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Created October 26, 2023 01:52
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/164985 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2593.
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Running with gitlab-runner 15.4.0 (43b2dc3d)
 on macos-arm64 vGzz-bdp
section_start:1698281492:resolve_secrets Resolving secrets
section_end:1698281492:resolve_secrets section_start:1698281492:prepare_executor Preparing the "shell" executor
Using Shell executor...
section_end:1698281492:prepare_executor section_start:1698281492:prepare_script Preparing environment
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1698281493:prepare_script section_start:1698281493:get_sources Getting source from Git repository
Fetching changes with git depth set to 20...
Initialized empty Git repository in /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/.git/
Created fresh repository.
Checking out 8e56a392 as update_find_parent_seg...
Skipping Git submodules setup
section_end:1698281494:get_sources section_start:1698281494:restore_cache Restoring cache
Checking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-update_find_parent_seg-1-non_protected...
Runtime platform  arch=arm64 os=darwin pid=96352 revision=43b2dc3d version=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.
Successfully extracted cache
section_end:1698281496:restore_cache section_start:1698281496:step_script Executing "step_script" stage of the job script
$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command
$ real_python=$(python3 resolve_shim.py)
$ echo "python3=$(command -v python3) is really ${real_python}"
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.8/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv
$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (22.2.2)
Collecting pip
Using cached pip-23.3.1-py3-none-any.whl (2.1 MB)
Collecting wheel
Using cached wheel-0.41.2-py3-none-any.whl (64 kB)
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (65.4.1)
Collecting setuptools
Using cached setuptools-68.2.2-py3-none-any.whl (807 kB)
Collecting setuptools_scm
Using cached setuptools_scm-8.0.4-py3-none-any.whl (42 kB)
Collecting scikit-build
Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB)
Collecting matplotlib
Using cached matplotlib-3.8.0-cp310-cp310-macosx_11_0_arm64.whl (7.5 MB)
Collecting bokeh<3
Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB)
Collecting ipython
Using cached ipython-8.16.1-py3-none-any.whl (806 kB)
Collecting cython<3
Using cached Cython-0.29.36-py2.py3-none-any.whl (988 kB)
Collecting packaging
Using cached packaging-23.2-py3-none-any.whl (53 kB)
Collecting pytest
Using cached pytest-7.4.3-py3-none-any.whl (325 kB)
Collecting pytest-cov
Using cached pytest_cov-4.1.0-py3-none-any.whl (21 kB)
Collecting mpi4py
Using cached mpi4py-3.1.5-cp310-cp310-macosx_12_0_arm64.whl
Collecting numpy
Using cached numpy-1.26.1-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB)
Collecting find_libpython
Using cached find_libpython-0.3.1-py3-none-any.whl (8.4 kB)
Collecting typing-extensions
Using cached typing_extensions-4.8.0-py3-none-any.whl (31 kB)
Collecting tomli>=1
Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Collecting distro
Using cached distro-1.8.0-py3-none-any.whl (20 kB)
Collecting fonttools>=4.22.0
Using cached fonttools-4.43.1-cp310-cp310-macosx_10_9_universal2.whl (2.7 MB)
Collecting contourpy>=1.0.1
Using cached contourpy-1.1.1-cp310-cp310-macosx_11_0_arm64.whl (232 kB)
Collecting pyparsing>=2.3.1
Using cached pyparsing-3.1.1-py3-none-any.whl (103 kB)
Collecting kiwisolver>=1.0.1
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB)
Collecting cycler>=0.10
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Collecting python-dateutil>=2.7
Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
Collecting pillow>=6.2.0
Using cached Pillow-10.1.0-cp310-cp310-macosx_11_0_arm64.whl (3.3 MB)
Collecting Jinja2>=2.9
Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB)
Collecting PyYAML>=3.10
Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl (169 kB)
Collecting tornado>=5.1
Using cached tornado-6.3.3-cp38-abi3-macosx_10_9_universal2.whl (425 kB)
Collecting pexpect>4.3
Using cached pexpect-4.8.0-py2.py3-none-any.whl (59 kB)
Collecting appnope
Using cached appnope-0.1.3-py2.py3-none-any.whl (4.4 kB)
Collecting backcall
Using cached backcall-0.2.0-py2.py3-none-any.whl (11 kB)
Collecting traitlets>=5
Using cached traitlets-5.12.0-py3-none-any.whl (84 kB)
Collecting stack-data
Using cached stack_data-0.6.3-py3-none-any.whl (24 kB)
Collecting matplotlib-inline
Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB)
Collecting exceptiongroup
Using cached exceptiongroup-1.1.3-py3-none-any.whl (14 kB)
Collecting prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30
Using cached prompt_toolkit-3.0.39-py3-none-any.whl (385 kB)
Collecting pygments>=2.4.0
Using cached Pygments-2.16.1-py3-none-any.whl (1.2 MB)
Collecting decorator
Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB)
Collecting jedi>=0.16
Using cached jedi-0.19.1-py2.py3-none-any.whl (1.6 MB)
Collecting pickleshare
Using cached pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB)
Collecting iniconfig
Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Collecting pluggy<2.0,>=0.12
Using cached pluggy-1.3.0-py3-none-any.whl (18 kB)
Collecting coverage[toml]>=5.2.1
Using cached coverage-7.3.2-cp310-cp310-macosx_11_0_arm64.whl (200 kB)
Collecting parso<0.9.0,>=0.8.3
Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB)
Collecting MarkupSafe>=2.0
Using cached MarkupSafe-2.1.3-cp310-cp310-macosx_10_9_universal2.whl (17 kB)
Collecting ptyprocess>=0.5
Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Collecting wcwidth
Using cached wcwidth-0.2.8-py2.py3-none-any.whl (31 kB)
Collecting six>=1.5
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting executing>=1.2.0
Using cached executing-2.0.0-py2.py3-none-any.whl (24 kB)
Collecting pure-eval
Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB)
Collecting asttokens>=2.1.0
Using cached asttokens-2.4.0-py2.py3-none-any.whl (27 kB)
Installing collected packages: wcwidth, pure-eval, ptyprocess, pickleshare, find_libpython, executing, backcall, appnope, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython
Attempting uninstall: setuptools
Found existing installation: setuptools 65.4.1
Uninstalling setuptools-65.4.1:
Successfully uninstalled setuptools-65.4.1
Attempting uninstall: pip
Found existing installation: pip 22.2.2
Uninstalling pip-22.2.2:
Successfully uninstalled pip-22.2.2
Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.3 PyYAML-6.0.1 appnope-0.1.3 asttokens-2.4.0 backcall-0.2.0 bokeh-2.4.3 contourpy-1.1.1 coverage-7.3.2 cycler-0.12.1 cython-0.29.36 decorator-5.1.1 distro-1.8.0 exceptiongroup-1.1.3 executing-2.0.0 find_libpython-0.3.1 fonttools-4.43.1 iniconfig-2.0.0 ipython-8.16.1 jedi-0.19.1 kiwisolver-1.4.5 matplotlib-3.8.0 matplotlib-inline-0.1.6 mpi4py-3.1.5 numpy-1.26.1 packaging-23.2 parso-0.8.3 pexpect-4.8.0 pickleshare-0.7.5 pillow-10.1.0 pip-23.3.1 pluggy-1.3.0 prompt-toolkit-3.0.39 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.16.1 pyparsing-3.1.1 pytest-7.4.3 pytest-cov-4.1.0 python-dateutil-2.8.2 scikit-build-0.17.6 setuptools-68.2.2 setuptools_scm-8.0.4 six-1.16.0 stack-data-0.6.3 tomli-2.0.1 tornado-6.3.3 traitlets-5.12.0 typing-extensions-4.8.0 wcwidth-0.2.8 wheel-0.41.2
$ git submodule update --init --recursive --force --depth 1 -- external/nmodl
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl'
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/nmodl'...
From https://github.com/BlueBrain/nmodl
* branch f180a2d45aabc0d8630b2a7fc8d90c1d8fd07e26 -> FETCH_HEAD
Submodule path 'external/nmodl': checked out 'f180a2d45aabc0d8630b2a7fc8d90c1d8fd07e26'
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions'
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2'
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11'
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen'
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt'
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json'
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11'
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog'
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'...
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/nmodl/ext/catch2'...
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/nmodl/ext/cli11'...
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/nmodl/ext/eigen'...
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/nmodl/ext/fmt'...
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/nmodl/ext/json'...
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/nmodl/ext/pybind11'...
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/nmodl/ext/spdlog'...
From https://github.com/BlueBrain/hpc-coding-conventions
* branch f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d'
From https://github.com/catchorg/Catch2
* branch 3f0283de7a9c43200033da996ff9093be3ac84dc -> FETCH_HEAD
Submodule path 'external/nmodl/ext/catch2': checked out '3f0283de7a9c43200033da996ff9093be3ac84dc'
From https://github.com/CLIUtils/CLI11
* branch b9be5b9444772324459989177108a6a65b8b2769 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/cli11': checked out 'b9be5b9444772324459989177108a6a65b8b2769'
From https://gitlab.com/libeigen/eigen
* branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
From https://github.com/fmtlib/fmt
* branch a33701196adfad74917046096bf5a2aa0ab0bb50 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/fmt': checked out 'a33701196adfad74917046096bf5a2aa0ab0bb50'
From https://github.com/nlohmann/json
* branch 4f8fba14066156b73f1189a2b8bd568bde5284c5 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/json': checked out '4f8fba14066156b73f1189a2b8bd568bde5284c5'
From https://github.com/pybind/pybind11
* branch 914c06fb252b6cc3727d0eedab6736e88a3fcb01 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/pybind11': checked out '914c06fb252b6cc3727d0eedab6736e88a3fcb01'
From https://github.com/gabime/spdlog
* branch 76fb40d95455f249bd70824ecfcae7a8f0930fa3 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/spdlog': checked out '76fb40d95455f249bd70824ecfcae7a8f0930fa3'
$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt
Requirement already satisfied: Jinja2>=2.9.3 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 1)) (3.1.2)
Requirement already satisfied: PyYAML>=3.13 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 2)) (6.0.1)
Requirement already satisfied: pytest in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 3)) (7.4.3)
Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 4)) (4.1.0)
Collecting sympy (from -r external/nmodl/requirements.txt (line 5))
Using cached sympy-1.12-py3-none-any.whl (5.7 MB)
Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 6)) (1.26.1)
Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 7)) (0.3.1)
Requirement already satisfied: scikit-build in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 8)) (0.17.6)
Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 1)) (2.1.3)
Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.0)
Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (23.2)
Requirement already satisfied: pluggy<2.0,>=0.12 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.3.0)
Requirement already satisfied: exceptiongroup>=1.0.0rc8 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.1.3)
Requirement already satisfied: tomli>=1.0.0 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.1)
Requirement already satisfied: coverage>=5.2.1 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=5.2.1->pytest-cov->-r external/nmodl/requirements.txt (line 4)) (7.3.2)
Collecting mpmath>=0.19 (from sympy->-r external/nmodl/requirements.txt (line 5))
Using cached mpmath-1.3.0-py3-none-any.whl (536 kB)
Requirement already satisfied: distro in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (1.8.0)
Requirement already satisfied: setuptools>=42.0.0 in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (68.2.2)
Requirement already satisfied: wheel>=0.32.0 in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (0.41.2)
Installing collected packages: mpmath, sympy
Successfully installed mpmath-1.3.0 sympy-1.12
$ source ./venv/bin/activate
$ export PYTHON=${PWD}/venv/bin/python
$ ${PYTHON} --version
Python 3.10.8
$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"
$ export CXX=${CXX:-g++}
$ export CC=${CC:-gcc}
$ brew install flex bison
Warning: flex 2.6.4_2 is already installed and up-to-date.
To reinstall 2.6.4_2, run:
brew reinstall flex
Warning: bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
brew reinstall bison
$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"
$ export INSTALL_DIR=$(pwd)/install
$ echo $LANG
$ echo $LC_ALL
$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")
$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'
$ cmake_args=(-G Ninja)
$ if [[ -n "${sanitizer}" ]]; then
$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))
$ fi
$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})
$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")
$ mkdir build && cd build
$ echo "Building with ${cmake_args[@]}"
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/venv/bin/python
$ cmake .. "${cmake_args[@]}"
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- Sub-module : missing external/coding-conventions : running git submodule update --init
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions'
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/coding-conventions'...
Submodule path 'external/coding-conventions': checked out '80a2c9013463b89b5c426e18403e9a2f87c59a00'
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123'
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/Random123'...
From https://github.com/BlueBrain/Random123
* branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1'
-- 3rd party project: using Random123 from "external/Random123"
-- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen
Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen'
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/eigen'...
From https://gitlab.com/libeigen/eigen
* branch 328b5f90858f93344ebc1484df8cadfd2a5da6dd -> FETCH_HEAD
Submodule path 'external/eigen': checked out '328b5f90858f93344ebc1484df8cadfd2a5da6dd'
-- 3rd party project: using eigen from "external/eigen"
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2")
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6")
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1")
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Detected OpenMPI 4.1.4
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11'
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/CLI11'...
From https://github.com/CLIUtils/CLI11
* branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2'
-- 3rd party project: using CLI11 from "external/CLI11"
-- Building CoreNEURON
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)")
-- Found Perl: /usr/bin/perl (found version "5.30.3")
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH)
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/nmodl
-- CHECKING FOR FLEX/BISON
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0")
-- Adding Flex include path as : /opt/homebrew/opt/flex/include/
-- NMODL_TEST_FORMATTING: OFF
-- NMODL_GIT_HOOKS: OFF
-- NMODL_GIT_COMMIT_HOOKS:
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg
-- NMODL_STATIC_ANALYSIS: OFF
-- NMODL_TEST_STATIC_ANALYSIS: OFF
-- 3rd party project: using eigen from "ext/eigen"
-- 3rd party project: using fmt from "ext/fmt"
-- Module support is disabled.
-- Version: 9.1.0
-- Build type: Custom
-- CXX_STANDARD: 17
-- Required features: cxx_variadic_templates
-- 3rd party project: using json from "ext/json"
-- Using the single-header code from /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/nmodl/ext/json/single_include/
-- 3rd party project: using pybind11 from "ext/pybind11"
-- pybind11 v2.9.2
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/venv/bin/python (found version "3.10.8")
-- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- 3rd party project: using spdlog from "ext/spdlog"
-- Build spdlog: 1.10.0
-- Build type: Custom
-- CHECKING FOR PYTHON
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.8", minimum required is "3.8")
--
-- Configured NMODL 0.0 (f180a2d 2023-09-21 17:15:39 +0200)
--
-- You can now build NMODL using:
-- cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------------+--------------------------------------------------------
-- Target | Description
-- --------------------+--------------------------------------------------------
-- test | Run unit tests
-- install | Will install NMODL to: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install
-- --------------------+--------------------------------------------------------
-- Build option | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER | /usr/bin/g++
-- COMPILE FLAGS | -O1 -g
-- Build Type | Custom
-- Legacy Units | OFF
-- Python Bindings | ON
-- Flex | /opt/homebrew/opt/flex/bin/flex
-- Bison | /opt/homebrew/opt/bison/bin/bison
-- Python | /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/venv/bin/python
-- Linked against | TRUE
-- --------------------+--------------------------------------------------------
-- See documentation : https://github.com/BlueBrain/nmodl/
-- --------------------+--------------------------------------------------------
--
--
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
-- Build option | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER | /usr/bin/g++
-- COMPILE FLAGS | -O1 -g -std=c++17 -DCORENEURON_BUILD -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type | SHARED
-- MPI | ON
-- DYNAMIC | OFF
-- INC | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include
-- OpenMP | ON
-- NMODL PATH | /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/bin/nmodl
-- NMODL FLAGS |
-- GPU Support | OFF
-- Auto Timeout | ON
-- Wrap exp() | OFF
-- SplayTree Queue | ON
-- NetReceive Buffer | ON
-- Caliper | OFF
-- Likwid | OFF
-- Unit Tests | ON
-- Reporting | OFF
-- --------------------+--------------------------------------------------------
--
Extracting link flags from target 'nrngnu', beware that this can be fragile. Got:
Extracting link flags from target 'sparse13', beware that this can be fragile. Got:
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got:
Generating link flags from path /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib
Generating link flags from path /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
-- Sub-module : missing /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/catch2 : running git submodule update --init
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2'
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/external/catch2'...
Submodule path 'external/catch2': checked out 'c4e3767e265808590986d5db6ca1b5532a7f3d13'
-- Found Python module 'pytest' with version(s): 7.4.3
-- Found Python module 'pytest_cov' with version(s): 4.1.0
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata'
Cloning into '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/test/rxd/testdata'...
From https://github.com/neuronsimulator/rxdtestdata
* branch 30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD
Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58'
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.5
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.5
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- Could NOT find OpenSSL, try to set the path to OpenSSL root folder in the system variable OPENSSL_ROOT_DIR (missing: OPENSSL_CRYPTO_LIBRARY OPENSSL_INCLUDE_DIR)
-- Skipping tqperf test as OpenSSL package not found
--
-- Configured NEURON 9.0.0
--
-- You can now build NEURON using:
-- cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
-- Target | Description
-- --------------+--------------------------------------------------------------
-- install | Will install NEURON to: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install
-- | Change the install location of NEURON using:
-- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
-- Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER | /usr/bin/gcc
-- CXX COMPILER | /usr/bin/g++
-- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast)
-- COMPILE FLAGS | -O1 -g -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Shared | ON
-- MPI | ON
-- DYNAMIC | OFF
-- INC | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include
-- LIB | /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib
-- Python | ON
-- DYNAMIC | OFF
-- MODULE | ON
-- python3.10 (default)
-- EXE | /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/venv/bin/python
-- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10
-- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D | OFF
-- Interviews | OFF
-- CoreNEURON | ON
-- PATH | /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/coreneuron
-- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib
-- Tests | ON
-- --------------+--------------------------------------------------------------
-- See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
--
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build
$ ccache -z
Statistics zeroed
$ ccache -vs 2>/dev/null
Cache directory: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/ccache
Config file: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf
Stats updated: Thu Oct 26 02:52:43 2023
Local storage:
Cache size (GB): 0.14 / 5.00 ( 2.81%)
Files: 951
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ cmake --build . --parallel
[0/2] Re-checking globbed directories...
[1/1771] Generating share/nrn/demo/cycle.hoc
[2/1771] Generating share/nrn/demo/demo.ses
[3/1771] Generating share/nrn/demo/d3init.hoc
[4/1771] Generating share/nrn/demo/demo.hoc
[5/1771] Generating share/nrn/demo/dend3/control.hoc
[6/1771] Generating share/nrn/demo/dend3/dend3.nrn
[7/1771] Generating share/nrn/demo/dend3.ses
[8/1771] Generating share/nrn/demo/dend3/syn3.hoc
[9/1771] Generating share/nrn/demo/dynchan.ses
[10/1771] Generating share/nrn/demo/dynclamp.ses
[11/1771] Generating share/nrn/demo/nomodel.hoc
[12/1771] Generating share/nrn/demo/hh.hoc
[13/1771] Generating share/nrn/demo/dynclamp.hoc
[14/1771] Generating share/nrn/demo/hh.ses
[15/1771] Update hh.mod for CoreNEURON compatibility
[16/1771] Generating share/nrn/demo/pyramid.nrn
[17/1771] Generating share/nrn/demo/pyramid.ses
[18/1771] Generating share/nrn/demo/release.hoc
[19/1771] Generating share/nrn/demo/reconst.hoc
[20/1771] Generating share/nrn/demo/release.ses
[21/1771] Generating share/nrn/demo/release/cachan1.mod
[22/1771] Generating share/nrn/demo/release/cabpump.mod
[23/1771] Generating share/nrn/demo/release/camchan.mod
[24/1771] Generating share/nrn/demo/release/nachan.mod
[25/1771] Generating share/nrn/demo/release/capump.mod
[26/1771] Generating share/nrn/demo/release/khhchan.mod
[27/1771] Generating share/nrn/demo/release/nacaex.mod
[28/1771] Generating share/nrn/demo/release/invlfire.mod
[29/1771] Generating share/nrn/demo/release/release.mod
[30/1771] Generating share/nrn/demo/sync/cell.hoc
[31/1771] Generating share/nrn/demo/singhh.ses
[32/1771] Generating share/nrn/demo/singhh.hoc
[33/1771] Generating share/nrn/demo/sync/demosync.hoc
[34/1771] Generating share/nrn/demo/sync/init.hoc
[35/1771] Generating share/nrn/demo/sync/spkplot.hoc
[36/1771] Generating share/nrn/demo/singhhchan.hoc
[37/1771] Generating share/nrn/demo/sync/start.ses
[38/1771] Generating share/nrn/demo/sync/synchronize.hoc
[39/1771] Generating share/nrn/demo/testca.hoc
[40/1771] Generating share/nrn/lib/auditscripts/hocaudit.sh
[41/1771] Generating share/nrn/lib/auditscripts/gettarname
[42/1771] Generating share/nrn/lib/auditscripts/notes
[43/1771] Generating share/nrn/lib/cleanup
[44/1771] Generating share/nrn/lib/hoc/atoltool.hoc
[45/1771] Generating share/nrn/lib/auditscripts/retrieve.sh
[46/1771] Generating share/nrn/lib/auditscripts/saveaudit
[47/1771] Generating share/nrn/lib/helpdict
[48/1771] Generating share/nrn/lib/hoc/attshape.hoc
[49/1771] Generating share/nrn/lib/hoc/celbild.hoc
[50/1771] Generating share/nrn/lib/hoc/celbild/celbild1.hoc
[51/1771] Generating share/nrn/lib/hoc/celbild/celmemb.hoc
[52/1771] Generating share/nrn/lib/hoc/celbild/celset.hoc
[53/1771] Generating share/nrn/lib/hoc/celbild/celgeom.hoc
[54/1771] Generating share/nrn/lib/hoc/celbild/celmang.hoc
[55/1771] Generating share/nrn/lib/hoc/celbild/inhomofn.hoc
[56/1771] Generating share/nrn/lib/hoc/binfo.hoc
[57/1771] Generating share/nrn/lib/hoc/celbild/celtopol.hoc
[58/1771] Generating share/nrn/lib/hoc/celbild/psubset.hoc
[59/1771] Generating share/nrn/lib/hoc/chanbild/chanbild1.hoc
[60/1771] Generating share/nrn/lib/hoc/chanbild/const.hoc
[61/1771] Generating share/nrn/lib/hoc/chanbild/exp.hoc
[62/1771] Generating share/nrn/lib/hoc/chanbild/ksgate.hoc
[63/1771] Generating share/nrn/lib/hoc/chanbild.hoc
[64/1771] Generating share/nrn/lib/hoc/chanbild/gategui.hoc
[65/1771] Generating share/nrn/lib/hoc/chanbild/kschanbg.hoc
[66/1771] Generating share/nrn/lib/hoc/chanbild/kstgui.hoc
[67/1771] Generating share/nrn/lib/hoc/chanbild/ksstate.hoc
[68/1771] Generating share/nrn/lib/hoc/chanbild/kstrans.hoc
[69/1771] Generating share/nrn/lib/hoc/chanbild/sigmoid.hoc
[70/1771] Generating share/nrn/lib/hoc/family.hoc
[71/1771] Generating share/nrn/lib/hoc/chanbild/linoid.hoc
[72/1771] Generating share/nrn/lib/hoc/chanbild/table.hoc
[73/1771] Generating share/nrn/lib/hoc/electrod.hoc
[74/1771] Generating share/nrn/lib/hoc/chanbild/properties.hoc
[75/1771] Generating share/nrn/lib/hoc/corenrn.hoc
[76/1771] Generating share/nrn/lib/hoc/funfit.hoc
[77/1771] Generating share/nrn/lib/hoc/gatherv.hoc
[78/1771] Generating share/nrn/lib/hoc/grapher.hoc
[79/1771] Generating share/nrn/lib/hoc/import3d.hoc
[80/1771] Generating share/nrn/lib/hoc/impedanx.hoc
[81/1771] Generating share/nrn/lib/hoc/impedanc.hoc
[82/1771] Generating share/nrn/lib/hoc/import3d/import3d_gui.hoc
[83/1771] Generating share/nrn/lib/hoc/import3d/import3d_sec.hoc
[84/1771] Generating share/nrn/lib/hoc/import3d/read_morphml.hoc
[85/1771] Generating share/nrn/lib/hoc/import3d/read_nlcda.hoc
[86/1771] Generating share/nrn/lib/hoc/import3d/read_nlcda3.hoc
[87/1771] Generating share/nrn/lib/hoc/import3d/read_swc.hoc
[88/1771] Generating share/nrn/lib/hoc/impratio.hoc
[89/1771] Generating share/nrn/lib/hoc/import3d/read_nts.hoc
[90/1771] Generating share/nrn/lib/hoc/lincir/lincir1.hoc
[91/1771] Generating share/nrn/lib/hoc/inserter.hoc
[92/1771] Generating share/nrn/lib/hoc/lincir.hoc
[93/1771] Generating share/nrn/lib/hoc/lincir/lingraph.hoc
[94/1771] Generating share/nrn/lib/hoc/lincir/elmbase.hoc
[95/1771] Generating share/nrn/lib/hoc/lincir/linmech.hoc
[96/1771] Generating share/nrn/lib/hoc/loadbal.hoc
[97/1771] Generating share/nrn/lib/hoc/mkcurve.hoc
[98/1771] Generating share/nrn/lib/hoc/modlunit.hoc
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[620/1771] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/list.cpp.o
[621/1771] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/model.cpp.o
[622/1771] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/corenrn_parameters.cpp.o
[623/1771] cd /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[624/1771] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/passn.cpp.o
[625/1771] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/symbol.cpp.o
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[627/1771] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units1.cpp.o
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[629/1771] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/spdlog.cpp.o
[630/1771] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/version.cpp.o
[631/1771] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/consist.cpp.o
[632/1771] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/discrete.cpp.o
[633/1771] Linking CXX static library lib/libspdlog.a
[634/1771] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/deriv.cpp.o
[635/1771] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/lex.cpp.o
[636/1771] Building CXX object external/nmodl/src/pybind/CMakeFiles/pyembed.dir/pyembed.cpp.o
[637/1771] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/parse1.cpp.o
[638/1771] Linking CXX executable bin/modlunit
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[640/1771] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/list.cpp.o
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[643/1771] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/kinetic.cpp.o
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[649/1771] Linking CXX static library lib/libpywrapper.a
[650/1771] Generating ../../share/nrn/nrnmain.cpp
[651/1771] Generating ../../include/nrnmpiuse.h
[652/1771] Generating ../../include/nrncvode/nrnneosm.h
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[655/1771] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/symbol.cpp.o
[656/1771] Generating coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py
[657/1771] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/units.cpp.o
[658/1771] Generating nrniv_script.py/do_nothing.py
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[661/1771] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/version.cpp.o
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[671/1771] Generating nrniv_python_script.py_args/assert_last_args_are_foo_and_bar.py
[672/1771] Generating nrniv_py3.10_python_check_sys_path/dump_sys_attr.py
[673/1771] Generating nrniv_py3.10_nrnpython_check_sys_path/check_sys_attr.hoc
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[676/1771] Generating nrniv_py3.10_python_check_sys_prefix/check_sys_attr.py
[677/1771] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o
[678/1771] Generating nrniv_py3.10_nrnpython_check_sys_prefix/check_sys_attr.hoc
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[826/1771] Generating ../nrnoc/exp2syn.cpp
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Thread Safe
[827/1771] Generating ../nrnoc/apcount.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/apcount.cpp
Thread Safe
[828/1771] Generating ../nrnoc/feature.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/feature.cpp
Notice: VERBATIM blocks are not thread safe
[829/1771] Generating ../nrnoc/expsyn.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/expsyn.cpp
Thread Safe
[830/1771] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/symtab_visitor.cpp.o
[831/1771] Generating ../nrnoc/intfire1.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/intfire1.cpp
Thread Safe
[832/1771] Generating ../nrnoc/hh.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/hh.cpp
Thread Safe
[833/1771] Generating ../nrnoc/intfire2.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/intfire2.cpp
Thread Safe
[834/1771] Generating ../nrnoc/intfire4.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/intfire4.cpp
Thread Safe
[835/1771] Generating ../nrnoc/netstim.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/netstim.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[836/1771] Generating ../nrnoc/oclmp.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/oclmp.cpp
Thread Safe
[837/1771] Generating ../nrnoc/passive.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/passive.cpp
Thread Safe
[838/1771] Generating ../nrnoc/pattern.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/pattern.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[839/1771] Generating ../nrnoc/ppmark.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/ppmark.cpp
Thread Safe
[840/1771] Generating ../nrnoc/stim.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/stim.cpp
Thread Safe
[841/1771] Generating ../nrnoc/svclmp.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/svclmp.cpp
Thread Safe
[842/1771] Generating ../nrnoc/syn.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/syn.cpp
Thread Safe
[843/1771] Generating ../nrnoc/vclmp.cpp
Translating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnoc/vclmp.cpp
Notice: VERBATIM blocks are not thread safe
Notice: LINEAR is not thread safe.
[844/1771] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_solver_visitor.cpp.o
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[848/1771] Linking CXX static library lib/libvisitor.a
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[850/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/cbwidget.cpp.o
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WARNING: No mod files found in '/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/bin', compiling default ones only!
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
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[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
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[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
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[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
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[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
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[NMODL] [warning] :: Can not inline function call to erand
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
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[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
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[NMODL] [info] :: Running C backend code generator
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running C backend code generator
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[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Parsing Units
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[NMODL] [info] :: Running local variable rename visitor
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[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
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[1113/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/grids.cpp.o
[1114/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/rxd_intracellular.cpp.o
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[1116/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/nrnpy_nrn.cpp.o
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:54:15: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
typedef struct {
^
NPyMechObj
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:58:72: note: type is not C-compatible due to this default member initializer
neuron::container::non_owning_identifier_without_container prop_id_{};
^~
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:60:3: note: type is given name 'NPyMechObj' for linkage purposes by this typedef declaration
} NPyMechObj;
^
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:62:15: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
typedef struct {
^
NPyMechOfSegIter
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:64:24: note: type is not C-compatible due to this default member initializer
NPyMechObj* pymech_{};
^~
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:65:3: note: type is given name 'NPyMechOfSegIter' for linkage purposes by this typedef declaration
} NPyMechOfSegIter;
^
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:67:15: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
typedef struct {
^
NPyMechFunc
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:69:24: note: type is not C-compatible due to this default member initializer
NPyMechObj* pymech_{};
^~
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:71:3: note: type is given name 'NPyMechFunc' for linkage purposes by this typedef declaration
} NPyMechFunc;
^
3 warnings generated.
[1117/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/rxd_extracellular.cpp.o
[1118/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/rxd_vol.cpp.o
[1119/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/rxd_marching_cubes.cpp.o
[1120/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/rxd_llgramarea.cpp.o
[1121/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivos/listimpl.cpp.o
[1122/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivos/observe.cpp.o
[1123/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivos/resource.cpp.o
[1124/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnpython/rxd.cpp.o
[1125/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivos/regexp.cpp.o
[1126/1771] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/ivoc/nrnmain.cpp.o
[1127/1771] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o
[1128/1771] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/modlreg.cpp.o
[1129/1771] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/basic.cpp.o
[1130/1771] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocmatrix.cpp.o
[1131/1771] Linking CXX shared library lib/libnrniv.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[1132/1771] Linking CXX executable bin/nrniv
[1133/1771] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/container.cpp.o
[1134/1771] Generating inithoc.cpp
[1135/1771] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/generic_data_handle.cpp.o
[1136/1771] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn" is shallow and may cause errors
warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:creating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:creating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:creating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:creating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:creating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:creating /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:building 'neuron.hoc' extension
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../
ld: warning: -undefined dynamic_lookup may not work with chained fixups
INFO:root:running build_scripts
INFO:root:creating build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755
[1137/1771] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/mechanism.cpp.o
[1138/1771] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"
MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
-> Compiling mod_func.cpp
-> NMODL ../cabpump.mod
-> NMODL ../cachan1.mod
-> NMODL ../camchan.mod
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Thread Safe
Translating camchan.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
Thread Safe
-> NMODL ../capump.mod
-> NMODL ../invlfire.mod
-> NMODL ../khhchan.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
Thread Safe
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
Translating capump.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
Thread Safe
-> NMODL ../nacaex.mod
-> NMODL ../nachan.mod
-> NMODL ../release.mod
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
Translating nachan.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
Thread Safe
Translating release.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
-> Compiling cabpump.cpp
Thread Safe
-> Compiling cachan1.cpp
-> Compiling camchan.cpp
-> Compiling capump.cpp
-> Compiling invlfire.cpp
-> Compiling khhchan.cpp
-> Compiling nacaex.cpp
-> Compiling nachan.cpp
-> Compiling release.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1139/1771] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/utils/enumerate.cpp.o
[1140/1771] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/oc/hoc_interpreter.cpp.o
[1141/1771] Building CXX object test/coreneuron/unit/cmdline_interface/CMakeFiles/cmd_interface_test_bin.dir/test_cmdline_interface.cpp.o
[1142/1771] Linking CXX executable bin/cmd_interface_test_bin
[1143/1771] Generating nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/mcna.mod
[1144/1771] Building CXX object test/coreneuron/unit/interleave_info/CMakeFiles/interleave_info_bin.dir/check_constructors.cpp.o
[1145/1771] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/node.cpp.o
[1146/1771] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/follower.mod
[1147/1771] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/gap.mod
[1148/1771] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/name_clashes.mod
[1149/1771] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/unitstest.mod
[1150/1771] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/version_macros.mod
[1151/1771] Linking CXX executable bin/interleave_info_bin
[1152/1771] Generating nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/opaque_token.mod
[1153/1771] Generating nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/ptr.mod
[1154/1771] Building CXX object test/coreneuron/unit/alignment/CMakeFiles/alignment_test_bin.dir/alignment.cpp.o
[1155/1771] Linking CXX executable bin/alignment_test_bin
[1156/1771] Generating nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/ppxsrc.mod
[1157/1771] Building CXX object test/coreneuron/unit/queueing/CMakeFiles/queuing_test_bin.dir/test_queueing.cpp.o
[1158/1771] Linking CXX executable bin/queuing_test_bin
[1159/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/argpass.mod
[1160/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cabpump.mod
[1161/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cachan.mod
[1162/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacum.mod
[1163/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacur.mod
[1164/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadif.mod
[1165/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadifusl.mod
[1166/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagk.mod
[1167/1771] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/benchmarks/threads/test_multicore.cpp.o
[1168/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagkftab.mod
[1169/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/capmp.mod
[1170/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/expsynspine.mod
[1171/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fh.mod
[1172/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fit1.mod
[1173/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/gap.mod
[1174/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hh1.mod
[1175/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hhvect.mod
[1176/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/inatest.mod
[1177/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod
[1178/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod
[1179/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod
[1180/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod
[1181/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod
[1182/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod
[1183/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod
[1184/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod
[1185/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod
[1186/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc
[1187/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod
[1188/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod
[1189/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod
[1190/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod
[1191/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod
[1192/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod
[1193/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod
[1194/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod
[1195/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod
[1196/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod
[1197/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod
[1198/1771] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod
[1199/1771] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/atest.mod
[1200/1771] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata.inc
[1201/1771] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata.mod
[1202/1771] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_pp.mod
[1203/1771] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_ppts.mod
[1204/1771] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_ts.mod
[1205/1771] Building special[-core] for test group datahandle
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453
cfiles =
Mod files: "./opaque_token.mod" "./ptr.mod"
MODOBJS= ./opaque_token.o ./ptr.o
-> Compiling mod_func.cpp
-> NMODL .././opaque_token.mod
-> NMODL .././ptr.mod
Translating opaque_token.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp
Notice: VERBATIM blocks are not thread safe
Translating ptr.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp
Notice: Use of POINTER is not thread safe.
-> Compiling opaque_token.cpp
-> Compiling ptr.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1206/1771] Generating datahandle/datahandle_tests/test/datahandle/test_1.py
[1207/1771] Generating datahandle/datahandle_tests/test/datahandle/test_token.py
[1208/1771] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod
[1209/1771] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod
[1210/1771] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod
[1211/1771] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod
[1212/1771] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod
[1213/1771] Building CXX object test/coreneuron/unit/lfp/CMakeFiles/lfp_test_bin.dir/lfp.cpp.o
[1214/1771] Linking CXX executable bin/lfp_test_bin
[1215/1771] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod
[1216/1771] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod
[1217/1771] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod
[1218/1771] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod
[1219/1771] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod
[1220/1771] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod
[1221/1771] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod
[1222/1771] Building special[-core] for test group coverage_tests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51
cfiles =
Mod files: "./ppxsrc.mod"
MODOBJS= ./ppxsrc.o
-> Compiling mod_func.cpp
-> NMODL .././ppxsrc.mod
Translating ppxsrc.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
Thread Safe
-> Compiling ppxsrc.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1223/1771] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json
[1224/1771] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py
[1225/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial.inc
[1226/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial.mod
[1227/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial_pp.mod
[1228/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/bacur.mod
[1229/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/banocur.mod
[1230/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/fornetcon.mod
[1231/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/invlfire.mod
[1232/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/natrans.mod
[1233/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/netmove.mod
[1234/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/sample.mod
[1235/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/unitstest.mod
[1236/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/version_macros.mod
[1237/1771] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/watchrange.mod
[1238/1771] Building special[-core] for test group pytest
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c
cfiles =
Mod files: "./mcna.mod"
MODOBJS= ./mcna.o
-> Compiling mod_func.cpp
-> NMODL .././mcna.mod
Translating mcna.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
Thread Safe
-> Compiling mcna.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1239/1771] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json
[1240/1771] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py
[1241/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod
[1242/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod
[1243/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
[1244/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
[1245/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod
[1246/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod
[1247/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
[1248/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod
[1249/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
[1250/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
[1251/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
[1252/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod
[1253/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
[1254/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod
[1255/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod
[1256/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod
[1257/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod
[1258/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod
[1259/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod
[1260/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod
[1261/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod
[1262/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
[1263/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod
[1264/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
[1265/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod
[1266/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod
[1267/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod
[1268/1771] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod
[1269/1771] Building CXX object test/CMakeFiles/testneuron.dir/common/catch2_main.cpp.o
[1270/1771] Linking CXX executable bin/test/testneuron
[1271/1771] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod
[1272/1771] Building CXX object test/coreneuron/unit/solver/CMakeFiles/test-solver.dir/test_solver.cpp.o
[1273/1771] Linking CXX executable bin/test-solver
[1274/1771] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
[1275/1771] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod
[1276/1771] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod
[1277/1771] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod
[1278/1771] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod
[1279/1771] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
[1280/1771] Building special[-core] for test group hoctests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f
cfiles =
Mod files: "./atest.mod" "./sdata.mod" "./sdata_pp.mod" "./sdata_ppts.mod" "./sdata_ts.mod"
MODOBJS= ./atest.o ./sdata.o ./sdata_pp.o ./sdata_ppts.o ./sdata_ts.o
-> Compiling mod_func.cpp
-> NMODL .././atest.mod
-> NMODL .././sdata.mod
-> NMODL .././sdata_pp.mod
Translating sdata_pp.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_pp.cpp
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Translating atest.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/atest.cpp
Translating sdata.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata.cpp
Thread Safe
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
-> NMODL .././sdata_ppts.mod
-> NMODL .././sdata_ts.mod
-> Compiling atest.cpp
Translating sdata_ppts.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_ppts.cpp
INCLUDEing sdata.inc
Thread Safe
Translating sdata_ts.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_ts.cpp
INCLUDEing sdata.inc
Thread Safe
-> Compiling sdata.cpp
-> Compiling sdata_pp.cpp
-> Compiling sdata_ppts.cpp
-> Compiling sdata_ts.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1281/1771] Generating hoctests/test_loadbal_hoc/expect_err.hoc
[1282/1771] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc
[1283/1771] Generating hoctests/perf1_hoc/expect_err.hoc
[1284/1771] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc
[1285/1771] Generating hoctests/test1_hoc/expect_err.hoc
[1286/1771] Generating hoctests/test1_hoc/vardimtests/test1.hoc
[1287/1771] Generating hoctests/test2_hoc/expect_err.hoc
[1288/1771] Generating hoctests/test2_hoc/vardimtests/test2.hoc
[1289/1771] Generating hoctests/test3_hoc/expect_err.hoc
[1290/1771] Generating hoctests/test3_hoc/vardimtests/test3.hoc
[1291/1771] Generating hoctests/test4_hoc/expect_err.hoc
[1292/1771] Generating hoctests/test4_hoc/vardimtests/test4.hoc
[1293/1771] Generating hoctests/test5_hoc/expect_err.hoc
[1294/1771] Generating hoctests/test5_hoc/vardimtests/test5.hoc
[1295/1771] Generating hoctests/test6_hoc/expect_err.hoc
[1296/1771] Generating hoctests/test6_hoc/vardimtests/test6.hoc
[1297/1771] Generating hoctests/test7_hoc/expect_err.hoc
[1298/1771] Generating hoctests/test7_hoc/vardimtests/test7.hoc
[1299/1771] Generating hoctests/test8_hoc/expect_err.hoc
[1300/1771] Generating hoctests/test8_hoc/vardimtests/test8.hoc
[1301/1771] Generating hoctests/test9_hoc/expect_err.hoc
[1302/1771] Generating hoctests/test9_hoc/vardimtests/test9.hoc
[1303/1771] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py
[1304/1771] Generating hoctests/test_kschan_py/tests/test_kschan.json
[1305/1771] Generating hoctests/test_kschan_py/tests/test_kschan.py
[1306/1771] Generating hoctests/test_mechfunc_py/tests/test_mechfunc.py
[1307/1771] Generating hoctests/test_mode_py/tests/test_mode.py
[1308/1771] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json
[1309/1771] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py
[1310/1771] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py
[1311/1771] Generating hoctests/test_setdata_py/tests/test_setdata.py
[1312/1771] Generating hoctests/test_shape_py/tests/test_shape.py
[1313/1771] Building special[-core] for test group parallel
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"
MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
-> Compiling mod_func.cpp
-> NMODL .././follower.mod
-> NMODL .././gap.mod
-> NMODL .././name_clashes.mod
Translating gap.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
Thread Safe
Translating follower.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Thread Safe
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
Thread Safe
-> NMODL .././unitstest.mod
-> NMODL .././version_macros.mod
-> Compiling follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
Thread Safe
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
Thread Safe
-> Compiling gap.cpp
-> Compiling name_clashes.cpp
-> Compiling unitstest.cpp
-> Compiling version_macros.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1314/1771] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py
[1315/1771] Generating hoctests/test1_py/vardimtests/test1.py
[1316/1771] Generating hoctests/test2_py/vardimtests/test2.py
[1317/1771] Generating hoctests/test9_py/vardimtests/test9.py
[1318/1771] Generating parallel/subworld/test/parallel_tests/test_subworld.py
[1319/1771] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py
[1320/1771] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py
[1321/1771] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py
[1322/1771] Generating parallel/bas/test/parallel_tests/test_bas.py
[1323/1771] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py
[1324/1771] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json
[1325/1771] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py
[1326/1771] Building special[-core] for test group nmodl_tests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5
cfiles =
Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod"
MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o
-> Compiling mod_func.cpp
-> NMODL .././cadif.mod
-> NMODL .././disc.mod
-> NMODL .././fornetcon.mod
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
Thread Safe
-> NMODL .././hhwatch.mod
Translating cadif.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Thread Safe
Translating disc.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
Notice: DISCRETE is not thread safe.
Notice: This mechanism cannot be used with CVODE
-> NMODL .././k3st.mod
-> NMODL .././table.mod
Translating table.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
Translating k3st.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
NEURON's CVode method ignores conservation
Thread Safe
Thread Safe
-> NMODL .././variabletypes.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
-> Compiling cadif.cpp
Thread Safe
-> Compiling disc.cpp
Translating variabletypes.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
Thread Safe
-> Compiling fornetcon.cpp
-> Compiling hhwatch.cpp
-> Compiling k3st.cpp
-> Compiling table.cpp
-> Compiling variabletypes.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1327/1771] Generating nmodl_tests/test_table/test/nmodl/test_table.py
[1328/1771] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py
[1329/1771] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py
[1330/1771] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py
[1331/1771] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py
[1332/1771] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py
[1333/1771] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py
[1334/1771] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py
[1335/1771] Building special[-core] for test group pytest_coreneuron
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"
MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/follower.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gap.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/name_clashes.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././follower.mod
-> NMODL .././gap.mod
-> NMODL .././name_clashes.mod
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
Translating gap.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
Translating follower.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Thread Safe
Thread Safe
-> NMODL .././unitstest.mod
Thread Safe
-> NMODL .././version_macros.mod
-> Compiling follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
Thread Safe
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
Thread Safe
-> Compiling gap.cpp
-> Compiling name_clashes.cpp
-> Compiling unitstest.cpp
-> Compiling version_macros.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1336/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py
[1337/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py
[1338/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py
[1339/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py
[1340/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py
[1341/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py
[1342/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py
[1343/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py
[1344/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py
[1345/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py
[1346/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py
[1347/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py
[1348/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py
[1349/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py
[1350/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json
[1351/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py
[1352/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py
[1353/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py
[1354/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py
[1355/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py
[1356/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py
[1357/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py
[1358/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py
[1359/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py
[1360/1771] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py
[1361/1771] Building special[-core] for test group external_ringtest
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff
cfiles =
Mod files: "./halfgap.mod"
MODOBJS= ./halfgap.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/halfgap.mod
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
Thread Safe
-> Compiling halfgap.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1362/1771] Generating ../../external_ringtest/neuron/args.py
[1363/1771] Generating ../../external_ringtest/neuron/commonutils.py
[1364/1771] Generating ../../external_ringtest/neuron/cell.hoc
[1365/1771] Generating ../../external_ringtest/neuron/celluniform.hoc
[1366/1771] Generating ../../external_ringtest/neuron/ranparm.py
[1367/1771] Generating ../../external_ringtest/neuron/ring.py
[1368/1771] Generating ../../external_ringtest/neuron/ringtest.py
[1369/1771] Generating ../../external_ringtest/neuron/ringuniform.py
[1370/1771] Generating ../../external_ringtest/neuron/settings.py
[1371/1771] Generating ../../external_ringtest/neuron_mpi/args.py
[1372/1771] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc
[1373/1771] Generating ../../external_ringtest/neuron_mpi/cell.hoc
[1374/1771] Generating ../../external_ringtest/neuron_mpi/commonutils.py
[1375/1771] Generating ../../external_ringtest/neuron_mpi/ranparm.py
[1376/1771] Generating ../../external_ringtest/neuron_mpi/ring.py
[1377/1771] Generating ../../external_ringtest/neuron_mpi/ringtest.py
[1378/1771] Generating ../../external_ringtest/neuron_mpi/ringuniform.py
[1379/1771] Generating ../../external_ringtest/neuron_mpi/settings.py
[1380/1771] Generating ../../external_ringtest/neuron_mpi_python/args.py
[1381/1771] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc
[1382/1771] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc
[1383/1771] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py
[1384/1771] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py
[1385/1771] Generating ../../external_ringtest/neuron_mpi_python/ring.py
[1386/1771] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py
[1387/1771] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py
[1388/1771] Generating ../../external_ringtest/neuron_mpi_python/settings.py
[1389/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py
[1390/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc
[1391/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc
[1392/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py
[1393/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py
[1394/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py
[1395/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py
[1396/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py
[1397/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py
[1398/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py
[1399/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc
[1400/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc
[1401/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py
[1402/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py
[1403/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py
[1404/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py
[1405/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py
[1406/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py
[1407/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py
[1408/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc
[1409/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc
[1410/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py
[1411/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py
[1412/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py
[1413/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py
[1414/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py
[1415/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc
[1416/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py
[1417/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py
[1418/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py
[1419/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc
[1420/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py
[1421/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py
[1422/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py
[1423/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py
[1424/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py
[1425/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc
[1426/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc
[1427/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py
[1428/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py
[1429/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py
[1430/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py
[1431/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py
[1432/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py
[1433/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc
[1434/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py
[1435/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc
[1436/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py
[1437/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py
[1438/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py
[1439/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py
[1440/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py
[1441/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py
[1442/1771] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py
[1443/1771] Building special[-core] for test group testcorenrn_bbcore
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876
cfiles =
Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod"
MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhderiv.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhkin.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nacum.mod
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhwatch.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse
[NMODL] [info] :: Running sympy solve visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././Gfluct3.mod
-> NMODL .././hhderiv.mod
-> NMODL .././hhkin.mod
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
Translating hhderiv.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
Thread Safe
Translating hhkin.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
Thread Safe
Thread Safe
-> NMODL .././hhwatch.mod
-> NMODL .././nacum.mod
-> NMODL .././vecevent.mod
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
Thread Safe
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating nacum.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
Thread Safe
-> Compiling Gfluct3.cpp
-> Compiling hhderiv.cpp
-> Compiling hhkin.cpp
-> Compiling hhwatch.cpp
-> Compiling nacum.cpp
-> Compiling vecevent.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1444/1771] Generating ../../testcorenrn_bbcore/neuron/common.hoc
[1445/1771] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc
[1446/1771] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc
[1447/1771] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc
[1448/1771] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc
[1449/1771] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc
[1450/1771] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1451/1771] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc
[1452/1771] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc
[1453/1771] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc
[1454/1771] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc
[1455/1771] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc
[1456/1771] Generating ../../testcorenrn_conc/neuron/common.hoc
[1457/1771] Generating ../../testcorenrn_conc/neuron/testconc.hoc
[1458/1771] Generating ../../testcorenrn_conc/neuron/defvar.hoc
[1459/1771] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc
[1460/1771] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc
[1461/1771] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc
[1462/1771] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc
[1463/1771] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc
[1464/1771] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1465/1771] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc
[1466/1771] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc
[1467/1771] Generating ../../testcorenrn_deriv/neuron/common.hoc
[1468/1771] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc
[1469/1771] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc
[1470/1771] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc
[1471/1771] Generating ../../testcorenrn_deriv/neuron/defvar.hoc
[1472/1771] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc
[1473/1771] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc
[1474/1771] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc
[1475/1771] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1476/1771] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc
[1477/1771] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc
[1478/1771] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc
[1479/1771] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc
[1480/1771] Generating ../../testcorenrn_gf/neuron/common.hoc
[1481/1771] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc
[1482/1771] Generating ../../testcorenrn_gf/neuron/defvar.hoc
[1483/1771] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc
[1484/1771] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc
[1485/1771] Generating ../../testcorenrn_gf/neuron/testgf.hoc
[1486/1771] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc
[1487/1771] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1488/1771] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc
[1489/1771] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc
[1490/1771] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc
[1491/1771] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc
[1492/1771] Generating ../../testcorenrn_kin/neuron/common.hoc
[1493/1771] Generating ../../testcorenrn_kin/neuron/defvar.hoc
[1494/1771] Generating ../../testcorenrn_kin/neuron/testkin.hoc
[1495/1771] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc
[1496/1771] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc
[1497/1771] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc
[1498/1771] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1499/1771] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc
[1500/1771] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc
[1501/1771] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc
[1502/1771] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc
[1503/1771] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc
[1504/1771] Generating ../../testcorenrn_patstim/neuron/common.hoc
[1505/1771] Generating ../../testcorenrn_patstim/neuron/defvar.hoc
[1506/1771] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc
[1507/1771] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc
[1508/1771] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc
[1509/1771] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc
[1510/1771] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc
[1511/1771] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc
[1512/1771] Generating ../../testcorenrn_vecplay/neuron/common.hoc
[1513/1771] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc
[1514/1771] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc
[1515/1771] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc
[1516/1771] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc
[1517/1771] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc
[1518/1771] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc
[1519/1771] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc
[1520/1771] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc
[1521/1771] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1522/1771] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc
[1523/1771] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc
[1524/1771] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc
[1525/1771] Generating ../../testcorenrn_vecevent/neuron/common.hoc
[1526/1771] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc
[1527/1771] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc
[1528/1771] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc
[1529/1771] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc
[1530/1771] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc
[1531/1771] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc
[1532/1771] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc
[1533/1771] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1534/1771] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc
[1535/1771] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc
[1536/1771] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc
[1537/1771] Generating ../../testcorenrn_watch/neuron/common.hoc
[1538/1771] Generating ../../testcorenrn_watch/neuron/defvar.hoc
[1539/1771] Generating ../../testcorenrn_watch/neuron/testwatch.hoc
[1540/1771] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc
[1541/1771] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc
[1542/1771] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc
[1543/1771] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc
[1544/1771] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1545/1771] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc
[1546/1771] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc
[1547/1771] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc
[1548/1771] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc
[1549/1771] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc
[1550/1771] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc
[1551/1771] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc
[1552/1771] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc
[1553/1771] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc
[1554/1771] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc
[1555/1771] Building special[-core] for test group coreneuron_modtests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30
cfiles =
Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod"
MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./invlfire.o ./natrans.o ./netmove.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial_pp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bacur.mod
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/banocur.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/fornetcon.mod
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfire.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/natrans.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netmove.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/sample.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/watchrange.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././axial.mod
-> NMODL .././axial_pp.mod
-> NMODL .././bacur.mod
Translating bacur.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/bacur.cpp
Thread Safe
Translating axial_pp.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/axial_pp.cpp
INCLUDEing axial.inc
Translating axial.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/axial.cpp
Thread Safe
INCLUDEing axial.inc
Thread Safe
-> NMODL .././banocur.mod
-> NMODL .././fornetcon.mod
-> NMODL .././invlfire.mod
Translating banocur.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/banocur.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/fornetcon.cpp
Thread Safe
-> NMODL .././natrans.mod
-> NMODL .././netmove.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/invlfire.cpp
Thread Safe
-> NMODL .././sample.mod
Translating netmove.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/netmove.cpp
Thread Safe
Translating natrans.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/natrans.cpp
Thread Safe
-> NMODL .././unitstest.mod
Translating sample.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/sample.cpp
Thread Safe
-> NMODL .././version_macros.mod
-> NMODL .././watchrange.mod
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/unitstest.cpp
Thread Safe
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/version_macros.cpp
Thread Safe
-> Compiling axial.cpp
-> Compiling axial_pp.cpp
Translating watchrange.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/watchrange.cpp
Thread Safe
-> Compiling bacur.cpp
-> Compiling banocur.cpp
-> Compiling fornetcon.cpp
-> Compiling invlfire.cpp
-> Compiling natrans.cpp
-> Compiling netmove.cpp
-> Compiling sample.cpp
-> Compiling unitstest.cpp
-> Compiling version_macros.cpp
-> Compiling watchrange.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1556/1771] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py
[1557/1771] Generating coreneuron_modtests/inputpresyn_py/test/coreneuron/test_inputpresyn.py
[1558/1771] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc
[1559/1771] Generating coreneuron_modtests/version_macros/test/pytest_coreneuron/test_version_macros.py
[1560/1771] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py
[1561/1771] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py
[1562/1771] Generating coreneuron_modtests/fast_imem_py_cpu/test/pytest_coreneuron/test_fast_imem.py
[1563/1771] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1564/1771] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py
[1565/1771] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py
[1566/1771] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py
[1567/1771] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py
[1568/1771] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py
[1569/1771] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py
[1570/1771] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py
[1571/1771] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py
[1572/1771] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py
[1573/1771] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1574/1771] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/common/catch2_main.cpp.o
[1575/1771] Linking CXX executable bin/test/nrn-benchmarks
[1576/1771] Building special[-core] for test group example_nmodl
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2
cfiles =
Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod"
MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o
-> Compiling mod_func.cpp
-> NMODL .././argpass.mod
-> NMODL .././cabpump.mod
-> NMODL .././cachan.mod
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Translating argpass.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
Notice: VERBATIM blocks are not thread safe
-> NMODL .././cacum.mod
Translating cachan.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
Thread Safe
-> NMODL .././cacur.mod
-> NMODL .././cadif.mod
Translating cacum.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
Thread Safe
-> NMODL .././cadifusl.mod
Translating cacur.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
Thread Safe
Translating cadif.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
-> NMODL .././cagk.mod
Thread Safe
-> NMODL .././cagkftab.mod
Translating cadifusl.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Translating cagk.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
Thread Safe
Translating cagkftab.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
Thread Safe
-> NMODL .././capmp.mod
-> NMODL .././expsynspine.mod
-> NMODL .././fh.mod
Translating capmp.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
NEURON's CVode method ignores conservation
Thread Safe
Translating fh.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
INCLUDEing standard.inc
Notice: Assignment to the GLOBAL variable, "inf", is not thread safe
Notice: Assignment to the GLOBAL variable, "tau", is not thread safe
Translating expsynspine.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
Notice: LINEAR is not thread safe.
-> NMODL .././fit1.mod
-> NMODL .././gap.mod
-> NMODL .././hh1.mod
Translating gap.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
Notice: Use of POINTER is not thread safe.
Translating hh1.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp
Notice: This mechanism cannot be used with CVODE
Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe
Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "minf", is not thread safe
Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
-> NMODL .././hhvect.mod
Translating fit1.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
Notice: VERBATIM blocks are not thread safe
-> NMODL .././inatest.mod
-> NMODL .././ionleak.mod
Translating hhvect.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
Translating ionleak.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp
Thread Safe
Translating inatest.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp
Thread Safe
-> NMODL .././nacum.mod
-> NMODL .././nacur.mod
-> NMODL .././nadifl.mod
Translating nacum.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp
Thread Safe
Translating nadifl.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp
Thread Safe
-> NMODL .././nonlin.mod
Translating nacur.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp
Thread Safe
-> NMODL .././obj_ex.mod
-> NMODL .././order.mod
Translating obj_ex.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp
Translating nonlin.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp
Notice: NONLINEAR is not thread safe.
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
-> NMODL .././passiv.mod
-> NMODL .././rchan.mod
Translating order.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp
Thread Safe
-> NMODL .././stim1.mod
Translating rchan.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp
Notice: normrand is not thread safe
Notice: This mechanism cannot be used with CVODE
-> NMODL .././str.mod
Translating passiv.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp
Thread Safe
-> NMODL .././syn1.mod
Translating stim1.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp
Thread Safe
-> NMODL .././synpre.mod
Translating str.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp
Notice: VERBATIM blocks are not thread safe
-> NMODL .././trivial.mod
Translating syn1.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp
Thread Safe
-> NMODL .././tstdarray.mod
Translating trivial.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp
-> NMODL .././tstextrn.mod
Translating synpre.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
-> NMODL .././tstpnt1.mod
Translating tstdarray.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp
Thread Safe
-> NMODL .././tstpnt2.mod
Translating tstextrn.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp
Notice: Use of EXTERNAL is not thread safe.
-> NMODL .././tstvec.mod
Translating tstpnt2.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp
Notice: Use of POINTER is not thread safe.
Translating tstpnt1.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp
Notice: Use of POINTER is not thread safe.
-> NMODL .././vclmp1.mod
-> NMODL .././vlag.mod
-> Compiling argpass.cpp
Translating vclmp1.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
Notice: LINEAR is not thread safe.
Translating vlag.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp
Thread Safe
Translating tstvec.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp
Notice: VERBATIM blocks are not thread safe
-> Compiling cabpump.cpp
-> Compiling cachan.cpp
-> Compiling cacum.cpp
-> Compiling cacur.cpp
-> Compiling cadif.cpp
-> Compiling cadifusl.cpp
-> Compiling cagk.cpp
-> Compiling cagkftab.cpp
-> Compiling capmp.cpp
-> Compiling expsynspine.cpp
-> Compiling fh.cpp
-> Compiling fit1.cpp
-> Compiling gap.cpp
-> Compiling hh1.cpp
-> Compiling hhvect.cpp
-> Compiling inatest.cpp
-> Compiling ionleak.cpp
-> Compiling nacum.cpp
-> Compiling nacur.cpp
-> Compiling nadifl.cpp
-> Compiling nonlin.cpp
-> Compiling obj_ex.cpp
-> Compiling order.cpp
-> Compiling passiv.cpp
-> Compiling rchan.cpp
-> Compiling stim1.cpp
-> Compiling str.cpp
-> Compiling syn1.cpp
-> Compiling synpre.cpp
-> Compiling trivial.cpp
-> Compiling tstdarray.cpp
-> Compiling tstextrn.cpp
-> Compiling tstpnt1.cpp
-> Compiling tstpnt2.cpp
-> Compiling tstvec.cpp
-> Compiling vclmp1.cpp
-> Compiling vlag.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1577/1771] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc
[1578/1771] Generating example_nmodl/cadif_hoc/cadif.ses
[1579/1771] Generating example_nmodl/cabpump_hoc/cabpump.hoc
[1580/1771] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc
[1581/1771] Generating example_nmodl/cachan_hoc/cachan.hoc
[1582/1771] Generating example_nmodl/cadif_hoc/cadif.hoc
[1583/1771] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc
[1584/1771] Generating example_nmodl/cagk_hoc/cagk.hoc
[1585/1771] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc
[1586/1771] Generating example_nmodl/cv_hoc/cv.hoc
[1587/1771] Generating example_nmodl/capmp_hoc/capmp.hoc
[1588/1771] Generating example_nmodl/fh_hoc/fh.hoc
[1589/1771] Generating example_nmodl/fit1_hoc/fit1.hoc
[1590/1771] Generating example_nmodl/hhvect_hoc/hhvect.hoc
[1591/1771] Generating example_nmodl/gap_hoc/gap.hoc
[1592/1771] Generating example_nmodl/nacum_hoc/nacum.hoc
[1593/1771] Generating example_nmodl/hh1_hoc/hh1.hoc
[1594/1771] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc
[1595/1771] Generating example_nmodl/nadifl1_hoc/nadifl1.ses
[1596/1771] Generating example_nmodl/nadifl2_hoc/nadifl2.ses
[1597/1771] Generating example_nmodl/nadifl3_hoc/nadifl3.ses
[1598/1771] Generating example_nmodl/nadifl4_hoc/nadifl4.ses
[1599/1771] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc
[1600/1771] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc
[1601/1771] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc
[1602/1771] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc
[1603/1771] Generating example_nmodl/passiv_hoc/passiv.hoc
[1604/1771] Generating example_nmodl/order_hoc/order.hoc
[1605/1771] Generating example_nmodl/synpre_hoc/synpre.hoc
[1606/1771] Generating example_nmodl/stim1_hoc/stim1.hoc
[1607/1771] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc
[1608/1771] Generating example_nmodl/syn1_hoc/syn1.hoc
[1609/1771] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc
[1610/1771] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc
[1611/1771] Generating example_nmodl/tstvec_hoc/tstvec.hoc
[1612/1771] Generating example_nmodl/expsynspine_py/expsynspine.py
[1613/1771] Generating example_nmodl/tstpnt1_py/tstpnt1.py
[1614/1771] Generating example_nmodl/expsynspine_py/expsynspine.ses
[1615/1771] Generating example_nmodl/tstpnt2_py/tstpnt2.py
[1616/1771] Generating example_nmodl/cagkftab_py/cagkftab.py
[1617/1771] Generating example_nmodl/vlag_py/vlag.py
[1618/1771] Generating example_nmodl/nonlin_py/nonlin.py
[1619/1771] Building special[-core] for test group reduced_dentate
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead
cfiles =
Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod"
MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Ca.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KA.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_CadepK.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRf.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRs.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Na.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/CaBK.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_M.mod
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_UK.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_sAHP.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/LcaMig.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_KIn.mod
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_na8st.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse
[NMODL] [info] :: Running sympy solve visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bgka.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ccanl.mod
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ggap.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gskch.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/holdingi.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hyperde3.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ichan2.mod
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/iconc_Ca.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/kcaPR.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/na3n.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nca.mod
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/spines.mod
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/tca.mod
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
-> Compiling mod_func.cpp
-> NMODL .././Aradi_CadepK.mod
-> NMODL .././Aradi_Ca.mod
-> NMODL .././Aradi_KA.mod
Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp
Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp
Thread Safe
Thread Safe
Translating Aradi_KA.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp
Thread Safe
-> NMODL .././Aradi_KDRf.mod
-> NMODL .././Aradi_KDRs.mod
-> NMODL .././Aradi_Na.mod
Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp
Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp
Thread Safe
Thread Safe
Translating Aradi_Na.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp
Thread Safe
-> NMODL .././CaBK.mod
-> NMODL .././DGC_M.mod
-> NMODL .././DGC_UK.mod
Translating CaBK.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp
Thread Safe
Translating DGC_M.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp
Thread Safe
-> NMODL .././DGC_sAHP.mod
Translating DGC_UK.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp
-> NMODL .././Gfluct3.mod
Thread Safe
-> NMODL .././LcaMig.mod
Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp
Thread Safe
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp
Thread Safe
-> NMODL .././SH_KIn.mod
-> NMODL .././SH_na8st.mod
Translating LcaMig.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp
Thread Safe
-> NMODL .././bgka.mod
-> NMODL .././ccanl.mod
Translating SH_KIn.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp
Translating SH_na8st.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp
Thread Safe
NEURON's CVode method ignores conservation
Thread Safe
Translating bgka.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp
Thread Safe
-> NMODL .././ggap.mod
-> NMODL .././gskch.mod
Translating ccanl.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp
Thread Safe
-> NMODL .././holdingi.mod
-> NMODL .././hyperde3.mod
Translating ggap.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp
Thread Safe
Translating gskch.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp
Thread Safe
-> NMODL .././ichan2.mod
-> NMODL .././iconc_Ca.mod
Translating holdingi.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp
Thread Safe
Translating hyperde3.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp
Thread Safe
-> NMODL .././kcaPR.mod
-> NMODL .././na3n.mod
Translating ichan2.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp
Thread Safe
Translating iconc_Ca.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp
Thread Safe
-> NMODL .././nca.mod
Translating kcaPR.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp
Thread Safe
-> NMODL .././spines.mod
Translating na3n.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp
-> NMODL .././tca.mod
Thread Safe
-> NMODL .././vecevent.mod
Translating nca.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp
Thread Safe
Translating spines.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp
Thread Safe
Translating tca.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp
-> Compiling Aradi_Ca.cpp
Thread Safe
-> Compiling Aradi_CadepK.cpp
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
-> Compiling Aradi_KA.cpp
-> Compiling Aradi_KDRf.cpp
-> Compiling Aradi_KDRs.cpp
-> Compiling Aradi_Na.cpp
-> Compiling CaBK.cpp
-> Compiling DGC_M.cpp
-> Compiling DGC_UK.cpp
-> Compiling DGC_sAHP.cpp
-> Compiling Gfluct3.cpp
-> Compiling LcaMig.cpp
-> Compiling SH_KIn.cpp
-> Compiling SH_na8st.cpp
-> Compiling bgka.cpp
-> Compiling ccanl.cpp
-> Compiling ggap.cpp
-> Compiling gskch.cpp
-> Compiling holdingi.cpp
-> Compiling hyperde3.cpp
-> Compiling ichan2.cpp
-> Compiling iconc_Ca.cpp
-> Compiling kcaPR.cpp
-> Compiling na3n.cpp
-> Compiling nca.cpp
-> Compiling spines.cpp
-> Compiling tca.cpp
-> Compiling vecevent.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1620/1771] Generating ../../reduced_dentate/neuron/commonutils.py
[1621/1771] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat
[1622/1771] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat
[1623/1771] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat
[1624/1771] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat
[1625/1771] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat
[1626/1771] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat
[1627/1771] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat
[1628/1771] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat
[1629/1771] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat
[1630/1771] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat
[1631/1771] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat
[1632/1771] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat
[1633/1771] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat
[1634/1771] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat
[1635/1771] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat
[1636/1771] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat
[1637/1771] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat
[1638/1771] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat
[1639/1771] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat
[1640/1771] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat
[1641/1771] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat
[1642/1771] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat
[1643/1771] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat
[1644/1771] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat
[1645/1771] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat
[1646/1771] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat
[1647/1771] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat
[1648/1771] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat
[1649/1771] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat
[1650/1771] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat
[1651/1771] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat
[1652/1771] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat
[1653/1771] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat
[1654/1771] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat
[1655/1771] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat
[1656/1771] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat
[1657/1771] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat
[1658/1771] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat
[1659/1771] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat
[1660/1771] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat
[1661/1771] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat
[1662/1771] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat
[1663/1771] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat
[1664/1771] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat
[1665/1771] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat
[1666/1771] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat
[1667/1771] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat
[1668/1771] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat
[1669/1771] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat
[1670/1771] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat
[1671/1771] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat
[1672/1771] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat
[1673/1771] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat
[1674/1771] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat
[1675/1771] Generating ../../reduced_dentate/neuron/lib.hoc
[1676/1771] Generating ../../reduced_dentate/neuron/main.hoc
[1677/1771] Generating ../../reduced_dentate/neuron/parameters/Control.hoc
[1678/1771] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc
[1679/1771] Generating ../../reduced_dentate/neuron/templates/DGC.hoc
[1680/1771] Generating ../../reduced_dentate/neuron/run.hoc
[1681/1771] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc
[1682/1771] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc
[1683/1771] Generating ../../reduced_dentate/neuron/templates/Dict.hoc
[1684/1771] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc
[1685/1771] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc
[1686/1771] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc
[1687/1771] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc
[1688/1771] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc
[1689/1771] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc
[1690/1771] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc
[1691/1771] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc
[1692/1771] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc
[1693/1771] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py
[1694/1771] Generating ../../reduced_dentate/neuron/templates/Value.hoc
[1695/1771] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc
[1696/1771] Generating ../../reduced_dentate/neuron/templates/defvar.hoc
[1697/1771] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat
[1698/1771] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat
[1699/1771] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat
[1700/1771] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat
[1701/1771] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat
[1702/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat
[1703/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat
[1704/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat
[1705/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat
[1706/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat
[1707/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat
[1708/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat
[1709/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat
[1710/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat
[1711/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat
[1712/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat
[1713/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat
[1714/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat
[1715/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat
[1716/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat
[1717/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat
[1718/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat
[1719/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat
[1720/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat
[1721/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat
[1722/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat
[1723/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat
[1724/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat
[1725/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat
[1726/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat
[1727/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat
[1728/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat
[1729/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat
[1730/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat
[1731/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat
[1732/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat
[1733/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat
[1734/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat
[1735/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat
[1736/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat
[1737/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat
[1738/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat
[1739/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat
[1740/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat
[1741/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat
[1742/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat
[1743/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat
[1744/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat
[1745/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat
[1746/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat
[1747/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat
[1748/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat
[1749/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat
[1750/1771] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc
[1751/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc
[1752/1771] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat
[1753/1771] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc
[1754/1771] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc
[1755/1771] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc
[1756/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc
[1757/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc
[1758/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc
[1759/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc
[1760/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc
[1761/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc
[1762/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc
[1763/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc
[1764/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc
[1765/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc
[1766/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc
[1767/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc
[1768/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc
[1769/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc
[1770/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc
[1771/1771] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc
$ ccache -vs 2>/dev/null
Cache directory: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/ccache
Config file: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf
Stats updated: Thu Oct 26 02:54:57 2023
Cacheable calls: 510 / 510 (100.0%)
Hits: 0 / 510 ( 0.00%)
Direct: 0
Preprocessed: 0
Misses: 510 / 510 (100.0%)
Successful lookups:
Direct: 0 / 510 ( 0.00%)
Preprocessed: 0 / 510 ( 0.00%)
Local storage:
Cache size (GB): 0.28 / 5.00 ( 5.62%)
Files: 1902
Hits: 0 / 510 ( 0.00%)
Misses: 510 / 510 (100.0%)
Reads: 1020
Writes: 953
$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg
$ cat src/nrnpython/setup.cfg
[install]
prefix=
$ ctest --output-on-failure
Test project /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build
Start 217: external_ringtest::coreneuron_cpu_mpi_offline::preparation
Start 225: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
1/276 Test #225: testcorenrn_bbcore::coreneuron_cpu_offline::preparation .................. Passed 2.44 sec
Start 231: testcorenrn_conc::coreneuron_cpu_offline::preparation
2/276 Test #231: testcorenrn_conc::coreneuron_cpu_offline::preparation .................... Passed 0.39 sec
Start 237: testcorenrn_deriv::coreneuron_cpu_offline::preparation
3/276 Test #237: testcorenrn_deriv::coreneuron_cpu_offline::preparation ................... Passed 0.41 sec
Start 249: testcorenrn_kin::coreneuron_cpu_offline::preparation
4/276 Test #249: testcorenrn_kin::coreneuron_cpu_offline::preparation ..................... Passed 0.41 sec
Start 136: pyinit::nrniv_py3.10_python_check_sys_path::preparation
5/276 Test #136: pyinit::nrniv_py3.10_python_check_sys_path::preparation .................. Passed 0.10 sec
Start 138: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation
6/276 Test #138: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ............... Passed 0.04 sec
Start 140: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation
7/276 Test #140: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................ Passed 0.04 sec
Start 142: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation
8/276 Test #142: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation ............. Passed 0.03 sec
Start 144: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation
9/276 Test #144: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ........... Passed 0.04 sec
Start 146: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation
10/276 Test #146: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........ Passed 0.04 sec
Start 148: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation
11/276 Test #148: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ........... Passed 0.04 sec
Start 150: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation
12/276 Test #150: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........ Passed 0.04 sec
Start 152: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation
13/276 Test #152: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ...... Passed 0.04 sec
Start 154: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation
14/276 Test #154: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ... Passed 0.05 sec
Start 156: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation
15/276 Test #156: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation ....... Passed 0.04 sec
Start 158: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation
16/276 Test #158: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation .... Passed 0.04 sec
Start 160: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation
17/276 Test #160: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........ Passed 0.02 sec
Start 162: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation
18/276 Test #162: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation ..... Passed 0.02 sec
Start 164: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation
19/276 Test #164: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation ....... Passed 0.02 sec
Start 166: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation
20/276 Test #166: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation .... Passed 0.02 sec
Start 172: pyinit::nrniv_pydef_python_check_sys_path::preparation
21/276 Test #172: pyinit::nrniv_pydef_python_check_sys_path::preparation ................... Passed 0.02 sec
Start 174: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
22/276 Test #174: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................ Passed 0.02 sec
Start 176: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
23/276 Test #176: pyinit::nrniv_pydef_python_check_sys_prefix::preparation ................. Passed 0.02 sec
Start 178: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
24/276 Test #178: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation .............. Passed 0.02 sec
Start 180: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
25/276 Test #180: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............ Passed 0.02 sec
Start 182: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
26/276 Test #182: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation ......... Passed 0.02 sec
Start 184: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
27/276 Test #184: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............ Passed 0.02 sec
Start 186: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
28/276 Test #186: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation ......... Passed 0.02 sec
Start 188: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
29/276 Test #188: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation ....... Passed 0.02 sec
Start 190: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
30/276 Test #190: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation .... Passed 0.02 sec
Start 192: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
31/276 Test #192: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........ Passed 0.02 sec
Start 194: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
32/276 Test #194: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation ..... Passed 0.02 sec
Start 196: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
33/276 Test #196: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation ......... Passed 0.02 sec
Start 198: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
34/276 Test #198: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ...... Passed 0.02 sec
Start 200: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
35/276 Test #200: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........ Passed 0.02 sec
Start 202: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
36/276 Test #202: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation ..... Passed 0.02 sec
Start 210: external_ringtest::neuron
37/276 Test #217: external_ringtest::coreneuron_cpu_mpi_offline::preparation ............... Passed 4.81 sec
Start 243: testcorenrn_gf::coreneuron_cpu_offline::preparation
38/276 Test #243: testcorenrn_gf::coreneuron_cpu_offline::preparation ...................... Passed 0.34 sec
Start 254: testcorenrn_patstim::coreneuron_cpu_offline::preparation
39/276 Test #254: testcorenrn_patstim::coreneuron_cpu_offline::preparation ................. Passed 0.36 sec
Start 260: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
40/276 Test #260: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ................. Passed 0.38 sec
Start 272: testcorenrn_watch::coreneuron_cpu_offline::preparation
41/276 Test #272: testcorenrn_watch::coreneuron_cpu_offline::preparation ................... Passed 0.31 sec
Start 211: external_ringtest::neuron_mpi
42/276 Test #211: external_ringtest::neuron_mpi ............................................ Passed 2.41 sec
Start 212: external_ringtest::neuron_mpi_python
43/276 Test #210: external_ringtest::neuron ................................................ Passed 4.00 sec
Start 221: testcorenrn_bbcore::neuron
44/276 Test #221: testcorenrn_bbcore::neuron ............................................... Passed 0.31 sec
Start 222: testcorenrn_bbcore::coreneuron_cpu_online
45/276 Test #222: testcorenrn_bbcore::coreneuron_cpu_online ................................ Passed 0.79 sec
Start 223: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
46/276 Test #223: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ............... Passed 0.62 sec
Start 224: testcorenrn_bbcore::coreneuron_cpu_offline
47/276 Test #224: testcorenrn_bbcore::coreneuron_cpu_offline ............................... Passed 0.44 sec
Start 227: testcorenrn_conc::neuron
48/276 Test #227: testcorenrn_conc::neuron ................................................. Passed 0.34 sec
Start 228: testcorenrn_conc::coreneuron_cpu_online
49/276 Test #212: external_ringtest::neuron_mpi_python ..................................... Passed 2.84 sec
Start 213: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
50/276 Test #228: testcorenrn_conc::coreneuron_cpu_online .................................. Passed 0.57 sec
Start 229: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
51/276 Test #229: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ................. Passed 0.63 sec
Start 230: testcorenrn_conc::coreneuron_cpu_offline
52/276 Test #230: testcorenrn_conc::coreneuron_cpu_offline ................................. Passed 0.26 sec
Start 233: testcorenrn_deriv::neuron
53/276 Test #233: testcorenrn_deriv::neuron ................................................ Passed 0.33 sec
Start 234: testcorenrn_deriv::coreneuron_cpu_online
54/276 Test #213: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................ Passed 1.85 sec
Start 214: external_ringtest::coreneuron_cpu_mpi
55/276 Test #234: testcorenrn_deriv::coreneuron_cpu_online ................................. Passed 0.56 sec
Start 235: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
56/276 Test #235: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................ Passed 0.62 sec
Start 236: testcorenrn_deriv::coreneuron_cpu_offline
57/276 Test #214: external_ringtest::coreneuron_cpu_mpi .................................... Passed 0.98 sec
Start 215: external_ringtest::coreneuron_cpu_mpi_python
58/276 Test #236: testcorenrn_deriv::coreneuron_cpu_offline ................................ Passed 0.27 sec
Start 245: testcorenrn_kin::neuron
59/276 Test #245: testcorenrn_kin::neuron .................................................. Passed 0.31 sec
Start 246: testcorenrn_kin::coreneuron_cpu_online
60/276 Test #246: testcorenrn_kin::coreneuron_cpu_online ................................... Passed 0.79 sec
Start 247: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
61/276 Test #215: external_ringtest::coreneuron_cpu_mpi_python ............................. Passed 1.37 sec
Start 216: external_ringtest::coreneuron_cpu_mpi_offline
62/276 Test #247: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate .................. Passed 0.61 sec
Start 248: testcorenrn_kin::coreneuron_cpu_offline
63/276 Test #216: external_ringtest::coreneuron_cpu_mpi_offline ............................ Passed 0.54 sec
Start 239: testcorenrn_gf::neuron
64/276 Test #248: testcorenrn_kin::coreneuron_cpu_offline .................................. Passed 0.27 sec
Start 1: cmd_interface_test
65/276 Test #1: cmd_interface_test ....................................................... Passed 0.41 sec
Start 2: interleave_info_constructor_test
66/276 Test #2: interleave_info_constructor_test ......................................... Passed 0.22 sec
Start 3: alignment_test
67/276 Test #3: alignment_test ........................................................... Passed 0.22 sec
Start 4: queuing_test
68/276 Test #4: queuing_test ............................................................. Passed 0.22 sec
Start 5: test-solver
69/276 Test #5: test-solver .............................................................. Passed 0.32 sec
Start 6: lfp_test
70/276 Test #6: lfp_test ................................................................. Passed 0.43 sec
Start 7: unit_tests::testneuron
71/276 Test #239: testcorenrn_gf::neuron ................................................... Passed 2.02 sec
Start 240: testcorenrn_gf::coreneuron_cpu_online
72/276 Test #7: unit_tests::testneuron ................................................... Passed 0.27 sec
Start 8: unit_tests::testneuron_soa_erase_calls_terminate
73/276 Test #8: unit_tests::testneuron_soa_erase_calls_terminate ......................... Passed 0.10 sec
Start 9: ringtest
74/276 Test #240: testcorenrn_gf::coreneuron_cpu_online .................................... Passed 0.74 sec
Start 241: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
75/276 Test #9: ringtest ................................................................. Passed 0.51 sec
Start 10: connect_dend
76/276 Test #10: connect_dend ............................................................. Passed 0.17 sec
Start 11: mpi_init::nrniv_mpiopt
77/276 Test #11: mpi_init::nrniv_mpiopt ................................................... Passed 0.33 sec
Start 12: mpi_init::nrniv_nrnmpi_init
78/276 Test #12: mpi_init::nrniv_nrnmpi_init .............................................. Passed 0.33 sec
Start 13: mpi_init::python_nrnmpi_init
79/276 Test #13: mpi_init::python_nrnmpi_init ............................................. Passed 0.75 sec
Start 14: mpi_init::python_mpienv
80/276 Test #241: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ................... Passed 2.16 sec
Start 242: testcorenrn_gf::coreneuron_cpu_offline
81/276 Test #14: mpi_init::python_mpienv .................................................. Passed 0.71 sec
Start 15: mpi_init::nrniv_mpiexec_mpiopt
82/276 Test #242: testcorenrn_gf::coreneuron_cpu_offline ................................... Passed 0.44 sec
Start 251: testcorenrn_patstim::neuron
83/276 Test #15: mpi_init::nrniv_mpiexec_mpiopt ........................................... Passed 0.25 sec
Start 16: mpi_init::nrniv_mpiexec_nrnmpi_init
84/276 Test #16: mpi_init::nrniv_mpiexec_nrnmpi_init ...................................... Passed 0.26 sec
Start 17: mpi_init::python_mpiexec_nrnmpi_init
85/276 Test #251: testcorenrn_patstim::neuron .............................................. Passed 0.40 sec
Start 252: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
86/276 Test #17: mpi_init::python_mpiexec_nrnmpi_init ..................................... Passed 0.78 sec
Start 18: mpi_init::python_mpiexec_mpienv
87/276 Test #252: testcorenrn_patstim::coreneuron_cpu_offline_saverestore .................. Passed 1.01 sec
Start 253: testcorenrn_patstim::coreneuron_cpu_offline
88/276 Test #253: testcorenrn_patstim::coreneuron_cpu_offline .............................. Passed 0.43 sec
Start 256: testcorenrn_vecplay::neuron
89/276 Test #18: mpi_init::python_mpiexec_mpienv .......................................... Passed 0.78 sec
Start 19: pytest::basic_tests_py3.10
90/276 Test #256: testcorenrn_vecplay::neuron .............................................. Passed 0.37 sec
Start 257: testcorenrn_vecplay::coreneuron_cpu_online
91/276 Test #19: pytest::basic_tests_py3.10 ............................................... Passed 0.98 sec
Start 20: pytest_coreneuron::basic_tests_py3.10
92/276 Test #257: testcorenrn_vecplay::coreneuron_cpu_online ............................... Passed 0.73 sec
Start 258: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
93/276 Test #258: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate .............. Passed 0.80 sec
Start 259: testcorenrn_vecplay::coreneuron_cpu_offline
94/276 Test #259: testcorenrn_vecplay::coreneuron_cpu_offline .............................. Passed 0.28 sec
Start 268: testcorenrn_watch::neuron
95/276 Test #268: testcorenrn_watch::neuron ................................................ Passed 0.51 sec
Start 269: testcorenrn_watch::coreneuron_cpu_online
96/276 Test #269: testcorenrn_watch::coreneuron_cpu_online ................................. Passed 0.70 sec
Start 270: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
97/276 Test #270: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................ Passed 0.78 sec
Start 271: testcorenrn_watch::coreneuron_cpu_offline
98/276 Test #271: testcorenrn_watch::coreneuron_cpu_offline ................................ Passed 0.28 sec
Start 274: testcorenrn_netstimdirect::direct_netstimdirect
99/276 Test #274: testcorenrn_netstimdirect::direct_netstimdirect .......................... Passed 0.83 sec
Start 275: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
100/276 Test #20: pytest_coreneuron::basic_tests_py3.10 .................................... Passed 4.51 sec
Start 21: datahandle::datahandle_tests
101/276 Test #275: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ......... Passed 0.95 sec
Start 22: coverage_tests::cover_tests
Start 23: example_nmodl::ca_ap_hoc
102/276 Test #21: datahandle::datahandle_tests ............................................. Passed 0.97 sec
Start 24: example_nmodl::cabpump_hoc
103/276 Test #23: example_nmodl::ca_ap_hoc ................................................. Passed 0.42 sec
Start 25: example_nmodl::cachan_hoc
104/276 Test #24: example_nmodl::cabpump_hoc ............................................... Passed 0.27 sec
Start 26: example_nmodl::cadif_hoc
105/276 Test #25: example_nmodl::cachan_hoc ................................................ Passed 0.23 sec
Start 27: example_nmodl::cadifusl_hoc
106/276 Test #26: example_nmodl::cadif_hoc ................................................. Passed 0.22 sec
Start 28: example_nmodl::cadifusl1_hoc
107/276 Test #27: example_nmodl::cadifusl_hoc .............................................. Passed 0.22 sec
Start 29: example_nmodl::cadifusl2_hoc
108/276 Test #22: coverage_tests::cover_tests .............................................. Passed 0.96 sec
Start 30: example_nmodl::cagk_hoc
109/276 Test #29: example_nmodl::cadifusl2_hoc ............................................. Passed 0.17 sec
Start 31: example_nmodl::capmp_hoc
110/276 Test #28: example_nmodl::cadifusl1_hoc ............................................. Passed 0.29 sec
Start 32: example_nmodl::cv_hoc
111/276 Test #30: example_nmodl::cagk_hoc .................................................. Passed 0.14 sec
Start 33: example_nmodl::fh_hoc
112/276 Test #32: example_nmodl::cv_hoc .................................................... Passed 0.13 sec
Start 34: example_nmodl::fit1_hoc
113/276 Test #33: example_nmodl::fh_hoc .................................................... Passed 0.13 sec
Start 35: example_nmodl::gap_hoc
114/276 Test #31: example_nmodl::capmp_hoc ................................................. Passed 0.25 sec
Start 36: example_nmodl::hh1_hoc
115/276 Test #34: example_nmodl::fit1_hoc .................................................. Passed 0.14 sec
Start 37: example_nmodl::hhvect_hoc
116/276 Test #35: example_nmodl::gap_hoc ................................................... Passed 0.15 sec
Start 38: example_nmodl::nacum_hoc
117/276 Test #36: example_nmodl::hh1_hoc ................................................... Passed 0.14 sec
Start 39: example_nmodl::nadifl1_hoc
118/276 Test #37: example_nmodl::hhvect_hoc ................................................ Passed 0.14 sec
Start 40: example_nmodl::nadifl2_hoc
119/276 Test #38: example_nmodl::nacum_hoc ................................................. Passed 0.14 sec
Start 41: example_nmodl::nadifl3_hoc
120/276 Test #39: example_nmodl::nadifl1_hoc ............................................... Passed 0.16 sec
Start 42: example_nmodl::nadifl4_hoc
121/276 Test #40: example_nmodl::nadifl2_hoc ............................................... Passed 0.17 sec
Start 43: example_nmodl::obj_ex_hoc
122/276 Test #41: example_nmodl::nadifl3_hoc ............................................... Passed 0.17 sec
Start 44: example_nmodl::order_hoc
123/276 Test #42: example_nmodl::nadifl4_hoc ............................................... Passed 0.17 sec
Start 45: example_nmodl::passiv_hoc
124/276 Test #43: example_nmodl::obj_ex_hoc ................................................ Passed 0.14 sec
Start 46: example_nmodl::stim1_hoc
125/276 Test #44: example_nmodl::order_hoc ................................................. Passed 0.17 sec
Start 47: example_nmodl::syn1_hoc
126/276 Test #45: example_nmodl::passiv_hoc ................................................ Passed 0.14 sec
Start 48: example_nmodl::synpre_hoc
127/276 Test #46: example_nmodl::stim1_hoc ................................................. Passed 0.14 sec
Start 49: example_nmodl::tstextrn_hoc
128/276 Test #47: example_nmodl::syn1_hoc .................................................. Passed 0.15 sec
Start 50: example_nmodl::tstpnt1_hoc
129/276 Test #49: example_nmodl::tstextrn_hoc .............................................. Passed 0.13 sec
Start 51: example_nmodl::tstpnt2_hoc
130/276 Test #48: example_nmodl::synpre_hoc ................................................ Passed 0.21 sec
Start 52: example_nmodl::tstvec_hoc
131/276 Test #50: example_nmodl::tstpnt1_hoc ............................................... Passed 0.14 sec
Start 53: example_nmodl::cagkftab_py
132/276 Test #51: example_nmodl::tstpnt2_hoc ............................................... Passed 0.14 sec
Start 54: example_nmodl::expsynspine_py
133/276 Test #52: example_nmodl::tstvec_hoc ................................................ Passed 0.13 sec
Start 55: example_nmodl::nonlin_py
134/276 Test #54: example_nmodl::expsynspine_py ............................................ Passed 0.76 sec
Start 56: example_nmodl::tstpnt1_py
135/276 Test #56: example_nmodl::tstpnt1_py ................................................ Passed 0.52 sec
Start 57: example_nmodl::tstpnt2_py
136/276 Test #57: example_nmodl::tstpnt2_py ................................................ Passed 0.46 sec
Start 58: example_nmodl::vlag_py
137/276 Test #58: example_nmodl::vlag_py ................................................... Passed 0.48 sec
Start 59: hoctests::test_loadbal_hoc
138/276 Test #59: hoctests::test_loadbal_hoc ............................................... Passed 0.39 sec
Start 60: hoctests::perf1_hoc
139/276 Test #55: example_nmodl::nonlin_py ................................................. Passed 2.64 sec
Start 61: hoctests::test1_hoc
140/276 Test #61: hoctests::test1_hoc ...................................................... Passed 0.35 sec
Start 62: hoctests::test2_hoc
141/276 Test #62: hoctests::test2_hoc ...................................................... Passed 0.21 sec
Start 63: hoctests::test3_hoc
142/276 Test #63: hoctests::test3_hoc ...................................................... Passed 0.15 sec
Start 64: hoctests::test4_hoc
143/276 Test #64: hoctests::test4_hoc ...................................................... Passed 0.13 sec
Start 65: hoctests::test5_hoc
144/276 Test #65: hoctests::test5_hoc ...................................................... Passed 0.13 sec
Start 66: hoctests::test6_hoc
145/276 Test #66: hoctests::test6_hoc ...................................................... Passed 0.13 sec
Start 67: hoctests::test7_hoc
146/276 Test #67: hoctests::test7_hoc ...................................................... Passed 0.13 sec
Start 68: hoctests::test8_hoc
147/276 Test #68: hoctests::test8_hoc ...................................................... Passed 0.13 sec
Start 69: hoctests::test9_hoc
148/276 Test #60: hoctests::perf1_hoc ...................................................... Passed 1.49 sec
Start 70: hoctests::test_hocGUI2_py
149/276 Test #69: hoctests::test9_hoc ...................................................... Passed 0.13 sec
Start 71: hoctests::test_kschan_py
150/276 Test #53: example_nmodl::cagkftab_py ............................................... Passed 4.33 sec
Start 72: hoctests::test_mechfunc_py
151/276 Test #70: hoctests::test_hocGUI2_py ................................................ Passed 0.83 sec
Start 73: hoctests::test_mode_py
152/276 Test #72: hoctests::test_mechfunc_py ............................................... Passed 0.70 sec
Start 74: hoctests::test_neurondemo_py
153/276 Test #71: hoctests::test_kschan_py ................................................. Passed 0.85 sec
Start 75: hoctests::test_nrniv-launch_py
154/276 Test #75: hoctests::test_nrniv-launch_py ........................................... Passed 0.48 sec
Start 76: hoctests::test_setdata_py
155/276 Test #73: hoctests::test_mode_py ................................................... Passed 0.62 sec
Start 77: hoctests::test_shape_py
156/276 Test #74: hoctests::test_neurondemo_py ............................................. Passed 0.62 sec
Start 78: hoctests::test_thread_partition_py
157/276 Test #76: hoctests::test_setdata_py ................................................ Passed 0.72 sec
Start 79: hoctests::test1_py
158/276 Test #77: hoctests::test_shape_py .................................................. Passed 0.72 sec
Start 80: hoctests::test2_py
159/276 Test #78: hoctests::test_thread_partition_py ....................................... Passed 0.87 sec
Start 81: hoctests::test9_py
160/276 Test #79: hoctests::test1_py ....................................................... Passed 0.76 sec
Start 87: coreneuron_standalone::test_nrn_corenrn_standalone
161/276 Test #80: hoctests::test2_py ....................................................... Passed 0.78 sec
Start 88: nmodl_tests::test_table
162/276 Test #81: hoctests::test9_py ....................................................... Passed 0.76 sec
Start 89: nmodl_tests::test_disc
163/276 Test #88: nmodl_tests::test_table .................................................. Passed 0.97 sec
Start 90: nmodl_tests::test_function_table
164/276 Test #87: coreneuron_standalone::test_nrn_corenrn_standalone ....................... Passed 1.13 sec
Start 91: nmodl_tests::test_kinetic
165/276 Test #89: nmodl_tests::test_disc ................................................... Passed 0.93 sec
Start 92: coreneuron_modtests::version_macros
166/276 Test #90: nmodl_tests::test_function_table ......................................... Passed 0.94 sec
Start 94: coreneuron_modtests::fornetcon_py_cpu
167/276 Test #91: nmodl_tests::test_kinetic ................................................ Passed 0.90 sec
Start 95: coreneuron_modtests::direct_py_cpu
168/276 Test #92: coreneuron_modtests::version_macros ...................................... Passed 1.06 sec
Start 96: coreneuron_modtests::direct_hoc_cpu
169/276 Test #94: coreneuron_modtests::fornetcon_py_cpu .................................... Passed 1.01 sec
Start 97: coreneuron_modtests::spikes_py_cpu
170/276 Test #95: coreneuron_modtests::direct_py_cpu ....................................... Passed 0.98 sec
Start 98: coreneuron_modtests::spikes_file_mode_py_cpu
171/276 Test #96: coreneuron_modtests::direct_hoc_cpu ...................................... Passed 0.85 sec
Start 99: coreneuron_modtests::fast_imem_py_cpu
172/276 Test #98: coreneuron_modtests::spikes_file_mode_py_cpu ............................. Passed 0.88 sec
Start 100: coreneuron_modtests::datareturn_py_cpu
173/276 Test #97: coreneuron_modtests::spikes_py_cpu ....................................... Passed 0.91 sec
Start 101: coreneuron_modtests::test_units_py_cpu
174/276 Test #99: coreneuron_modtests::fast_imem_py_cpu .................................... Passed 1.08 sec
Start 102: coreneuron_modtests::test_netmove_py_cpu
175/276 Test #101: coreneuron_modtests::test_units_py_cpu ................................... Passed 0.76 sec
Start 103: coreneuron_modtests::test_pointer_py_cpu
176/276 Test #100: coreneuron_modtests::datareturn_py_cpu ................................... Passed 1.54 sec
Start 104: coreneuron_modtests::test_watchrange_py_cpu
177/276 Test #102: coreneuron_modtests::test_netmove_py_cpu ................................. Passed 1.45 sec
Start 105: coreneuron_modtests::test_psolve_py_cpu
178/276 Test #104: coreneuron_modtests::test_watchrange_py_cpu .............................. Passed 0.85 sec
Start 106: coreneuron_modtests::test_ba_py_cpu
179/276 Test #105: coreneuron_modtests::test_psolve_py_cpu .................................. Passed 0.98 sec
Start 107: coreneuron_modtests::test_natrans_py_cpu
180/276 Test #106: coreneuron_modtests::test_ba_py_cpu ...................................... Passed 0.66 sec
Start 110: nmodl_tests_coreneuron::test_table_coreneuron_cpu
181/276 Test #107: coreneuron_modtests::test_natrans_py_cpu ................................. Passed 1.10 sec
Start 111: nmodl_tests_coreneuron::test_disc_coreneuron_cpu
182/276 Test #103: coreneuron_modtests::test_pointer_py_cpu ................................. Passed 3.00 sec
Start 112: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu
183/276 Test #110: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................ Passed 0.82 sec
Start 113: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu
184/276 Test #111: nmodl_tests_coreneuron::test_disc_coreneuron_cpu ......................... Passed 0.88 sec
Start 114: modlunit_unitstest
185/276 Test #112: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ............... Passed 0.92 sec
Start 115: modlunit_hh
186/276 Test #113: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ...................... Passed 0.87 sec
Start 116: modlunit_stim
187/276 Test #114: modlunit_unitstest ....................................................... Passed 0.21 sec
Start 117: modlunit_pattern
188/276 Test #115: modlunit_hh .............................................................. Passed 0.16 sec
Start 118: pyinit::nrniv_script.py
189/276 Test #116: modlunit_stim ............................................................ Passed 0.10 sec
Start 119: pyinit::nrniv_script.py_error
190/276 Test #117: modlunit_pattern ......................................................... Passed 0.08 sec
Start 120: pyinit::nrniv_two_scripts.py
191/276 Test #119: pyinit::nrniv_script.py_error ............................................ Passed 0.12 sec
Start 121: pyinit::nrniv_two_scripts.py_error_check_code
192/276 Test #118: pyinit::nrniv_script.py .................................................. Passed 0.13 sec
Start 122: pyinit::nrniv_two_scripts.py_error_check_output
193/276 Test #120: pyinit::nrniv_two_scripts.py ............................................. Passed 0.13 sec
Start 123: pyinit::nrniv_python_command
194/276 Test #121: pyinit::nrniv_two_scripts.py_error_check_code ............................ Passed 0.12 sec
Start 124: pyinit::nrniv_python_command_error
195/276 Test #122: pyinit::nrniv_two_scripts.py_error_check_output .......................... Passed 0.12 sec
Start 125: pyinit::nrniv_python_script.py
196/276 Test #123: pyinit::nrniv_python_command ............................................. Passed 0.13 sec
Start 126: pyinit::nrniv_python_script.py_error
197/276 Test #124: pyinit::nrniv_python_command_error ....................................... Passed 0.13 sec
Start 127: pyinit::nrniv_python_command_twice
198/276 Test #125: pyinit::nrniv_python_script.py ........................................... Passed 0.13 sec
Start 128: pyinit::nrniv_python_script.py_twice
199/276 Test #126: pyinit::nrniv_python_script.py_error ..................................... Passed 0.13 sec
Start 129: pyinit::nrniv_python_command_args
200/276 Test #127: pyinit::nrniv_python_command_twice ....................................... Passed 0.13 sec
Start 130: pyinit::nrniv_python_script.py_args
201/276 Test #128: pyinit::nrniv_python_script.py_twice ..................................... Passed 0.13 sec
Start 131: pyinit::nrniv_nopython_PythonObject
202/276 Test #129: pyinit::nrniv_python_command_args ........................................ Passed 0.13 sec
Start 132: pyinit::nrniv_nopython_PythonObject_pyexe
203/276 Test #131: pyinit::nrniv_nopython_PythonObject ...................................... Passed 0.11 sec
Start 133: pyinit::nrniv_nopython_PythonObject_pyenv
204/276 Test #130: pyinit::nrniv_python_script.py_args ...................................... Passed 0.13 sec
Start 134: pyinit::nrniv_py3.10_python_command_version_check
205/276 Test #132: pyinit::nrniv_nopython_PythonObject_pyexe ................................ Passed 0.11 sec
Start 135: pyinit::nrniv_py3.10_python_check_sys_path
206/276 Test #133: pyinit::nrniv_nopython_PythonObject_pyenv ................................ Passed 0.11 sec
Start 137: pyinit::nrniv_py3.10_nrnpython_check_sys_path
207/276 Test #134: pyinit::nrniv_py3.10_python_command_version_check ........................ Passed 0.13 sec
Start 139: pyinit::nrniv_py3.10_python_check_sys_prefix
208/276 Test #135: pyinit::nrniv_py3.10_python_check_sys_path ............................... Passed 0.13 sec
Start 141: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix
209/276 Test #137: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................ Passed 0.13 sec
Start 143: pyinit::nrniv_py3.10_python_check_sys_exec_prefix
210/276 Test #139: pyinit::nrniv_py3.10_python_check_sys_prefix ............................. Passed 0.13 sec
Start 145: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix
211/276 Test #141: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix .......................... Passed 0.13 sec
Start 147: pyinit::nrniv_py3.10_python_check_sys_base_prefix
212/276 Test #143: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................ Passed 0.13 sec
Start 149: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix
213/276 Test #145: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix ..................... Passed 0.13 sec
Start 151: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix
214/276 Test #147: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................ Passed 0.13 sec
Start 153: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix
215/276 Test #149: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix ..................... Passed 0.13 sec
Start 155: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding
216/276 Test #151: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ................... Passed 0.13 sec
Start 157: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding
217/276 Test #153: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................ Passed 0.13 sec
Start 159: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding
218/276 Test #155: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding .................... Passed 0.13 sec
Start 161: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding
219/276 Test #157: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding ................. Passed 0.13 sec
Start 163: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding
220/276 Test #159: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding ..................... Passed 0.13 sec
Start 165: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding
221/276 Test #161: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding .................. Passed 0.13 sec
Start 167: pyinit::nrniv_py3.10_python_command_import_neuron
222/276 Test #163: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding .................... Passed 0.13 sec
Start 168: pyinit::py3.10_command_import_neuron
223/276 Test #165: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding ................. Passed 0.13 sec
Start 169: pyinit::nrniv_py3.10_hoc_command_nrnpython
224/276 Test #169: pyinit::nrniv_py3.10_hoc_command_nrnpython ............................... Passed 0.33 sec
Start 170: pyinit::nrniv_pydef_python_command_version_check
225/276 Test #167: pyinit::nrniv_py3.10_python_command_import_neuron ........................ Passed 0.61 sec
Start 171: pyinit::nrniv_pydef_python_check_sys_path
226/276 Test #170: pyinit::nrniv_pydef_python_command_version_check ......................... Passed 0.15 sec
Start 173: pyinit::nrniv_pydef_nrnpython_check_sys_path
227/276 Test #168: pyinit::py3.10_command_import_neuron ..................................... Passed 0.62 sec
Start 175: pyinit::nrniv_pydef_python_check_sys_prefix
228/276 Test #171: pyinit::nrniv_pydef_python_check_sys_path ................................ Passed 0.13 sec
Start 177: pyinit::nrniv_pydef_nrnpython_check_sys_prefix
229/276 Test #173: pyinit::nrniv_pydef_nrnpython_check_sys_path ............................. Passed 0.13 sec
Start 179: pyinit::nrniv_pydef_python_check_sys_exec_prefix
230/276 Test #175: pyinit::nrniv_pydef_python_check_sys_prefix .............................. Passed 0.13 sec
Start 181: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix
231/276 Test #177: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ........................... Passed 0.13 sec
Start 183: pyinit::nrniv_pydef_python_check_sys_base_prefix
232/276 Test #179: pyinit::nrniv_pydef_python_check_sys_exec_prefix ......................... Passed 0.13 sec
Start 185: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix
233/276 Test #181: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ...................... Passed 0.13 sec
Start 187: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix
234/276 Test #185: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ...................... Passed 0.13 sec
Start 189: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix
235/276 Test #183: pyinit::nrniv_pydef_python_check_sys_base_prefix ......................... Passed 0.14 sec
Start 191: pyinit::nrniv_pydef_python_check_sys_stderr.encoding
236/276 Test #187: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix .................... Passed 0.13 sec
Start 193: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding
237/276 Test #189: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix ................. Passed 0.13 sec
Start 195: pyinit::nrniv_pydef_python_check_sys_stdin.encoding
238/276 Test #191: pyinit::nrniv_pydef_python_check_sys_stderr.encoding ..................... Passed 0.13 sec
Start 197: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding
239/276 Test #193: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding .................. Passed 0.13 sec
Start 199: pyinit::nrniv_pydef_python_check_sys_stdout.encoding
240/276 Test #195: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ...................... Passed 0.13 sec
Start 201: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding
241/276 Test #197: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ................... Passed 0.13 sec
Start 203: pyinit::nrniv_pydef_python_command_import_neuron
242/276 Test #199: pyinit::nrniv_pydef_python_check_sys_stdout.encoding ..................... Passed 0.13 sec
Start 204: pyinit::pydef_command_import_neuron
243/276 Test #201: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding .................. Passed 0.13 sec
Start 205: pyinit::nrniv_pydef_hoc_command_nrnpython
244/276 Test #205: pyinit::nrniv_pydef_hoc_command_nrnpython ................................ Passed 0.37 sec
Start 206: external_nrntest
245/276 Test #203: pyinit::nrniv_pydef_python_command_import_neuron ......................... Passed 0.60 sec
Start 226: testcorenrn_bbcore::compare_results
246/276 Test #204: pyinit::pydef_command_import_neuron ...................................... Passed 0.59 sec
Start 232: testcorenrn_conc::compare_results
247/276 Test #232: testcorenrn_conc::compare_results ........................................ Passed 0.16 sec
Start 238: testcorenrn_deriv::compare_results
248/276 Test #226: testcorenrn_bbcore::compare_results ...................................... Passed 0.19 sec
Start 244: testcorenrn_gf::compare_results
249/276 Test #238: testcorenrn_deriv::compare_results ....................................... Passed 0.02 sec
Start 250: testcorenrn_kin::compare_results
250/276 Test #244: testcorenrn_gf::compare_results .......................................... Passed 0.02 sec
Start 255: testcorenrn_patstim::compare_results
251/276 Test #250: testcorenrn_kin::compare_results ......................................... Passed 0.02 sec
Start 261: testcorenrn_vecplay::compare_results
252/276 Test #255: testcorenrn_patstim::compare_results ..................................... Passed 0.02 sec
Start 273: testcorenrn_watch::compare_results
253/276 Test #261: testcorenrn_vecplay::compare_results ..................................... Passed 0.02 sec
Start 276: testcorenrn_netstimdirect::compare_results
254/276 Test #273: testcorenrn_watch::compare_results ....................................... Passed 0.02 sec
255/276 Test #276: testcorenrn_netstimdirect::compare_results ............................... Passed 0.02 sec
Start 83: parallel::partrans
256/276 Test #83: parallel::partrans ....................................................... Passed 0.95 sec
Start 84: parallel::netpar
257/276 Test #84: parallel::netpar ......................................................... Passed 0.90 sec
Start 85: parallel::bas
258/276 Test #85: parallel::bas ............................................................ Passed 3.51 sec
Start 86: parallel::nrntest_fast
259/276 Test #86: parallel::nrntest_fast ................................................... Passed 1.30 sec
Start 93: coreneuron_modtests::inputpresyn_py
260/276 Test #93: coreneuron_modtests::inputpresyn_py ...................................... Passed 0.93 sec
Start 108: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
261/276 Test #108: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ......................... Passed 1.07 sec
262/276 Test #206: external_nrntest ......................................................... Passed 42.20 sec
Start 266: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
263/276 Test #266: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................ Passed 0.34 sec
Start 207: reduced_dentate::neuron
264/276 Test #207: reduced_dentate::neuron .................................................. Passed 40.03 sec
Start 208: reduced_dentate::coreneuron_cpu
265/276 Test #208: reduced_dentate::coreneuron_cpu .......................................... Passed 32.44 sec
Start 218: external_ringtest::coreneuron_cpu_mpi_threads
266/276 Test #218: external_ringtest::coreneuron_cpu_mpi_threads ............................ Passed 1.02 sec
Start 219: external_ringtest::coreneuron_cpu_mpi_threads_python
267/276 Test #219: external_ringtest::coreneuron_cpu_mpi_threads_python ..................... Passed 1.18 sec
Start 262: testcorenrn_vecevent::neuron
268/276 Test #262: testcorenrn_vecevent::neuron ............................................. Passed 0.33 sec
Start 263: testcorenrn_vecevent::coreneuron_cpu_online
269/276 Test #263: testcorenrn_vecevent::coreneuron_cpu_online .............................. Passed 0.63 sec
Start 264: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
270/276 Test #264: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ............. Passed 0.68 sec
Start 265: testcorenrn_vecevent::coreneuron_cpu_offline
271/276 Test #265: testcorenrn_vecevent::coreneuron_cpu_offline ............................. Passed 0.28 sec
Start 82: parallel::subworld
272/276 Test #82: parallel::subworld ....................................................... Passed 1.15 sec
Start 109: coreneuron_modtests::test_subworlds_py_cpu
273/276 Test #109: coreneuron_modtests::test_subworlds_py_cpu ............................... Passed 1.82 sec
Start 209: reduced_dentate::compare_results
Start 220: external_ringtest::compare_results
Start 267: testcorenrn_vecevent::compare_results
274/276 Test #209: reduced_dentate::compare_results ......................................... Passed 0.02 sec
275/276 Test #267: testcorenrn_vecevent::compare_results .................................... Passed 0.02 sec
276/276 Test #220: external_ringtest::compare_results ....................................... Passed 0.02 sec
100% tests passed, 0 tests failed out of 276
Total Test time (real) = 172.88 sec
$ cmake --build . --target install
[0/2] Re-checking globbed directories...
[1/5] Update hh.mod for CoreNEURON compatibility
[2/5] Generating help_data.dat
[3/5] cd /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[4/5] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn" is shallow and may cause errors
warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:running build_scripts
[4/5] Install the project...
-- Install configuration: "Custom"
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libsymtab.a
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/librxdmath.dylib
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libnrniv.dylib
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libnrngnu.a
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libvisitor.a
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/hclass3.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/hoc.cpython-310-darwin.so
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/expect_hocerr.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/psection.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/neuroml
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/neuroml/metadata.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/neuroml/morphml.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/neuroml/xml2nrn.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/neuroml/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/neuroml/neuroml.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/neuroml/rdxml.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/neuroml/biophysics.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/config.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/units.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/sections.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdException.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/options.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/plugins.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdsection.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/species.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdmath.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/rate.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/region.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/multiCompartmentReaction.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/constants.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/dimension3.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/section1d.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/export.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/initializer.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/rangevar.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/geometry.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxd.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/generalizedReaction.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/nodelist.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/node.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/gui.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/rxd/reaction.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/tests
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/tests/_subclass.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/tests/test_all.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/tests/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/tests/utils
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/strtobool.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/capture_stdout.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/checkresult.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/tests/test_neuron.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/tests/test_vector.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/tests/test_rxd.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/_config_params.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/coreneuron.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/doc.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/gui2
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/gui2/setup_threejs.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/gui2/config.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/gui2/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/gui2/rangevar.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/gui2/plotshape.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/gui2/utilities.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/crxd
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/crxd/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/help_data.dat
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/gui.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/nonvint_block_supervisor.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libspdlog.a
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libfmt.a
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/dsl.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/symtab.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext/example
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext/example/passive.mod
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext/example/expsyn.mod
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext/example/exp2syn.mod
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext/example/hh.mod
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext/viz
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext/viz/index.html
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext/viz/css
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext/viz/css/tree.css
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js/d3.min.js
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js/tree.js
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/visitor.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ast.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/ode.py
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/nmodl/_nmodl.cpython-310-darwin.so
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libpywrapper.a
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/liblexer.a
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libsparse13.a
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libpyembed.a
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libcoreneuron-core.a
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libcodegen.a
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libutil.a
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/crout_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron/cache
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron/cache/mechanism_range.hpp
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron/container
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron/container/non_owning_soa_identifier.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include//coreneuron/permute/data_layout.hpp
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/coreneuron/mod_func.c.pl
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/coreneuron/enginemech.cpp
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/nmodl
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/nrniv-core
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/coreneuron/coreneuron.cpp
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libcorenrnmech_internal.dylib
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron/cache
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron/cache/mechanism_range.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron/container
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron/container/non_owning_soa_identifier.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron/container/data_handle.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron/container/generic_data_handle.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron/model_data_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnrandom.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/hocassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/multicore.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/wrap_sprintf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/simeq.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/ocmisc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/multisplit.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/oc_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/hoclist.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/membfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnversionmacros.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/scoplib.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/sparse.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/membdef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/neuron.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/newton
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/newton/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrncvode
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrncvode/nrnneosm.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/bbsavestate.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nmodlmutex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/euler_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/hocdec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/hocgetsym.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/euler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/options.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/CholmodSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/StdVector
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/StdDeque
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/Core
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/QtAlignedMalloc
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/Dense
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/QR
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/ConjHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc/math_constants.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/InteropHeaders.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Array.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/SolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/AssignEvaluator.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Replicate.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/CoreIterators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Block.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Dot.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/PlainObjectBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/GeneralProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/SolveTriangular.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/CoreEvaluators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseNullaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorwiseOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayWrapper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/BooleanRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Transpositions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/NestByValue.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Ref.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Reshaped.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Transpose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Redux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/NumTraits.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/CommaInitializer.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/GlobalFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Random.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Diagonal.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseTernaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Select.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_kernel_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_gemm_kernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Structs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pruneL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pivotL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLUImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Ordering.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Eigen_Colamd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Amd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/BlockMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/IndexedViewMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/ReshapedMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Householder/HouseholderSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Householder/Householder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Householder/BlockHouseholder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport/PardisoSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/CompressedStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseColEtree.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTriangularView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseAssign.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparsePermutation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMap.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDenseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseFuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/MappedSparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/TriangularSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCompressedBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDot.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Jacobi/Jacobi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SVD
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/StlSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnapi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrncvode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnsemanticversion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/spmatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/ocfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/section_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/row_view.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/hoc_membf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/backtrace_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnisaac.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/parse_with_deps.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/cspredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/dimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrniv_mf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrn_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/deflate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/errcodes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/spconfig.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/runge.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnoc_ml.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/mech_api.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/mcran4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/hocparse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/ssimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/threefry.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/conventional
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/philox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/gsl_microrng.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/aes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/array.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/u01fixedpt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/boxmuller.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/uniform.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/ars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/crout
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/crout/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/treeset.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/cspmatrix.h
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/modfile
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/modfile/stim.mod
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/modfile/passive.mod
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/modfile/expsyn.mod
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/modfile/svclmp.mod
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/modfile/exp2syn.mod
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/modfile/netstim.mod
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/modfile/hh.mod
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/modfile/pattern.mod
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/coreneuron/nrnivmodl_core_makefile
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/nrnivmodl-core
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/nrniv
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/nocmodl
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/modlunit
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/libnrniv.dylib
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/nrnmain.cpp
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/nrngui
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/neurondemo
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/nrnivmodl
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/nrnmech_makefile
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/sortspike
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/mkthreadsafe
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/nrnpyenv.sh
-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/bin/set_nrnpyenv.sh
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/librxdmath.dylib
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/hclass3.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/hoc.cpython-310-darwin.so
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/expect_hocerr.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/psection.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/neuroml
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/neuroml/metadata.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/neuroml/morphml.py
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/lib/python/neuron/neuroml/xml2nrn.py
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-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/fitparm.hoc
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-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/eonefunc.hoc
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-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/lib/prologue.id
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-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo
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-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/sync
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-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/sync/spkplot.hoc
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-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/singhh.hoc
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-- Installing: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/reconst.hoc
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/StlFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/NullaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/BandMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Inverse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign_MKL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Swap.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Matrix.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/StableNorm.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/GenericPacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseBinaryOp.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/TypeCasting.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/CUDA
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/TypeCasting.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc/math_constants.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/TypeCasting.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MathFunctions.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Array.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/SolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/AssignEvaluator.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayBase.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseNullaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorwiseOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayWrapper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/BooleanRedux.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/NestByValue.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Transpose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Redux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/NumTraits.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/CommaInitializer.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/GlobalFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Random.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Diagonal.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseTernaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Core/Select.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Utils.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_gemm_kernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Structs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pruneL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pivotL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLUImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Ordering.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Eigen_Colamd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Amd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/BlockMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/IndexedViewMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/ReshapedMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Householder/HouseholderSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Householder/Householder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Householder/BlockHouseholder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport
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-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/CompressedStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseColEtree.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTriangularView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseAssign.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparsePermutation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMap.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDenseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseFuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/MappedSparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/TriangularSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCompressedBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDot.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Jacobi/Jacobi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SVD
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/StlSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Eigen/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnapi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrncvode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnsemanticversion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/spmatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/ocfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/section_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/row_view.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/hoc_membf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/backtrace_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnisaac.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/parse_with_deps.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/cspredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/dimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrniv_mf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrn_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/deflate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/errcodes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/spconfig.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/runge.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/nrnoc_ml.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/mech_api.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/mcran4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/hocparse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/ssimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/open64features.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/sse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/threefry.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/conventional
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/philox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/gsl_microrng.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/aes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/array.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/u01fixedpt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/boxmuller.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/uniform.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/Random123/ars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/crout
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/crout/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/treeset.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/include/cspmatrix.h
.: replacing existing signature
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"install" of folder "nrn" of folder "cellular" of folder "hpc" of folder "J986145" of folder "P164985" of folder "0" of folder "builds" of folder "gitlab-runner" of folder "Users"
35:57: execution error: Finder got an error: AppleEvent timed out. (-1712)
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"
Creating 'arm64' directory for .o files.
MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
-> Compiling mod_func.cpp
-> NMODL ../cabpump.mod
-> NMODL ../cachan1.mod
-> NMODL ../camchan.mod
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cachan1.cpp
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cabpump.cpp
Translating camchan.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/camchan.cpp
Thread Safe
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Thread Safe
-> NMODL ../capump.mod
-> NMODL ../invlfire.mod
-> NMODL ../khhchan.mod
Translating capump.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/capump.cpp
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/invlfire.cpp
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
Thread Safe
Thread Safe
-> NMODL ../nacaex.mod
-> NMODL ../nachan.mod
-> NMODL ../release.mod
-> Compiling cabpump.cpp
Translating nachan.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nachan.cpp
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
Thread Safe
-> Compiling camchan.cpp
-> Compiling cachan1.cpp
Translating release.mod into /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/release.cpp
Thread Safe
-> Compiling capump.cpp
-> Compiling invlfire.cpp
-> Compiling khhchan.cpp
-> Compiling nacaex.cpp
-> Compiling nachan.cpp
-> Compiling release.cpp
=> LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
NEURON -- VERSION + HEAD (8e56a39+) 2023-10-25
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2022
See http://neuron.yale.edu/neuron/credits
Additional mechanisms from files
"cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"
$ export PATH=${INSTALL_DIR}/bin:${PATH}
$ export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python/
$ if [[ -f "${INSTALL_DIR}/bin/nrn-enable-sanitizer" ]]; then
$ echo --- bin/nrn-enable-sanitizer ---
--- bin/nrn-enable-sanitizer ---
$ cat bin/nrn-enable-sanitizer
#!/usr/bin/env bash
prefix="${NRNHOME:-/Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/install}"
export NRN_SANITIZER_PRELOAD_VAR=DYLD_INSERT_LIBRARIES
export NRN_SANITIZER_PRELOAD_VAL=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
if [[ "$1" == "--preload" ]]; then
shift
if [[ "$1" == "python" ]]; then
# nrn-enable-sanitizer --preload python is used in the CI, but for it to
# work on macOS we need to substitute the real Python binary in place of any
# shims. This is done from CMake, and PYTHON_EXECUTABLE contains the real
# binary.
shift
DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 /Users/gitlab-runner/builds/0/P164985/J986145/hpc/cellular/nrn/venv/bin/python "$@"
else
DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@"
fi
else
MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@"
fi
$ echo ---
---
$ nrn_enable_sanitizer=${INSTALL_DIR}/bin/nrn-enable-sanitizer
$ nrn_enable_sanitizer_preload="${nrn_enable_sanitizer} --preload"
$ else
$ $PYTHON --version && ${nrn_enable_sanitizer_preload} python -c 'import neuron; neuron.test()'
Python 3.10.8
testAssignmentSlicing (neuron.tests.test_vector.VectorTestCase) ... ok
testBytesize (neuron.tests.test_vector.VectorTestCase)
Test that Vector.__array_interface__ returns the proper bytesize (of a double) ... ok
testEndian (neuron.tests.test_vector.VectorTestCase)
Test that Vector.__array_interface__ returns the proper byteorder (endian) ... ok
testErrorHandling (neuron.tests.test_vector.VectorTestCase) ... ok
testNegativeIndex (neuron.tests.test_vector.VectorTestCase) ... ok
testNumpyInteraction (neuron.tests.test_vector.VectorTestCase)
Testing numpy.array <=> hoc.Vector interaction ... ok
testPerformance (neuron.tests.test_vector.VectorTestCase)
Test performance of Vector<->list,array ... ok
testSlicing (neuron.tests.test_vector.VectorTestCase) ... ok
testABI (neuron.tests.test_neuron.NeuronTestCase)
Test use of some Py_LIMITED_API for python3. ... ok
testExtendedSection (neuron.tests.test_neuron.NeuronTestCase) ...
Executed "l = range(1000000)". Elapsed = 0.000028 s
Executed "v = h.Vector(l)". Elapsed = 0.046114 s
inplace:
Executed "v.from_python(l)". Elapsed = 0.042801 s
Executed "a = numpy.array(v)". Elapsed = 0.003511 s
inplace:
Executed "v.to_python(a)". Elapsed = 0.000825 s
Executed "v2 = h.Vector(a)". Elapsed = 0.003115 s
inplace:
Executed "v2.from_python(a)". Elapsed = 0.000783 s
Executed "l2 = list(v2)". Elapsed = 0.039258 s
inplace:
Executed "v.to_python(l2)". Elapsed = 0.006791 s
Executed "v2 = h.Vector(a[::-1])". Elapsed = 0.003143 s
Executed "a2 = numpy.array(v2)". Elapsed = 0.003311 s
test: ok
testHClass (neuron.tests.test_neuron.NeuronTestCase)
Test subclass of hoc class. ... ok
testHelp (neuron.tests.test_neuron.NeuronTestCase) ... ok
testIterators (neuron.tests.test_neuron.NeuronTestCase)
Test section, segment, mechanism, rangevar iterators. ... ok
testRxDexistence (neuron.tests.test_neuron.NeuronTestCase) ... ok
testSectionArgOrder (neuron.tests.test_neuron.NeuronTestCase)
First optional arg for Section is name (but name="name" is recommended) ... ok
testSectionCell (neuron.tests.test_neuron.NeuronTestCase)
Section.cell() internally referenced as weakref. ... ok
testSectionListIterator (neuron.tests.test_neuron.NeuronTestCase)
As of v8.0, iteration over a SectionList does not change the cas ... ok
test_newobj_err (neuron.tests.test_neuron.NeuronTestCase)
Test deletion of incompletely constructed objects ... NEURON: generate an error
near line 1
ob = new NewObj(1, 2)
^
NewObj[4].execerror("generate a...")
NewObj[4].init(0, 2)
NewObj[3].init(1, 2)
NewObj[2].execute1("ob = new N...", NewObj[2])
and others
ok
testpsection (neuron.tests.test_neuron.NeuronTestCase) ... Syntax:
.. code-block::
python
h.xpanel('name')
h.xpanel('name', [0-1])
h.xpanel()
h.xpanel(x, y)
h.xpanel(scroll)
h.xpanel(scroll, x, y)
Description:
``h.xpanel("name")``
``h.xpanel("name", [0-1])``
Title of a new panel. Every
button, menu, and value between this and a closing ``xpanel()`` command
with no arguments (or placement args) belongs to this panel.
If the form is used with a second argument equal to 1, then
the panel is laid out horizontally. Otherwise the default is vertically.
``h.xpanel()``
``h.xpanel(x, y)``
done constructing the panel. so map it to the screen with position
optionally specified.
``h.xpanel(scroll)``
``h.xpanel(scroll, x, y)``
as above but if the first arg is a number, then the value determines
whether the panel will be inside a scrollbox. Scroll = 0 means a scrollbox
will NOT be used. Scroll = 1 means the panel will be inside a scrollbox.
Scroll = -1 is the default value and whether or not a scrollbox is used
is determined by the number of panel items in comparison with the
value of the panel_scroll property in the nrn.defaults file.
Skipping because NRN_ENABLE_RX3D=False
#NewObj and #Foo in existence 3 6
after del a #NewObj and #Foo in existence 0 0
ok
----------------------------------------------------------------------
Ran 19 tests in 1.716s
OK
$ if [[ ! "${cmake_args[*]}" =~ "NRN_ENABLE_RX3D=OFF" && ! "${cmake_args[*]}" =~ "NRN_ENABLE_CORENEURON=ON" ]]; then
section_end:1698282005:step_script section_start:1698282005:archive_cache Saving cache for successful job
Creating cache mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-update_find_parent_seg-1-non_protected...
Runtime platform  arch=arm64 os=darwin pid=12058 revision=43b2dc3d version=15.4.0
./ccache: found 2466 matching files and directories
No URL provided, cache will not be uploaded to shared cache server. Cache will be stored only locally.
Created cache
section_end:1698282010:archive_cache section_start:1698282010:cleanup_file_variables Cleaning up project directory and file based variables
section_end:1698282010:cleanup_file_variables Job succeeded
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1698281492:resolve_secrets Resolving secrets
section_end:1698281492:resolve_secrets section_start:1698281492:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2721284715, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 164985, build ref , job ID 986146
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P164985, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J986146_PROD_P2160_CP0_C1
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1860316
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section_end:1698285092:prepare_executor ERROR: Job failed: execution took longer than 1h0m0s seconds

Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
Log was not fetched because job had status: skipped
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