/268 Test #147: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding ....................   Passed    0.14 sec
        Start 153: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding
211/268 Test #149: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding .................   Passed    0.14 sec
        Start 155: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding
212/268 Test #151: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding .....................   Passed    0.14 sec
        Start 157: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding
213/268 Test #153: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding ..................   Passed    0.14 sec
        Start 159: pyinit::nrniv_py3.10_python_command_import_neuron
214/268 Test #155: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding ....................   Passed    0.14 sec
        Start 160: pyinit::py3.10_command_import_neuron
215/268 Test #157: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding .................   Passed    0.14 sec
        Start 161: pyinit::nrniv_py3.10_hoc_command_nrnpython
216/268 Test #161: pyinit::nrniv_py3.10_hoc_command_nrnpython ...............................   Passed    0.33 sec
        Start 162: pyinit::nrniv_pydef_python_command_version_check
217/268 Test #162: pyinit::nrniv_pydef_python_command_version_check .........................   Passed    0.19 sec
        Start 163: pyinit::nrniv_pydef_python_check_sys_path
218/268 Test #159: pyinit::nrniv_py3.10_python_command_import_neuron ........................   Passed    0.66 sec
        Start 165: pyinit::nrniv_pydef_nrnpython_check_sys_path
219/268 Test #160: pyinit::py3.10_command_import_neuron .....................................   Passed    0.65 sec
        Start 167: pyinit::nrniv_pydef_python_check_sys_prefix
220/268 Test #163: pyinit::nrniv_pydef_python_check_sys_path ................................   Passed    0.14 sec
        Start 169: pyinit::nrniv_pydef_nrnpython_check_sys_prefix
221/268 Test #165: pyinit::nrniv_pydef_nrnpython_check_sys_path .............................   Passed    0.14 sec
        Start 171: pyinit::nrniv_pydef_python_check_sys_exec_prefix
222/268 Test #167: pyinit::nrniv_pydef_python_check_sys_prefix ..............................   Passed    0.14 sec
        Start 173: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix
223/268 Test #169: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ...........................   Passed    0.14 sec
        Start 175: pyinit::nrniv_pydef_python_check_sys_base_prefix
224/268 Test #171: pyinit::nrniv_pydef_python_check_sys_exec_prefix .........................   Passed    0.14 sec
        Start 177: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix
225/268 Test #173: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ......................   Passed    0.14 sec
        Start 179: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix
226/268 Test #175: pyinit::nrniv_pydef_python_check_sys_base_prefix .........................   Passed    0.14 sec
        Start 181: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix
227/268 Test #179: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix ....................   Passed    0.14 sec
        Start 183: pyinit::nrniv_pydef_python_check_sys_stderr.encoding
228/268 Test #177: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ......................   Passed    0.14 sec
        Start 185: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding
229/268 Test #181: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix .................   Passed    0.14 sec
        Start 187: pyinit::nrniv_pydef_python_check_sys_stdin.encoding
230/268 Test #185: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding ..................   Passed    0.14 sec
        Start 189: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding
231/268 Test #183: pyinit::nrniv_pydef_python_check_sys_stderr.encoding .....................   Passed    0.14 sec
        Start 191: pyinit::nrniv_pydef_python_check_sys_stdout.encoding
232/268 Test #187: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ......................   Passed    0.20 sec
        Start 193: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding
233/268 Test #191: pyinit::nrniv_pydef_python_check_sys_stdout.encoding .....................   Passed    0.19 sec
        Start 195: pyinit::nrniv_pydef_python_command_import_neuron
234/268 Test #189: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ...................   Passed    0.23 sec
        Start 196: pyinit::pydef_command_import_neuron
235/268 Test #193: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding ..................   Passed    0.17 sec
        Start 197: pyinit::nrniv_pydef_hoc_command_nrnpython
236/268 Test #197: pyinit::nrniv_pydef_hoc_command_nrnpython ................................   Passed    0.21 sec
        Start 198: external_nrntest
237/268 Test #195: pyinit::nrniv_pydef_python_command_import_neuron .........................   Passed    0.80 sec
        Start 218: testcorenrn_bbcore::compare_results
238/268 Test #196: pyinit::pydef_command_import_neuron ......................................   Passed    0.79 sec
        Start 224: testcorenrn_conc::compare_results
239/268 Test #218: testcorenrn_bbcore::compare_results ......................................   Passed    0.17 sec
        Start 230: testcorenrn_deriv::compare_results
240/268 Test #224: testcorenrn_conc::compare_results ........................................   Passed    0.15 sec
        Start 236: testcorenrn_gf::compare_results
241/268 Test #230: testcorenrn_deriv::compare_results .......................................   Passed    0.04 sec
        Start 242: testcorenrn_kin::compare_results
242/268 Test #236: testcorenrn_gf::compare_results ..........................................   Passed    0.04 sec
        Start 247: testcorenrn_patstim::compare_results
243/268 Test #242: testcorenrn_kin::compare_results .........................................   Passed    0.04 sec
        Start 253: testcorenrn_vecplay::compare_results
244/268 Test #247: testcorenrn_patstim::compare_results .....................................   Passed    0.04 sec
        Start 265: testcorenrn_watch::compare_results
245/268 Test #253: testcorenrn_vecplay::compare_results .....................................   Passed    0.03 sec
        Start 268: testcorenrn_netstimdirect::compare_results
246/268 Test #265: testcorenrn_watch::compare_results .......................................   Passed    0.03 sec
247/268 Test #268: testcorenrn_netstimdirect::compare_results ...............................   Passed    0.03 sec
        Start  75: parallel::partrans
248/268 Test  #75: parallel::partrans .......................................................   Passed    1.18 sec
        Start  76: parallel::netpar
249/268 Test  #76: parallel::netpar .........................................................   Passed    1.03 sec
        Start  77: parallel::bas
250/268 Test  #77: parallel::bas ............................................................   Passed    3.19 sec
        Start  78: parallel::nrntest_fast
251/268 Test  #78: parallel::nrntest_fast ...................................................   Passed    1.32 sec
        Start  99: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
252/268 Test  #99: coreneuron_modtests::spikes_mpi_file_mode_py_cpu .........................   Passed    1.25 sec
        Start 100: coreneuron_modtests::inputpresyn_py_cpu
253/268 Test #100: coreneuron_modtests::inputpresyn_py_cpu ..................................   Passed    1.18 sec
254/268 Test #198: external_nrntest .........................................................   Passed   31.80 sec
        Start 258: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
255/268 Test #258: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................   Passed    0.34 sec
        Start 199: reduced_dentate::neuron
256/268 Test #199: reduced_dentate::neuron ..................................................   Passed   21.94 sec
        Start 200: reduced_dentate::coreneuron_cpu
257/268 Test #200: reduced_dentate::coreneuron_cpu ..........................................   Passed   23.03 sec
        Start 210: external_ringtest::coreneuron_cpu_mpi_threads
258/268 Test #210: external_ringtest::coreneuron_cpu_mpi_threads ............................   Passed    1.27 sec
        Start 211: external_ringtest::coreneuron_cpu_mpi_threads_python
259/268 Test #211: external_ringtest::coreneuron_cpu_mpi_threads_python .....................   Passed    1.42 sec
        Start 254: testcorenrn_vecevent::neuron
260/268 Test #254: testcorenrn_vecevent::neuron .............................................   Passed    0.39 sec
        Start 255: testcorenrn_vecevent::coreneuron_cpu_online
261/268 Test #255: testcorenrn_vecevent::coreneuron_cpu_online ..............................   Passed    0.81 sec
        Start 256: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
262/268 Test #256: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .............   Passed    1.12 sec
        Start 257: testcorenrn_vecevent::coreneuron_cpu_offline
263/268 Test #257: testcorenrn_vecevent::coreneuron_cpu_offline .............................   Passed    0.36 sec
        Start  74: parallel::subworld
264/268 Test  #74: parallel::subworld .......................................................   Passed    1.27 sec
        Start 101: coreneuron_modtests::test_subworlds_py_cpu
265/268 Test #101: coreneuron_modtests::test_subworlds_py_cpu ...............................   Passed    2.01 sec
        Start 201: reduced_dentate::compare_results
        Start 212: external_ringtest::compare_results
        Start 259: testcorenrn_vecevent::compare_results
266/268 Test #201: reduced_dentate::compare_results .........................................   Passed    0.04 sec
267/268 Test #212: external_ringtest::compare_results .......................................   Passed    0.05 sec
268/268 Test #259: testcorenrn_vecevent::compare_results ....................................   Passed    0.05 sec

100% tests passed, 0 tests failed out of 268

Total Test time (real) = 130.72 sec
$ cmake --build . --target install
[0/2] Re-checking globbed directories...
[1/5] Update hh.mod for CoreNEURON compatibility
[2/5] Generating help_data.dat
[3/5] cd /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[4/5] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:135: UserWarning: "/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:running build_scripts
[4/5] Install the project...
-- Install configuration: "Custom"
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/bin/mod2c_core
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/share/mod2c/nrnunits.lib
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/lib/libcoreneuron-core.a
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/nrniv
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/nrniv/profiler_interface.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/nrniv/nrniv_decl.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/engine.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/nrnconf.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/gpu
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/gpu/nrn_acc_manager.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mechanism
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mechanism/membfunc.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mechanism/register_mech.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mechanism/mechanism.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech_mapping.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mechanism/eion.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/cfile
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/cfile/cabvars.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mpi
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mpi/core
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mpi/core/nrnmpi.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpidec.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpi.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mpi/lib
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mpi/lib/nrnmpi.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpiuse.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/config
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/config/config.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/config/version_macros.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/config/neuron_version.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/coreneuron.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/network
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/network/multisend.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/network/have2want.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/network/netpar.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/network/tnode.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/network/netcon.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/network/partrans.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/network/tqueue.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/network/netcvode.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io/nrn2core_direct.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io/mech_report.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io/file_utils.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io/core2nrn_data_return.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io/prcellstate.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io/nrn_setup.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io/output_spikes.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io/lfp.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io/setup_fornetcon.hpp
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-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_handler.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io/reports/sonata_report_handler.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/io/reports/nrnreport.hpp
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-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/permute/cellorder.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include//coreneuron/permute/data_layout.hpp
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-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/bin/mod2c_core
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-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/lib/libcorenrnmech_internal.dylib
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-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/hocassrt.h
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-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/oc_ansi.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/hoclist.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/membfunc.h
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-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrnversionmacros.h
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-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/crout.hpp
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-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/md1redef.h
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrniv_mf.h
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-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/deflate.hpp
-- Installing: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/errcodes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/file_utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/euler_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/hocdec.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/hocgetsym.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/section.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/euler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/options.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrnapi.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrncvode.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrnsemanticversion.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/spmatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/ocfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/hoc_membf.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrnisaac.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/parse_with_deps.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrnredef.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/cspredef.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/dimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrniv_mf.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrn_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/deflate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/errcodes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/file_utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrnassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/spconfig.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/runge.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrnoc_ml.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/nrnpy_hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/mech_api.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/mcran4.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/hocparse.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/ssimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/open64features.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/sse.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/threefry.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/conventional
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/philox.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/gsl_microrng.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/aes.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/array.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/u01fixedpt.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/boxmuller.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/uniform.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/Random123/ars.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/treeset.h
-- Up-to-date: /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/include/cspmatrix.h
.: replacing existing signature
.: replacing existing signature
.: replacing existing signature
.: replacing existing signature
.: replacing existing signature
"install" of folder "nrn" of folder "cellular" of folder "hpc" of folder "J674214" of folder "P118457" of folder "1" of folder "builds" of folder "gitlab-runner" of folder "Users"
26:34: execution error: Finder got an error: AppleEvent timed out. (-1712)
/usr/bin/xcrun
/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod"

Creating 'arm64' directory for .o files.

MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./mcna.o ./nacaex.o ./nachan.o ./release.o
 -> NMODL ../cabpump.mod
 -> NMODL ../cachan1.mod
 -> NMODL ../camchan.mod
 -> Compiling mod_func.cpp
Translating camchan.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/camchan.cpp
Translating cabpump.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cabpump.cpp
Translating cachan1.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cachan1.cpp
Thread Safe
Thread Safe
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL ../capump.mod
 -> NMODL ../invlfire.mod
 -> NMODL ../khhchan.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/invlfire.cpp
Thread Safe
Translating capump.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/capump.cpp
Translating khhchan.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
Thread Safe
 -> NMODL ../mcna.mod
 -> NMODL ../nachan.mod
 -> NMODL ../nacaex.mod
 -> NMODL ../release.mod
Translating mcna.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/mcna.cpp
Translating nacaex.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
Thread Safe
Translating nachan.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nachan.cpp
Thread Safe
 -> Compiling cabpump.cpp
 -> Compiling cachan1.cpp
Translating release.mod into /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/release.cpp
 -> Compiling camchan.cpp
Thread Safe
 -> Compiling capump.cpp
 -> Compiling invlfire.cpp
 -> Compiling khhchan.cpp
 -> Compiling mcna.cpp
 -> Compiling nacaex.cpp
 -> Compiling nachan.cpp
 -> Compiling release.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
NEURON -- VERSION + HEAD (2e15478+) 2023-04-26
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2022
See http://neuron.yale.edu/neuron/credits

Additional mechanisms from files
 "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod"
$ export PATH=${INSTALL_DIR}/bin:${PATH}
$ export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python/
$ if [[ -f "${INSTALL_DIR}/bin/nrn-enable-sanitizer" ]]; then
$ echo --- bin/nrn-enable-sanitizer ---
--- bin/nrn-enable-sanitizer ---
$ cat bin/nrn-enable-sanitizer
#!/usr/bin/env bash
prefix="${NRNHOME:-/Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/install}"
export NRN_SANITIZER_PRELOAD_VAR=DYLD_INSERT_LIBRARIES
export NRN_SANITIZER_PRELOAD_VAL=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
if [[ "$1" == "--preload" ]]; then
  shift
  if [[ "$1" == "python" ]]; then
    # nrn-enable-sanitizer --preload python is used in the CI, but for it to
    # work on macOS we need to substitute the real Python binary in place of any
    # shims. This is done from CMake, and PYTHON_EXECUTABLE contains the real
    # binary.
    shift
    DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 /Users/gitlab-runner/builds/1/P118457/J674214/hpc/cellular/nrn/venv/bin/python "$@"
  else
    DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@"
  fi
else
  MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@"
fi
$ echo ---
---
$ nrn_enable_sanitizer=${INSTALL_DIR}/bin/nrn-enable-sanitizer
$ nrn_enable_sanitizer_preload="${nrn_enable_sanitizer} --preload"
$ else
$ $PYTHON --version && ${nrn_enable_sanitizer_preload} python -c 'import neuron; neuron.test()'
Python 3.10.8
testBytesize (neuron.tests.test_vector.VectorTestCase)
Test that Vector.__array_interface__ returns the proper bytesize (of a double) ... ok
testEndian (neuron.tests.test_vector.VectorTestCase)
Test that Vector.__array_interface__ returns the proper byteorder (endian) ... ok
testNumpyInteraction (neuron.tests.test_vector.VectorTestCase)
Testing numpy.array <=> hoc.Vector interaction ... ok
testPerformance (neuron.tests.test_vector.VectorTestCase)
Test performance of Vector<->list,array ... ok
testABI (neuron.tests.test_neuron.NeuronTestCase)
Test use of some  Py_LIMITED_API for python3. ... ok
testExtendedSection (neuron.tests.test_neuron.NeuronTestCase) ... 

Executed "l = range(1000000)".  Elapsed = 0.000010 s
Executed "v = h.Vector(l)".  Elapsed = 0.100108 s
inplace:
Executed "v.from_python(l)".  Elapsed = 0.046062 s
Executed "a = numpy.array(v)".  Elapsed = 0.003586 s
inplace:
Executed "v.to_python(a)".  Elapsed = 0.010370 s
Executed "v2 = h.Vector(a)".  Elapsed = 0.010875 s
inplace:
Executed "v2.from_python(a)".  Elapsed = 0.002191 s
Executed "l2 = list(v2)".  Elapsed = 0.070863 s
inplace:
Executed "v.to_python(l2)".  Elapsed = 0.007904 s
Executed "v2 = h.Vector(a[::-1])".  Elapsed = 0.003433 s
Executed "a2 = numpy.array(v2)".  Elapsed = 0.003635 s
test:  ok
testHClass (neuron.tests.test_neuron.NeuronTestCase)
Test subclass of hoc class. ... ok
testHelp (neuron.tests.test_neuron.NeuronTestCase) ... ok
testIterators (neuron.tests.test_neuron.NeuronTestCase)
Test section, segment, mechanism, rangevar iterators. ... ok
testRxDexistence (neuron.tests.test_neuron.NeuronTestCase) ... ok
testSectionArgOrder (neuron.tests.test_neuron.NeuronTestCase)
First optional arg for Section is name (but name="name" is recommended) ... ok
testSectionCell (neuron.tests.test_neuron.NeuronTestCase)
Section.cell() internally referenced as weakref. ... ok
testSectionListIterator (neuron.tests.test_neuron.NeuronTestCase)
As of v8.0, iteration over a SectionList does not change the cas ... ok
test_newobj_err (neuron.tests.test_neuron.NeuronTestCase)
Test deletion of incompletely constructed objects ... NEURON: generate an error
 near line 1
 ob = new NewObj(1, 2)
                      ^
        NewObj[4].execerror("generate a...")
      NewObj[4].init(0, 2)
    NewObj[3].init(1, 2)
  NewObj[2].execute1("ob = new N...", NewObj[2])
and others
ok
testpsection (neuron.tests.test_neuron.NeuronTestCase) ... Syntax:
    .. code-block::
        python


        h.xpanel('name')
        h.xpanel('name', [0-1])
        h.xpanel()
        h.xpanel(x, y)
        h.xpanel(scroll)
        h.xpanel(scroll, x, y)


Description:


    ``h.xpanel("name")`` 


    ``h.xpanel("name", [0-1])`` 
        Title of a new panel. Every 
        button, menu, and value between this and a closing ``xpanel()`` command 
        with no arguments (or placement args) belongs to this panel. 
        If the form is used with a second argument equal to 1, then 
        the panel is laid out horizontally. Otherwise the default is vertically. 


    ``h.xpanel()`` 


    ``h.xpanel(x, y)`` 
        done constructing the panel. so map it to the screen with position 
        optionally specified. 


    ``h.xpanel(scroll)`` 


    ``h.xpanel(scroll, x, y)`` 
        as above but if the first arg is a number, then the value determines 
        whether the panel will be inside a scrollbox. Scroll = 0 means a scrollbox 
        will NOT be used. Scroll = 1 means the panel will be inside a scrollbox. 
        Scroll = -1 is the default value and whether or not a scrollbox is used 
        is determined by the number of panel items in comparison with the 
        value of the panel_scroll property in the nrn.defaults file. 


Skipping because NRN_ENABLE_RX3D=False

#NewObj and #Foo in existence 3 6
after del a #NewObj and #Foo in existence 0 0
ok

----------------------------------------------------------------------
Ran 15 tests in 2.652s

OK
$ if [[ ! "${cmake_args[*]}" =~ "NRN_ENABLE_RX3D=OFF" && ! "${cmake_args[*]}" =~ "NRN_ENABLE_CORENEURON=ON" ]]; then
section_end:1682530394:step_script
section_start:1682530394:archive_cache
Saving cache for successful job
Creating cache mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-ramcdougal-patch-2-1-non_protected...
Runtime platform                                    arch=arm64 os=darwin pid=46820 revision=43b2dc3d version=15.4.0
./ccache: found 7009 matching files and directories 
No URL provided, cache will not be uploaded to shared cache server. Cache will be stored only locally. 
Created cache
section_end:1682530404:archive_cache
section_start:1682530404:cleanup_file_variables
Cleaning up project directory and file based variables
section_end:1682530404:cleanup_file_variables
Job succeeded

spack-setup.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1682529932:resolve_secrets
Resolving secrets
section_end:1682529932:resolve_secrets
section_start:1682529932:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3913506768, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 118457, build ref 2e15478ea7527495aa989eaf5bebdcb6a9ba2a26, job ID 674215
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J674215_PROD_P2160_CP0_C0
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1430361
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M    --job-name=GL_J674215_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --ntasks=1 --jobid=1430361 --cpus-per-task=6 --mem=30750M     
section_end:1682529935:prepare_executor
section_start:1682529935:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n5 via bbpv1.epfl.ch...
section_end:1682529938:prepare_script
section_start:1682529938:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1682529939:get_sources
section_start:1682529939:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then
$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command
$ cat parse_description.py
import os
import re
import requests
pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format(
                        os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'],
                        os.environ['CI_EXTERNAL_PULL_REQUEST_IID']),
                       headers={'Accept': 'application/vnd.github.v3+json'})
pr_body = pr_info.json()["body"]
# match something like NEURON_BRANCH=foo/bar
# special case for SPACK_DEPLOYMENT_SUFFIX=foo/bar
pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE)
def parse_term(m):
  ref_type = m.group(2).lower()
  is_deployment_suffix = ref_type == 'suffix' and m.group(1).lower() == 'spack_deployment'
  if ref_type not in {'branch', 'tag', 'ref'} and not is_deployment_suffix: return
  print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3))
if pr_body is not None:
  for pr_body_line in pr_body.splitlines():
    if not pr_body_line.startswith('CI_BRANCHES:'): continue
    for config_term in pr_body_line[12:].split(','):
      pat.sub(parse_term, config_term)
$ (module load unstable python-dev; python parse_description.py) > input_variables.env
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
$ else
$ cat input_variables.env
$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command
$ set -o allexport
$ . input_variables.env
$ set +o allexport
$ unset MODULEPATH
$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh
$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env
$ echo Preparing to clone Spack into ${PWD}
Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674215
$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then
$ echo Checking out the ${SPACK_BRANCH} of Spack...
Checking out the develop of Spack...
$ module load unstable git
$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack
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$ export SPACK_ROOT=${PWD}/spack
$ export SPACK_RESOLVED_COMMIT=$(cd "${SPACK_ROOT}" && git rev-parse HEAD)
$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"
$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"
$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env
$ echo "SPACK_RESOLVED_COMMIT=${SPACK_RESOLVED_COMMIT}" >> spack_clone_variables.env
$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env
$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457/J674215_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack ${SPACK_EXTRA_FLAGS} configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env
spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED BLUECONFIGS --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=ramcdougal-patch-2 SPACK_RESOLVED_COMMIT=2c2d67c1d8cb0240b3e4b57c1a4f32c688028c7e GITLAB_PIPELINES_BRANCH=main NEURON_COMMIT=2e15478ea7527495aa989eaf5bebdcb6a9ba2a26 NMODL_BRANCH=master LIBSONATA_REPORT_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master BLUECONFIGS_BRANCH=main 
==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=ramcdougal-patch-2
==> SPACK_RESOLVED: ignoring SPACK_RESOLVED_COMMIT=2c2d67c1d8cb0240b3e4b57c1a4f32c688028c7e
==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main
==> SPACK: ignoring SPACK_BRANCH=develop
==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master
==> BLUECONFIGS: ignoring BLUECONFIGS_BRANCH=main
==> nmodl: resolved branch master to f729744ef92891a0417b8298e8a6978f20017f90
==> libsonata-report: resolved branch master to ce20516d4732e2830d06528c90c07a6fbf699316
==> neuron@develop: remove branch/commit/tag
==> neuron@develop: use commit="2e15478ea7527495aa989eaf5bebdcb6a9ba2a26"
==> neuron@develop: add preferred=True
==> nmodl@develop: remove branch/commit/tag
==> nmodl@develop: use commit="f729744ef92891a0417b8298e8a6978f20017f90"
==> nmodl@develop: add preferred=True
==> libsonata-report@develop: remove branch/commit/tag
==> libsonata-report@develop: use commit="ce20516d4732e2830d06528c90c07a6fbf699316"
==> libsonata-report@develop: add preferred=True
$ (cd "${SPACK_ROOT}" && git diff)
diff --git a/bluebrain/repo-bluebrain/packages/libsonata-report/package.py b/bluebrain/repo-bluebrain/packages/libsonata-report/package.py
index 63493633..4df2d18f 100644
--- a/bluebrain/repo-bluebrain/packages/libsonata-report/package.py
+++ b/bluebrain/repo-bluebrain/packages/libsonata-report/package.py
@@ -17,7 +17,7 @@ class LibsonataReport(CMakePackage):
     homepage = "https://github.com/BlueBrain/libsonatareport"
     git = "https://github.com/BlueBrain/libsonatareport.git"
 
-    version("develop", branch="master", submodules=False, get_full_repo=True)
+    version('develop', preferred=True, commit='ce20516d4732e2830d06528c90c07a6fbf699316', submodules=False, get_full_repo=True) # old: branch="master"
     version("1.2", tag="1.2", submodules=False)
     version("1.1.1", tag="1.1.1", submodules=False)
     version("1.1", tag="1.1", submodules=False)
diff --git a/bluebrain/repo-bluebrain/packages/nmodl/package.py b/bluebrain/repo-bluebrain/packages/nmodl/package.py
index 68fcf3ba..297daf3f 100644
--- a/bluebrain/repo-bluebrain/packages/nmodl/package.py
+++ b/bluebrain/repo-bluebrain/packages/nmodl/package.py
@@ -13,7 +13,7 @@ class Nmodl(CMakePackage):
     url = "https://github.com/BlueBrain/nmodl.git"
     git = "https://github.com/BlueBrain/nmodl.git"
 
-    version("develop", branch="master", submodules=True)
+    version('develop', preferred=True, commit='f729744ef92891a0417b8298e8a6978f20017f90', submodules=True) # old: branch="master"
     version("llvm", branch="llvm", submodules=True)
     version("0.5.c", commit="c3b0736")
     version("0.5.b", commit="243453d")
diff --git a/bluebrain/repo-patches/packages/neuron/package.py b/bluebrain/repo-patches/packages/neuron/package.py
index 6f9b8f25..1f9d4ccf 100644
--- a/bluebrain/repo-patches/packages/neuron/package.py
+++ b/bluebrain/repo-patches/packages/neuron/package.py
@@ -30,7 +30,7 @@ class Neuron(CMakePackage):
     # Patch for recent CMake versions that don't identify NVHPC as PGI
     patch("patch-v800-cmake-nvhpc.patch", when="@8.0.0%nvhpc^cmake@3.20:")
 
-    version("develop", branch="master")
+    version('develop', preferred=True, commit='2e15478ea7527495aa989eaf5bebdcb6a9ba2a26') # old: branch="master"
     version("9.0.a5", commit="522c866")
     version("9.0.a4", commit="de2c927")
     version("9.0.a3", commit="afce1ef")
$ cat commit-mapping.env
NEURON_COMMIT=2e15478ea7527495aa989eaf5bebdcb6a9ba2a26
NMODL_COMMIT=f729744ef92891a0417b8298e8a6978f20017f90
LIBSONATA_REPORT_COMMIT=ce20516d4732e2830d06528c90c07a6fbf699316
$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env
$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env
$ cat commit-mapping.env >> spack_clone_variables.env
$ spack ${SPACK_EXTRA_FLAGS} spec -IL ninja
==> Warning: Expected user 904556 to own /nvme/bbpcihpcproj12, but it is owned by 0
==> Bootstrapping clingo from pre-built binaries
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-prqkzynv2nwko5mktitebgkeumuxkveu.spec.json
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-prqkzynv2nwko5mktitebgkeumuxkveu.spack
==> Installing "clingo-bootstrap@spack%gcc@10.2.1~docs~ipo+python+static_libstdcpp build_type=Release arch=linux-centos7-x86_64" from a buildcache
Input spec
--------------------------------
 -   ninja

Concretized
--------------------------------
[^]  zk4skoxmkt7do2mk5lgnesas7ol3hhgg  ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake

$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env
$ spack ${SPACK_EXTRA_FLAGS} config --scope site add "config:ccache:true"
$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env
$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> commit-mapping.env
$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> spack_clone_variables.env
section_end:1682530026:step_script
section_start:1682530026:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=249260 revision=58ba2b95 version=14.2.0
commit-mapping.env: found 1 matching files and directories 
input_variables.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=674215 responseStatus=201 Created token=64_sRiCL
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=249292 revision=58ba2b95 version=14.2.0
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=674215 responseStatus=201 Created token=64_sRiCL
section_end:1682530028:upload_artifacts_on_success
section_start:1682530028:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1682530029:cleanup_file_variables
Job succeeded

test-neuron-mod2c-intel-shared.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1682531321:resolve_secrets
Resolving secrets
section_end:1682531321:resolve_secrets
section_start:1682531321:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1346955384, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 118457, build ref 2e15478ea7527495aa989eaf5bebdcb6a9ba2a26, job ID 674226
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J674226_PROD_P2160_CP1_C2
Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1430471
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G    --job-name=GL_J674226_PROD_P2160_CP1_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --ntasks=16 --jobid=1430471 --cpus-per-task=1 --mem=76G     
section_end:1682531323:prepare_executor
section_start:1682531323:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n5 via bbpv1.epfl.ch...
section_end:1682531328:prepare_script
section_start:1682531328:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1682531331:get_sources
section_start:1682531331:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:neuron:mod2c:intel:shared (674218)...
Runtime platform                                    arch=amd64 os=linux pid=286366 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=674218 responseStatus=200 OK token=64_Hq5CP
section_end:1682531333:download_artifacts
section_start:1682531333:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ cd ${SPACK_BUILD_DIR}
$ export BOOST_TEST_COLOR_OUTPUT=no
$ i_am_a_failure=0
$ spack ${SPACK_EXTRA_FLAGS} build-env ${SPACK_FULL_SPEC} -- ctest --no-tests=error --output-on-failure -T Test || i_am_a_failure=1
   Site: r1i4n5
   Build name: Linux-icpc
Create new tag: 20230426-1750 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674218/spack-build/spack-stage-neuron-develop-xyehqj5ncmcdmgrzxmfdvjbsmzwir57u/spack-build-xyehqj5
        Start 203: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start 211: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
        Start 217: testcorenrn_conc::coreneuron_cpu_offline::preparation
        Start 223: testcorenrn_deriv::coreneuron_cpu_offline::preparation
        Start 229: testcorenrn_gf::coreneuron_cpu_offline::preparation
        Start 235: testcorenrn_kin::coreneuron_cpu_offline::preparation
        Start 240: testcorenrn_patstim::coreneuron_cpu_offline::preparation
        Start 246: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
        Start 252: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
  1/277 Test #211: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ..................   Passed    3.13 sec
        Start 122: pyinit::nrniv_py3.10_python_check_sys_path::preparation
  2/277 Test #217: testcorenrn_conc::coreneuron_cpu_offline::preparation ....................   Passed    3.78 sec
        Start 124: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation
  3/277 Test #122: pyinit::nrniv_py3.10_python_check_sys_path::preparation ..................   Passed    0.92 sec
        Start 126: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation
  4/277 Test #223: testcorenrn_deriv::coreneuron_cpu_offline::preparation ...................   Passed    4.17 sec
        Start 128: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation
  5/277 Test #235: testcorenrn_kin::coreneuron_cpu_offline::preparation .....................   Passed    4.31 sec
        Start 130: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation
  6/277 Test #124: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ...............   Passed    0.92 sec
        Start 132: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation
  7/277 Test #229: testcorenrn_gf::coreneuron_cpu_offline::preparation ......................   Passed    4.81 sec
        Start 258: testcorenrn_watch::coreneuron_cpu_offline::preparation
  8/277 Test #126: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................   Passed    0.92 sec
        Start 134: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation
  9/277 Test #240: testcorenrn_patstim::coreneuron_cpu_offline::preparation .................   Passed    5.00 sec
        Start 136: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation
        Start 138: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation
 10/277 Test #128: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation .............   Passed    0.86 sec
        Start 140: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation
 11/277 Test #246: testcorenrn_vecplay::coreneuron_cpu_offline::preparation .................   Passed    5.04 sec
        Start 142: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation
        Start 144: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation
 12/277 Test #130: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ...........   Passed    0.92 sec
        Start 146: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation
 13/277 Test #252: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................   Passed    5.70 sec
        Start 274: olfactory-bulb-3d::neuron::preparation
 14/277 Test #132: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........   Passed    1.03 sec
        Start 148: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation
 15/277 Test #274: olfactory-bulb-3d::neuron::preparation ...................................   Passed    0.19 sec
        Start 276: olfactory-bulb-3d::coreneuron_cpu_online::preparation
 16/277 Test #134: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ...........   Passed    1.06 sec
        Start 150: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation
 17/277 Test #276: olfactory-bulb-3d::coreneuron_cpu_online::preparation ....................   Passed    0.17 sec
        Start 152: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation
        Start 158: pyinit::nrniv_pydef_python_check_sys_path::preparation
        Start 160: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
        Start 162: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
 18/277 Test #138: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ......   Passed    1.10 sec
        Start 164: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
 19/277 Test #140: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ...   Passed    1.09 sec
        Start 166: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
 20/277 Test #144: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation ....   Passed    1.07 sec
        Start 168: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
 21/277 Test #136: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........   Passed    1.13 sec
        Start 170: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
 22/277 Test #142: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation .......   Passed    1.10 sec
        Start 172: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
 23/277 Test #203: external_ringtest::coreneuron_cpu_mpi_offline::preparation ...............   Passed    6.38 sec
        Start 174: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
        Start 176: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
 24/277 Test #146: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........   Passed    1.15 sec
        Start 178: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
 25/277 Test #148: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation .....   Passed    1.33 sec
        Start 180: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
 26/277 Test #152: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation ....   Passed    1.14 sec
        Start 182: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
 27/277 Test #150: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation .......   Passed    1.33 sec
        Start 184: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
 28/277 Test #158: pyinit::nrniv_pydef_python_check_sys_path::preparation ...................   Passed    1.32 sec
        Start 186: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
 29/277 Test #166: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............   Passed    1.33 sec
        Start 188: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
 30/277 Test #160: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................   Passed    1.37 sec
        Start 196: external_ringtest::neuron
 31/277 Test #164: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation ..............   Passed    1.37 sec
        Start 207: testcorenrn_bbcore::neuron
 32/277 Test #168: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation .........   Passed    1.37 sec
        Start 208: testcorenrn_bbcore::coreneuron_cpu_online
 33/277 Test #172: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation .........   Passed    1.36 sec
        Start 209: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 34/277 Test #162: pyinit::nrniv_pydef_python_check_sys_prefix::preparation .................   Passed    1.47 sec
        Start 210: testcorenrn_bbcore::coreneuron_cpu_offline
 35/277 Test #170: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............   Passed    1.50 sec
        Start 213: testcorenrn_conc::neuron
 36/277 Test #174: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation .......   Passed    1.40 sec
        Start 214: testcorenrn_conc::coreneuron_cpu_online
 37/277 Test #176: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation ....   Passed    1.40 sec
        Start 215: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 38/277 Test #178: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........   Passed    1.39 sec
        Start 216: testcorenrn_conc::coreneuron_cpu_offline
 39/277 Test #180: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation .....   Passed    1.39 sec
        Start 219: testcorenrn_deriv::neuron
 40/277 Test #182: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation .........   Passed    1.37 sec
        Start 220: testcorenrn_deriv::coreneuron_cpu_online
 41/277 Test #184: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ......   Passed    1.33 sec
        Start 221: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 42/277 Test #186: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........   Passed    1.29 sec
        Start 222: testcorenrn_deriv::coreneuron_cpu_offline
 43/277 Test #188: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation .....   Passed    1.33 sec
        Start 231: testcorenrn_kin::neuron
 44/277 Test #258: testcorenrn_watch::coreneuron_cpu_offline::preparation ...................   Passed    5.87 sec
        Start 197: external_ringtest::neuron_mpi
 45/277 Test #210: testcorenrn_bbcore::coreneuron_cpu_offline ...............................   Passed    3.55 sec
        Start 232: testcorenrn_kin::coreneuron_cpu_online
 46/277 Test #216: testcorenrn_conc::coreneuron_cpu_offline .................................   Passed    3.61 sec
        Start 233: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 47/277 Test #222: testcorenrn_deriv::coreneuron_cpu_offline ................................   Passed    3.67 sec
        Start 234: testcorenrn_kin::coreneuron_cpu_offline
 48/277 Test #207: testcorenrn_bbcore::neuron ...............................................   Passed    5.97 sec
        Start 265: channel_benchmark_hippo::neuron
 49/277 Test #196: external_ringtest::neuron ................................................   Passed    6.21 sec
        Start 266: channel_benchmark_hippo::coreneuron_cpu_online
 50/277 Test #213: testcorenrn_conc::neuron .................................................   Passed    6.09 sec
        Start 267: channel_benchmark_hippo::coreneuron_cpu_filemode
 51/277 Test #219: testcorenrn_deriv::neuron ................................................   Passed    5.91 sec
        Start 269: channel_benchmark_sscx::neuron
 52/277 Test #231: testcorenrn_kin::neuron ..................................................   Passed    5.96 sec
        Start 270: channel_benchmark_sscx::coreneuron_cpu_online
 53/277 Test #234: testcorenrn_kin::coreneuron_cpu_offline ..................................   Passed    3.62 sec
        Start 271: channel_benchmark_sscx::coreneuron_cpu_filemode
 54/277 Test #214: testcorenrn_conc::coreneuron_cpu_online ..................................   Passed    8.34 sec
        Start   1: unit_tests::testneuron
 55/277 Test #209: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ...............   Passed    8.62 sec
        Start   2: ringtest
 56/277 Test #208: testcorenrn_bbcore::coreneuron_cpu_online ................................   Passed    8.72 sec
        Start   3: connect_dend
 57/277 Test #215: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate .................   Passed    8.64 sec
        Start   4: mpi_init::nrniv_mpiopt
 58/277 Test #220: testcorenrn_deriv::coreneuron_cpu_online .................................   Passed    8.64 sec
        Start   5: mpi_init::nrniv_nrnmpi_init
 59/277 Test #221: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................   Passed    8.69 sec
        Start   6: mpi_init::python_nrnmpi_init
 60/277 Test   #1: unit_tests::testneuron ...................................................   Passed    1.71 sec
        Start   7: mpi_init::python_mpienv
 61/277 Test   #4: mpi_init::nrniv_mpiopt ...................................................   Passed    1.92 sec
        Start   8: mpi_init::nrniv_mpiexec_mpiopt
 62/277 Test   #5: mpi_init::nrniv_nrnmpi_init ..............................................   Passed    1.93 sec
        Start   9: mpi_init::nrniv_mpiexec_nrnmpi_init
 63/277 Test   #2: ringtest .................................................................   Passed    3.12 sec
        Start  10: mpi_init::python_mpiexec_nrnmpi_init
 64/277 Test   #3: connect_dend .............................................................   Passed    3.25 sec
        Start  11: mpi_init::python_mpiexec_mpienv
 65/277 Test #232: testcorenrn_kin::coreneuron_cpu_online ...................................   Passed    8.67 sec
        Start  12: pynrn::basic_tests_py3.10
 66/277 Test #233: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ..................   Passed    8.77 sec
        Start  13: coverage_tests::cover_tests
 67/277 Test #197: external_ringtest::neuron_mpi ............................................   Passed    9.93 sec
        Start 198: external_ringtest::neuron_mpi_python
 68/277 Test   #6: mpi_init::python_nrnmpi_init .............................................   Passed    4.48 sec
        Start  14: example_nmodl::ca_ap_hoc
 69/277 Test   #7: mpi_init::python_mpienv ..................................................   Passed    4.24 sec
        Start  15: example_nmodl::cabpump_hoc
 70/277 Test   #8: mpi_init::nrniv_mpiexec_mpiopt ...........................................   Passed    4.07 sec
        Start  16: example_nmodl::cachan_hoc
 71/277 Test   #9: mpi_init::nrniv_mpiexec_nrnmpi_init ......................................   Passed    3.86 sec
        Start  17: example_nmodl::cadif_hoc
 72/277 Test  #14: example_nmodl::ca_ap_hoc .................................................   Passed    1.87 sec
        Start  18: example_nmodl::cadifusl_hoc
 73/277 Test  #16: example_nmodl::cachan_hoc ................................................   Passed    1.88 sec
        Start  19: example_nmodl::cadifusl1_hoc
 74/277 Test  #15: example_nmodl::cabpump_hoc ...............................................   Passed    3.12 sec
        Start  20: example_nmodl::cadifusl2_hoc
 75/277 Test  #18: example_nmodl::cadifusl_hoc ..............................................   Passed    1.71 sec
        Start  21: example_nmodl::cagk_hoc
 76/277 Test  #17: example_nmodl::cadif_hoc .................................................   Passed    2.61 sec
        Start  22: example_nmodl::capmp_hoc
 77/277 Test  #19: example_nmodl::cadifusl1_hoc .............................................   Passed    1.60 sec
        Start  23: example_nmodl::cv_hoc
 78/277 Test  #20: example_nmodl::cadifusl2_hoc .............................................   Passed    1.35 sec
        Start  24: example_nmodl::fh_hoc
 79/277 Test  #21: example_nmodl::cagk_hoc ..................................................   Passed    1.14 sec
        Start  25: example_nmodl::fit1_hoc
 80/277 Test  #10: mpi_init::python_mpiexec_nrnmpi_init .....................................   Passed    7.36 sec
        Start  26: example_nmodl::gap_hoc
 81/277 Test  #22: example_nmodl::capmp_hoc .................................................   Passed    1.08 sec
        Start  27: example_nmodl::hh1_hoc
 82/277 Test  #11: mpi_init::python_mpiexec_mpienv ..........................................   Passed    7.39 sec
        Start  28: example_nmodl::hhvect_hoc
 83/277 Test  #23: example_nmodl::cv_hoc ....................................................   Passed    1.00 sec
        Start  29: example_nmodl::nacum_hoc
 84/277 Test  #24: example_nmodl::fh_hoc ....................................................   Passed    0.74 sec
        Start  30: example_nmodl::nadifl1_hoc
 85/277 Test  #25: example_nmodl::fit1_hoc ..................................................   Passed    0.74 sec
        Start  31: example_nmodl::nadifl2_hoc
 86/277 Test  #27: example_nmodl::hh1_hoc ...................................................   Passed    0.67 sec
        Start  32: example_nmodl::nadifl3_hoc
 87/277 Test  #28: example_nmodl::hhvect_hoc ................................................   Passed    0.66 sec
        Start  33: example_nmodl::nadifl4_hoc
 88/277 Test  #26: example_nmodl::gap_hoc ...................................................   Passed    0.91 sec
        Start  34: example_nmodl::obj_ex_hoc
 89/277 Test  #29: example_nmodl::nacum_hoc .................................................   Passed    0.80 sec
        Start  35: example_nmodl::order_hoc
 90/277 Test  #30: example_nmodl::nadifl1_hoc ...............................................   Passed    0.79 sec
        Start  36: example_nmodl::passiv_hoc
 91/277 Test  #34: example_nmodl::obj_ex_hoc ................................................   Passed    1.17 sec
        Start  37: example_nmodl::stim1_hoc
 92/277 Test  #32: example_nmodl::nadifl3_hoc ...............................................   Passed    1.54 sec
        Start  38: example_nmodl::syn1_hoc
 93/277 Test  #31: example_nmodl::nadifl2_hoc ...............................................   Passed    1.85 sec
        Start  39: example_nmodl::synpre_hoc
 94/277 Test  #33: example_nmodl::nadifl4_hoc ...............................................   Passed    1.95 sec
        Start  40: example_nmodl::tstextrn_hoc
 95/277 Test  #37: example_nmodl::stim1_hoc .................................................   Passed    0.83 sec
        Start  41: example_nmodl::tstpnt1_hoc
 96/277 Test  #36: example_nmodl::passiv_hoc ................................................   Passed    1.49 sec
        Start  42: example_nmodl::tstpnt2_hoc
 97/277 Test #198: external_ringtest::neuron_mpi_python .....................................   Passed    9.11 sec
        Start 199: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
 98/277 Test  #35: example_nmodl::order_hoc .................................................   Passed    2.31 sec
        Start  43: example_nmodl::tstvec_hoc
 99/277 Test  #38: example_nmodl::syn1_hoc ..................................................   Passed    1.23 sec
        Start  44: example_nmodl::cagkftab_py
100/277 Test  #39: example_nmodl::synpre_hoc ................................................   Passed    1.11 sec
        Start  45: example_nmodl::expsynspine_py
101/277 Test  #41: example_nmodl::tstpnt1_hoc ...............................................   Passed    0.93 sec
        Start  46: example_nmodl::nonlin_py
102/277 Test  #40: example_nmodl::tstextrn_hoc ..............................................   Passed    1.04 sec
        Start  47: example_nmodl::tstpnt1_py
103/277 Test  #42: example_nmodl::tstpnt2_hoc ...............................................   Passed    1.28 sec
        Start  48: example_nmodl::tstpnt2_py
104/277 Test  #43: example_nmodl::tstvec_hoc ................................................   Passed    1.02 sec
        Start  49: example_nmodl::vlag_py
105/277 Test  #45: example_nmodl::expsynspine_py ............................................   Passed    3.59 sec
        Start  50: hoctests::test_loadbal_hoc
106/277 Test  #47: example_nmodl::tstpnt1_py ................................................   Passed    3.40 sec
        Start  51: hoctests::perf1_hoc
107/277 Test  #46: example_nmodl::nonlin_py .................................................   Passed    3.85 sec
        Start  52: hoctests::test1_hoc
108/277 Test  #49: example_nmodl::vlag_py ...................................................   Passed    3.56 sec
        Start  53: hoctests::test2_hoc
109/277 Test  #48: example_nmodl::tstpnt2_py ................................................   Passed    3.85 sec
        Start  54: hoctests::test3_hoc
110/277 Test  #50: hoctests::test_loadbal_hoc ...............................................   Passed    1.05 sec
        Start  55: hoctests::test4_hoc
111/277 Test  #51: hoctests::perf1_hoc ......................................................   Passed    1.04 sec
        Start  56: hoctests::test5_hoc
112/277 Test  #44: example_nmodl::cagkftab_py ...............................................   Passed    4.97 sec
        Start  57: hoctests::test6_hoc
113/277 Test  #52: hoctests::test1_hoc ......................................................   Passed    0.89 sec
        Start  58: hoctests::test7_hoc
114/277 Test  #53: hoctests::test2_hoc ......................................................   Passed    0.65 sec
        Start  59: hoctests::test8_hoc
115/277 Test  #54: hoctests::test3_hoc ......................................................   Passed    0.74 sec
        Start  60: hoctests::test9_hoc
116/277 Test  #56: hoctests::test5_hoc ......................................................   Passed    0.80 sec
        Start  61: hoctests::test_kschan_py
117/277 Test  #55: hoctests::test4_hoc ......................................................   Passed    0.95 sec
        Start  62: hoctests::test_neurondemo_py
118/277 Test  #58: hoctests::test7_hoc ......................................................   Passed    0.78 sec
        Start  63: hoctests::test_nrniv-launch_py
119/277 Test  #57: hoctests::test6_hoc ......................................................   Passed    0.84 sec
        Start  64: hoctests::test_shape_py
120/277 Test  #59: hoctests::test8_hoc ......................................................   Passed    0.90 sec
        Start  65: hoctests::test1_py
121/277 Test  #60: hoctests::test9_hoc ......................................................   Passed    1.08 sec
        Start  66: hoctests::test2_py
122/277 Test  #13: coverage_tests::cover_tests ..............................................   Passed   16.56 sec
        Start  67: hoctests::test9_py
123/277 Test  #63: hoctests::test_nrniv-launch_py ...........................................   Passed    2.05 sec
        Start  73: coreneuron_standalone::test_nrn_corenrn_standalone
124/277 Test  #61: hoctests::test_kschan_py .................................................   Passed    3.16 sec
        Start  74: nmodl_tests::test_table
125/277 Test  #62: hoctests::test_neurondemo_py .............................................   Passed    3.26 sec
        Start  75: nmodl_tests::test_disc
126/277 Test  #65: hoctests::test1_py .......................................................   Passed    3.45 sec
        Start  76: nmodl_tests::test_function_table
127/277 Test  #66: hoctests::test2_py .......................................................   Passed    3.37 sec
        Start  77: nmodl_tests::test_kinetic
128/277 Test  #64: hoctests::test_shape_py ..................................................   Passed    3.95 sec
        Start  78: coreneuron_modtests::version_macros
129/277 Test  #67: hoctests::test9_py .......................................................   Passed    3.48 sec
        Start  79: coreneuron_modtests::fornetcon_py_cpu
130/277 Test #266: channel_benchmark_hippo::coreneuron_cpu_online ...........................   Passed   31.32 sec
        Start  80: coreneuron_modtests::direct_py_cpu
131/277 Test #270: channel_benchmark_sscx::coreneuron_cpu_online ............................   Passed   30.32 sec
        Start  81: coreneuron_modtests::direct_hoc_cpu
132/277 Test #269: channel_benchmark_sscx::neuron ...........................................   Passed   30.72 sec
        Start  82: coreneuron_modtests::spikes_py_cpu
133/277 Test #267: channel_benchmark_hippo::coreneuron_cpu_filemode .........................   Passed   31.69 sec
        Start  83: coreneuron_modtests::spikes_file_mode_py_cpu
134/277 Test #265: channel_benchmark_hippo::neuron ..........................................   Passed   32.55 sec
        Start  84: coreneuron_modtests::fast_imem_py_cpu
135/277 Test #271: channel_benchmark_sscx::coreneuron_cpu_filemode ..........................   Passed   30.17 sec
        Start  85: coreneuron_modtests::datareturn_py_cpu
136/277 Test #199: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................   Passed   18.63 sec
        Start 200: external_ringtest::coreneuron_cpu_mpi
137/277 Test  #81: coreneuron_modtests::direct_hoc_cpu ......................................   Passed    5.81 sec
        Start  86: coreneuron_modtests::test_units_py_cpu
138/277 Test  #73: coreneuron_standalone::test_nrn_corenrn_standalone .......................   Passed   18.07 sec
        Start  87: coreneuron_modtests::test_netmove_py_cpu
139/277 Test #200: external_ringtest::coreneuron_cpu_mpi ....................................   Passed    9.38 sec
        Start 201: external_ringtest::coreneuron_cpu_mpi_python
140/277 Test  #74: nmodl_tests::test_table ..................................................   Passed   19.59 sec
        Start  88: coreneuron_modtests::test_pointer_py_cpu
141/277 Test  #75: nmodl_tests::test_disc ...................................................   Passed   19.81 sec
        Start  89: coreneuron_modtests::test_watchrange_py_cpu
142/277 Test  #76: nmodl_tests::test_function_table .........................................   Passed   19.67 sec
        Start  90: coreneuron_modtests::test_psolve_py_cpu
143/277 Test  #79: coreneuron_modtests::fornetcon_py_cpu ....................................   Passed   19.51 sec
        Start  91: coreneuron_modtests::test_ba_py_cpu
144/277 Test  #77: nmodl_tests::test_kinetic ................................................   Passed   19.89 sec
        Start  92: coreneuron_modtests::test_natrans_py_cpu
145/277 Test  #78: coreneuron_modtests::version_macros ......................................   Passed   20.50 sec
        Start  96: nmodl_tests_coreneuron::test_table_coreneuron_cpu
146/277 Test  #12: pynrn::basic_tests_py3.10 ................................................   Passed   41.23 sec
        Start  97: nmodl_tests_coreneuron::test_disc_coreneuron_cpu
147/277 Test  #80: coreneuron_modtests::direct_py_cpu .......................................   Passed   22.90 sec
        Start  98: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu
148/277 Test  #82: coreneuron_modtests::spikes_py_cpu .......................................   Passed   22.98 sec
        Start  99: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu
149/277 Test #201: external_ringtest::coreneuron_cpu_mpi_python .............................   Passed   10.67 sec
        Start 202: external_ringtest::coreneuron_cpu_mpi_offline
150/277 Test  #83: coreneuron_modtests::spikes_file_mode_py_cpu .............................   Passed   23.28 sec
        Start 100: modlunit_unitstest
151/277 Test #100: modlunit_unitstest .......................................................   Passed    0.47 sec
        Start 101: modlunit_hh
152/277 Test  #85: coreneuron_modtests::datareturn_py_cpu ...................................   Passed   23.10 sec
        Start 102: modlunit_stim
153/277 Test #101: modlunit_hh ..............................................................   Passed    0.42 sec
        Start 103: modlunit_pattern
154/277 Test  #84: coreneuron_modtests::fast_imem_py_cpu ....................................   Passed   23.67 sec
        Start 104: pyinit::nrniv_script.py
155/277 Test #102: modlunit_stim ............................................................   Passed    0.51 sec
        Start 105: pyinit::nrniv_script.py_error
156/277 Test #103: modlunit_pattern .........................................................   Passed    0.55 sec
        Start 106: pyinit::nrniv_two_scripts.py
157/277 Test #105: pyinit::nrniv_script.py_error ............................................   Passed    2.03 sec
        Start 107: pyinit::nrniv_two_scripts.py_error_check_code
158/277 Test #104: pyinit::nrniv_script.py ..................................................   Passed    2.32 sec
        Start 108: pyinit::nrniv_two_scripts.py_error_check_output
159/277 Test #106: pyinit::nrniv_two_scripts.py .............................................   Passed    2.31 sec
        Start 109: pyinit::nrniv_python_command
160/277 Test #107: pyinit::nrniv_two_scripts.py_error_check_code ............................   Passed    1.63 sec
        Start 110: pyinit::nrniv_python_command_error
161/277 Test #202: external_ringtest::coreneuron_cpu_mpi_offline ............................   Passed    5.09 sec
        Start 225: testcorenrn_gf::neuron
162/277 Test #108: pyinit::nrniv_two_scripts.py_error_check_output ..........................   Passed    1.67 sec
        Start 111: pyinit::nrniv_python_script.py
163/277 Test #109: pyinit::nrniv_python_command .............................................   Passed    1.90 sec
        Start 112: pyinit::nrniv_python_script.py_error
164/277 Test  #86: coreneuron_modtests::test_units_py_cpu ...................................   Passed   24.07 sec
        Start 113: pyinit::nrniv_python_command_twice
165/277 Test #110: pyinit::nrniv_python_command_error .......................................   Passed    1.97 sec
        Start 114: pyinit::nrniv_python_script.py_twice
166/277 Test #111: pyinit::nrniv_python_script.py ...........................................   Passed    1.88 sec
        Start 115: pyinit::nrniv_python_command_args
167/277 Test #112: pyinit::nrniv_python_script.py_error .....................................   Passed    1.92 sec
        Start 116: pyinit::nrniv_python_script.py_args
168/277 Test #113: pyinit::nrniv_python_command_twice .......................................   Passed    1.91 sec
        Start 117: pyinit::nrniv_nopython_PythonObject
169/277 Test #114: pyinit::nrniv_python_script.py_twice .....................................   Passed    1.99 sec
        Start 118: pyinit::nrniv_nopython_PythonObject_pyexe
170/277 Test #115: pyinit::nrniv_python_command_args ........................................   Passed    2.05 sec
        Start 119: pyinit::nrniv_nopython_PythonObject_pyenv
171/277 Test #116: pyinit::nrniv_python_script.py_args ......................................   Passed    1.89 sec
        Start 120: pyinit::nrniv_py3.10_python_command_version_check
172/277 Test #117: pyinit::nrniv_nopython_PythonObject ......................................   Passed    1.45 sec
        Start 121: pyinit::nrniv_py3.10_python_check_sys_path
173/277 Test #118: pyinit::nrniv_nopython_PythonObject_pyexe ................................   Passed    1.46 sec
        Start 123: pyinit::nrniv_py3.10_nrnpython_check_sys_path
174/277 Test #119: pyinit::nrniv_nopython_PythonObject_pyenv ................................   Passed    1.46 sec
        Start 125: pyinit::nrniv_py3.10_python_check_sys_prefix
175/277 Test #120: pyinit::nrniv_py3.10_python_command_version_check ........................   Passed    1.72 sec
        Start 127: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix
176/277 Test #225: testcorenrn_gf::neuron ...................................................   Passed    6.99 sec
        Start 226: testcorenrn_gf::coreneuron_cpu_online
177/277 Test #121: pyinit::nrniv_py3.10_python_check_sys_path ...............................   Passed    2.25 sec
        Start 129: pyinit::nrniv_py3.10_python_check_sys_exec_prefix
178/277 Test  #87: coreneuron_modtests::test_netmove_py_cpu .................................   Passed   24.76 sec
        Start 131: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix
179/277 Test #123: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................   Passed    2.26 sec
        Start 133: pyinit::nrniv_py3.10_python_check_sys_base_prefix
180/277 Test #125: pyinit::nrniv_py3.10_python_check_sys_prefix .............................   Passed    2.31 sec
        Start 135: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix
181/277 Test #127: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix ..........................   Passed    2.26 sec
        Start 137: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix
182/277 Test #129: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................   Passed    2.25 sec
        Start 139: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix
183/277 Test #131: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix .....................   Passed    2.25 sec
        Start 141: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding
184/277 Test #133: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................   Passed    2.33 sec
        Start 143: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding
185/277 Test  #91: coreneuron_modtests::test_ba_py_cpu ......................................   Passed   23.87 sec
        Start 145: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding
186/277 Test #135: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix .....................   Passed    2.35 sec
        Start 147: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding
187/277 Test  #89: coreneuron_modtests::test_watchrange_py_cpu ..............................   Passed   24.85 sec
        Start 149: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding
188/277 Test  #92: coreneuron_modtests::test_natrans_py_cpu .................................   Passed   24.14 sec
        Start 151: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding
189/277 Test  #90: coreneuron_modtests::test_psolve_py_cpu ..................................   Passed   24.97 sec
        Start 153: pyinit::nrniv_py3.10_python_command_import_neuron
190/277 Test #137: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ...................   Passed    2.33 sec
        Start 154: pyinit::py3.10_command_import_neuron
191/277 Test  #96: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................   Passed   24.53 sec
        Start 155: pyinit::nrniv_py3.10_hoc_command_nrnpython
192/277 Test #139: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................   Passed    2.33 sec
        Start 156: pyinit::nrniv_pydef_python_command_version_check
193/277 Test #141: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding ....................   Passed    2.37 sec
        Start 157: pyinit::nrniv_pydef_python_check_sys_path
194/277 Test  #97: nmodl_tests_coreneuron::test_disc_coreneuron_cpu .........................   Passed   24.57 sec
        Start 159: pyinit::nrniv_pydef_nrnpython_check_sys_path
195/277 Test #143: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding .................   Passed    2.40 sec
        Start 161: pyinit::nrniv_pydef_python_check_sys_prefix
196/277 Test #145: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding .....................   Passed    2.38 sec
        Start 163: pyinit::nrniv_pydef_nrnpython_check_sys_prefix
197/277 Test #147: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding ..................   Passed    2.41 sec
        Start 165: pyinit::nrniv_pydef_python_check_sys_exec_prefix
198/277 Test #149: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding ....................   Passed    2.50 sec
        Start 167: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix
199/277 Test #151: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding .................   Passed    2.46 sec
        Start 169: pyinit::nrniv_pydef_python_check_sys_base_prefix
200/277 Test #155: pyinit::nrniv_py3.10_hoc_command_nrnpython ...............................   Passed    1.93 sec
        Start 171: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix
201/277 Test #156: pyinit::nrniv_pydef_python_command_version_check .........................   Passed    2.08 sec
        Start 173: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix
202/277 Test #157: pyinit::nrniv_pydef_python_check_sys_path ................................   Passed    2.30 sec
        Start 175: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix
203/277 Test #159: pyinit::nrniv_pydef_nrnpython_check_sys_path .............................   Passed    2.54 sec
        Start 177: pyinit::nrniv_pydef_python_check_sys_stderr.encoding
204/277 Test #163: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ...........................   Passed    2.35 sec
        Start 179: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding
205/277 Test #161: pyinit::nrniv_pydef_python_check_sys_prefix ..............................   Passed    2.52 sec
        Start 181: pyinit::nrniv_pydef_python_check_sys_stdin.encoding
206/277 Test #165: pyinit::nrniv_pydef_python_check_sys_exec_prefix .........................   Passed    2.53 sec
        Start 183: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding
207/277 Test #169: pyinit::nrniv_pydef_python_check_sys_base_prefix .........................   Passed    2.40 sec
        Start 185: pyinit::nrniv_pydef_python_check_sys_stdout.encoding
208/277 Test #167: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ......................   Passed    2.52 sec
        Start 187: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding
209/277 Test #171: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ......................   Passed    2.46 sec
        Start 189: pyinit::nrniv_pydef_python_command_import_neuron
210/277 Test #173: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix ....................   Passed    2.47 sec
        Start 190: pyinit::pydef_command_import_neuron
211/277 Test #154: pyinit::py3.10_command_import_neuron .....................................   Passed    5.23 sec
        Start 191: pyinit::nrniv_pydef_hoc_command_nrnpython
212/277 Test  #88: coreneuron_modtests::test_pointer_py_cpu .................................   Passed   31.44 sec
        Start 192: external_nrntest
213/277 Test #153: pyinit::nrniv_py3.10_python_command_import_neuron ........................   Passed    5.73 sec
        Start 212: testcorenrn_bbcore::compare_results
214/277 Test #175: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix .................   Passed    2.32 sec
        Start 218: testcorenrn_conc::compare_results
215/277 Test #177: pyinit::nrniv_pydef_python_check_sys_stderr.encoding .....................   Passed    2.44 sec
        Start 224: testcorenrn_deriv::compare_results
216/277 Test #179: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding ..................   Passed    2.35 sec
        Start 236: testcorenrn_kin::compare_results
217/277 Test #226: testcorenrn_gf::coreneuron_cpu_online ....................................   Passed   10.23 sec
        Start 227: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
218/277 Test #181: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ......................   Passed    2.38 sec
        Start 268: channel_benchmark_hippo::compare_results
219/277 Test #183: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ...................   Passed    2.30 sec
        Start 272: channel_benchmark_sscx::compare_results
220/277 Test #185: pyinit::nrniv_pydef_python_check_sys_stdout.encoding .....................   Passed    2.31 sec
221/277 Test #187: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding ..................   Passed    2.46 sec
        Start 228: testcorenrn_gf::coreneuron_cpu_offline
222/277 Test #212: testcorenrn_bbcore::compare_results ......................................   Passed    1.34 sec
223/277 Test #218: testcorenrn_conc::compare_results ........................................   Passed    1.33 sec
        Start 237: testcorenrn_patstim::neuron
224/277 Test #191: pyinit::nrniv_pydef_hoc_command_nrnpython ................................   Passed    1.80 sec
225/277 Test  #98: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ...............   Passed   23.75 sec
        Start 238: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
226/277 Test  #99: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ......................   Passed   23.70 sec
227/277 Test #224: testcorenrn_deriv::compare_results .......................................   Passed    1.18 sec
        Start 239: testcorenrn_patstim::coreneuron_cpu_offline
228/277 Test #236: testcorenrn_kin::compare_results .........................................   Passed    1.32 sec
229/277 Test #268: channel_benchmark_hippo::compare_results .................................   Passed    1.22 sec
        Start 242: testcorenrn_vecplay::neuron
230/277 Test #272: channel_benchmark_sscx::compare_results ..................................   Passed    1.24 sec
231/277 Test #190: pyinit::pydef_command_import_neuron ......................................   Passed    4.80 sec
        Start 243: testcorenrn_vecplay::coreneuron_cpu_online
232/277 Test #189: pyinit::nrniv_pydef_python_command_import_neuron .........................   Passed    5.27 sec
233/277 Test #228: testcorenrn_gf::coreneuron_cpu_offline ...................................   Passed    4.37 sec
        Start 244: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
234/277 Test #239: testcorenrn_patstim::coreneuron_cpu_offline ..............................   Passed    4.21 sec
        Start 245: testcorenrn_vecplay::coreneuron_cpu_offline
235/277 Test #237: testcorenrn_patstim::neuron ..............................................   Passed    5.91 sec
        Start 254: testcorenrn_watch::neuron
236/277 Test #242: testcorenrn_vecplay::neuron ..............................................   Passed    5.78 sec
        Start 255: testcorenrn_watch::coreneuron_cpu_online
237/277 Test #227: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ...................   Passed    8.46 sec
        Start 256: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
        Start 230: testcorenrn_gf::compare_results
238/277 Test #245: testcorenrn_vecplay::coreneuron_cpu_offline ..............................   Passed    3.43 sec
        Start 257: testcorenrn_watch::coreneuron_cpu_offline
239/277 Test #230: testcorenrn_gf::compare_results ..........................................   Passed    1.18 sec
240/277 Test #243: testcorenrn_vecplay::coreneuron_cpu_online ...............................   Passed    7.43 sec
        Start 260: testcorenrn_netstimdirect::direct_netstimdirect
241/277 Test #254: testcorenrn_watch::neuron ................................................   Passed    5.40 sec
        Start 261: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
242/277 Test #257: testcorenrn_watch::coreneuron_cpu_offline ................................   Passed    3.57 sec
        Start  69: parallel::partrans
243/277 Test #244: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ..............   Passed    7.39 sec
        Start  70: parallel::netpar
        Start 247: testcorenrn_vecplay::compare_results
244/277 Test #247: testcorenrn_vecplay::compare_results .....................................   Passed    1.33 sec
245/277 Test #238: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ..................   Passed   13.56 sec
        Start  71: parallel::bas
        Start 241: testcorenrn_patstim::compare_results
246/277 Test #255: testcorenrn_watch::coreneuron_cpu_online .................................   Passed    8.16 sec
        Start  72: parallel::nrntest_fast
247/277 Test #241: testcorenrn_patstim::compare_results .....................................   Passed    1.39 sec
248/277 Test #256: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................   Passed    8.56 sec
        Start  93: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
        Start 259: testcorenrn_watch::compare_results
249/277 Test #259: testcorenrn_watch::compare_results .......................................   Passed    1.64 sec
250/277 Test #260: testcorenrn_netstimdirect::direct_netstimdirect ..........................   Passed    9.24 sec
        Start  94: coreneuron_modtests::inputpresyn_py_cpu
251/277 Test  #69: parallel::partrans .......................................................   Passed    9.23 sec
252/277 Test  #70: parallel::netpar .........................................................   Passed    9.19 sec
        Start 193: reduced_dentate::neuron
253/277 Test #261: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate .........   Passed    9.56 sec
        Start 262: testcorenrn_netstimdirect::compare_results
254/277 Test #262: testcorenrn_netstimdirect::compare_results ...............................   Passed    1.15 sec
255/277 Test  #93: coreneuron_modtests::spikes_mpi_file_mode_py_cpu .........................   Passed    9.05 sec
        Start 194: reduced_dentate::coreneuron_cpu
256/277 Test  #94: coreneuron_modtests::inputpresyn_py_cpu ..................................   Passed    7.49 sec
257/277 Test  #71: parallel::bas ............................................................   Passed   17.74 sec
        Start 248: testcorenrn_vecevent::neuron
258/277 Test #193: reduced_dentate::neuron ..................................................   Passed   11.86 sec
        Start 249: testcorenrn_vecevent::coreneuron_cpu_online
259/277 Test  #72: parallel::nrntest_fast ...................................................   Passed   21.52 sec
260/277 Test #248: testcorenrn_vecevent::neuron .............................................   Passed    6.71 sec
        Start 204: external_ringtest::coreneuron_cpu_mpi_threads
261/277 Test #194: reduced_dentate::coreneuron_cpu ..........................................   Passed   14.72 sec
        Start 250: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
        Start 195: reduced_dentate::compare_results
262/277 Test #195: reduced_dentate::compare_results .........................................   Passed    1.17 sec
263/277 Test #249: testcorenrn_vecevent::coreneuron_cpu_online ..............................   Passed    8.81 sec
        Start 251: testcorenrn_vecevent::coreneuron_cpu_offline
264/277 Test #251: testcorenrn_vecevent::coreneuron_cpu_offline .............................   Passed    5.08 sec
        Start 273: olfactory-bulb-3d::neuron
265/277 Test #204: external_ringtest::coreneuron_cpu_mpi_threads ............................   Passed    8.74 sec
        Start 205: external_ringtest::coreneuron_cpu_mpi_threads_python
266/277 Test #250: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .............   Passed    9.80 sec
        Start 275: olfactory-bulb-3d::coreneuron_cpu_online
        Start 253: testcorenrn_vecevent::compare_results
267/277 Test #253: testcorenrn_vecevent::compare_results ....................................   Passed    1.26 sec
268/277 Test #205: external_ringtest::coreneuron_cpu_mpi_threads_python .....................   Passed    8.66 sec
        Start  68: parallel::subworld
        Start 206: external_ringtest::compare_results
269/277 Test #206: external_ringtest::compare_results .......................................   Passed    0.79 sec
270/277 Test  #68: parallel::subworld .......................................................   Passed    8.32 sec
        Start  95: coreneuron_modtests::test_subworlds_py_cpu
271/277 Test  #95: coreneuron_modtests::test_subworlds_py_cpu ...............................   Passed    6.31 sec
272/277 Test #275: olfactory-bulb-3d::coreneuron_cpu_online .................................   Passed   47.05 sec
273/277 Test #273: olfactory-bulb-3d::neuron ................................................   Passed   60.40 sec
        Start 277: olfactory-bulb-3d::compare_results
274/277 Test #277: olfactory-bulb-3d::compare_results .......................................   Passed    1.11 sec
275/277 Test #192: external_nrntest .........................................................   Passed  651.31 sec
        Start 263: tqperf::coreneuron_special
276/277 Test #263: tqperf::coreneuron_special ...............................................   Passed   15.72 sec
        Start 264: tqperf::coreneuron_python
277/277 Test #264: tqperf::coreneuron_python ................................................   Passed   16.25 sec

100% tests passed, 0 tests failed out of 277

Total Test time (real) = 773.39 sec
$ cp -r Testing/ ${CI_PROJECT_DIR}/
$ module load unstable unit-test-translator
Autoloading python/3.10.8
$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml
$ exit ${i_am_a_failure}
section_end:1682532186:step_script
section_start:1682532186:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=14388 revision=58ba2b95 version=14.2.0
initial_environment.env: found 1 matching files and directories 
Testing/: found 7 matching files and directories   
Uploading artifacts as "archive" to coordinator... ok  id=674226 responseStatus=201 Created token=64_Hq5CP
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=14477 revision=58ba2b95 version=14.2.0
ctest.xml: found 1 matching files and directories  
Uploading artifacts as "junit" to coordinator... ok  id=674226 responseStatus=201 Created token=64_Hq5CP
section_end:1682532189:upload_artifacts_on_success
section_start:1682532189:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1682532191:cleanup_file_variables
Job succeeded

test-neuron-mod2c-nvhpc-acc-shared.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1682531723:resolve_secrets
Resolving secrets
section_end:1682531723:resolve_secrets
section_start:1682531723:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3037011301, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 118457, build ref 2e15478ea7527495aa989eaf5bebdcb6a9ba2a26, job ID 674229
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457, optional exclusive flag , optional cpus per task flag --cpus-per-task=2, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J674229_PROD_P2160_CP2_C3
Job parameters: memory=76G, cpus_per_task=2, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
Submitted batch job 1430568
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=2 --mem=76G    --job-name=GL_J674229_PROD_P2160_CP2_C3 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P118457 --ntasks=16 --jobid=1430568 --cpus-per-task=2 --mem=76G     
section_end:1682531725:prepare_executor
section_start:1682531725:prepare_script
Preparing environment
Using git from spack modules
Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch...
section_end:1682531733:prepare_script
section_start:1682531733:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1682531735:get_sources
section_start:1682531735:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:neuron:mod2c:nvhpc:acc:shared (674221)...
Runtime platform                                    arch=amd64 os=linux pid=8190 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=674221 responseStatus=200 OK token=64_NHUJF
section_end:1682531736:download_artifacts
section_start:1682531736:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ cd ${SPACK_BUILD_DIR}
$ export BOOST_TEST_COLOR_OUTPUT=no
$ i_am_a_failure=0
$ spack ${SPACK_EXTRA_FLAGS} build-env ${SPACK_FULL_SPEC} -- ctest --no-tests=error --output-on-failure -T Test || i_am_a_failure=1
   Site: r1i4n5
   Build name: Linux-nvc++
Create new tag: 20230426-1756 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P118457/J674221/spack-build/spack-stage-neuron-develop-hifxqzmog4bmg6bsloqo7kwm3k7ncn4b/spack-build-hifxqzm
        Start 225: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start 232: external_ringtest::coreneuron_gpu_mpi_offline::preparation
        Start 240: testcorenrn_bbcore::coreneuron_gpu_offline::preparation
        Start 244: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
        Start 250: testcorenrn_conc::coreneuron_gpu_offline::preparation
        Start 254: testcorenrn_conc::coreneuron_cpu_offline::preparation
        Start 260: testcorenrn_deriv::coreneuron_gpu_offline::preparation
        Start 264: testcorenrn_deriv::coreneuron_cpu_offline::preparation
        Start 270: testcorenrn_gf::coreneuron_gpu_offline::preparation
        Start 274: testcorenrn_gf::coreneuron_cpu_offline::preparation
        Start 280: testcorenrn_kin::coreneuron_gpu_offline::preparation
        Start 284: testcorenrn_kin::coreneuron_cpu_offline::preparation
  1/347 Test #240: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ..................   Passed    3.32 sec
        Start 289: testcorenrn_patstim::coreneuron_gpu_offline::preparation
  2/347 Test #250: testcorenrn_conc::coreneuron_gpu_offline::preparation ....................   Passed    3.40 sec
        Start 143: pyinit::nrniv_py3.10_python_check_sys_path::preparation
  3/347 Test #143: pyinit::nrniv_py3.10_python_check_sys_path::preparation ..................   Passed    0.06 sec
        Start 145: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation
  4/347 Test #145: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ...............   Passed    0.05 sec
        Start 147: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation
  5/347 Test #147: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................   Passed    0.05 sec
        Start 149: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation
  6/347 Test #260: testcorenrn_deriv::coreneuron_gpu_offline::preparation ...................   Passed    3.58 sec
        Start 151: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation
  7/347 Test #244: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ..................   Passed    3.61 sec
        Start 153: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation
  8/347 Test #149: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation .............   Passed    0.06 sec
        Start 155: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation
  9/347 Test #254: testcorenrn_conc::coreneuron_cpu_offline::preparation ....................   Passed    3.63 sec
        Start 157: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation
 10/347 Test #151: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ...........   Passed    0.07 sec
        Start 159: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation
 11/347 Test #264: testcorenrn_deriv::coreneuron_cpu_offline::preparation ...................   Passed    3.66 sec
        Start 161: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation
 12/347 Test #153: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........   Passed    0.08 sec
        Start 163: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation
 13/347 Test #280: testcorenrn_kin::coreneuron_gpu_offline::preparation .....................   Passed    3.67 sec
        Start 165: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation
 14/347 Test #284: testcorenrn_kin::coreneuron_cpu_offline::preparation .....................   Passed    3.68 sec
        Start 167: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation
 15/347 Test #155: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ...........   Passed    0.11 sec
        Start 169: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation
 16/347 Test #157: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........   Passed    0.12 sec
        Start 171: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation
 17/347 Test #159: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ......   Passed    0.20 sec
        Start 173: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation
 18/347 Test #161: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ...   Passed    0.22 sec
        Start 179: pyinit::nrniv_pydef_python_check_sys_path::preparation
 19/347 Test #163: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation .......   Passed    0.26 sec
        Start 181: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
 20/347 Test #165: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation ....   Passed    0.26 sec
        Start 183: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
 21/347 Test #167: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........   Passed    0.26 sec
        Start 185: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
 22/347 Test #169: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation .....   Passed    0.27 sec
        Start 187: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
 23/347 Test #171: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation .......   Passed    0.26 sec
        Start 189: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
 24/347 Test #173: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation ....   Passed    0.26 sec
        Start 191: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
 25/347 Test #179: pyinit::nrniv_pydef_python_check_sys_path::preparation ...................   Passed    0.26 sec
        Start 193: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
 26/347 Test #181: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................   Passed    0.28 sec
        Start 195: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
 27/347 Test #183: pyinit::nrniv_pydef_python_check_sys_prefix::preparation .................   Passed    0.27 sec
        Start 197: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
 28/347 Test #185: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation ..............   Passed    0.27 sec
        Start 199: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
 29/347 Test #187: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............   Passed    0.26 sec
        Start 201: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
 30/347 Test #189: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation .........   Passed    0.28 sec
        Start 203: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
 31/347 Test #191: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............   Passed    0.31 sec
        Start 205: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
 32/347 Test #193: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation .........   Passed    0.33 sec
        Start 207: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
 33/347 Test #195: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation .......   Passed    0.35 sec
        Start 209: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
 34/347 Test #197: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation ....   Passed    0.36 sec
        Start 218: external_ringtest::neuron
 35/347 Test #199: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........   Passed    0.36 sec
        Start 236: testcorenrn_bbcore::neuron
 36/347 Test #201: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation .....   Passed    0.35 sec
        Start 237: testcorenrn_bbcore::coreneuron_gpu_online
 37/347 Test #270: testcorenrn_gf::coreneuron_gpu_offline::preparation ......................   Passed    4.62 sec
        Start 292: testcorenrn_patstim::coreneuron_cpu_offline::preparation
 38/347 Test #203: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation .........   Passed    0.35 sec
        Start 238: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate
 39/347 Test #205: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ......   Passed    0.38 sec
        Start 239: testcorenrn_bbcore::coreneuron_gpu_offline
 40/347 Test #207: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........   Passed    0.34 sec
        Start 241: testcorenrn_bbcore::coreneuron_cpu_online
 41/347 Test #209: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation .....   Passed    0.24 sec
        Start 242: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 42/347 Test #274: testcorenrn_gf::coreneuron_cpu_offline::preparation ......................   Passed    5.07 sec
        Start 298: testcorenrn_vecplay::coreneuron_gpu_offline::preparation
 43/347 Test #218: external_ringtest::neuron ................................................   Passed    1.53 sec
        Start 243: testcorenrn_bbcore::coreneuron_cpu_offline
 44/347 Test #289: testcorenrn_patstim::coreneuron_gpu_offline::preparation .................   Passed    3.05 sec
        Start 246: testcorenrn_conc::neuron
 45/347 Test #236: testcorenrn_bbcore::neuron ...............................................   Passed    2.24 sec
        Start 247: testcorenrn_conc::coreneuron_gpu_online
 46/347 Test #232: external_ringtest::coreneuron_gpu_mpi_offline::preparation ...............   Passed    7.44 sec
        Start 302: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
 47/347 Test #225: external_ringtest::coreneuron_cpu_mpi_offline::preparation ...............   Passed    7.52 sec
        Start 318: testcorenrn_watch::coreneuron_gpu_offline::preparation
 48/347 Test #241: testcorenrn_bbcore::coreneuron_cpu_online ................................   Passed    3.11 sec
        Start 248: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate
 49/347 Test #298: testcorenrn_vecplay::coreneuron_gpu_offline::preparation .................   Passed    2.96 sec
        Start 322: testcorenrn_watch::coreneuron_cpu_offline::preparation
 50/347 Test #292: testcorenrn_patstim::coreneuron_cpu_offline::preparation .................   Passed    3.48 sec
        Start 219: external_ringtest::neuron_mpi
 51/347 Test #243: testcorenrn_bbcore::coreneuron_cpu_offline ...............................   Passed    2.02 sec
        Start 249: testcorenrn_conc::coreneuron_gpu_offline
 52/347 Test #246: testcorenrn_conc::neuron .................................................   Passed    1.79 sec
        Start 251: testcorenrn_conc::coreneuron_cpu_online
 53/347 Test #242: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ...............   Passed    3.40 sec
        Start 252: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 54/347 Test #239: testcorenrn_bbcore::coreneuron_gpu_offline ...............................   Passed    3.94 sec
        Start 253: testcorenrn_conc::coreneuron_cpu_offline
 55/347 Test #302: testcorenrn_vecplay::coreneuron_cpu_offline::preparation .................   Passed    1.61 sec
        Start 220: external_ringtest::neuron_mpi_python
 56/347 Test #318: testcorenrn_watch::coreneuron_gpu_offline::preparation ...................   Passed    1.62 sec
        Start 221: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
 57/347 Test #322: testcorenrn_watch::coreneuron_cpu_offline::preparation ...................   Passed    1.89 sec
        Start 222: external_ringtest::coreneuron_cpu_mpi
 58/347 Test #253: testcorenrn_conc::coreneuron_cpu_offline .................................   Passed    1.67 sec
        Start 256: testcorenrn_deriv::neuron
 59/347 Test #251: testcorenrn_conc::coreneuron_cpu_online ..................................   Passed    2.31 sec
        Start 257: testcorenrn_deriv::coreneuron_gpu_online
 60/347 Test #252: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate .................   Passed    2.34 sec
        Start 258: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate
 61/347 Test #219: external_ringtest::neuron_mpi ............................................   Passed    2.61 sec
        Start 223: external_ringtest::coreneuron_cpu_mpi_python
 62/347 Test #220: external_ringtest::neuron_mpi_python .....................................   Passed    2.52 sec
        Start 224: external_ringtest::coreneuron_cpu_mpi_offline
 63/347 Test #256: testcorenrn_deriv::neuron ................................................   Passed    1.50 sec
        Start 259: testcorenrn_deriv::coreneuron_gpu_offline
 64/347 Test #222: external_ringtest::coreneuron_cpu_mpi ....................................   Passed    2.67 sec
        Start 228: external_ringtest::coreneuron_gpu_mpi_offline_saverestore
 65/347 Test #237: testcorenrn_bbcore::coreneuron_gpu_online ................................   Passed    8.04 sec
        Start 261: testcorenrn_deriv::coreneuron_cpu_online
 66/347 Test #223: external_ringtest::coreneuron_cpu_mpi_python .............................   Passed    2.70 sec
        Start 229: external_ringtest::coreneuron_gpu_mpi
 67/347 Test #224: external_ringtest::coreneuron_cpu_mpi_offline ............................   Passed    2.53 sec
        Start 230: external_ringtest::coreneuron_gpu_mpi_python
 68/347 Test #261: testcorenrn_deriv::coreneuron_cpu_online .................................   Passed    1.98 sec
        Start 262: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 69/347 Test #238: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ...............   Passed   10.17 sec
        Start 263: testcorenrn_deriv::coreneuron_cpu_offline
 70/347 Test #263: testcorenrn_deriv::coreneuron_cpu_offline ................................   Passed    1.76 sec
        Start 276: testcorenrn_kin::neuron
 71/347 Test #262: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................   Passed    2.13 sec
        Start 277: testcorenrn_kin::coreneuron_gpu_online
 72/347 Test #221: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................   Passed    8.41 sec
        Start 231: external_ringtest::coreneuron_gpu_mpi_offline
 73/347 Test #276: testcorenrn_kin::neuron ..................................................   Passed    1.48 sec
        Start 278: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate
 74/347 Test #228: external_ringtest::coreneuron_gpu_mpi_offline_saverestore ................   Passed    7.82 sec
        Start 266: testcorenrn_gf::neuron
 75/347 Test #247: testcorenrn_conc::coreneuron_gpu_online ..................................   Passed   13.79 sec
        Start 279: testcorenrn_kin::coreneuron_gpu_offline
 76/347 Test #266: testcorenrn_gf::neuron ...................................................   Passed    1.86 sec
        Start 267: testcorenrn_gf::coreneuron_gpu_online
 77/347 Test #249: testcorenrn_conc::coreneuron_gpu_offline .................................   Passed   17.07 sec
        Start 281: testcorenrn_kin::coreneuron_cpu_online
 78/347 Test #281: testcorenrn_kin::coreneuron_cpu_online ...................................   Passed    1.83 sec
        Start 282: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 79/347 Test #282: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ..................   Passed    1.90 sec
        Start 283: testcorenrn_kin::coreneuron_cpu_offline
 80/347 Test #283: testcorenrn_kin::coreneuron_cpu_offline ..................................   Passed    1.55 sec
        Start 287: testcorenrn_patstim::coreneuron_gpu_offline_saverestore
 81/347 Test #248: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate .................   Passed   23.29 sec
        Start 288: testcorenrn_patstim::coreneuron_gpu_offline
 82/347 Test #257: testcorenrn_deriv::coreneuron_gpu_online .................................   Passed   21.77 sec
        Start 329: channel_benchmark_hippo::neuron
 83/347 Test #259: testcorenrn_deriv::coreneuron_gpu_offline ................................   Passed   21.62 sec
        Start 330: channel_benchmark_hippo::coreneuron_gpu_online
 84/347 Test #258: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate ................   Passed   24.80 sec
        Start 331: channel_benchmark_hippo::coreneuron_gpu_filemode
 85/347 Test #277: testcorenrn_kin::coreneuron_gpu_online ...................................   Passed   22.76 sec
        Start 332: channel_benchmark_hippo::coreneuron_cpu_online
 86/347 Test #279: testcorenrn_kin::coreneuron_gpu_offline ..................................   Passed   21.56 sec
        Start 333: channel_benchmark_hippo::coreneuron_cpu_filemode
 87/347 Test #229: external_ringtest::coreneuron_gpu_mpi ....................................   Passed   29.76 sec
        Start 268: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate
 88/347 Test #230: external_ringtest::coreneuron_gpu_mpi_python .............................   Passed   29.52 sec
        Start 269: testcorenrn_gf::coreneuron_gpu_offline
 89/347 Test #231: external_ringtest::coreneuron_gpu_mpi_offline ............................   Passed   27.58 sec
        Start 271: testcorenrn_gf::coreneuron_cpu_online
 90/347 Test #278: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ..................   Passed   28.31 sec
        Start 335: channel_benchmark_sscx::neuron
 91/347 Test #271: testcorenrn_gf::coreneuron_cpu_online ....................................   Passed    2.27 sec
        Start 272: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 92/347 Test #272: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ...................   Passed    2.42 sec
        Start 273: testcorenrn_gf::coreneuron_cpu_offline
 93/347 Test #288: testcorenrn_patstim::coreneuron_gpu_offline ..............................   Passed   19.41 sec
        Start 336: channel_benchmark_sscx::coreneuron_gpu_online
 94/347 Test #267: testcorenrn_gf::coreneuron_gpu_online ....................................   Passed   28.48 sec
        Start 286: testcorenrn_patstim::neuron
 95/347 Test #273: testcorenrn_gf::coreneuron_cpu_offline ...................................   Passed    1.96 sec
        Start 290: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
 96/347 Test #287: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ..................   Passed   21.40 sec
        Start 337: channel_benchmark_sscx::coreneuron_gpu_filemode
 97/347 Test #286: testcorenrn_patstim::neuron ..............................................   Passed    1.61 sec
        Start 291: testcorenrn_patstim::coreneuron_cpu_offline
 98/347 Test #291: testcorenrn_patstim::coreneuron_cpu_offline ..............................   Passed    1.68 sec
        Start 294: testcorenrn_vecplay::neuron
 99/347 Test #269: testcorenrn_gf::coreneuron_gpu_offline ...................................   Passed   10.72 sec
        Start 295: testcorenrn_vecplay::coreneuron_gpu_online
100/347 Test #268: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ...................   Passed   13.15 sec
        Start 296: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate
101/347 Test #294: testcorenrn_vecplay::neuron ..............................................   Passed    2.98 sec
        Start 297: testcorenrn_vecplay::coreneuron_gpu_offline
102/347 Test #290: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ..................   Passed    8.92 sec
        Start 299: testcorenrn_vecplay::coreneuron_cpu_online
103/347 Test #299: testcorenrn_vecplay::coreneuron_cpu_online ...............................   Passed    2.03 sec
        Start 300: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
104/347 Test #300: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ..............   Passed    2.09 sec
        Start 301: testcorenrn_vecplay::coreneuron_cpu_offline
105/347 Test #301: testcorenrn_vecplay::coreneuron_cpu_offline ..............................   Passed    1.70 sec
        Start 314: testcorenrn_watch::neuron
106/347 Test #314: testcorenrn_watch::neuron ................................................   Passed    1.58 sec
        Start 315: testcorenrn_watch::coreneuron_gpu_online
107/347 Test #295: testcorenrn_vecplay::coreneuron_gpu_online ...............................   Passed   22.48 sec
        Start 316: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate
108/347 Test #297: testcorenrn_vecplay::coreneuron_gpu_offline ..............................   Passed   20.49 sec
        Start 317: testcorenrn_watch::coreneuron_gpu_offline
109/347 Test #315: testcorenrn_watch::coreneuron_gpu_online .................................   Passed   14.30 sec
        Start 319: testcorenrn_watch::coreneuron_cpu_online
110/347 Test #319: testcorenrn_watch::coreneuron_cpu_online .................................   Passed    2.06 sec
        Start 320: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
111/347 Test #320: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................   Passed    2.24 sec
        Start 321: testcorenrn_watch::coreneuron_cpu_offline
112/347 Test #316: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate ................   Passed   11.62 sec
        Start 324: testcorenrn_netstimdirect::direct_netstimdirect
113/347 Test #321: testcorenrn_watch::coreneuron_cpu_offline ................................   Passed    1.77 sec
        Start 325: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
114/347 Test #317: testcorenrn_watch::coreneuron_gpu_offline ................................   Passed   12.81 sec
        Start 338: channel_benchmark_sscx::coreneuron_cpu_online
        Start 339: channel_benchmark_sscx::coreneuron_cpu_filemode
115/347 Test #296: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ..............   Passed   34.12 sec
        Start   1: unit_tests::testneuron
        Start   2: ringtest
116/347 Test   #1: unit_tests::testneuron ...................................................   Passed    0.07 sec
        Start   3: connect_dend
117/347 Test   #3: connect_dend .............................................................   Passed    0.14 sec
        Start   4: mpi_init::nrniv_mpiopt
118/347 Test   #2: ringtest .................................................................   Passed    0.23 sec
        Start   5: mpi_init::nrniv_nrnmpi_init
119/347 Test   #4: mpi_init::nrniv_mpiopt ...................................................   Passed    0.07 sec
        Start   6: mpi_init::python_nrnmpi_init
120/347 Test   #5: mpi_init::nrniv_nrnmpi_init ..............................................   Passed    0.07 sec
        Start   7: mpi_init::python_mpienv
121/347 Test   #6: mpi_init::python_nrnmpi_init .............................................   Passed    0.28 sec
        Start   8: mpi_init::nrniv_mpiexec_mpiopt
122/347 Test   #7: mpi_init::python_mpienv ..................................................   Passed    0.27 sec
        Start   9: mpi_init::nrniv_mpiexec_nrnmpi_init
123/347 Test   #8: mpi_init::nrniv_mpiexec_mpiopt ...........................................   Passed    2.51 sec
        Start  10: mpi_init::python_mpiexec_nrnmpi_init
124/347 Test   #9: mpi_init::nrniv_mpiexec_nrnmpi_init ......................................   Passed    2.53 sec
        Start  11: mpi_init::python_mpiexec_mpienv
125/347 Test #324: testcorenrn_netstimdirect::direct_netstimdirect ..........................   Passed    6.71 sec
        Start  12: pynrn::basic_tests_py3.10
        Start  13: coverage_tests::cover_tests
126/347 Test #325: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate .........   Passed    6.73 sec
        Start  14: example_nmodl::ca_ap_hoc
        Start  15: example_nmodl::cabpump_hoc
127/347 Test  #14: example_nmodl::ca_ap_hoc .................................................   Passed    0.09 sec
        Start  16: example_nmodl::cachan_hoc
128/347 Test  #16: example_nmodl::cachan_hoc ................................................   Passed    0.08 sec
        Start  17: example_nmodl::cadif_hoc
129/347 Test  #15: example_nmodl::cabpump_hoc ...............................................   Passed    0.30 sec
        Start  18: example_nmodl::cadifusl_hoc
130/347 Test  #17: example_nmodl::cadif_hoc .................................................   Passed    0.15 sec
        Start  19: example_nmodl::cadifusl1_hoc
131/347 Test  #10: mpi_init::python_mpiexec_nrnmpi_init .....................................   Passed    2.08 sec
        Start  20: example_nmodl::cadifusl2_hoc
132/347 Test  #18: example_nmodl::cadifusl_hoc ..............................................   Passed    0.12 sec
        Start  21: example_nmodl::cagk_hoc
133/347 Test  #11: mpi_init::python_mpiexec_mpienv ..........................................   Passed    2.09 sec
        Start  22: example_nmodl::capmp_hoc
134/347 Test  #19: example_nmodl::cadifusl1_hoc .............................................   Passed    0.16 sec
        Start  23: example_nmodl::cv_hoc
135/347 Test  #20: example_nmodl::cadifusl2_hoc .............................................   Passed    0.14 sec
        Start  24: example_nmodl::fh_hoc
136/347 Test  #21: example_nmodl::cagk_hoc ..................................................   Passed    0.16 sec
        Start  25: example_nmodl::fit1_hoc
137/347 Test  #23: example_nmodl::cv_hoc ....................................................   Passed    0.14 sec
        Start  26: example_nmodl::gap_hoc
138/347 Test  #22: example_nmodl::capmp_hoc .................................................   Passed    0.24 sec
        Start  27: example_nmodl::hh1_hoc
139/347 Test  #24: example_nmodl::fh_hoc ....................................................   Passed    0.17 sec
        Start  28: example_nmodl::hhvect_hoc
140/347 Test  #25: example_nmodl::fit1_hoc ..................................................   Passed    0.24 sec
        Start  29: example_nmodl::nacum_hoc
141/347 Test  #26: example_nmodl::gap_hoc ...................................................   Passed    0.23 sec
        Start  30: example_nmodl::nadifl1_hoc
142/347 Test  #27: example_nmodl::hh1_hoc ...................................................   Passed    0.21 sec
        Start  31: example_nmodl::nadifl2_hoc
143/347 Test  #28: example_nmodl::hhvect_hoc ................................................   Passed    0.24 sec
        Start  32: example_nmodl::nadifl3_hoc
144/347 Test  #29: example_nmodl::nacum_hoc .................................................   Passed    0.18 sec
        Start  33: example_nmodl::nadifl4_hoc
145/347 Test  #30: example_nmodl::nadifl1_hoc ...............................................   Passed    0.20 sec
        Start  34: example_nmodl::obj_ex_hoc
146/347 Test  #31: example_nmodl::nadifl2_hoc ...............................................   Passed    0.26 sec
        Start  35: example_nmodl::order_hoc
147/347 Test  #32: example_nmodl::nadifl3_hoc ...............................................   Passed    0.21 sec
        Start  36: example_nmodl::passiv_hoc
148/347 Test  #34: example_nmodl::obj_ex_hoc ................................................   Passed    0.12 sec
        Start  37: example_nmodl::stim1_hoc
149/347 Test  #33: example_nmodl::nadifl4_hoc ...............................................   Passed    0.22 sec
        Start  38: example_nmodl::syn1_hoc
150/347 Test  #36: example_nmodl::passiv_hoc ................................................   Passed    0.16 sec
        Start  39: example_nmodl::synpre_hoc
151/347 Test  #37: example_nmodl::stim1_hoc .................................................   Passed    0.20 sec
        Start  40: example_nmodl::tstextrn_hoc
152/347 Test  #35: example_nmodl::order_hoc .................................................   Passed    0.28 sec
        Start  41: example_nmodl::tstpnt1_hoc
153/347 Test  #38: example_nmodl::syn1_hoc ..................................................   Passed    0.20 sec
        Start  42: example_nmodl::tstpnt2_hoc
154/347 Test  #39: example_nmodl::synpre_hoc ................................................   Passed    0.22 sec
        Start  43: example_nmodl::tstvec_hoc
155/347 Test  #40: example_nmodl::tstextrn_hoc ..............................................   Passed    0.15 sec
        Start  44: example_nmodl::cagkftab_py
156/347 Test  #42: example_nmodl::tstpnt2_hoc ...............................................   Passed    0.16 sec
        Start  45: example_nmodl::expsynspine_py
157/347 Test  #41: example_nmodl::tstpnt1_hoc ...............................................   Passed    0.17 sec
        Start  46: example_nmodl::nonlin_py
158/347 Test  #43: example_nmodl::tstvec_hoc ................................................   Passed    0.14 sec
        Start  47: example_nmodl::tstpnt1_py
159/347 Test  #45: example_nmodl::expsynspine_py ............................................   Passed    0.40 sec
        Start  48: example_nmodl::tstpnt2_py
160/347 Test  #47: example_nmodl::tstpnt1_py ................................................   Passed    0.32 sec
        Start  49: example_nmodl::vlag_py
161/347 Test  #48: example_nmodl::tstpnt2_py ................................................   Passed    0.27 sec
        Start  50: hoctests::test_loadbal_hoc
162/347 Test  #49: example_nmodl::vlag_py ...................................................   Passed    0.31 sec
        Start  51: hoctests::perf1_hoc
163/347 Test  #50: hoctests::test_loadbal_hoc ...............................................   Passed    0.09 sec
        Start  52: hoctests::test1_hoc
164/347 Test  #52: hoctests::test1_hoc ......................................................   Passed    0.27 sec
        Start  53: hoctests::test2_hoc
165/347 Test  #46: example_nmodl::nonlin_py .................................................   Passed    1.13 sec
        Start  54: hoctests::test3_hoc
166/347 Test  #53: hoctests::test2_hoc ......................................................   Passed    0.14 sec
        Start  55: hoctests::test4_hoc
167/347 Test  #13: coverage_tests::cover_tests ..............................................   Passed    2.92 sec
        Start  56: hoctests::test5_hoc
168/347 Test  #55: hoctests::test4_hoc ......................................................   Passed    0.09 sec
        Start  57: hoctests::test6_hoc
169/347 Test  #54: hoctests::test3_hoc ......................................................   Passed    0.14 sec
        Start  58: hoctests::test7_hoc
170/347 Test  #56: hoctests::test5_hoc ......................................................   Passed    0.08 sec
        Start  59: hoctests::test8_hoc
171/347 Test  #58: hoctests::test7_hoc ......................................................   Passed    0.09 sec
        Start  60: hoctests::test9_hoc
172/347 Test  #57: hoctests::test6_hoc ......................................................   Passed    0.10 sec
        Start  61: hoctests::test_kschan_py
173/347 Test  #59: hoctests::test8_hoc ......................................................   Passed    0.08 sec
        Start  62: hoctests::test_neurondemo_py
174/347 Test  #60: hoctests::test9_hoc ......................................................   Passed    0.08 sec
        Start  63: hoctests::test_nrniv-launch_py
175/347 Test  #63: hoctests::test_nrniv-launch_py ...........................................   Passed    0.21 sec
        Start  64: hoctests::test_shape_py
176/347 Test  #62: hoctests::test_neurondemo_py .............................................   Passed    0.29 sec
        Start  65: hoctests::test1_py
177/347 Test  #61: hoctests::test_kschan_py .................................................   Passed    0.35 sec
        Start  66: hoctests::test2_py
178/347 Test  #65: hoctests::test1_py .......................................................   Passed    0.28 sec
        Start  67: hoctests::test9_py
179/347 Test  #64: hoctests::test_shape_py ..................................................   Passed    0.38 sec
        Start  73: coreneuron_standalone::test_nrn_corenrn_standalone
180/347 Test  #51: hoctests::perf1_hoc ......................................................   Passed    1.34 sec
        Start  74: nmodl_tests::test_table
181/347 Test  #66: hoctests::test2_py .......................................................   Passed    0.37 sec
        Start  75: nmodl_tests::test_disc
182/347 Test  #67: hoctests::test9_py .......................................................   Passed    0.39 sec
        Start  76: nmodl_tests::test_function_table
183/347 Test  #44: example_nmodl::cagkftab_py ...............................................   Passed    2.59 sec
        Start  77: nmodl_tests::test_kinetic
184/347 Test  #75: nmodl_tests::test_disc ...................................................   Passed    2.48 sec
        Start  78: coreneuron_modtests::version_macros
185/347 Test  #74: nmodl_tests::test_table ..................................................   Passed    2.60 sec
        Start  79: coreneuron_modtests::fornetcon_py_cpu
186/347 Test  #73: coreneuron_standalone::test_nrn_corenrn_standalone .......................   Passed    2.78 sec
        Start  80: coreneuron_modtests::direct_py_cpu
187/347 Test  #76: nmodl_tests::test_function_table .........................................   Passed    2.56 sec
        Start  81: coreneuron_modtests::direct_hoc_cpu
188/347 Test  #77: nmodl_tests::test_kinetic ................................................   Passed    2.55 sec
        Start  82: coreneuron_modtests::spikes_py_cpu
189/347 Test  #81: coreneuron_modtests::direct_hoc_cpu ......................................   Passed    0.96 sec
        Start  83: coreneuron_modtests::spikes_file_mode_py_cpu
190/347 Test  #78: coreneuron_modtests::version_macros ......................................   Passed    2.87 sec
        Start  84: coreneuron_modtests::fast_imem_py_cpu
191/347 Test  #79: coreneuron_modtests::fornetcon_py_cpu ....................................   Passed    2.91 sec
        Start  85: coreneuron_modtests::datareturn_py_cpu
192/347 Test  #80: coreneuron_modtests::direct_py_cpu .......................................   Passed    2.85 sec
        Start  86: coreneuron_modtests::test_units_py_cpu
193/347 Test  #82: coreneuron_modtests::spikes_py_cpu .......................................   Passed    2.89 sec
        Start  87: coreneuron_modtests::test_netmove_py_cpu
194/347 Test  #83: coreneuron_modtests::spikes_file_mode_py_cpu .............................   Passed    2.62 sec
        Start  88: coreneuron_modtests::test_pointer_py_cpu
195/347 Test  #12: pynrn::basic_tests_py3.10 ................................................   Passed   10.56 sec
        Start  89: coreneuron_modtests::test_watchrange_py_cpu
196/347 Test  #86: coreneuron_modtests::test_units_py_cpu ...................................   Passed    2.65 sec
        Start  90: coreneuron_modtests::test_psolve_py_cpu
197/347 Test  #84: coreneuron_modtests::fast_imem_py_cpu ....................................   Passed    2.89 sec
        Start  91: coreneuron_modtests::test_ba_py_cpu
198/347 Test  #85: coreneuron_modtests::datareturn_py_cpu ...................................   Passed    3.00 sec
        Start  92: coreneuron_modtests::test_natrans_py_cpu
199/347 Test  #87: coreneuron_modtests::test_netmove_py_cpu .................................   Passed    2.82 sec
        Start  96: nmodl_tests_coreneuron::test_table_coreneuron_cpu
200/347 Test  #89: coreneuron_modtests::test_watchrange_py_cpu ..............................   Passed    2.74 sec
        Start  97: nmodl_tests_coreneuron::test_disc_coreneuron_cpu
201/347 Test  #88: coreneuron_modtests::test_pointer_py_cpu .................................   Passed    4.05 sec
        Start  98: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu
202/347 Test  #91: coreneuron_modtests::test_ba_py_cpu ......................................   Passed    2.62 sec
        Start  99: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu
203/347 Test  #90: coreneuron_modtests::test_psolve_py_cpu ..................................   Passed    2.73 sec
        Start 100: coreneuron_modtests::fornetcon_py_gpu
204/347 Test  #96: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................   Passed    2.40 sec
        Start 101: coreneuron_modtests::direct_py_gpu
205/347 Test  #97: nmodl_tests_coreneuron::test_disc_coreneuron_cpu .........................   Passed    2.21 sec
        Start 102: coreneuron_modtests::direct_hoc_gpu
206/347 Test  #92: coreneuron_modtests::test_natrans_py_cpu .................................   Passed    3.56 sec
        Start 103: coreneuron_modtests::spikes_py_gpu
207/347 Test  #98: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ...............   Passed    2.17 sec
        Start 104: coreneuron_modtests::spikes_file_mode_py_gpu
208/347 Test  #99: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ......................   Passed    2.17 sec
        Start 105: coreneuron_modtests::fast_imem_py_gpu
209/347 Test #102: coreneuron_modtests::direct_hoc_gpu ......................................   Passed    4.00 sec
        Start 106: coreneuron_modtests::datareturn_py_gpu
210/347 Test #104: coreneuron_modtests::spikes_file_mode_py_gpu .............................   Passed    5.13 sec
        Start 107: coreneuron_modtests::test_units_py_gpu
211/347 Test #105: coreneuron_modtests::fast_imem_py_gpu ....................................   Passed    5.25 sec
        Start 108: coreneuron_modtests::test_netmove_py_gpu
212/347 Test #101: coreneuron_modtests::direct_py_gpu .......................................   Passed    8.34 sec
        Start 109: coreneuron_modtests::test_pointer_py_gpu
213/347 Test #100: coreneuron_modtests::fornetcon_py_gpu ....................................   Passed    8.71 sec
        Start 110: coreneuron_modtests::test_watchrange_py_gpu
214/347 Test #103: coreneuron_modtests::spikes_py_gpu .......................................   Passed    7.82 sec
        Start 111: coreneuron_modtests::test_psolve_py_gpu
215/347 Test #107: coreneuron_modtests::test_units_py_gpu ...................................   Passed    2.39 sec
        Start 112: coreneuron_modtests::test_ba_py_gpu
216/347 Test #106: coreneuron_modtests::datareturn_py_gpu ...................................   Passed    4.73 sec
        Start 113: coreneuron_modtests::test_natrans_py_gpu
217/347 Test #108: coreneuron_modtests::test_netmove_py_gpu .................................   Passed    3.27 sec
        Start 117: nmodl_tests_coreneuron::test_table_coreneuron_gpu
218/347 Test #112: coreneuron_modtests::test_ba_py_gpu ......................................   Passed    2.50 sec
        Start 118: nmodl_tests_coreneuron::test_disc_coreneuron_gpu
219/347 Test #110: coreneuron_modtests::test_watchrange_py_gpu ..............................   Passed    3.09 sec
        Start 119: nmodl_tests_coreneuron::test_function_table_coreneuron_gpu
220/347 Test #113: coreneuron_modtests::test_natrans_py_gpu .................................   Passed    2.36 sec
        Start 120: nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu
221/347 Test #111: coreneuron_modtests::test_psolve_py_gpu ..................................   Passed    3.19 sec
        Start 121: modlunit_unitstest
222/347 Test #121: modlunit_unitstest .......................................................   Passed    0.03 sec
        Start 122: modlunit_hh
223/347 Test #122: modlunit_hh ..............................................................   Passed    0.02 sec
        Start 123: modlunit_stim
224/347 Test #123: modlunit_stim ............................................................   Passed    0.02 sec
        Start 124: modlunit_pattern
225/347 Test #124: modlunit_pattern .........................................................   Passed    0.02 sec
        Start 125: pyinit::nrniv_script.py
226/347 Test #125: pyinit::nrniv_script.py ..................................................   Passed    0.11 sec
        Start 126: pyinit::nrniv_script.py_error
227/347 Test #126: pyinit::nrniv_script.py_error ............................................   Passed    0.14 sec
        Start 127: pyinit::nrniv_two_scripts.py
228/347 Test #127: pyinit::nrniv_two_scripts.py .............................................   Passed    0.12 sec
        Start 128: pyinit::nrniv_two_scripts.py_error_check_code
229/347 Test #128: pyinit::nrniv_two_scripts.py_error_check_code ............................   Passed    0.10 sec
        Start 129: pyinit::nrniv_two_scripts.py_error_check_output
230/347 Test #129: pyinit::nrniv_two_scripts.py_error_check_output ..........................   Passed    0.08 sec
        Start 130: pyinit::nrniv_python_command
231/347 Test #130: pyinit::nrniv_python_command .............................................   Passed    0.11 sec
        Start 131: pyinit::nrniv_python_command_error
232/347 Test #117: nmodl_tests_coreneuron::test_table_coreneuron_gpu ........................   Passed    2.31 sec
        Start 132: pyinit::nrniv_python_script.py
233/347 Test #131: pyinit::nrniv_python_command_error .......................................   Passed    0.16 sec
        Start 133: pyinit::nrniv_python_script.py_error
234/347 Test #132: pyinit::nrniv_python_script.py ...........................................   Passed    0.17 sec
        Start 134: pyinit::nrniv_python_command_twice
235/347 Test #133: pyinit::nrniv_python_script.py_error .....................................   Passed    0.11 sec
        Start 135: pyinit::nrniv_python_script.py_twice
236/347 Test #135: pyinit::nrniv_python_script.py_twice .....................................   Passed    0.08 sec
        Start 136: pyinit::nrniv_python_command_args
237/347 Test #134: pyinit::nrniv_python_command_twice .......................................   Passed    0.11 sec
        Start 137: pyinit::nrniv_python_script.py_args
238/347 Test #137: pyinit::nrniv_python_script.py_args ......................................   Passed    0.09 sec
        Start 138: pyinit::nrniv_nopython_PythonObject
239/347 Test #136: pyinit::nrniv_python_command_args ........................................   Passed    0.10 sec
        Start 139: pyinit::nrniv_nopython_PythonObject_pyexe
240/347 Test #138: pyinit::nrniv_nopython_PythonObject ......................................   Passed    0.06 sec
        Start 140: pyinit::nrniv_nopython_PythonObject_pyenv
241/347 Test #139: pyinit::nrniv_nopython_PythonObject_pyexe ................................   Passed    0.07 sec
        Start 141: pyinit::nrniv_py3.10_python_command_version_check
242/347 Test #140: pyinit::nrniv_nopython_PythonObject_pyenv ................................   Passed    0.08 sec
        Start 142: pyinit::nrniv_py3.10_python_check_sys_path
243/347 Test #141: pyinit::nrniv_py3.10_python_command_version_check ........................   Passed    0.14 sec
        Start 144: pyinit::nrniv_py3.10_nrnpython_check_sys_path
244/347 Test #142: pyinit::nrniv_py3.10_python_check_sys_path ...............................   Passed    0.15 sec
        Start 146: pyinit::nrniv_py3.10_python_check_sys_prefix
245/347 Test #144: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................   Passed    0.10 sec
        Start 148: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix
246/347 Test #146: pyinit::nrniv_py3.10_python_check_sys_prefix .............................   Passed    0.10 sec
        Start 150: pyinit::nrniv_py3.10_python_check_sys_exec_prefix
247/347 Test #148: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix ..........................   Passed    0.10 sec
        Start 152: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix
248/347 Test #152: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix .....................   Passed    0.10 sec
        Start 154: pyinit::nrniv_py3.10_python_check_sys_base_prefix
249/347 Test #150: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................   Passed    0.13 sec
        Start 156: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix
250/347 Test #154: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................   Passed    0.11 sec
        Start 158: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix
251/347 Test #156: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix .....................   Passed    0.11 sec
        Start 160: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix
252/347 Test #160: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................   Passed    0.10 sec
        Start 162: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding
253/347 Test #158: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ...................   Passed    0.11 sec
        Start 164: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding
254/347 Test #164: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding .................   Passed    0.10 sec
        Start 166: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding
255/347 Test #162: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding ....................   Passed    0.11 sec
        Start 168: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding
256/347 Test #166: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding .....................   Passed    0.10 sec
        Start 170: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding
257/347 Test #168: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding ..................   Passed    0.11 sec
        Start 172: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding
258/347 Test #172: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding .................   Passed    0.10 sec
        Start 174: pyinit::nrniv_py3.10_python_command_import_neuron
259/347 Test #170: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding ....................   Passed    0.13 sec
        Start 175: pyinit::py3.10_command_import_neuron
260/347 Test #118: nmodl_tests_coreneuron::test_disc_coreneuron_gpu .........................   Passed    2.69 sec
        Start 176: pyinit::nrniv_py3.10_hoc_command_nrnpython
261/347 Test #176: pyinit::nrniv_py3.10_hoc_command_nrnpython ...............................   Passed    0.08 sec
        Start 177: pyinit::nrniv_pydef_python_command_version_check
262/347 Test #119: nmodl_tests_coreneuron::test_function_table_coreneuron_gpu ...............   Passed    2.70 sec
        Start 178: pyinit::nrniv_pydef_python_check_sys_path
263/347 Test #120: nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu ......................   Passed    2.65 sec
        Start 180: pyinit::nrniv_pydef_nrnpython_check_sys_path
264/347 Test #109: coreneuron_modtests::test_pointer_py_gpu .................................   Passed    6.08 sec
        Start 182: pyinit::nrniv_pydef_python_check_sys_prefix
265/347 Test #177: pyinit::nrniv_pydef_python_command_version_check .........................   Passed    0.23 sec
        Start 184: pyinit::nrniv_pydef_nrnpython_check_sys_prefix
266/347 Test #178: pyinit::nrniv_pydef_python_check_sys_path ................................   Passed    0.29 sec
        Start 186: pyinit::nrniv_pydef_python_check_sys_exec_prefix
267/347 Test #180: pyinit::nrniv_pydef_nrnpython_check_sys_path .............................   Passed    0.29 sec
        Start 188: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix
268/347 Test #182: pyinit::nrniv_pydef_python_check_sys_prefix ..............................   Passed    0.25 sec
        Start 190: pyinit::nrniv_pydef_python_check_sys_base_prefix
269/347 Test #174: pyinit::nrniv_py3.10_python_command_import_neuron ........................   Passed    0.47 sec
        Start 192: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix
270/347 Test #175: pyinit::py3.10_command_import_neuron .....................................   Passed    0.48 sec
        Start 194: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix
271/347 Test #184: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ...........................   Passed    0.28 sec
        Start 196: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix
272/347 Test #186: pyinit::nrniv_pydef_python_check_sys_exec_prefix .........................   Passed    0.29 sec
        Start 198: pyinit::nrniv_pydef_python_check_sys_stderr.encoding
273/347 Test #188: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ......................   Passed    0.31 sec
        Start 200: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding
274/347 Test #190: pyinit::nrniv_pydef_python_check_sys_base_prefix .........................   Passed    0.31 sec
        Start 202: pyinit::nrniv_pydef_python_check_sys_stdin.encoding
275/347 Test #192: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ......................   Passed    0.33 sec
        Start 204: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding
276/347 Test #194: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix ....................   Passed    0.31 sec
        Start 206: pyinit::nrniv_pydef_python_check_sys_stdout.encoding
277/347 Test #196: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix .................   Passed    0.30 sec
        Start 208: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding
278/347 Test #200: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding ..................   Passed    0.29 sec
        Start 210: pyinit::nrniv_pydef_python_command_import_neuron
279/347 Test #202: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ......................   Passed    0.29 sec
        Start 211: pyinit::pydef_command_import_neuron
280/347 Test #206: pyinit::nrniv_pydef_python_check_sys_stdout.encoding .....................   Passed    0.30 sec
        Start 212: pyinit::nrniv_pydef_hoc_command_nrnpython
281/347 Test #198: pyinit::nrniv_pydef_python_check_sys_stderr.encoding .....................   Passed    0.40 sec
        Start 213: external_nrntest
282/347 Test #204: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ...................   Passed    0.36 sec
        Start 245: testcorenrn_bbcore::compare_results
283/347 Test #208: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding ..................   Passed    0.22 sec
        Start 255: testcorenrn_conc::compare_results
284/347 Test #255: testcorenrn_conc::compare_results ........................................   Passed    0.15 sec
        Start 265: testcorenrn_deriv::compare_results
285/347 Test #245: testcorenrn_bbcore::compare_results ......................................   Passed    0.18 sec
        Start 275: testcorenrn_gf::compare_results
286/347 Test #212: pyinit::nrniv_pydef_hoc_command_nrnpython ................................   Passed    0.29 sec
        Start 285: testcorenrn_kin::compare_results
287/347 Test #275: testcorenrn_gf::compare_results ..........................................   Passed    0.14 sec
        Start 293: testcorenrn_patstim::compare_results
288/347 Test #265: testcorenrn_deriv::compare_results .......................................   Passed    0.15 sec
        Start 303: testcorenrn_vecplay::compare_results
289/347 Test #285: testcorenrn_kin::compare_results .........................................   Passed    0.14 sec
        Start 323: testcorenrn_watch::compare_results
290/347 Test #303: testcorenrn_vecplay::compare_results .....................................   Passed    0.16 sec
        Start 326: testcorenrn_netstimdirect::compare_results
291/347 Test #293: testcorenrn_patstim::compare_results .....................................   Passed    0.17 sec
292/347 Test #323: testcorenrn_watch::compare_results .......................................   Passed    0.15 sec
        Start  69: parallel::partrans
293/347 Test #210: pyinit::nrniv_pydef_python_command_import_neuron .........................   Passed    0.67 sec
294/347 Test #211: pyinit::pydef_command_import_neuron ......................................   Passed    0.66 sec
        Start  70: parallel::netpar
295/347 Test #326: testcorenrn_netstimdirect::compare_results ...............................   Passed    0.07 sec
296/347 Test  #70: parallel::netpar .........................................................   Passed    2.29 sec
        Start  71: parallel::bas
297/347 Test  #69: parallel::partrans .......................................................   Passed    2.36 sec
        Start  72: parallel::nrntest_fast
298/347 Test  #71: parallel::bas ............................................................   Passed    2.82 sec
        Start  93: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
299/347 Test  #72: parallel::nrntest_fast ...................................................   Passed    3.93 sec
        Start  94: coreneuron_modtests::inputpresyn_py_cpu
300/347 Test  #93: coreneuron_modtests::spikes_mpi_file_mode_py_cpu .........................   Passed    4.63 sec
        Start 114: coreneuron_modtests::spikes_mpi_file_mode_py_gpu
301/347 Test  #94: coreneuron_modtests::inputpresyn_py_cpu ..................................   Passed    4.59 sec
        Start 115: coreneuron_modtests::inputpresyn_py_gpu
302/347 Test #114: coreneuron_modtests::spikes_mpi_file_mode_py_gpu .........................   Passed    2.19 sec
303/347 Test #115: coreneuron_modtests::inputpresyn_py_gpu ..................................   Passed    6.15 sec
        Start 308: testcorenrn_vecevent::coreneuron_gpu_offline::preparation
304/347 Test #308: testcorenrn_vecevent::coreneuron_gpu_offline::preparation ................   Passed    1.70 sec
        Start 312: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
305/347 Test #312: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................   Passed    2.67 sec
        Start 342: olfactory-bulb-3d::neuron::preparation
306/347 Test #342: olfactory-bulb-3d::neuron::preparation ...................................   Passed    0.03 sec
        Start 344: olfactory-bulb-3d::coreneuron_gpu_online::preparation
307/347 Test #344: olfactory-bulb-3d::coreneuron_gpu_online::preparation ....................   Passed    0.01 sec
        Start 346: olfactory-bulb-3d::coreneuron_cpu_online::preparation
308/347 Test #346: olfactory-bulb-3d::coreneuron_cpu_online::preparation ....................   Passed    0.02 sec
        Start 214: reduced_dentate::neuron
309/347 Test #329: channel_benchmark_hippo::neuron ..........................................   Passed  116.29 sec
310/347 Test #330: channel_benchmark_hippo::coreneuron_gpu_online ...........................   Passed  117.92 sec
311/347 Test #331: channel_benchmark_hippo::coreneuron_gpu_filemode .........................   Passed  117.71 sec
        Start 215: reduced_dentate::coreneuron_cpu
312/347 Test #335: channel_benchmark_sscx::neuron ...........................................   Passed  108.99 sec
313/347 Test #336: channel_benchmark_sscx::coreneuron_gpu_online ............................   Passed  106.68 sec
314/347 Test #332: channel_benchmark_hippo::coreneuron_cpu_online ...........................   Passed  119.11 sec
315/347 Test #333: channel_benchmark_hippo::coreneuron_cpu_filemode .........................   Passed  116.51 sec
        Start 216: reduced_dentate::coreneuron_gpu
316/347 Test #337: channel_benchmark_sscx::coreneuron_gpu_filemode ..........................   Passed  107.84 sec
        Start 334: channel_benchmark_hippo::compare_results
317/347 Test #334: channel_benchmark_hippo::compare_results .................................   Passed    0.06 sec
318/347 Test #214: reduced_dentate::neuron ..................................................   Passed   27.69 sec
        Start 304: testcorenrn_vecevent::neuron
319/347 Test #304: testcorenrn_vecevent::neuron .............................................   Passed    1.85 sec
        Start 305: testcorenrn_vecevent::coreneuron_gpu_online
320/347 Test #305: testcorenrn_vecevent::coreneuron_gpu_online ..............................   Passed    6.21 sec
        Start 306: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate
321/347 Test #215: reduced_dentate::coreneuron_cpu ..........................................   Passed   33.56 sec
        Start 307: testcorenrn_vecevent::coreneuron_gpu_offline
322/347 Test #216: reduced_dentate::coreneuron_gpu ..........................................   Passed   31.16 sec
        Start 309: testcorenrn_vecevent::coreneuron_cpu_online
        Start 217: reduced_dentate::compare_results
323/347 Test #217: reduced_dentate::compare_results .........................................   Passed    0.06 sec
324/347 Test #307: testcorenrn_vecevent::coreneuron_gpu_offline .............................   Passed    6.42 sec
        Start 310: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
325/347 Test #306: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate .............   Passed   11.07 sec
        Start 311: testcorenrn_vecevent::coreneuron_cpu_offline
326/347 Test #309: testcorenrn_vecevent::coreneuron_cpu_online ..............................   Passed    6.13 sec
        Start 341: olfactory-bulb-3d::neuron
327/347 Test #311: testcorenrn_vecevent::coreneuron_cpu_offline .............................   Passed    2.25 sec
        Start 343: olfactory-bulb-3d::coreneuron_gpu_online
328/347 Test #310: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .............   Passed    3.54 sec
        Start 345: olfactory-bulb-3d::coreneuron_cpu_online
        Start 313: testcorenrn_vecevent::compare_results
329/347 Test #313: testcorenrn_vecevent::compare_results ....................................   Passed    0.09 sec
330/347 Test #339: channel_benchmark_sscx::coreneuron_cpu_filemode ..........................   Passed  109.87 sec
331/347 Test #338: channel_benchmark_sscx::coreneuron_cpu_online ............................   Passed  110.47 sec
        Start 340: channel_benchmark_sscx::compare_results
332/347 Test #340: channel_benchmark_sscx::compare_results ..................................   Passed    0.06 sec
333/347 Test #343: olfactory-bulb-3d::coreneuron_gpu_online .................................   Passed   31.96 sec
        Start 226: external_ringtest::coreneuron_cpu_mpi_threads
334/347 Test #226: external_ringtest::coreneuron_cpu_mpi_threads ............................   Passed    2.51 sec
        Start 227: external_ringtest::coreneuron_cpu_mpi_threads_python
335/347 Test #227: external_ringtest::coreneuron_cpu_mpi_threads_python .....................   Passed    2.51 sec
        Start 233: external_ringtest::coreneuron_gpu_mpi_threads
336/347 Test #233: external_ringtest::coreneuron_gpu_mpi_threads ............................   Passed    3.95 sec
        Start 234: external_ringtest::coreneuron_gpu_mpi_threads_python
337/347 Test #234: external_ringtest::coreneuron_gpu_mpi_threads_python .....................   Passed    3.93 sec
        Start  68: parallel::subworld
        Start 235: external_ringtest::compare_results
338/347 Test #235: external_ringtest::compare_results .......................................   Passed    0.25 sec
339/347 Test #345: olfactory-bulb-3d::coreneuron_cpu_online .................................   Passed   46.86 sec
340/347 Test  #68: parallel::subworld .......................................................   Passed    4.34 sec
        Start  95: coreneuron_modtests::test_subworlds_py_cpu
341/347 Test  #95: coreneuron_modtests::test_subworlds_py_cpu ...............................   Passed    6.11 sec
        Start 116: coreneuron_modtests::test_subworlds_py_gpu
342/347 Test #341: olfactory-bulb-3d::neuron ................................................   Passed   56.17 sec
        Start 347: olfactory-bulb-3d::compare_results
343/347 Test #347: olfactory-bulb-3d::compare_results .......................................   Passed    0.48 sec
344/347 Test #116: coreneuron_modtests::test_subworlds_py_gpu ...............................   Passed    7.29 sec
345/347 Test #213: external_nrntest .........................................................   Passed  143.18 sec
        Start 327: tqperf::coreneuron_special
346/347 Test #327: tqperf::coreneuron_special ...............................................   Passed   11.14 sec
        Start 328: tqperf::coreneuron_python
347/347 Test #328: tqperf::coreneuron_python ................................................   Passed   11.46 sec

100% tests passed, 0 tests failed out of 347

Total Test time (real) = 291.27 sec
$ cp -r Testing/ ${CI_PROJECT_DIR}/
$ module load unstable unit-test-translator
Autoloading python/3.10.8
$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml
$ exit ${i_am_a_failure}
section_end:1682532089:step_script
section_start:1682532089:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=23732 revision=58ba2b95 version=14.2.0
initial_environment.env: found 1 matching files and directories 
Testing/: found 7 matching files and directories   
Uploading artifacts as "archive" to coordinator... ok  id=674229 responseStatus=201 Created token=64_NHUJF
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=23851 revision=58ba2b95 version=14.2.0
ctest.xml: found 1 matching files and directories  
Uploading artifacts as "junit" to coordinator... ok  id=674229 responseStatus=201 Created token=64_NHUJF
section_end:1682532091:upload_artifacts_on_success
section_start:1682532091:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1682532092:cleanup_file_variables
Job succeeded

test-neuron-nmodl-intel-legacy.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
sect

test-neuron-nmodl-intel-shared.txt

test-neuron-nmodl-nvhpc-acc-legacy.txt

test-neuron-nmodl-nvhpc-acc-shared.txt

test-neuron-nmodl-nvhpc-omp-legacy.txt

test-neuron-nmodl-nvhpc-omp.txt