Created
June 17, 2024 19:59
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/217459 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2909.
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1718651188:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1718651188:resolve_secrets [0Ksection_start:1718651188:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor640632587, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 217459, build ref , job ID 1322182 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1322182_PROD_P2160_CP1_C11 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2255646 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322182_PROD_P2160_CP1_C11 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459 --ntasks=2 --jobid=2255646 --cpus-per-task=8 --mem=160G | |
| section_end:1718651189:prepare_executor [0Ksection_start:1718651189:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n12 via bbpv1.epfl.ch... | |
| section_end:1718651192:prepare_script [0Ksection_start:1718651192:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1718651193:get_sources [0Ksection_start:1718651193:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=41085 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1718651200:restore_cache [0Ksection_start:1718651200:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1322181)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=42555 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1322181 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1718651201:download_artifacts [0Ksection_start:1718651201:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459/J1322182_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2255646/ccache | |
| Config file: /nvme/bbpcihpcproj12/2255646/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Mon Jun 17 21:06:47 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (90.13%) | |
| Files: 10510 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| Concretized | |
| -------------------------------- | |
| - sghrr3b neuron@git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - fz3oxtc ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt | |
| ==> Installing neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z [49/49] | |
| ==> No binary for neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 2: | |
| 'make' '-j8' | |
| 24 errors found in build log: | |
| 2757 [ 35%] Built target coreneuron-for-tests | |
| 2758 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage | |
| _externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak | |
| e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3 | |
| c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d | |
| 5fefjx2z/spack-build-sghrr3b/bin/nrnivmodl-core -b STATIC -m /gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/i | |
| nstall_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46 | |
| 770aa12665_develop-53hy2e/bin/nmodl -n internal -p 4 . | |
| 2759 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi | |
| 5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/bin', compiling default o | |
| nes only! | |
| 2760 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe | |
| fjx2z/spack-build-sghrr3b MECHLIB_SUFFIX=internal NMODL_BINARY=/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software | |
| /install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d | |
| 46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod | |
| 2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 2761 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn | |
| dfp4mhu3d5fefjx2z/spack-build-sghrr3b/bin' | |
| 2762 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 2763 make[3]: xcrun: No such file or directory | |
| 2764 Default NMODL flags: | |
| >> 2765 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 2766 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2767 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2768 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2769 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 2770 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b' | |
| 2771 [ 35%] Built target nrnpython | |
| ... | |
| 3686 Mod files: "./follower.mod" "./gap.mod"[ 49%] Building CXX object | |
| src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o | |
| 3687 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322179/spack/lib/spack/env/oneapi/icpx -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP | |
| ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717b | |
| a3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu | |
| 3d5fefjx2z/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi | |
| 5cndfp4mhu3d5fefjx2z/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spac | |
| k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo | |
| p-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrniv -I/gpfs/bbp | |
| .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack | |
| -build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72a | |
| d175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrnoc | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J13 | |
| 22182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a | |
| 9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src | |
| /src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102 | |
| ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/s | |
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| cproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba | |
| 3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3 | |
| d5fefjx2z/spack-build-sghrr3b/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack | |
| -stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop | |
| -sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/src/nrnoc -I | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322 | |
| 182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99 | |
| 71c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build | |
| -sghrr3b/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.77 | |
| 17ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4 | |
| mhu3d5fefjx2z/spack-build-sghrr3b/src/oc -I/gpfs/bbp.cscs.ch/ssd/g | |
| itlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-s | |
| tage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-s | |
| ghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/src/parallel - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J132 | |
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| 971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-buil | |
| d-sghrr3b/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.77 | |
| 17ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4 | |
| mhu3d5fefjx2z/spack-build-sghrr3b/src/sundials/shared -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack- | |
| build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad | |
| 175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src -I/gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/s | |
| pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59 | |
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| u -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J | |
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| 5a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-s | |
| rc/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389 | |
| f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fef | |
| jx2z/spack-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron- | |
| git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5 | |
| cndfp4mhu3d5fefjx2z/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack | |
| -stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop | |
| -sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/scopmath -I/gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spa | |
| ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7 | |
| 2ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/spar | |
| se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/ | |
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| 55a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack- | |
| src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp | |
| roj12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c | |
| 389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5 | |
| fefjx2z/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuro | |
| n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgp | |
| i5cndfp4mhu3d5fefjx2z/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-bu | |
| ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17 | |
| 5_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/sundials/ | |
| ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459 | |
| /J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4 | |
| 055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack | |
| -src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git. | |
| 7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndf | |
| p4mhu3d5fefjx2z/spack-build-sghrr3b/src/nrniv/oc_generated -I/gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/s | |
| pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59 | |
| c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/iv | |
| os -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/ | |
| J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40 | |
| 55a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack- | |
| src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717 | |
| ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mh | |
| u3d5fefjx2z/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/ | |
| gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack- | |
| stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop- | |
| sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrnpython/../nrnoc | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J13 | |
| 22182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a | |
| 9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src | |
| /src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.77 | |
| 17ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4 | |
| mhu3d5fefjx2z/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/s | |
| pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev | |
| elop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrnpython/../n | |
| rnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174 | |
| 59/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd | |
| f4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spa | |
| ck-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024 | |
| -02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj | |
| 4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuro | |
| n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgp | |
| i5cndfp4mhu3d5fefjx2z/spack-src/external/eigen -march=skylake -mtu | |
| ne=skylake -fopenmp-simd -g -O1 -fp-model precise -std=c++17 -pth | |
| read -MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o - | |
| MF CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o.d -o CMakeFiles/nrniv | |
| .dir/__/oc/ockludge.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn | |
| dfp4mhu3d5fefjx2z/spack-src/src/oc/ockludge.cpp | |
| 3688 "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
| 3689 | |
| 3690 Creating 'x86_64' directory for .o files. | |
| 3691 | |
| >> 3692 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta | |
| ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s | |
| ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu | |
| ptools.installer and fetch_build_eggs are deprecated. | |
| 3693 !! | |
| 3694 | |
| 3695 ********************************************************** | |
| ********************** | |
| 3696 Requirements should be satisfied by a PEP 517 installer. | |
| 3697 If you are using pip, you can try `pip install --use-pep51 | |
| 7`. | |
| 3698 ********************************************************** | |
| ********************** | |
| ... | |
| 3701 dist.fetch_build_eggs(dist.setup_requires) | |
| 3702 WARNING:root:WARNING: The wheel package is not available. | |
| 3703 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver | |
| sion_macros.o | |
| 3704 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe | |
| fjx2z/spack-build-sghrr3b MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 3705 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn | |
| dfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/c448d279dd3b9 | |
| 1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0' | |
| 3706 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 3707 make[3]: xcrun: No such file or directory | |
| 3708 Default NMODL flags: | |
| >> 3709 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 3710 [ 49%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/mo | |
| dlreg.cpp.o | |
| 3711 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322179/spack/lib/spack/env/oneapi/icpx -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP | |
| ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717b | |
| a3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu | |
| 3d5fefjx2z/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi | |
| 5cndfp4mhu3d5fefjx2z/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spac | |
| k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo | |
| p-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrniv -I/gpfs/bbp | |
| .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack | |
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| d175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrnoc | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J13 | |
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| /src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102 | |
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| cproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba | |
| 3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3 | |
| d5fefjx2z/spack-build-sghrr3b/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack | |
| -stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop | |
| -sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/src/nrnoc -I | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322 | |
| 182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99 | |
| 71c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build | |
| -sghrr3b/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.77 | |
| 17ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4 | |
| mhu3d5fefjx2z/spack-build-sghrr3b/src/oc -I/gpfs/bbp.cscs.ch/ssd/g | |
| itlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-s | |
| tage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-s | |
| ghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/src/parallel - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J132 | |
| 2182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9 | |
| 971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-buil | |
| d-sghrr3b/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.77 | |
| 17ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4 | |
| mhu3d5fefjx2z/spack-build-sghrr3b/src/sundials/shared -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack- | |
| build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad | |
| 175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src -I/gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/s | |
| pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59 | |
| c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/gn | |
| u -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J | |
| 1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405 | |
| 5a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-s | |
| rc/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389 | |
| f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fef | |
| jx2z/spack-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron- | |
| git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5 | |
| cndfp4mhu3d5fefjx2z/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack | |
| -stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop | |
| -sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/scopmath -I/gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spa | |
| ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7 | |
| 2ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/spar | |
| se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/ | |
| J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40 | |
| 55a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack- | |
| src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp | |
| roj12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c | |
| 389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5 | |
| fefjx2z/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuro | |
| n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgp | |
| i5cndfp4mhu3d5fefjx2z/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-bu | |
| ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17 | |
| 5_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/sundials/ | |
| ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459 | |
| /J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4 | |
| 055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack | |
| -src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git. | |
| 7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndf | |
| p4mhu3d5fefjx2z/spack-build-sghrr3b/src/nrniv/oc_generated -I/gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/s | |
| pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59 | |
| c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/iv | |
| os -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/ | |
| J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40 | |
| 55a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack- | |
| src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717 | |
| ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mh | |
| u3d5fefjx2z/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/ | |
| gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack- | |
| stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop- | |
| sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrnpython/../nrnoc | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J13 | |
| 22182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a | |
| 9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src | |
| /src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.77 | |
| 17ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4 | |
| mhu3d5fefjx2z/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/s | |
| pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev | |
| elop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/src/nrnpython/../n | |
| rnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174 | |
| 59/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd | |
| f4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spa | |
| ck-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024 | |
| -02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj | |
| 4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuro | |
| n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgp | |
| i5cndfp4mhu3d5fefjx2z/spack-src/external/eigen -march=skylake -mtu | |
| ne=skylake -fopenmp-simd -g -O1 -fp-model precise -std=c++17 -pth | |
| read -MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/modlreg.cpp.o -M | |
| F CMakeFiles/nrniv.dir/__/oc/modlreg.cpp.o.d -o CMakeFiles/nrniv.d | |
| ir/__/oc/modlreg.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb | |
| pcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.7 | |
| 717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp | |
| 4mhu3d5fefjx2z/spack-src/src/oc/modlreg.cpp | |
| 3712 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3713 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3714 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3715 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| ... | |
| 4586 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/c448d279dd3b91 | |
| 940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64/./libnrn | |
| mech.so" | |
| 4587 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe | |
| fjx2z/spack-build-sghrr3b MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4588 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn | |
| dfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/a9c54b18e4b54 | |
| 351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff' | |
| 4589 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| 4590 [ 55%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/DGC_UK.mod | |
| 4591 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/s | |
| pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev | |
| elop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/red | |
| uced_dentate//mechanisms/DGC_UK.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-ne | |
| uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2 | |
| hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/53c432 | |
| f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK. | |
| mod | |
| >> 4592 make[3]: xcrun: No such file or directory | |
| 4593 Default NMODL flags: | |
| >> 4594 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4595 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4596 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4597 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4598 [ 55%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod | |
| 4599 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/s | |
| pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev | |
| elop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/red | |
| uced_dentate//mechanisms/DGC_sAHP.mod /gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage- | |
| neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3 | |
| b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/53c4 | |
| 32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_s | |
| AHP.mod | |
| 4600 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe | |
| fjx2z/spack-build-sghrr3b MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4601 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 4602 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn | |
| dfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/c35d2f235e0f3 | |
| 860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7' | |
| 4603 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4604 make[3]: xcrun: No such file or directory | |
| 4605 Default NMODL flags: | |
| 4606 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.771 | |
| 7ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4m | |
| hu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/5b499c48b620b3f996 | |
| 279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/x86_64/./special" L | |
| DFLAGS are: | |
| >> 4607 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4608 [ 55%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/Gfluct3.mod | |
| 4609 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/s | |
| pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev | |
| elop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/red | |
| uced_dentate//mechanisms/Gfluct3.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ | |
| map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-n | |
| euron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b | |
| 2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/53c43 | |
| 2f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct | |
| 3.mod | |
| 4610 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4611 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4612 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4613 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.771 | |
| 7ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4m | |
| hu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/c448d279dd3b91940d | |
| 228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64/./special" L | |
| DFLAGS are: | |
| ... | |
| 4862 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext | |
| ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E | |
| cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi | |
| 5cndfp4mhu3d5fefjx2z/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron- | |
| git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5 | |
| cndfp4mhu3d5fefjx2z/spack-src/test/external/olfactory-bulb-3d /gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/ | |
| spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5 | |
| 9c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sgh | |
| rr3b /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/ | |
| J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40 | |
| 55a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack- | |
| build-sghrr3b/test/external/olfactory-bulb-3d /gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spac | |
| k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo | |
| p-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/extern | |
| al/olfactory-bulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4 | |
| e766bfda05bec75b2d552a2f4499313751329f0689cf9faab.dir/DependInfo.c | |
| make "--color=" | |
| 4863 "./holdingi.mod"[INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack | |
| -stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop | |
| -sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/share/corene | |
| uron/nrnivmodl_core_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neur | |
| on-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hg | |
| pi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b MODS_PATH=x86_64/corenr | |
| n/mod2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 4864 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx | |
| 2z/spack-build-sghrr3b/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/capmp.cpp | |
| 4865 "./hyperde3.mod" -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron- | |
| git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5 | |
| cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/263a5c542e0 | |
| 63ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/expsy | |
| nspine.cpp | |
| 4866 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn | |
| dfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/b62f97c7d3f6d | |
| 905c774d64e10128b3300792f8f757b926b965c058a4d6ee876' | |
| 4867 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4868 "./ichan2.mod"make[3]: xcrun: No such file or directory | |
| 4869 Default NMODL flags: | |
| 4870 "./iconc_Ca.mod"[ 57%] Generating ../../nrnivmodl/3a24bd33c51ee30 | |
| c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/CoreConfig.mod | |
| 4871 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/CoreConfig.mod /gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/ | |
| spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5 | |
| 9c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sgh | |
| rr3b/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d596 | |
| 3dc6fd47c3be88641a/CoreConfig.mod | |
| 4872 "./kcaPR.mod" -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/263a5c542e063e | |
| e6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/fh.cpp | |
| 4873 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b' | |
| 4874 make -f test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_nrniv | |
| modl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f0689cf9f | |
| aab.dir/build.make test/external/olfactory-bulb-3d/CMakeFiles/NRN_ | |
| TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f449931375132 | |
| 9f0689cf9faab.dir/build | |
| 4875 "./na3n.mod"make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sg | |
| hrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b' | |
| 4876 "./nca.mod"[NMODL] [warning] :: Can not inline function call to m | |
| ynormrand | |
| 4877 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4878 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4879 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| >> 4880 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4881 "./spines.mod" "./tca.mod" "./vecevent.mod" | |
| 4882 | |
| 4883 Creating 'x86_64' directory for .o files. | |
| 4884 | |
| 4885 [ 57%] Generating ../../nrnivmodl/14c92ceb412f1b4e766bfda05bec75b2 | |
| d552a2f4499313751329f0689cf9faab/ostimhelper.mod | |
| 4886 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/olfactory-bulb-3d && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/o | |
| lfactory-bulb-3d/sim/ostimhelper.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ | |
| map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-n | |
| euron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b | |
| 2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/14c92 | |
| ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/ostimh | |
| elper.mod | |
| 4887 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe | |
| fjx2z/spack-build-sghrr3b INCFLAGS=-I/usr/include LINKFLAGS=/usr/l | |
| ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC | |
| NRN_PRCELLSTATE=0 | |
| 4888 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn | |
| dfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/f7f437ac4f0ea | |
| 140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c' | |
| 4889 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| 4890 [ 57%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/Ih.mod | |
| 4891 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/Ih.mod /gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-bu | |
| ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17 | |
| 5_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/tes | |
| t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47 | |
| c3be88641a/Ih.mod | |
| >> 4892 make[3]: xcrun: No such file or directory | |
| 4893 Default NMODL flags: | |
| 4894 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4895 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4896 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| >> 4897 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4898 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 4899 [ 58%] Generating ../../nrnivmodl/14c92ceb412f1b4e766bfda05bec75b2 | |
| d552a2f4499313751329f0689cf9faab/Gfluct.mod | |
| 4900 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/olfactory-bulb-3d && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/o | |
| lfactory-bulb-3d/sim/Gfluct.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi | |
| 5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/14c92ceb41 | |
| 2f1b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/Gfluct.mod | |
| 4901 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4902 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4903 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| ... | |
| 5031 | |
| 5032 Creating 'x86_64' directory for .o files. | |
| 5033 | |
| 5034 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe | |
| fjx2z/spack-build-sghrr3b MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5035 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn | |
| dfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/53c432f7080fe | |
| 7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead' | |
| 5036 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5037 make[3]: xcrun: No such file or directory | |
| 5038 Default NMODL flags: | |
| 5039 x86_64/corenrn/mod2c/Gfluct3.cpp:485:9: warning: loop not vectoriz | |
| ed: the optimizer was unable to perform the requested transformati | |
| on; the transformation might be disabled or specified as part of a | |
| n unsupported transformation ordering [-Wpass-failed=transform-war | |
| ning] | |
| 5040 #pragma omp simd | |
| 5041 ^ | |
| 5042 x86_64/corenrn/mod2c/Gfluct3.cpp:584:9: warning: loop not vectoriz | |
| ed: the optimizer was unable to perform the requested transformati | |
| on; the transformation might be disabled or specified as part of a | |
| n unsupported transformation ordering [-Wpass-failed=transform-war | |
| ning] | |
| 5043 #pragma omp simd | |
| ... | |
| 5062 #pragma omp simd | |
| 5063 ^ | |
| 5064 4 warnings generated. | |
| 5065 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 5066 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 5067 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| >> 5068 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5069 x86_64/corenrn/mod2c/exp2syn.cpp:295:9: warning: loop not vectoriz | |
| ed: the optimizer was unable to perform the requested transformati | |
| on; the transformation might be disabled or specified as part of a | |
| n unsupported transformation ordering [-Wpass-failed=transform-war | |
| ning] | |
| 5070 #pragma omp simd | |
| 5071 ^ | |
| 5072 x86_64/corenrn/mod2c/exp2syn.cpp:329:13: warning: loop not vectori | |
| zed: the optimizer was unable to perform the requested transformat | |
| ion; the transformation might be disabled or specified as part of | |
| an unsupported transformation ordering [-Wpass-failed=transform-wa | |
| rning] | |
| 5073 #pragma omp simd | |
| 5074 ^ | |
| ... | |
| 5173 [ 59%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/kadist.mod | |
| 5174 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/kadist.mod /gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spac | |
| k-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72 | |
| ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b | |
| /test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6 | |
| fd47c3be88641a/kadist.mod | |
| 5175 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx | |
| 2z/spack-build-sghrr3b/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/ionleak.cpp | |
| 5176 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe | |
| fjx2z/spack-build-sghrr3b MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5177 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn | |
| dfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/14c92ceb412f1 | |
| b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab' | |
| 5178 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5179 make[3]: xcrun: No such file or directory | |
| 5180 Default NMODL flags: | |
| 5181 [ 59%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/kaprox.mod | |
| 5182 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/kaprox.mod /gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spac | |
| k-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72 | |
| ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-sghrr3b | |
| /test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6 | |
| fd47c3be88641a/kaprox.mod | |
| 5183 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx | |
| 2z/spack-build-sghrr3b/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/nacum.cpp | |
| >> 5184 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5185 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5186 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5187 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5188 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx | |
| 2z/spack-build-sghrr3b/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/nacur.cpp | |
| 5189 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5190 [NMODL] [warning] :: SYMTAB :: w [Argument] in NetReceiveBlock sha | |
| dows <assigned_definition> definition in NMODL_GLOBAL | |
| ... | |
| 5762 3 warnings generated. | |
| 5763 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.771 | |
| 7ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4m | |
| hu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/f7f437ac4f0ea140e8 | |
| 09f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/x86_64/./special" L | |
| DFLAGS are: /usr/lib64/libcrypto.so | |
| 5764 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx | |
| 2z/spack-build-sghrr3b/test/nrnivmodl/b62f97c7d3f6d905c774d64e1012 | |
| 8b3300792f8f757b926b965c058a4d6ee876/x86_64/nacum.cpp | |
| 5765 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fe | |
| fjx2z/spack-build-sghrr3b MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5766 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cn | |
| dfp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/3a24bd33c51ee | |
| 30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a' | |
| 5767 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5768 make[3]: xcrun: No such file or directory | |
| 5769 Default NMODL flags: | |
| >> 5770 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5771 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx | |
| 2z/spack-build-sghrr3b/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/tstextrn.cpp | |
| 5772 x86_64/corenrn/mod2c/gap.cpp:271:9: warning: loop not vectorized: | |
| the optimizer was unable to perform the requested transformation; | |
| the transformation might be disabled or specified as part of an un | |
| supported transformation ordering [-Wpass-failed=transform-warning | |
| ] | |
| 5773 #pragma omp simd | |
| 5774 ^ | |
| 5775 1 warning generated. | |
| 5776 x86_64/corenrn/mod2c/hh.cpp:361:13: warning: loop not vectorized: | |
| the optimizer was unable to perform the requested transformation; | |
| the transformation might be disabled or specified as part of an un | |
| supported transformation ordering [-Wpass-failed=transform-warning | |
| ] | |
| ... | |
| 7120 #pragma omp simd | |
| 7121 ^ | |
| 7122 3 warnings generated. | |
| 7123 [ 65%] Generating ../../external_ringtest_nrn/optim_node_order/rin | |
| g.py | |
| 7124 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sg | |
| hrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/ringtest// | |
| ring.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174 | |
| 59/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd | |
| f4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spa | |
| ck-build-sghrr3b/test/external_ringtest_nrn/optim_node_order/ring. | |
| py | |
| 7125 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.771 | |
| 7ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4m | |
| hu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/c35d2f235e0f3860fb | |
| ecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64/./special" L | |
| DFLAGS are: | |
| >> 7126 ampanmda.cpp:605:36: error: use of undeclared identifier '_globals | |
| ' | |
| 7127 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] ) ; | |
| 7128 ^ | |
| 7129 ampanmda.cpp:49:55: note: expanded from macro '_threadargscomma_' | |
| 7130 #define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _n | |
| t, | |
| 7131 ^ | |
| 7132 1 error generated. | |
| >> 7133 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 1 | |
| 7134 make[3]: *** Waiting for unfinished jobs.... | |
| 7135 [ 65%] Generating ../../external_ringtest/neuron/test_optimize_nod | |
| e_order.py | |
| 7136 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sg | |
| hrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/ringtest// | |
| test_optimize_node_order.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/test/external_ringtest/neuron | |
| /test_optimize_node_order.py | |
| 7137 [ 65%] Generating ../../external_ringtest/neuron_mpi/ringtest.py | |
| 7138 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sg | |
| hrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/ringtest// | |
| ringtest.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f351 | |
| 02ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z | |
| /spack-build-sghrr3b/test/external_ringtest/neuron_mpi/ringtest.py | |
| 7139 [ 65%] Generating ../../external_ringtest/neuron_mpi_python/ringte | |
| st.py | |
| 7140 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-bu | |
| ild-sghrr3b/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sg | |
| hrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-src/external/tests/ringtest// | |
| ringtest.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f351 | |
| 02ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z | |
| /spack-build-sghrr3b/test/external_ringtest/neuron_mpi_python/ring | |
| test.py | |
| 7141 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/14c92ceb412f1b | |
| 4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64' | |
| >> 7142 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_ | |
| nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068 | |
| 9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd | |
| a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2 | |
| 7143 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b' | |
| >> 7144 make[1]: *** [CMakeFiles/Makefile2:9702: test/external/olfactory-b | |
| ulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec7 | |
| 5b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2 | |
| 7145 make[1]: *** Waiting for unfinished jobs.... | |
| 7146 x86_64/corenrn/mod2c/Nap_Et2.cpp:306:13: warning: loop not vectori | |
| zed: the optimizer was unable to perform the requested transformat | |
| ion; the transformation might be disabled or specified as part of | |
| an unsupported transformation ordering [-Wpass-failed=transform-wa | |
| rning] | |
| 7147 #pragma omp simd | |
| 7148 ^ | |
| 7149 x86_64/corenrn/mod2c/Nap_Et2.cpp:376:9: warning: loop not vectoriz | |
| ed: the optimizer was unable to perform the requested transformati | |
| on; the transformation might be disabled or specified as part of a | |
| n unsupported transformation ordering [-Wpass-failed=transform-war | |
| ning] | |
| 7150 #pragma omp simd | |
| ... | |
| 7976 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.771 | |
| 7ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4m | |
| hu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/3a24bd33c51ee30c68 | |
| f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64/./special" L | |
| DFLAGS are: | |
| 7977 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b/test/nrnivmodl/3a24bd33c51ee3 | |
| 0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64' | |
| 7978 Successfully created x86_64/special | |
| 7979 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b' | |
| 7980 [ 66%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1 | |
| 46a37c165552933d5963dc6fd47c3be88641a | |
| 7981 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cnd | |
| fp4mhu3d5fefjx2z/spack-build-sghrr3b' | |
| >> 7982 make: *** [Makefile:169: all] Error 2 | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322182/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-sghrr3b2hgpi5cndfp4mhu3d5fefjx2z/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r1i5n12: task 0: Exited with exit code 1 | |
| section_end:1718651963:step_script [0Ksection_start:1718651963:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=59756 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1322182 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=59800 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1322182 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=59846 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1322182 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1718651965:upload_artifacts_on_failure [0Ksection_start:1718651965:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1718651966:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1718651189:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1718651189:resolve_secrets [0Ksection_start:1718651189:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3999708835, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 217459, build ref , job ID 1322184 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1322184_PROD_P2160_CP3_C13 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2255648 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322184_PROD_P2160_CP3_C13 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459 --ntasks=2 --jobid=2255648 --cpus-per-task=8 --mem=160G | |
| section_end:1718651192:prepare_executor [0Ksection_start:1718651192:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r3i5n34 via bbpv1.epfl.ch... | |
| section_end:1718651195:prepare_script [0Ksection_start:1718651195:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1718651196:get_sources [0Ksection_start:1718651196:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=22668 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1718651202:restore_cache [0Ksection_start:1718651202:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1322181)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=22799 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1322181 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1718651203:download_artifacts [0Ksection_start:1718651203:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459/J1322184_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255648/ccache | |
| Config file: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255648/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Mon Jun 17 21:07:00 2024 | |
| Local storage: | |
| Cache size (GB): 0.45 / 0.51 (88.54%) | |
| Files: 10450 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| Concretized | |
| -------------------------------- | |
| - 3fiddzu neuron@git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi | |
| ==> Installing neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-3fiddzutebdckptfvn5jemnuutcdhl3h [50/50] | |
| ==> No binary for neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-3fiddzutebdckptfvn5jemnuutcdhl3h found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 2: | |
| 'make' '-j8' | |
| 24 errors found in build log: | |
| 3033 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i | |
| voc/hocmark.cpp.o | |
| 3034 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322179/spack/lib/spack/env/nvhpc/nvc++ -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP | |
| ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS | |
| EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f351 | |
| 02ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h | |
| /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717b | |
| a3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jem | |
| nuutcdhl3h/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-ne | |
| uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzut | |
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| sd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spa | |
| ck-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_devel | |
| op-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrnoc -I/gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spac | |
| k-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72 | |
| ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/oc -I | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322 | |
| 184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99 | |
| 71c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build | |
| -3fiddzu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2 | |
| 17459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f3510 | |
| 2ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/ | |
| spack-build-3fiddzu/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neu | |
| ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzute | |
| bdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/src/nrnoc -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack- | |
| build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad | |
| 175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/s | |
| rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f | |
| 35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdh | |
| l3h/spack-build-3fiddzu/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuro | |
| n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebd | |
| ckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/src/parallel -I/gpfs/bbp | |
| .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack | |
| -build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72a | |
| d175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/ | |
| src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f | |
| 35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdh | |
| l3h/spack-build-3fiddzu/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spac | |
| k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo | |
| p-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/gnu -I/gpfs/ | |
| bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/sp | |
| ack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c | |
| 72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrn | |
| mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459 | |
| /J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4 | |
| 055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack | |
| -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp | |
| cproj12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba | |
| 3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemn | |
| uutcdhl3h/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neu | |
| ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzute | |
| bdckptfvn5jemnuutcdhl3h/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/s | |
| pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev | |
| elop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/sparse -I/gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/s | |
| pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59 | |
| c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/sp | |
| arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217 | |
| 459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102d | |
| df4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/sp | |
| ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717 | |
| ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5je | |
| mnuutcdhl3h/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/ | |
| gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack- | |
| stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop- | |
| 3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/sundials/ida -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/ | |
| spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5 | |
| 9c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/s | |
| undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc | |
| dhl3h/spack-build-3fiddzu/src/nrniv/oc_generated -I/gpfs/bbp.cscs. | |
| ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl | |
| ake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f | |
| iddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/ivos -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-buil | |
| d/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_ | |
| develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrnpython/. | |
| . -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J | |
| 1322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405 | |
| 5a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-s | |
| rc/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git.77 | |
| 17ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5 | |
| jemnuutcdhl3h/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/s | |
| pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev | |
| elop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrnpython/../i | |
| voc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459 | |
| /J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4 | |
| 055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack | |
| -src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-g | |
| it.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckp | |
| tfvn5jemnuutcdhl3h/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-b | |
| uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1 | |
| 75_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrnpytho | |
| n/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_extern | |
| als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python | |
| 3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl | |
| 3h/spack-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-poi | |
| nter --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,5 | |
| 41,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_ | |
| lib.dir/__/ivoc/hocmark.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivoc | |
| /hocmark.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp.o | |
| -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J | |
| 1322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405 | |
| 5a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-s | |
| rc/src/ivoc/hocmark.cpp | |
| 3035 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdc | |
| kptfvn5jemnuutcdhl3h/spack-build-3fiddzu/bin', compiling default o | |
| nes only! | |
| 3036 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc | |
| dhl3h/spack-build-3fiddzu MECHLIB_SUFFIX=internal NMODL_BINARY=/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software | |
| /install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d | |
| 46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod | |
| 2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 3037 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt | |
| fvn5jemnuutcdhl3h/spack-build-3fiddzu/bin' | |
| 3038 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 3039 make[3]: xcrun: No such file or directory | |
| 3040 Default NMODL flags: | |
| >> 3041 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 3042 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i | |
| voc/htlist.cpp.o | |
| 3043 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322179/spack/lib/spack/env/nvhpc/nvc++ -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP | |
| ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS | |
| EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f351 | |
| 02ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h | |
| /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717b | |
| a3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jem | |
| nuutcdhl3h/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-ne | |
| uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzut | |
| ebdckptfvn5jemnuutcdhl3h/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s | |
| sd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spa | |
| ck-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_devel | |
| op-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrnoc -I/gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spac | |
| k-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72 | |
| ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/oc -I | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322 | |
| 184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99 | |
| 71c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build | |
| -3fiddzu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2 | |
| 17459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f3510 | |
| 2ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/ | |
| spack-build-3fiddzu/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neu | |
| ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzute | |
| bdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/src/nrnoc -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack- | |
| build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad | |
| 175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/s | |
| rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f | |
| 35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdh | |
| l3h/spack-build-3fiddzu/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuro | |
| n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebd | |
| ckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/src/parallel -I/gpfs/bbp | |
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| develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrnpython/. | |
| . -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J | |
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| als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python | |
| 3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
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| 3h/spack-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-poi | |
| nter --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,5 | |
| 41,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_ | |
| lib.dir/__/ivoc/htlist.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivoc/ | |
| htlist.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o -c | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J132 | |
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| 971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/ | |
| src/ivoc/htlist.cpp | |
| 3044 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3045 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3046 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3047 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| ... | |
| 3818 | |
| 3819 Creating 'x86_64' directory for .o files. | |
| 3820 | |
| 3821 INFO:root:Extension common compile flags defaultdict(<class 'list' | |
| >, {'library_dirs': ['/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717b | |
| a3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jem | |
| nuutcdhl3h/spack-build-3fiddzu/lib'], 'libraries': ['nrniv'], 'lan | |
| guage': 'c++'}) | |
| 3822 INFO:root:RX3D is DISABLED | |
| 3823 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver | |
| sion_macros.o | |
| >> 3824 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta | |
| ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s | |
| ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu | |
| ptools.installer and fetch_build_eggs are deprecated. | |
| 3825 !! | |
| 3826 | |
| 3827 ********************************************************** | |
| ********************** | |
| 3828 Requirements should be satisfied by a PEP 517 installer. | |
| 3829 If you are using pip, you can try `pip install --use-pep51 | |
| 7`. | |
| 3830 ********************************************************** | |
| ********************** | |
| ... | |
| 3832 !! | |
| 3833 dist.fetch_build_eggs(dist.setup_requires) | |
| 3834 WARNING:root:WARNING: The wheel package is not available. | |
| 3835 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc | |
| dhl3h/spack-build-3fiddzu MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 3836 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt | |
| fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/c448d279dd3b9 | |
| 1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0' | |
| 3837 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 3838 make[3]: xcrun: No such file or directory | |
| 3839 Default NMODL flags: | |
| >> 3840 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 3841 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3842 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3843 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3844 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 3845 [ 42%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/oc | |
| kludge.cpp.o | |
| 3846 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322179/spack/lib/spack/env/nvhpc/nvc++ -DCOR | |
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| pcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717b | |
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| uutcdhl3h/spack-build-3fiddzu/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd | |
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| build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad | |
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| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/s | |
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| u -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J | |
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| 12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389 | |
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| se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/ | |
| J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf40 | |
| 55a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack- | |
| src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp | |
| roj12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c | |
| 389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuu | |
| tcdhl3h/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuro | |
| n-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebd | |
| ckptfvn5jemnuutcdhl3h/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-bu | |
| ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17 | |
| 5_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/sundials/ | |
| ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459 | |
| /J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4 | |
| 055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack | |
| -src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git. | |
| 7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfv | |
| n5jemnuutcdhl3h/spack-build-3fiddzu/src/nrniv/oc_generated -I/gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1 | |
| 2.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-buil | |
| d/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_ | |
| develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/ivos -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/ | |
| spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5 | |
| 9c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/n | |
| rnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl | |
| 3h/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neu | |
| ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzute | |
| bdckptfvn5jemnuutcdhl3h/spack-src/src/nrnpython/../nrnoc -I/gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spa | |
| ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7 | |
| 2ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrnp | |
| ython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389 | |
| f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcd | |
| hl3h/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitl | |
| ab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stag | |
| e-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fid | |
| dzutebdckptfvn5jemnuutcdhl3h/spack-src/src/nrnpython/../nrnmpi -I/ | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J13221 | |
| 84/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a997 | |
| 1c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/sr | |
| c/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st | |
| age_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/incl | |
| ude/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git.771 | |
| 7ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5j | |
| emnuutcdhl3h/spack-src/external/eigen -tp haswell -g -O1 -fno-omit | |
| -frame-pointer --c++17 --diag_suppress=1,47,111,128,170,174,177,1 | |
| 86,541,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nr | |
| niv.dir/__/oc/ockludge.cpp.o -MF CMakeFiles/nrniv.dir/__/oc/ocklud | |
| ge.cpp.o.d -o CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o -c /gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spa | |
| ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7 | |
| 2ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/src/oc/o | |
| ckludge.cpp | |
| ... | |
| 4533 [ 44%] Built target netcon_cpp | |
| 4534 make -f test/api/CMakeFiles/sections_c.dir/build.make test/api/CM | |
| akeFiles/sections_c.dir/depend | |
| 4535 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt | |
| fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/c35d2f235e0f3 | |
| 860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7' | |
| 4536 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| 4537 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt | |
| fvn5jemnuutcdhl3h/spack-build-3fiddzu' | |
| 4538 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext | |
| ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E | |
| cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdc | |
| kptfvn5jemnuutcdhl3h/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron- | |
| git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdck | |
| ptfvn5jemnuutcdhl3h/spack-src/test/api /gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage | |
| -neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fidd | |
| zutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu /gpfs/bbp.cscs.ch/ | |
| ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/sp | |
| ack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_deve | |
| lop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/test/api | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322 | |
| 184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99 | |
| 71c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build | |
| -3fiddzu/test/api/CMakeFiles/sections_c.dir/DependInfo.cmake "--co | |
| lor=" | |
| >> 4539 make[3]: xcrun: No such file or directory | |
| 4540 Default NMODL flags: | |
| >> 4541 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4542 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu' | |
| 4543 make -f test/api/CMakeFiles/sections_c.dir/build.make test/api/CM | |
| akeFiles/sections_c.dir/build | |
| 4544 [NMODL] [error] :: PROTECT statement is not supported with GPU exe | |
| cution | |
| 4545 [NMODL] [error] :: PROTECT statement is not supported with GPU exe | |
| cution | |
| 4546 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt | |
| fvn5jemnuutcdhl3h/spack-build-3fiddzu' | |
| 4547 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| ... | |
| 4700 Thread Safe | |
| 4701 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt | |
| fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/a9c54b18e4b54 | |
| 351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff' | |
| 4702 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| 4703 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl | |
| 3h/spack-build-3fiddzu/test/nrnivmodl/bbd7c82eee28b931214a8172bb77 | |
| 6ba66c406a6620c807381c850fedcdd74295/x86_64/halfgap.cpp | |
| 4704 [ 46%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/ichan2.mod | |
| 4705 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/s | |
| pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev | |
| elop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/red | |
| uced_dentate//mechanisms/ichan2.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-ne | |
| uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzut | |
| ebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/53c432 | |
| f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2. | |
| mod | |
| >> 4706 make[3]: xcrun: No such file or directory | |
| 4707 Default NMODL flags: | |
| >> 4708 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4709 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl | |
| 3h/spack-build-3fiddzu/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/fh.cpp | |
| 4710 [ 46%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33 | |
| 00792f8f757b926b965c058a4d6ee876/hhkin.mod | |
| 4711 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app | |
| s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake- | |
| 3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack | |
| -stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop | |
| -3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/testcor | |
| enrn//mod/hhkin.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3 | |
| c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnu | |
| utcdhl3h/spack-build-3fiddzu/test/nrnivmodl/b62f97c7d3f6d905c774d6 | |
| 4e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod | |
| 4712 [ 46%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod | |
| 4713 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/s | |
| pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev | |
| elop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/red | |
| uced_dentate//mechanisms/iconc_Ca.mod /gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage- | |
| neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddz | |
| utebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/53c4 | |
| 32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc | |
| _Ca.mod | |
| 4714 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| ... | |
| 4747 Mod files:make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage- | |
| neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddz | |
| utebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/c448 | |
| d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_6 | |
| 4' | |
| 4748 Successfully created x86_64/special | |
| 4749 "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_K | |
| DRf.mod"make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-ne | |
| uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzut | |
| ebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu' | |
| 4750 "./Aradi_KDRs.mod"[INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/s | |
| sd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spa | |
| ck-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_devel | |
| op-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/share/core | |
| neuron/nrnivmodl_core_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-ne | |
| uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzut | |
| ebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu MODS_PATH=x86_64/core | |
| nrn/mod2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 4751 "./Aradi_Na.mod" "./CaBK.mod"make[3]: Entering directory '/gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spa | |
| ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7 | |
| 2ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddz | |
| u/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b9 | |
| 65c058a4d6ee876' | |
| 4752 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4753 "./DGC_M.mod"make[3]: xcrun: No such file or directory | |
| 4754 [ 47%] Built target NRN_TEST_nrnivmodl_c448d279dd3b91940d228c42e4a | |
| 7c280bafe100b4e840f9c938be979cceb8fe0 | |
| 4755 make -f test/external/tqperf/CMakeFiles/NRN_TEST_nrnivmodl_f7f437 | |
| ac4f0ea140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c.dir/bui | |
| ld.make test/external/tqperf/CMakeFiles/NRN_TEST_nrnivmodl_f7f437a | |
| c4f0ea140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c.dir/depe | |
| nd | |
| 4756 Default NMODL flags: | |
| 4757 "./DGC_UK.mod"make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/ | |
| gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack- | |
| stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop- | |
| 3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu' | |
| 4758 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext | |
| ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E | |
| cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdc | |
| kptfvn5jemnuutcdhl3h/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron- | |
| git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdck | |
| ptfvn5jemnuutcdhl3h/spack-src/test/external/tqperf /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu /gpfs/ | |
| bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/sp | |
| ack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c | |
| 72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fidd | |
| zu/test/external/tqperf /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git.771 | |
| 7ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5j | |
| emnuutcdhl3h/spack-build-3fiddzu/test/external/tqperf/CMakeFiles/N | |
| RN_TEST_nrnivmodl_f7f437ac4f0ea140e809f1bdd7f7d03201e354b9a2041597 | |
| f8faaf7fb7aebb7c.dir/DependInfo.cmake "--color=" | |
| >> 4759 "./DGC_sAHP.mod" "./Gfluct3.mod"diff: x86_64/corenrn/mod2c/_mod_f | |
| unc.cpp: No such file or directory | |
| 4760 "./LcaMig.mod"[NMODL] [warning] :: Can not inline function call t | |
| o mynormrand | |
| 4761 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4762 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4763 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4764 "./SH_KIn.mod"make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/g | |
| itlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-s | |
| tage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3 | |
| fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu' | |
| 4765 make -f test/external/tqperf/CMakeFiles/NRN_TEST_nrnivmodl_f7f437 | |
| ac4f0ea140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c.dir/bui | |
| ld.make test/external/tqperf/CMakeFiles/NRN_TEST_nrnivmodl_f7f437a | |
| c4f0ea140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c.dir/buil | |
| d | |
| ... | |
| 4788 | |
| 4789 MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o | |
| 4790 MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o | |
| ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_s | |
| AHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./cc | |
| anl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./ic | |
| onc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent. | |
| o | |
| 4791 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc | |
| dhl3h/spack-build-3fiddzu INCFLAGS=-I/usr/include LINKFLAGS=/usr/l | |
| ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC | |
| NRN_PRCELLSTATE=0 | |
| 4792 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt | |
| fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/f7f437ac4f0ea | |
| 140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c' | |
| 4793 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4794 make[3]: xcrun: No such file or directory | |
| 4795 Default NMODL flags: | |
| >> 4796 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4797 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4798 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4799 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4800 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4801 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4802 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| ... | |
| 4804 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4805 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4806 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 4807 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc | |
| dhl3h/spack-build-3fiddzu MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4808 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt | |
| fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/53c432f7080fe | |
| 7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead' | |
| 4809 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4810 make[3]: xcrun: No such file or directory | |
| 4811 Default NMODL flags: | |
| >> 4812 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4813 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4814 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4815 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4816 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4817 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4818 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| ... | |
| 4981 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/kdrbca1.mod /gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spa | |
| ck-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c7 | |
| 2ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddz | |
| u/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc | |
| 6fd47c3be88641a/kdrbca1.mod | |
| 4982 [ 48%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/kdrca1.mod | |
| 4983 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/kdrca1.mod /gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spac | |
| k-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72 | |
| ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu | |
| /test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6 | |
| fd47c3be88641a/kdrca1.mod | |
| 4984 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc | |
| dhl3h/spack-build-3fiddzu MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4985 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt | |
| fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/14c92ceb412f1 | |
| b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab' | |
| 4986 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4987 make[3]: xcrun: No such file or directory | |
| 4988 Default NMODL flags: | |
| >> 4989 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4990 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 4991 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 4992 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 4993 [ 48%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/km.mod | |
| 4994 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/km.mod /gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-bu | |
| ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17 | |
| 5_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-3fiddzu/tes | |
| t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47 | |
| c3be88641a/km.mod | |
| 4995 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| ... | |
| 5039 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/a9c54b18e4b543 | |
| 51cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./libnrn | |
| mech.so" | |
| 5040 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git.771 | |
| 7ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5j | |
| emnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/a9c54b18e4b54351cb | |
| 4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./special" L | |
| DFLAGS are: | |
| 5041 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322 | |
| 184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99 | |
| 71c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build | |
| -3fiddzu/share/nrn/nrnmain.cpp: | |
| 5042 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutc | |
| dhl3h/spack-build-3fiddzu MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5043 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckpt | |
| fvn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/3a24bd33c51ee | |
| 30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a' | |
| 5044 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5045 make[3]: xcrun: No such file or directory | |
| 5046 Default NMODL flags: | |
| >> 5047 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5048 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion | |
| > definition in NMODL_GLOBAL | |
| 5049 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion | |
| > definition in NMODL_GLOBAL | |
| 5050 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion | |
| > definition in NMODL_GLOBAL | |
| 5051 => Binary creating x86_64/special-core | |
| 5052 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 5053 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| ... | |
| 6152 [ 53%] Generating ../../external_ringtest_nrn/optim_node_order/set | |
| tings.py | |
| 6153 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f | |
| iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest// | |
| settings.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f351 | |
| 02ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h | |
| /spack-build-3fiddzu/test/external_ringtest_nrn/optim_node_order/s | |
| ettings.py | |
| 6154 [ 53%] Generating ../../external_ringtest_nrn/optim_node_order/tes | |
| t_optimize_node_order.py | |
| 6155 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f | |
| iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest// | |
| test_optimize_node_order.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu/test/external_ringtest_nrn/op | |
| tim_node_order/test_optimize_node_order.py | |
| 6156 [ 53%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli | |
| ne_saverestore/settings.py | |
| 6157 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f | |
| iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest// | |
| settings.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f351 | |
| 02ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h | |
| /spack-build-3fiddzu/test/external_ringtest/coreneuron_cpu_mpi_off | |
| line_saverestore/settings.py | |
| >> 6158 "ampanmda.cpp", line 605: error: identifier "_globals" is undefine | |
| d | |
| 6159 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] ) | |
| ; | |
| 6160 ^ | |
| 6161 | |
| 6162 1 error detected in the compilation of "ampanmda.cpp". | |
| >> 6163 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 2 | |
| 6164 make[3]: *** Waiting for unfinished jobs.... | |
| 6165 [ 53%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli | |
| ne_saverestore/test_optimize_node_order.py | |
| 6166 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f | |
| iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest// | |
| test_optimize_node_order.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu/test/external_ringtest/corene | |
| uron_cpu_mpi_offline_saverestore/test_optimize_node_order.py | |
| 6167 [ 54%] Generating ../../external_ringtest_nrn/optim_node_order/cel | |
| l.hoc | |
| 6168 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f | |
| iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest// | |
| cell.hoc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217 | |
| 459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102d | |
| df4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/sp | |
| ack-build-3fiddzu/test/external_ringtest_nrn/optim_node_order/cell | |
| .hoc | |
| 6169 [ 54%] Generating ../../external_ringtest_nrn/optim_node_order/cel | |
| luniform.hoc | |
| ... | |
| 6196 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f | |
| iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest// | |
| commonutils.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f | |
| 35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdh | |
| l3h/spack-build-3fiddzu/test/external_ringtest/coreneuron_cpu_mpi/ | |
| commonutils.py | |
| 6197 [ 55%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli | |
| ne/commonutils.py | |
| 6198 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f | |
| iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest// | |
| commonutils.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f | |
| 35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdh | |
| l3h/spack-build-3fiddzu/test/external_ringtest/coreneuron_cpu_mpi_ | |
| offline/commonutils.py | |
| 6199 [ 55%] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranpa | |
| rm.py | |
| 6200 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f | |
| iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest// | |
| ranparm.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2 | |
| 17459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f3510 | |
| 2ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/ | |
| spack-build-3fiddzu/test/external_ringtest/coreneuron_cpu_mpi/ranp | |
| arm.py | |
| 6201 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/14c92ceb412f1b | |
| 4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64' | |
| >> 6202 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_ | |
| nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068 | |
| 9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd | |
| a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2 | |
| 6203 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu' | |
| >> 6204 make[1]: *** [CMakeFiles/Makefile2:11803: test/external/olfactory- | |
| bulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec | |
| 75b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2 | |
| 6205 make[1]: *** Waiting for unfinished jobs.... | |
| 6206 [ 55%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli | |
| ne/ranparm.py | |
| 6207 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f | |
| iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest// | |
| ranparm.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2 | |
| 17459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f3510 | |
| 2ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/ | |
| spack-build-3fiddzu/test/external_ringtest/coreneuron_cpu_mpi_offl | |
| ine/ranparm.py | |
| 6208 [ 55%] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring. | |
| py | |
| 6209 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-bu | |
| ild-3fiddzu/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3f | |
| iddzutebdckptfvn5jemnuutcdhl3h/spack-src/external/tests/ringtest// | |
| ring.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174 | |
| 59/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102dd | |
| f4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spa | |
| ck-build-3fiddzu/test/external_ringtest/coreneuron_cpu_mpi/ring.py | |
| 6210 [ 55%] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringt | |
| est.py | |
| ... | |
| 6634 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio | |
| ur is deprecated and will be removed in a future version of the li | |
| nker | |
| 6635 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu/test/nrnivmodl/3a24bd33c51ee3 | |
| 0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64' | |
| 6636 Successfully created x86_64/special | |
| 6637 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu' | |
| 6638 [ 55%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1 | |
| 46a37c165552933d5963dc6fd47c3be88641a | |
| 6639 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptf | |
| vn5jemnuutcdhl3h/spack-build-3fiddzu' | |
| >> 6640 make: *** [Makefile:169: all] Error 2 | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322184/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-3fiddzutebdckptfvn5jemnuutcdhl3h/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r3i5n34: task 0: Exited with exit code 1 | |
| section_end:1718653138:step_script [0Ksection_start:1718653138:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=59193 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1322184 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=59236 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1322184 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=59278 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1322184 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1718653143:upload_artifacts_on_failure [0Ksection_start:1718653143:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1718653149:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1718651192:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1718651192:resolve_secrets [0Ksection_start:1718651192:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor687081079, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 217459, build ref , job ID 1322186 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1322186_PROD_P2160_CP5_C17 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2255652 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322186_PROD_P2160_CP5_C17 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459 --ntasks=2 --jobid=2255652 --cpus-per-task=8 --mem=160G | |
| section_end:1718651195:prepare_executor [0Ksection_start:1718651195:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r4i2n17 via bbpv1.epfl.ch... | |
| section_end:1718651199:prepare_script [0Ksection_start:1718651199:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1718651200:get_sources [0Ksection_start:1718651200:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=114553 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1718651206:restore_cache [0Ksection_start:1718651206:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1322181)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=116651 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1322181 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1718651207:download_artifacts [0Ksection_start:1718651207:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459/J1322186_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255652/ccache | |
| Config file: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255652/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Mon Jun 17 21:07:01 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (90.55%) | |
| Files: 10962 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| - ^caliper+cuda cuda_arch=70 | |
| Concretized | |
| -------------------------------- | |
| - nbrt2mt neuron@git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| - vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake | |
| [^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake | |
| [^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp | |
| ==> Installing neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-nbrt2mtvkibls5g6wll3eufcv5damkqi [55/55] | |
| ==> No binary for neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-nbrt2mtvkibls5g6wll3eufcv5damkqi found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 2: | |
| 'make' '-j8' | |
| 24 errors found in build log: | |
| 2878 [ 29%] Running nrnivmodl-core with internal mod files | |
| 2879 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu | |
| ild-nbrt2mt/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage | |
| _externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak | |
| e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3 | |
| c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufc | |
| v5damkqi/spack-build-nbrt2mt/bin/nrnivmodl-core -b STATIC -m /gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/i | |
| nstall_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46 | |
| 770aa12665_develop-53hy2e/bin/nmodl -n internal -p 4 . | |
| 2880 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibl | |
| s5g6wll3eufcv5damkqi/spack-build-nbrt2mt/bin', compiling default o | |
| nes only! | |
| 2881 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d | |
| amkqi/spack-build-nbrt2mt MECHLIB_SUFFIX=internal NMODL_BINARY=/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software | |
| /install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d | |
| 46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod | |
| 2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 2882 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g | |
| 6wll3eufcv5damkqi/spack-build-nbrt2mt/bin' | |
| 2883 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 2884 make[3]: xcrun: No such file or directory | |
| 2885 Default NMODL flags: | |
| >> 2886 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 2887 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2888 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2889 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2890 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 2891 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM | |
| ath.h", line 984: warning: integer conversion resulted in a change | |
| of sign [integer_sign_change] | |
| 2892 const __m128i sign_mask = _mm_set1_epi16(static_cast<numext::u | |
| int16_t>(0x8000)); | |
| ... | |
| 3821 Creating 'x86_64' directory for .o files. | |
| 3822 | |
| 3823 INFO:root:setup.py called with:setup.py build --cmake-build-dir /g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J132218 | |
| 6/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971 | |
| c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-n | |
| brt2mt --disable-rx3d --without-nrnpython --build-lib=/gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-bu | |
| ild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad17 | |
| 5_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/lib | |
| /python build_ext --define=USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_B | |
| UILD=0 | |
| 3824 INFO:root:Extension common compile flags defaultdict(<class 'list' | |
| >, {'library_dirs': ['/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717b | |
| a3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eu | |
| fcv5damkqi/spack-build-nbrt2mt/lib'], 'libraries': ['nrniv'], 'lan | |
| guage': 'c++'}) | |
| 3825 INFO:root:RX3D is DISABLED | |
| 3826 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver | |
| sion_macros.o | |
| >> 3827 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta | |
| ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s | |
| ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu | |
| ptools.installer and fetch_build_eggs are deprecated. | |
| 3828 !! | |
| 3829 | |
| 3830 ********************************************************** | |
| ********************** | |
| 3831 Requirements should be satisfied by a PEP 517 installer. | |
| 3832 If you are using pip, you can try `pip install --use-pep51 | |
| 7`. | |
| 3833 ********************************************************** | |
| ********************** | |
| ... | |
| 3835 !! | |
| 3836 dist.fetch_build_eggs(dist.setup_requires) | |
| 3837 WARNING:root:WARNING: The wheel package is not available. | |
| 3838 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d | |
| amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 3839 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g | |
| 6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/c448d279dd3b9 | |
| 1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0' | |
| 3840 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 3841 make[3]: xcrun: No such file or directory | |
| 3842 Default NMODL flags: | |
| >> 3843 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 3844 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3845 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3846 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3847 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 3848 [ 42%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/oc | |
| kludge.cpp.o | |
| 3849 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu | |
| ild-nbrt2mt/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322179/spack/lib/spack/env/nvhpc/nvc++ -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS | |
| -DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-buil | |
| d/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_ | |
| develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/ivoc -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/ | |
| spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5 | |
| 9c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/n | |
| rncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102 | |
| ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/s | |
| pack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp | |
| cproj12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba | |
| 3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3euf | |
| cv5damkqi/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibl | |
| s5g6wll3eufcv5damkqi/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitl | |
| ab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-stag | |
| e-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt | |
| 2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/src/nr | |
| ncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217 | |
| 459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102d | |
| df4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/sp | |
| ack-build-nbrt2mt/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-g | |
| it.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5 | |
| g6wll3eufcv5damkqi/spack-build-nbrt2mt/src/nrnpython -I/gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-b | |
| uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1 | |
| 75_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/sr | |
| c/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21745 | |
| 9/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf | |
| 4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spac | |
| k-build-nbrt2mt/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron- | |
| git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls | |
| 5g6wll3eufcv5damkqi/spack-build-nbrt2mt/src/sundials -I/gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-b | |
| uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1 | |
| 75_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/sr | |
| c/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3 | |
| c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufc | |
| v5damkqi/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git.77 | |
| 17ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll | |
| 3eufcv5damkqi/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neur | |
| on-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvki | |
| bls5g6wll3eufcv5damkqi/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spac | |
| k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo | |
| p-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/nrnpython -I/gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/s | |
| pack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59 | |
| c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/pa | |
| rallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217 | |
| 459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102d | |
| df4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/sp | |
| ack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717 | |
| ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3e | |
| ufcv5damkqi/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neu | |
| ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvk | |
| ibls5g6wll3eufcv5damkqi/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/s | |
| pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev | |
| elop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/sundials -I/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186 | |
| /spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c | |
| 59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/ | |
| sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr | |
| oj12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c3 | |
| 89f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5 | |
| damkqi/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-ne | |
| uron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtv | |
| kibls5g6wll3eufcv5damkqi/spack-src/src/sundials/shared -I/gpfs/bbp | |
| .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack | |
| -build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72a | |
| d175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/ | |
| src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01 | |
| /stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6 | |
| rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389 | |
| f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5da | |
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| l3eufcv5damkqi/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/ | |
| gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spack- | |
| stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop- | |
| nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/nrnpython/../oc -I/ | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J13221 | |
| 86/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a997 | |
| 1c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/sr | |
| c/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717 | |
| ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3e | |
| ufcv5damkqi/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spac | |
| k-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develo | |
| p-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/src/nrnpython/../nrni | |
| v -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J | |
| 1322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405 | |
| 5a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-s | |
| rc/src/nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g | |
| 6wll3eufcv5damkqi/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs | |
| .ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-sky | |
| lake/python-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_ | |
| gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spac | |
| k-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72 | |
| ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/ | |
| eigen -tp haswell -g -O1 -fno-omit-frame-pointer --c++17 --diag_s | |
| uppress=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherr | |
| or -MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o -MF | |
| CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o.d -o CMakeFiles/nrniv.d | |
| ir/__/oc/ockludge.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git. | |
| 7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6w | |
| ll3eufcv5damkqi/spack-src/src/oc/ockludge.cpp | |
| ... | |
| 4524 [ 44%] Linking CXX executable ../../bin/test/netcon_cpp | |
| 4525 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu | |
| ild-nbrt2mt/test/api && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/ | |
| stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin | |
| /cmake -E cmake_link_script CMakeFiles/netcon_cpp.dir/link.txt --v | |
| erbose=1 | |
| 4526 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322 | |
| 179/spack/lib/spack/env/nvhpc/nvc++ -tp haswell -g -O1 -fno-omit-f | |
| rame-pointer -noswitcherror -rdynamic CMakeFiles/netcon_cpp.dir/n | |
| etcon.cpp.o -o ../../bin/test/netcon_cpp -L/gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hp | |
| e-mpi-2.27.p1.hmpt-6rr256/lib -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb | |
| rt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/lib:/gpfs/bbp.c | |
| scs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0- | |
| skylake/python-3.11.6-bj4i6m/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/20 | |
| 24-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8. | |
| 2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_appli | |
| cations/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib:/gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/inst | |
| all_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64:/gpfs/bbp.cscs. | |
| ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-s | |
| kylake/adiak-0.4.0-hficqq/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.h | |
| mpt-6rr256/lib -ldl ../../lib/libnrniv.so ../../lib/libnrngnu.a .. | |
| /../lib/libsparse13.a /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st | |
| age_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/lib/ | |
| libpython3.11.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_a | |
| pplications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7/lib/lib | |
| readline.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applic | |
| ations/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libcurses | |
| .so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/i | |
| nstall_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libform.so /gpfs/ | |
| bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/in | |
| stall_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64/libcaliper.so | |
| .2.11.0 -lpthread -lpthread -ldl -lmpi -Wl,-rpath-link,/gpfs/bbp.c | |
| scs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3 | |
| .0-skylake/adiak-0.4.0-hficqq/lib | |
| 4527 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d | |
| amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4528 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g | |
| 6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/c35d2f235e0f3 | |
| 860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7' | |
| 4529 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4530 make[3]: xcrun: No such file or directory | |
| 4531 Default NMODL flags: | |
| >> 4532 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4533 [NMODL] [error] :: PROTECT statement is not supported with GPU exe | |
| cution | |
| 4534 [NMODL] [error] :: PROTECT statement is not supported with GPU exe | |
| cution | |
| 4535 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk | |
| qi/spack-build-nbrt2mt/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/cacur.cpp | |
| 4536 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4537 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4538 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| ... | |
| 4682 MODOBJS= ./halfgap.o | |
| 4683 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322 | |
| 186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a99 | |
| 71c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build | |
| -nbrt2mt/share/nrn/nrnmain.cpp: | |
| 4684 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d | |
| amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4685 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk | |
| qi/spack-build-nbrt2mt/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/cagkftab.cpp | |
| 4686 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g | |
| 6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/a9c54b18e4b54 | |
| 351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff' | |
| 4687 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4688 make[3]: xcrun: No such file or directory | |
| 4689 Default NMODL flags: | |
| >> 4690 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4691 MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o | |
| ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_s | |
| AHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./cc | |
| anl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./ic | |
| onc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent. | |
| o | |
| 4692 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4693 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4694 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4695 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 4696 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk | |
| qi/spack-build-nbrt2mt/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/capmp.cpp | |
| ... | |
| 4724 Translating halfgap.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g | |
| 6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/bbd7c82eee28b | |
| 931214a8172bb776ba66c406a6620c807381c850fedcdd74295/x86_64/halfgap | |
| .cpp | |
| 4725 Thread Safe | |
| 4726 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk | |
| qi/spack-build-nbrt2mt/test/nrnivmodl/bbd7c82eee28b931214a8172bb77 | |
| 6ba66c406a6620c807381c850fedcdd74295/x86_64/halfgap.cpp | |
| 4727 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d | |
| amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4728 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g | |
| 6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/53c432f7080fe | |
| 7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead' | |
| 4729 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4730 make[3]: xcrun: No such file or directory | |
| 4731 Default NMODL flags: | |
| >> 4732 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4733 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4734 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4735 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4736 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4737 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4738 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| ... | |
| 4813 [ 47%] Linking CXX executable ../bin/test/testneuron | |
| 4814 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu | |
| ild-nbrt2mt/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E cmake_link_script CMakeFiles/testneuron.dir/link.txt --verbo | |
| se=1 | |
| 4815 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322 | |
| 179/spack/lib/spack/env/nvhpc/nvc++ -tp haswell -g -O1 -fno-omit-f | |
| rame-pointer -noswitcherror CMakeFiles/testneuron.dir/common/catc | |
| h2_main.cpp.o CMakeFiles/testneuron.dir/unit_tests/basic.cpp.o CMa | |
| keFiles/testneuron.dir/unit_tests/iovec.cpp.o CMakeFiles/testneuro | |
| n.dir/unit_tests/container/container.cpp.o CMakeFiles/testneuron.d | |
| ir/unit_tests/container/generic_data_handle.cpp.o CMakeFiles/testn | |
| euron.dir/unit_tests/container/mechanism.cpp.o CMakeFiles/testneur | |
| on.dir/unit_tests/container/node.cpp.o CMakeFiles/testneuron.dir/u | |
| nit_tests/node_order_optim/permutations.cpp.o CMakeFiles/testneuro | |
| n.dir/unit_tests/utils/enumerate.cpp.o CMakeFiles/testneuron.dir/u | |
| nit_tests/oc/hoc_interpreter.cpp.o CMakeFiles/testneuron.dir/cover | |
| /unit_tests/cover.cpp.o -o ../bin/test/testneuron -L/gpfs/bbp.cs | |
| cs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-s | |
| kylake/hpe-mpi-2.27.p1.hmpt-6rr256/lib -Wl,-rpath,/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-nbrt2mt/lib:/g | |
| pfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc | |
| c-12.3.0-skylake/python-3.11.6-bj4i6m/lib:/gpfs/bbp.cscs.ch/ssd/ap | |
| ps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/re | |
| adline-8.2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st | |
| age_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib | |
| :/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/soft | |
| ware/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64:/gpfs/ | |
| bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc | |
| -12.3.0-skylake/adiak-0.4.0-hficqq/lib:/gpfs/bbp.cscs.ch/ssd/apps/ | |
| bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi- | |
| 2.27.p1.hmpt-6rr256/lib ../lib/libCatch2.a ../lib/libnrniv.so -ldl | |
| ../lib/libnrngnu.a ../lib/libsparse13.a /gpfs/bbp.cscs.ch/ssd/app | |
| s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python | |
| -3.11.6-bj4i6m/lib/libpython3.11.so /gpfs/bbp.cscs.ch/ssd/apps/bsd | |
| /2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline | |
| -8.2-pdugg7/lib/libreadline.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024 | |
| -02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6 | |
| kdbhv/lib/libcurses.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/s | |
| tage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/li | |
| b/libform.so /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/ | |
| P217459/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/ | |
| lib64/libcaliper.so.2.11.0 -lpthread -lpthread -ldl -lmpi -Wl,-rpa | |
| th-link,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applicatio | |
| ns/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq/lib | |
| 4816 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d | |
| amkqi/spack-build-nbrt2mt INCFLAGS=-I/usr/include LINKFLAGS=/usr/l | |
| ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC | |
| NRN_PRCELLSTATE=0 | |
| 4817 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g | |
| 6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/f7f437ac4f0ea | |
| 140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c' | |
| 4818 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4819 make[3]: xcrun: No such file or directory | |
| 4820 Default NMODL flags: | |
| >> 4821 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4822 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d | |
| amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4823 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4824 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4825 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4826 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4827 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4828 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4829 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g | |
| 6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/b62f97c7d3f6d | |
| 905c774d64e10128b3300792f8f757b926b965c058a4d6ee876' | |
| 4830 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| 4831 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4832 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4833 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| >> 4834 make[3]: xcrun: No such file or directory | |
| 4835 Default NMODL flags: | |
| 4836 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 4837 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt' | |
| >> 4838 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4839 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4840 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4841 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4842 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4843 [ 47%] Built target testneuron | |
| 4844 make -f test/external/channel-benchmark/CMakeFiles/NRN_TEST_nrniv | |
| modl_3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47c3be886 | |
| 41a.dir/build.make test/external/channel-benchmark/CMakeFiles/NRN_ | |
| TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6f | |
| d47c3be88641a.dir/depend | |
| ... | |
| 5003 | |
| 5004 MODOBJS= ./Gfluct.o ./ThreshDetect.o ./ampanmda.o ./distrt.o ./fi. | |
| o ./fi_stdp.o ./gap.o ./kamt.o ./kdrmt.o ./ks.o ./naxn.o ./orn.o . | |
| /ostimhelper.o | |
| 5005 MODOBJS= ./Ca.o ./CaDynamics_DC0.o ./CaDynamics_E2.o ./Ca_HVA.o ./ | |
| Ca_HVA2.o ./Ca_LVAst.o ./CoreConfig.o ./Ih.o ./Im.o ./K_Pst.o ./K_ | |
| Tst.o ./KdShu2007.o ./NaTa_t.o ./NaTg.o ./NaTs2_t.o ./Nap_Et2.o ./ | |
| ProbAMPANMDA_EMS.o ./ProbGABAAB_EMS.o ./ProfileHelper.o ./SK_E2.o | |
| ./SKv3_1.o ./TTXDynamicsSwitch.o ./VecStim.o ./cacumm.o ./cacummb. | |
| o ./cagk.o ./cal2.o ./can2.o ./cat.o ./gap.o ./h.o ./halfgap.o ./k | |
| adist.o ./kaprox.o ./kca.o ./kd.o ./kd2.o ./kdb.o ./kdrbca1.o ./kd | |
| rca1.o ./km.o ./kmb.o ./na3n.o ./naxn.o ./netstim_inhpoisson.o ./n | |
| ew_calcium_channels.o | |
| 5006 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d | |
| amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5007 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g | |
| 6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/14c92ceb412f1 | |
| b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab' | |
| 5008 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5009 make[3]: xcrun: No such file or directory | |
| 5010 Default NMODL flags: | |
| 5011 => Binary creating x86_64/special-core | |
| >> 5012 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5013 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5014 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5015 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5016 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk | |
| qi/spack-build-nbrt2mt/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/inatest.cpp | |
| 5017 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5018 [NMODL] [warning] :: SYMTAB :: w [Argument] in NetReceiveBlock sha | |
| dows <assigned_definition> definition in NMODL_GLOBAL | |
| ... | |
| 5028 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk | |
| qi/spack-build-nbrt2mt/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/ionleak.cpp | |
| 5029 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk | |
| qi/spack-build-nbrt2mt/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/nacum.cpp | |
| 5030 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk | |
| qi/spack-build-nbrt2mt/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/nacur.cpp | |
| 5031 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5d | |
| amkqi/spack-build-nbrt2mt MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5032 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g | |
| 6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/3a24bd33c51ee | |
| 30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a' | |
| 5033 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5034 make[3]: xcrun: No such file or directory | |
| 5035 Default NMODL flags: | |
| >> 5036 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5037 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion | |
| > definition in NMODL_GLOBAL | |
| 5038 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion | |
| > definition in NMODL_GLOBAL | |
| 5039 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion | |
| > definition in NMODL_GLOBAL | |
| 5040 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 5041 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 5042 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| ... | |
| 6191 -> NMODL .././SH_na8st.mod | |
| 6192 -> NMODL .././bgka.mod | |
| 6193 [ 53%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli | |
| ne_saverestore/ringuniform.py | |
| 6194 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu | |
| ild-nbrt2mt/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb | |
| rt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/ringtest// | |
| ringuniform.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f | |
| 35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5dam | |
| kqi/spack-build-nbrt2mt/test/external_ringtest/coreneuron_cpu_mpi_ | |
| offline_saverestore/ringuniform.py | |
| 6195 [ 53%] Generating ../../external_ringtest/neuron_mpi_python/cellun | |
| iform.hoc | |
| 6196 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu | |
| ild-nbrt2mt/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb | |
| rt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/ringtest// | |
| celluniform.hoc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389 | |
| f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5da | |
| mkqi/spack-build-nbrt2mt/test/external_ringtest/neuron_mpi_python/ | |
| celluniform.hoc | |
| >> 6197 "ampanmda.cpp", line 605: error: identifier "_globals" is undefine | |
| d | |
| 6198 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] ) | |
| ; | |
| 6199 ^ | |
| 6200 | |
| 6201 1 error detected in the compilation of "ampanmda.cpp". | |
| >> 6202 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 2 | |
| 6203 make[3]: *** Waiting for unfinished jobs.... | |
| 6204 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt' | |
| 6205 Translating LcaMig.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/53c432f7080fe7 | |
| b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/x86_64/LcaMig.c | |
| pp | |
| 6206 Thread Safe | |
| 6207 [ 53%] Generating ../../external_ringtest_nrn/optim_node_order/set | |
| tings.py | |
| 6208 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu | |
| ild-nbrt2mt/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb | |
| rt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/ringtest// | |
| settings.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f351 | |
| 02ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi | |
| /spack-build-nbrt2mt/test/external_ringtest_nrn/optim_node_order/s | |
| ettings.py | |
| ... | |
| 6277 Thread Safe | |
| 6278 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damk | |
| qi/spack-build-nbrt2mt/test/nrnivmodl/53c432f7080fe7b786e16536f2d1 | |
| 7f96d387425d200c645a6b4cec93b5edfead/x86_64/Aradi_KA.cpp | |
| 6279 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt' | |
| 6280 [ 55%] Generating ../../external_ringtest/coreneuron_cpu_mpi_offli | |
| ne_saverestore/celluniform.hoc | |
| 6281 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu | |
| ild-nbrt2mt/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb | |
| rt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/ringtest// | |
| celluniform.hoc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389 | |
| f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5da | |
| mkqi/spack-build-nbrt2mt/test/external_ringtest/coreneuron_cpu_mpi | |
| _offline_saverestore/celluniform.hoc | |
| 6282 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/14c92ceb412f1b | |
| 4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64' | |
| >> 6283 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_ | |
| nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068 | |
| 9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd | |
| a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2 | |
| 6284 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt' | |
| >> 6285 make[1]: *** [CMakeFiles/Makefile2:11803: test/external/olfactory- | |
| bulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec | |
| 75b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2 | |
| 6286 make[1]: *** Waiting for unfinished jobs.... | |
| 6287 [ 55%] Built target copy-scripts-external_ringtest_nrn-optim_node_ | |
| order | |
| 6288 [ 55%] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranpa | |
| rm.py | |
| 6289 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-bu | |
| ild-nbrt2mt/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nb | |
| rt2mtvkibls5g6wll3eufcv5damkqi/spack-src/external/tests/ringtest// | |
| ranparm.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2 | |
| 17459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f3510 | |
| 2ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/ | |
| spack-build-nbrt2mt/test/external_ringtest/coreneuron_cpu_mpi/ranp | |
| arm.py | |
| 6290 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt' | |
| 6291 Translating vecevent.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-g | |
| it.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5 | |
| g6wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/53c432f7080f | |
| e7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/x86_64/veceve | |
| nt.cpp | |
| ... | |
| 6609 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio | |
| ur is deprecated and will be removed in a future version of the li | |
| nker | |
| 6610 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt/test/nrnivmodl/3a24bd33c51ee3 | |
| 0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64' | |
| 6611 Successfully created x86_64/special | |
| 6612 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt' | |
| 6613 [ 55%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1 | |
| 46a37c165552933d5963dc6fd47c3be88641a | |
| 6614 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6 | |
| wll3eufcv5damkqi/spack-build-nbrt2mt' | |
| >> 6615 make: *** [Makefile:169: all] Error 2 | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322186/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-nbrt2mtvkibls5g6wll3eufcv5damkqi/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r4i2n17: task 0: Exited with exit code 1 | |
| section_end:1718652809:step_script [0Ksection_start:1718652809:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=144915 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1322186 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=144955 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1322186 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=144997 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1322186 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1718652811:upload_artifacts_on_failure [0Ksection_start:1718652811:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1718652812:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1718651193:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1718651193:resolve_secrets [0Ksection_start:1718651193:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1603410644, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 217459, build ref , job ID 1322187 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1322187_PROD_P2160_CP6_C19 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2255654 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322187_PROD_P2160_CP6_C19 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459 --ntasks=2 --jobid=2255654 --cpus-per-task=8 --mem=160G | |
| section_end:1718651195:prepare_executor [0Ksection_start:1718651195:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r4i6n18 via bbpv1.epfl.ch... | |
| section_end:1718651198:prepare_script [0Ksection_start:1718651198:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1718651199:get_sources [0Ksection_start:1718651199:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=106616 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1718651205:restore_cache [0Ksection_start:1718651205:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1322181)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=106713 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1322181 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1718651207:download_artifacts [0Ksection_start:1718651207:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459/J1322187_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255654/ccache | |
| Config file: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255654/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Mon Jun 17 21:07:00 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (90.02%) | |
| Files: 10494 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| - ^caliper+cuda cuda_arch=70 | |
| Concretized | |
| -------------------------------- | |
| - bnprn6g neuron@git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| - vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake | |
| [^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake | |
| [^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| ==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g [39/55] | |
| ==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g found: installing from source | |
| ==> No patches needed for libsonata-report | |
| ==> libsonata-report: Executing phase: 'cmake' | |
| ==> libsonata-report: Executing phase: 'build' | |
| ==> libsonata-report: Executing phase: 'install' | |
| ==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g | |
| Stage: 2.59s. Cmake: 3.65s. Build: 1.17s. Install: 0.08s. Post-install: 0.10s. Total: 7.75s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| ==> Installing caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 [52/55] | |
| ==> No binary for caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 found: installing from source | |
| ==> Fetching https://github.com/LLNL/Caliper/archive/v2.11.0.tar.gz | |
| ==> No patches needed for caliper | |
| ==> caliper: Executing phase: 'cmake' | |
| ==> caliper: Executing phase: 'build' | |
| ==> caliper: Executing phase: 'install' | |
| ==> caliper: Successfully installed caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 | |
| Stage: 2.49s. Cmake: 7.52s. Build: 7.10s. Install: 0.95s. Post-install: 0.15s. Total: 18.48s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| ==> Installing neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-bnprn6guwoub4f74zhhyhh4tqphjptkp [55/55] | |
| ==> No binary for neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175=develop-bnprn6guwoub4f74zhhyhh4tqphjptkp found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 2: | |
| 'make' '-j8' | |
| 24 errors found in build log: | |
| 2878 [ 29%] Built target coreneuron-for-tests | |
| 2879 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage | |
| _externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak | |
| e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3 | |
| c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4t | |
| qphjptkp/spack-build-bnprn6g/bin/nrnivmodl-core -b STATIC -m /gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/i | |
| nstall_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46 | |
| 770aa12665_develop-53hy2e/bin/nmodl -n internal -p 4 . | |
| 2880 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub | |
| 4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/bin', compiling default o | |
| nes only! | |
| 2881 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph | |
| jptkp/spack-build-bnprn6g MECHLIB_SUFFIX=internal NMODL_BINARY=/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software | |
| /install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d | |
| 46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod | |
| 2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 2882 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g/bin' | |
| 2883 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 2884 make[3]: xcrun: No such file or directory | |
| 2885 Default NMODL flags: | |
| >> 2886 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 2887 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2888 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2889 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2890 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 2891 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM | |
| ath.h", line 984: warning: integer conversion resulted in a change | |
| of sign [integer_sign_change] | |
| 2892 const __m128i sign_mask = _mm_set1_epi16(static_cast<numext::u | |
| int16_t>(0x8000)); | |
| ... | |
| 3821 INFO:root:RX3D is DISABLED | |
| 3822 "./version_macros.mod" | |
| 3823 | |
| 3824 Creating 'x86_64' directory for .o files. | |
| 3825 | |
| 3826 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver | |
| sion_macros.o | |
| >> 3827 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta | |
| ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s | |
| ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu | |
| ptools.installer and fetch_build_eggs are deprecated. | |
| 3828 !! | |
| 3829 | |
| 3830 ********************************************************** | |
| ********************** | |
| 3831 Requirements should be satisfied by a PEP 517 installer. | |
| 3832 If you are using pip, you can try `pip install --use-pep51 | |
| 7`. | |
| 3833 ********************************************************** | |
| ********************** | |
| ... | |
| 3835 !! | |
| 3836 dist.fetch_build_eggs(dist.setup_requires) | |
| 3837 WARNING:root:WARNING: The wheel package is not available. | |
| 3838 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph | |
| jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 3839 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/c448d279dd3b9 | |
| 1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0' | |
| 3840 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 3841 make[3]: xcrun: No such file or directory | |
| 3842 Default NMODL flags: | |
| >> 3843 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 3844 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3845 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3846 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3847 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 3848 [ 42%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/oc | |
| kludge.cpp.o | |
| 3849 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217459/J1322179/spack/lib/spack/env/nvhpc/nvc++ -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS | |
| -DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-buil | |
| d/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_ | |
| develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/src/ivoc -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/ | |
| spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5 | |
| 9c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/src/n | |
| rncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102 | |
| ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/s | |
| pack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp | |
| cproj12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba | |
| 3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4 | |
| tqphjptkp/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub | |
| 4f74zhhyhh4tqphjptkp/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitl | |
| ab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-stag | |
| e-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnpr | |
| n6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/src/nr | |
| ncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217 | |
| 459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102d | |
| df4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/sp | |
| ack-build-bnprn6g/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-g | |
| it.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f | |
| 74zhhyhh4tqphjptkp/spack-build-bnprn6g/src/nrnpython -I/gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-b | |
| uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1 | |
| 75_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/sr | |
| c/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21745 | |
| 9/J1322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf | |
| 4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spac | |
| k-build-bnprn6g/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron- | |
| git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4 | |
| f74zhhyhh4tqphjptkp/spack-build-bnprn6g/src/sundials -I/gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-b | |
| uild/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad1 | |
| 75_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/sr | |
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| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187 | |
| /spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c | |
| 59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/src/ | |
| nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717b | |
| a3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh | |
| 4tqphjptkp/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/py | |
| thon-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/s | |
| sd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_gcc-12. | |
| 3.0-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/eigen - | |
| tp haswell -g -O1 -fno-omit-frame-pointer --c++17 --diag_suppress | |
| =1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -MD | |
| -MT test/api/CMakeFiles/netcon_cpp.dir/netcon.cpp.o -MF CMakeFiles | |
| /netcon_cpp.dir/netcon.cpp.o.d -o CMakeFiles/netcon_cpp.dir/netcon | |
| .cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102 | |
| ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/s | |
| pack-src/test/api/netcon.cpp | |
| 4531 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph | |
| jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4532 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/c35d2f235e0f3 | |
| 860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7' | |
| 4533 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| 4534 [ 44%] Linking CXX executable ../../bin/test/netcon_cpp | |
| 4535 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/api && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/ | |
| stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin | |
| /cmake -E cmake_link_script CMakeFiles/netcon_cpp.dir/link.txt --v | |
| erbose=1 | |
| >> 4536 make[3]: xcrun: No such file or directory | |
| 4537 Default NMODL flags: | |
| >> 4538 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4539 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322 | |
| 179/spack/lib/spack/env/nvhpc/nvc++ -tp haswell -g -O1 -fno-omit-f | |
| rame-pointer -noswitcherror -rdynamic CMakeFiles/netcon_cpp.dir/n | |
| etcon.cpp.o -o ../../bin/test/netcon_cpp -L/gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hp | |
| e-mpi-2.27.p1.hmpt-6rr256/lib -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn | |
| prn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/lib:/gpfs/bbp.c | |
| scs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0- | |
| skylake/python-3.11.6-bj4i6m/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/20 | |
| 24-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8. | |
| 2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_appli | |
| cations/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib:/gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/inst | |
| all_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64:/gpfs/bbp.cscs. | |
| ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-s | |
| kylake/adiak-0.4.0-hficqq/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.h | |
| mpt-6rr256/lib -ldl ../../lib/libnrniv.so ../../lib/libnrngnu.a .. | |
| /../lib/libsparse13.a /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st | |
| age_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/lib/ | |
| libpython3.11.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_a | |
| pplications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7/lib/lib | |
| readline.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applic | |
| ations/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libcurses | |
| .so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/i | |
| nstall_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libform.so /gpfs/ | |
| bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/in | |
| stall_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64/libcaliper.so | |
| .2.11.0 -lpthread -lpthread -ldl -lmpi -Wl,-rpath-link,/gpfs/bbp.c | |
| scs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3 | |
| .0-skylake/adiak-0.4.0-hficqq/lib | |
| 4540 [NMODL] [error] :: PROTECT statement is not supported with GPU exe | |
| cution | |
| 4541 [NMODL] [error] :: PROTECT statement is not supported with GPU exe | |
| cution | |
| 4542 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4543 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4544 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| ... | |
| 4703 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/s | |
| pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev | |
| elop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/red | |
| uced_dentate//mechanisms/kcaPR.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neu | |
| ron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guw | |
| oub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/53c432f | |
| 7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mo | |
| d | |
| 4704 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph | |
| jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4705 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/a9c54b18e4b54 | |
| 351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff' | |
| 4706 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| 4707 [ 45%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33 | |
| 00792f8f757b926b965c058a4d6ee876/Gfluct3.mod | |
| 4708 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app | |
| s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake- | |
| 3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/spack | |
| -stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop | |
| -bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/testcor | |
| enrn//mod/Gfluct3.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717b | |
| a3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh | |
| 4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/b62f97c7d3f6d905c774 | |
| d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod | |
| >> 4709 make[3]: xcrun: No such file or directory | |
| 4710 Default NMODL flags: | |
| 4711 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/c448d279dd3b91 | |
| 940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64/./libnrn | |
| mech.so" | |
| >> 4712 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4713 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| 4714 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/s | |
| pack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_dev | |
| elop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/red | |
| uced_dentate//mechanisms/na3n.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neur | |
| on-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwo | |
| ub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/53c432f7 | |
| 080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| 4715 [ 46%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33 | |
| 00792f8f757b926b965c058a4d6ee876/hhderiv.mod | |
| 4716 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app | |
| s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake- | |
| 3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/spack | |
| -stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop | |
| -bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/testcor | |
| enrn//mod/hhderiv.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717b | |
| a3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh | |
| 4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/b62f97c7d3f6d905c774 | |
| d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod | |
| 4717 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4718 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| ... | |
| 4749 | |
| 4750 Creating 'x86_64' directory for .o files. | |
| 4751 | |
| 4752 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph | |
| jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4753 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/b62f97c7d3f6d | |
| 905c774d64e10128b3300792f8f757b926b965c058a4d6ee876' | |
| 4754 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4755 make[3]: xcrun: No such file or directory | |
| 4756 Default NMODL flags: | |
| >> 4757 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4758 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4759 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4760 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4761 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4762 MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o | |
| ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_s | |
| AHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./cc | |
| anl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./ic | |
| onc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent. | |
| o | |
| 4763 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4764 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4765 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4766 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 4767 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph | |
| jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4768 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/53c432f7080fe | |
| 7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead' | |
| 4769 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4770 make[3]: xcrun: No such file or directory | |
| 4771 Default NMODL flags: | |
| >> 4772 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4773 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4774 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4775 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4776 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /gpfs/bbp | |
| .cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255654/pgcudafatbZNDdCXElu | |
| eD.o: missing .note.GNU-stack section implies executable stack | |
| 4777 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio | |
| ur is deprecated and will be removed in a future version of the li | |
| nker | |
| 4778 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/c448d279dd3b91 | |
| 940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/x86_64' | |
| ... | |
| 4815 [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows < | |
| assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| 4816 [NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assig | |
| ned_definition read_ion> definition in NMODL_GLOBAL | |
| 4817 [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows < | |
| assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| 4818 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph | |
| jptkp/spack-build-bnprn6g INCFLAGS=-I/usr/include LINKFLAGS=/usr/l | |
| ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC | |
| NRN_PRCELLSTATE=0 | |
| 4819 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/f7f437ac4f0ea | |
| 140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c' | |
| 4820 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4821 make[3]: xcrun: No such file or directory | |
| 4822 Default NMODL flags: | |
| >> 4823 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4824 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4825 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4826 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4827 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4828 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4829 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| ... | |
| 4992 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/na3n.mod /gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack- | |
| build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad | |
| 175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/t | |
| est/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd | |
| 47c3be88641a/na3n.mod | |
| 4993 [ 49%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/naxn.mod | |
| 4994 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/naxn.mod /gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack- | |
| build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad | |
| 175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g/t | |
| est/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd | |
| 47c3be88641a/naxn.mod | |
| 4995 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph | |
| jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4996 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/14c92ceb412f1 | |
| b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab' | |
| 4997 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4998 make[3]: xcrun: No such file or directory | |
| 4999 Default NMODL flags: | |
| 5000 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c389f3 | |
| 5102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjpt | |
| kp/spack-build-bnprn6g/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/inatest.cpp | |
| >> 5001 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5002 [ 49%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/netstim_inhpoisson.mod | |
| 5003 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build | |
| /spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_d | |
| evelop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/netstim_inhpoisson. | |
| mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J | |
| 1322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf405 | |
| 5a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-b | |
| uild-bnprn6g/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c16555 | |
| 2933d5963dc6fd47c3be88641a/netstim_inhpoisson.mod | |
| 5004 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5005 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5006 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5007 [ 49%] Building special[-core] for test group channel_benchmark_hi | |
| ppo | |
| ... | |
| 5028 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 5029 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 5030 MODOBJS= ./Ca.o ./CaDynamics_DC0.o ./CaDynamics_E2.o ./Ca_HVA.o ./ | |
| Ca_HVA2.o ./Ca_LVAst.o ./CoreConfig.o ./Ih.o ./Im.o ./K_Pst.o ./K_ | |
| Tst.o ./KdShu2007.o ./NaTa_t.o ./NaTg.o ./NaTs2_t.o ./Nap_Et2.o ./ | |
| ProbAMPANMDA_EMS.o ./ProbGABAAB_EMS.o ./ProfileHelper.o ./SK_E2.o | |
| ./SKv3_1.o ./TTXDynamicsSwitch.o ./VecStim.o ./cacumm.o ./cacummb. | |
| o ./cagk.o ./cal2.o ./can2.o ./cat.o ./gap.o ./h.o ./halfgap.o ./k | |
| adist.o ./kaprox.o ./kca.o ./kd.o ./kd2.o ./kdb.o ./kdrbca1.o ./kd | |
| rca1.o ./km.o ./kmb.o ./na3n.o ./naxn.o ./netstim_inhpoisson.o ./n | |
| ew_calcium_channels.o | |
| 5031 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c38 | |
| 9f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqph | |
| jptkp/spack-build-bnprn6g MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5032 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/3a24bd33c51ee | |
| 30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a' | |
| 5033 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5034 make[3]: xcrun: No such file or directory | |
| 5035 Default NMODL flags: | |
| >> 5036 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5037 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /gpfs/bbp | |
| .cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/2255654/pgcudafatJDjEPFNW5E | |
| gm.o: missing .note.GNU-stack section implies executable stack | |
| 5038 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio | |
| ur is deprecated and will be removed in a future version of the li | |
| nker | |
| 5039 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/a9c54b18e4b543 | |
| 51cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff' | |
| 5040 [INFO] MOD files built successfully for CoreNEURON | |
| 5041 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/a9c54b18e4b54 | |
| 351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64' | |
| 5042 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| ... | |
| 6279 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi_offli | |
| ne_saverestore/ringtest.py | |
| 6280 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn | |
| prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest// | |
| ringtest.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c389f351 | |
| 02ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp | |
| /spack-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi_off | |
| line_saverestore/ringtest.py | |
| 6281 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi/ringt | |
| est.py | |
| 6282 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn | |
| prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest// | |
| ringtest.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c389f351 | |
| 02ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp | |
| /spack-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi/rin | |
| gtest.py | |
| 6283 [ 55%] Generating ../../external_ringtest/coreneuron_cpu_mpi_threa | |
| ds/cell.hoc | |
| 6284 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn | |
| prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest// | |
| cell.hoc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217 | |
| 459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102d | |
| df4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/sp | |
| ack-build-bnprn6g/test/external_ringtest/coreneuron_cpu_mpi_thread | |
| s/cell.hoc | |
| >> 6285 "ampanmda.cpp", line 605: error: identifier "_globals" is undefine | |
| d | |
| 6286 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] ) | |
| ; | |
| 6287 ^ | |
| 6288 | |
| 6289 1 error detected in the compilation of "ampanmda.cpp". | |
| >> 6290 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 2 | |
| 6291 make[3]: *** Waiting for unfinished jobs.... | |
| 6292 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi_offli | |
| ne_saverestore/ringuniform.py | |
| 6293 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn | |
| prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest// | |
| ringuniform.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c389f | |
| 35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjp | |
| tkp/spack-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi_ | |
| offline_saverestore/ringuniform.py | |
| 6294 [ 55%] Generating ../../external_ringtest/coreneuron_gpu_mpi/ringu | |
| niform.py | |
| 6295 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g/test/external/ringtest && /gpfs/bbp.cscs.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.2 | |
| 7.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-st | |
| age-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bn | |
| prn6guwoub4f74zhhyhh4tqphjptkp/spack-src/external/tests/ringtest// | |
| ringuniform.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c389f | |
| 35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjp | |
| tkp/spack-build-bnprn6g/test/external_ringtest/coreneuron_gpu_mpi/ | |
| ringuniform.py | |
| 6296 [ 55%] Generating ../../external_ringtest/coreneuron_cpu_mpi_threa | |
| ds/celluniform.hoc | |
| ... | |
| 6323 [ 56%] Built target copy-scripts-external_ringtest-coreneuron_gpu_ | |
| mpi_offline_saverestore | |
| 6324 make -f test/external/ringtest/CMakeFiles/copy-scripts-external_r | |
| ingtest-coreneuron_gpu_mpi_threads.dir/build.make test/external/ri | |
| ngtest/CMakeFiles/copy-scripts-external_ringtest-coreneuron_gpu_mp | |
| i_threads.dir/depend | |
| 6325 [ 56%] Built target copy-scripts-external_ringtest-coreneuron_gpu_ | |
| mpi | |
| 6326 make -f test/external/ringtest/CMakeFiles/copy-scripts-external_r | |
| ingtest-coreneuron_mpi_registermapping_directmode.dir/build.make t | |
| est/external/ringtest/CMakeFiles/copy-scripts-external_ringtest-co | |
| reneuron_mpi_registermapping_directmode.dir/depend | |
| 6327 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g' | |
| 6328 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/14c92ceb412f1b | |
| 4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64' | |
| >> 6329 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_ | |
| nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068 | |
| 9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd | |
| a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2 | |
| 6330 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g' | |
| >> 6331 make[1]: *** [CMakeFiles/Makefile2:11803: test/external/olfactory- | |
| bulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec | |
| 75b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2 | |
| 6332 make[1]: *** Waiting for unfinished jobs.... | |
| 6333 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g' | |
| 6334 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext | |
| ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E | |
| cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub | |
| 4f74zhhyhh4tqphjptkp/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron- | |
| git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4 | |
| f74zhhyhh4tqphjptkp/spack-src/test/external/ringtest /gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-bui | |
| ld/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175 | |
| _develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g /gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/ | |
| spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5 | |
| 9c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnp | |
| rn6g/test/external/ringtest /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/test/external/ringtest/CMakeF | |
| iles/copy-scripts-external_ringtest-coreneuron_gpu_mpi_threads.dir | |
| /DependInfo.cmake "--color=" | |
| 6335 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-gi | |
| t.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f7 | |
| 4zhhyhh4tqphjptkp/spack-build-bnprn6g' | |
| 6336 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1 | |
| 322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055 | |
| a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-bu | |
| ild-bnprn6g && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext | |
| ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E | |
| cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron | |
| -git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub | |
| 4f74zhhyhh4tqphjptkp/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron- | |
| git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4 | |
| f74zhhyhh4tqphjptkp/spack-src/test/external/ringtest /gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-bui | |
| ld/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175 | |
| _develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnprn6g /gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/ | |
| spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c5 | |
| 9c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-bnp | |
| rn6g/test/external/ringtest /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/test/external/ringtest/CMakeF | |
| iles/copy-scripts-external_ringtest-coreneuron_mpi_registermapping | |
| _directmode.dir/DependInfo.cmake "--color=" | |
| 6337 [ 56%] Generating ../../external_ringtest/coreneuron_gpu_mpi_offli | |
| ne/args.py | |
| ... | |
| 6805 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio | |
| ur is deprecated and will be removed in a future version of the li | |
| nker | |
| 6806 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g/test/nrnivmodl/3a24bd33c51ee3 | |
| 0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64' | |
| 6807 Successfully created x86_64/special | |
| 6808 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g' | |
| 6809 [ 57%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1 | |
| 46a37c165552933d5963dc6fd47c3be88641a | |
| 6810 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git | |
| .7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74 | |
| zhhyhh4tqphjptkp/spack-build-bnprn6g' | |
| >> 6811 make: *** [Makefile:169: all] Error 2 | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322187/spack-build/spack-stage-neuron-git.7717ba3c389f35102ddf4055a9971c59c72ad175_develop-bnprn6guwoub4f74zhhyhh4tqphjptkp/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r4i6n18: task 0: Exited with exit code 1 | |
| section_end:1718652749:step_script [0Ksection_start:1718652749:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=129753 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1322187 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=129794 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1322187 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=129836 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1322187 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1718652751:upload_artifacts_on_failure [0Ksection_start:1718652751:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1718652752:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1718650793:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1718650793:resolve_secrets [0Ksection_start:1718650793:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor906217474, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 217459, build ref , job ID 1322181 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1322181_PROD_P2160_CP1_C3 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2255634 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322181_PROD_P2160_CP1_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459 --ntasks=2 --jobid=2255634 --cpus-per-task=8 --mem=160G | |
| section_end:1718650795:prepare_executor [0Ksection_start:1718650795:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n21 via bbpv1.epfl.ch... | |
| section_end:1718650799:prepare_script [0Ksection_start:1718650799:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1718650800:get_sources [0Ksection_start:1718650800:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=32927 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1718650821:restore_cache [0Ksection_start:1718650821:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for spack_setup (1322179)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=33078 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1322179 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1718650822:download_artifacts [0Ksection_start:1718650822:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322181/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322181/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322181/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322181/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322181/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322181/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/J1322179/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217459/J1322181_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2255634/ccache | |
| Config file: /nvme/bbpcihpcproj12/2255634/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Mon Jun 17 21:00:26 2024 | |
| Local storage: | |
| Cache size (GB): 0.45 / 0.51 (87.21%) | |
| Files: 5139 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - 53hy2ex nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459, but it is owned by 0 | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| ==> Installing nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665=develop-53hy2ex7xntc24cnbuojh6rrc3l2auap [19/19] | |
| ==> No binary for nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665=develop-53hy2ex7xntc24cnbuojh6rrc3l2auap found: installing from source | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665=develop-53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| Stage: 1m 16.14s. Cmake: 19.37s. Build: 1m 42.76s. Install: 1.48s. Post-install: 0.36s. Total: 3m 20.38s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217459/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be 53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2255634/ccache | |
| Config file: /nvme/bbpcihpcproj12/2255634/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Mon Jun 17 21:05:59 2024 | |
| Cacheable calls: 138 / 165 (83.64%) | |
| Hits: 136 / 138 (98.55%) | |
| Direct: 28 / 136 (20.59%) | |
| Preprocessed: 108 / 136 (79.41%) | |
| Misses: 2 / 138 ( 1.45%) | |
| Uncacheable calls: 27 / 165 (16.36%) | |
| Called for linking: 24 / 27 (88.89%) | |
| No input file: 3 / 27 (11.11%) | |
| Successful lookups: | |
| Direct: 28 / 138 (20.29%) | |
| Preprocessed: 108 / 110 (98.18%) | |
| Local storage: | |
| Cache size (GB): 0.45 / 0.51 (87.21%) | |
| Files: 5143 | |
| Hits: 136 / 138 (98.55%) | |
| Misses: 2 / 138 ( 1.45%) | |
| Reads: 276 | |
| Writes: 4 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1718651160:step_script [0Ksection_start:1718651160:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=37980 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1718651183:archive_cache [0Ksection_start:1718651183:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=39086 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1322181 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=39126 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1322181 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=39165 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1322181 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1718651185:upload_artifacts_on_success [0Ksection_start:1718651185:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1718651186:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m | |
| [0K on macos-arm64 vGzz-bdp[0;m | |
| section_start:1718650580:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1718650580:resolve_secrets [0Ksection_start:1718650580:prepare_executor [0K[0K[36;1mPreparing the "shell" executor[0;m[0;m | |
| [0KUsing Shell executor...[0;m | |
| section_end:1718650580:prepare_executor [0Ksection_start:1718650580:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on bbpmacglr01.bbp.epfl.ch... | |
| section_end:1718650580:prepare_script [0Ksection_start:1718650580:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mFetching changes with git depth set to 20...[0;m | |
| Initialized empty Git repository in /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/.git/ | |
| [32;1mCreated fresh repository.[0;m | |
| [32;1mChecking out 7717ba3c as cornu/use_globals...[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1718650582:get_sources [0Ksection_start:1718650582:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-cornu/use_globals-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=28098 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
| No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1718650582:restore_cache [0Ksection_start:1718650582:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ real_python=$(python3 resolve_shim.py)[0;m | |
| [32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m | |
| python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python | |
| [32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m | |
| [32;1m$ venv/bin/python3 -m ensurepip --upgrade --default-pip[0;m | |
| Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmp3ro04u4q | |
| Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmp3ro04u4q/setuptools-68.2.2-py3-none-any.whl | |
| Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmp3ro04u4q/pip-23.3.1-py3-none-any.whl | |
| Installing collected packages: setuptools, pip | |
| Successfully installed pip-23.3.1 setuptools-68.2.2 | |
| [32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m | |
| Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl' | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl'... | |
| From https://github.com/BlueBrain/nmodl | |
| * branch c5ecfea39cbd53ffcc248b1dcf732c1e0ae1ffc4 -> FETCH_HEAD | |
| Submodule path 'external/nmodl': checked out 'c5ecfea39cbd53ffcc248b1dcf732c1e0ae1ffc4' | |
| Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions' | |
| Submodule 'ext/backward' (https://github.com/bombela/backward-cpp.git) registered for path 'external/nmodl/ext/backward' | |
| Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2' | |
| Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11' | |
| Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen' | |
| Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt' | |
| Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json' | |
| Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11' | |
| Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog' | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/ext/backward'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/ext/catch2'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/ext/cli11'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/ext/eigen'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/ext/fmt'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/ext/json'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/ext/pybind11'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/ext/spdlog'... | |
| From https://github.com/BlueBrain/hpc-coding-conventions | |
| * branch f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD | |
| Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d' | |
| Submodule path 'external/nmodl/ext/backward': checked out '51f0700452cf71c57d43c2d028277b24cde32502' | |
| From https://github.com/catchorg/Catch2 | |
| * branch 8ac8190e494a381072c89f5e161b92a08d98b37b -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b' | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch f4d0731cebb123ff0ace712c099dffbcd2c58e5a -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/cli11': checked out 'f4d0731cebb123ff0ace712c099dffbcd2c58e5a' | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
| From https://github.com/fmtlib/fmt | |
| * branch e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281' | |
| From https://github.com/nlohmann/json | |
| * branch 9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/json': checked out '9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03' | |
| From https://github.com/pybind/pybind11 | |
| * branch 3e9dfa2866941655c56877882565e7577de6fc7b -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/pybind11': checked out '3e9dfa2866941655c56877882565e7577de6fc7b' | |
| From https://github.com/gabime/spdlog | |
| * branch 7c02e204c92545f869e2f04edaab1f19fe8b19fd -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/spdlog': checked out '7c02e204c92545f869e2f04edaab1f19fe8b19fd' | |
| [32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m | |
| Ignoring importlib-metadata: markers 'python_version < "3.9"' don't match your environment | |
| Ignoring importlib-resources: markers 'python_version < "3.9"' don't match your environment | |
| Collecting scikit-build-core (from -r external/nmodl/requirements.txt (line 2)) | |
| Using cached scikit_build_core-0.9.6-py3-none-any.whl.metadata (19 kB) | |
| Collecting setuptools-scm>=8.0 (from -r external/nmodl/requirements.txt (line 3)) | |
| Using cached setuptools_scm-8.1.0-py3-none-any.whl.metadata (6.6 kB) | |
| Collecting Jinja2>=2.9.3 (from -r external/nmodl/requirements.txt (line 4)) | |
| Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting PyYAML>=3.13 (from -r external/nmodl/requirements.txt (line 5)) | |
| Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB) | |
| Collecting find_libpython (from -r external/nmodl/requirements.txt (line 7)) | |
| Using cached find_libpython-0.4.0-py3-none-any.whl.metadata (2.8 kB) | |
| Collecting sympy>=1.3 (from -r external/nmodl/requirements.txt (line 8)) | |
| Using cached sympy-1.12.1-py3-none-any.whl.metadata (12 kB) | |
| Collecting pytest<=8.1.1 (from -r external/nmodl/requirements.txt (line 12)) | |
| Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB) | |
| Collecting pytest-cov (from -r external/nmodl/requirements.txt (line 13)) | |
| Using cached pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB) | |
| Collecting numpy (from -r external/nmodl/requirements.txt (line 14)) | |
| Using cached numpy-2.0.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (114 kB) | |
| Collecting jupyter-client (from -r external/nmodl/requirements.txt (line 16)) | |
| Using cached jupyter_client-8.6.2-py3-none-any.whl.metadata (8.3 kB) | |
| Collecting jupyter (from -r external/nmodl/requirements.txt (line 17)) | |
| Using cached jupyter-1.0.0-py2.py3-none-any.whl.metadata (995 bytes) | |
| Collecting myst_parser<2.0.0 (from -r external/nmodl/requirements.txt (line 18)) | |
| Using cached myst_parser-1.0.0-py3-none-any.whl.metadata (5.5 kB) | |
| Collecting mistune<3 (from -r external/nmodl/requirements.txt (line 19)) | |
| Using cached mistune-2.0.5-py2.py3-none-any.whl.metadata (1.5 kB) | |
| Collecting nbconvert (from -r external/nmodl/requirements.txt (line 20)) | |
| Using cached nbconvert-7.16.4-py3-none-any.whl.metadata (8.5 kB) | |
| Collecting nbsphinx>=0.3.2 (from -r external/nmodl/requirements.txt (line 21)) | |
| Using cached nbsphinx-0.9.4-py3-none-any.whl.metadata (2.1 kB) | |
| Collecting sphinxcontrib-applehelp<1.0.3 (from -r external/nmodl/requirements.txt (line 22)) | |
| Using cached sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl.metadata (1.4 kB) | |
| Collecting sphinxcontrib-htmlhelp<=2.0.0 (from -r external/nmodl/requirements.txt (line 23)) | |
| Using cached sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl.metadata (1.6 kB) | |
| Collecting sphinx<6 (from -r external/nmodl/requirements.txt (line 24)) | |
| Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB) | |
| Collecting sphinx-rtd-theme (from -r external/nmodl/requirements.txt (line 25)) | |
| Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl.metadata (4.4 kB) | |
| Collecting docutils<0.20 (from -r external/nmodl/requirements.txt (line 26)) | |
| Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB) | |
| Collecting exceptiongroup>=1.0 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached exceptiongroup-1.2.1-py3-none-any.whl.metadata (6.6 kB) | |
| Collecting packaging>=21.3 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) | |
| Collecting pathspec>=0.10.1 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached pathspec-0.12.1-py3-none-any.whl.metadata (21 kB) | |
| Collecting tomli>=1.2.2 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB) | |
| Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from setuptools-scm>=8.0->-r external/nmodl/requirements.txt (line 3)) (68.2.2) | |
| Collecting MarkupSafe>=2.0 (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 4)) | |
| Using cached MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB) | |
| Collecting mpmath<1.4.0,>=1.1.0 (from sympy>=1.3->-r external/nmodl/requirements.txt (line 8)) | |
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| Collecting fqdn (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
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| Collecting isoduration (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached isoduration-20.11.0-py3-none-any.whl.metadata (5.7 kB) | |
| Collecting jsonpointer>1.13 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
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| Collecting webcolors>=1.11 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
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| Collecting cffi>=1.0.1 (from argon2-cffi-bindings->argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
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| Collecting pycparser (from cffi>=1.0.1->argon2-cffi-bindings->argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
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| Collecting arrow>=0.15.0 (from isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
| Using cached arrow-1.3.0-py3-none-any.whl.metadata (7.5 kB) | |
| Collecting types-python-dateutil>=2.8.10 (from arrow>=0.15.0->isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
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| Installing collected packages: webencodings, wcwidth, snowballstemmer, pure-eval, ptyprocess, mpmath, mistune, find_libpython, fastjsonschema, widgetsnbextension, websocket-client, webcolors, urllib3, uri-template, typing-extensions, types-python-dateutil, traitlets, tornado, tomli, tinycss2, sympy, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, sniffio, six, send2trash, rpds-py, rfc3986-validator, pyzmq, PyYAML, python-json-logger, pygments, pycparser, psutil, prompt-toolkit, prometheus-client, pluggy, platformdirs, pexpect, pathspec, parso, pandocfilters, packaging, overrides, numpy, nest-asyncio, mdurl, MarkupSafe, jupyterlab-widgets, jupyterlab-pygments, jsonpointer, json5, iniconfig, imagesize, idna, h11, fqdn, executing, exceptiongroup, docutils, defusedxml, decorator, debugpy, coverage, charset-normalizer, certifi, babel, attrs, appnope, alabaster, terminado, setuptools-scm, scikit-build-core, rfc3339-validator, requests, referencing, qtpy, python-dateutil, pytest, matplotlib-inline, markdown-it-py, jupyter-core, Jinja2, jedi, httpcore, comm, cffi, bleach, beautifulsoup4, async-lru, asttokens, anyio, stack-data, sphinx, pytest-cov, mdit-py-plugins, jupyter-server-terminals, jupyter-client, jsonschema-specifications, httpx, arrow, argon2-cffi-bindings, sphinxcontrib-jquery, myst_parser, jsonschema, isoduration, ipython, argon2-cffi, sphinx-rtd-theme, nbformat, ipywidgets, ipykernel, qtconsole, nbclient, jupyter-events, jupyter-console, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, notebook, jupyter | |
| Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 PyYAML-6.0.1 alabaster-0.7.16 anyio-4.4.0 appnope-0.1.4 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 asttokens-2.4.1 async-lru-2.0.4 attrs-23.2.0 babel-2.15.0 beautifulsoup4-4.12.3 bleach-6.1.0 certifi-2024.6.2 cffi-1.16.0 charset-normalizer-3.3.2 comm-0.2.2 coverage-7.5.3 debugpy-1.8.1 decorator-5.1.1 defusedxml-0.7.1 docutils-0.19 exceptiongroup-1.2.1 executing-2.0.1 fastjsonschema-2.20.0 find_libpython-0.4.0 fqdn-1.5.1 h11-0.14.0 httpcore-1.0.5 httpx-0.27.0 idna-3.7 imagesize-1.4.1 iniconfig-2.0.0 ipykernel-6.29.4 ipython-8.25.0 ipywidgets-8.1.3 isoduration-20.11.0 jedi-0.19.1 json5-0.9.25 jsonpointer-3.0.0 jsonschema-4.22.0 jsonschema-specifications-2023.12.1 jupyter-1.0.0 jupyter-client-8.6.2 jupyter-console-6.6.3 jupyter-core-5.7.2 jupyter-events-0.10.0 jupyter-lsp-2.2.5 jupyter-server-2.14.1 jupyter-server-terminals-0.5.3 jupyterlab-4.2.2 jupyterlab-pygments-0.3.0 jupyterlab-server-2.27.2 jupyterlab-widgets-3.0.11 markdown-it-py-2.2.0 matplotlib-inline-0.1.7 mdit-py-plugins-0.3.5 mdurl-0.1.2 mistune-2.0.5 mpmath-1.3.0 myst_parser-1.0.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.9.4 nest-asyncio-1.6.0 notebook-7.2.1 notebook-shim-0.2.4 numpy-2.0.0 overrides-7.7.0 packaging-24.1 pandocfilters-1.5.1 parso-0.8.4 pathspec-0.12.1 pexpect-4.9.0 platformdirs-4.2.2 pluggy-1.5.0 prometheus-client-0.20.0 prompt-toolkit-3.0.47 psutil-5.9.8 ptyprocess-0.7.0 pure-eval-0.2.2 pycparser-2.22 pygments-2.18.0 pytest-8.1.1 pytest-cov-5.0.0 python-dateutil-2.9.0.post0 python-json-logger-2.0.7 pyzmq-26.0.3 qtconsole-5.5.2 qtpy-2.4.1 referencing-0.35.1 requests-2.32.3 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.18.1 scikit-build-core-0.9.6 send2trash-1.8.3 setuptools-scm-8.1.0 six-1.16.0 sniffio-1.3.1 snowballstemmer-2.2.0 soupsieve-2.5 sphinx-5.3.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 stack-data-0.6.3 sympy-1.12.1 terminado-0.18.1 tinycss2-1.3.0 tomli-2.0.1 tornado-6.4.1 traitlets-5.14.3 types-python-dateutil-2.9.0.20240316 typing-extensions-4.12.2 uri-template-1.3.0 urllib3-2.2.2 wcwidth-0.2.13 webcolors-24.6.0 webencodings-0.5.1 websocket-client-1.8.0 widgetsnbextension-4.0.11 | |
| [notice] A new release of pip is available: 23.3.1 -> 24.0 | |
| [notice] To update, run: /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/venv/bin/python3 -m pip install --upgrade pip | |
| [32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m | |
| Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1) | |
| Collecting pip | |
| Using cached pip-24.0-py3-none-any.whl.metadata (3.6 kB) | |
| Collecting wheel (from -r nrn_requirements.txt (line 1)) | |
| Using cached wheel-0.43.0-py3-none-any.whl.metadata (2.2 kB) | |
| Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (68.2.2) | |
| Collecting setuptools (from -r nrn_requirements.txt (line 2)) | |
| Using cached setuptools-70.0.0-py3-none-any.whl.metadata (5.9 kB) | |
| Requirement already satisfied: setuptools_scm in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 3)) (8.1.0) | |
| Collecting scikit-build (from -r nrn_requirements.txt (line 4)) | |
| Using cached scikit_build-0.17.6-py3-none-any.whl.metadata (14 kB) | |
| Collecting matplotlib (from -r nrn_requirements.txt (line 5)) | |
| Using cached matplotlib-3.9.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (11 kB) | |
| Collecting bokeh<3 (from -r nrn_requirements.txt (line 7)) | |
| Using cached bokeh-2.4.3-py3-none-any.whl.metadata (14 kB) | |
| Requirement already satisfied: ipython in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 8)) (8.25.0) | |
| Collecting cython<3 (from -r nrn_requirements.txt (line 9)) | |
| Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB) | |
| Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 10)) (24.1) | |
| Requirement already satisfied: pytest<=8.1.1 in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 11)) (8.1.1) | |
| Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 12)) (5.0.0) | |
| Collecting mpi4py (from -r nrn_requirements.txt (line 13)) | |
| Using cached mpi4py-3.1.6-cp310-cp310-macosx_12_0_arm64.whl | |
| Collecting numpy<2 (from -r nrn_requirements.txt (line 14)) | |
| Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB) | |
| Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 15)) (0.4.0) | |
| Requirement already satisfied: tomli>=1 in ./venv/lib/python3.10/site-packages (from setuptools_scm->-r nrn_requirements.txt (line 3)) (2.0.1) | |
| Collecting distro (from scikit-build->-r nrn_requirements.txt (line 4)) | |
| Using cached distro-1.9.0-py3-none-any.whl.metadata (6.8 kB) | |
| Collecting contourpy>=1.0.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB) | |
| Collecting cycler>=0.10 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) | |
| Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (162 kB) | |
| Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB) | |
| Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.2 kB) | |
| Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB) | |
| Requirement already satisfied: python-dateutil>=2.7 in ./venv/lib/python3.10/site-packages (from matplotlib->-r nrn_requirements.txt (line 5)) (2.9.0.post0) | |
| Requirement already satisfied: Jinja2>=2.9 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (3.1.4) | |
| Requirement already satisfied: PyYAML>=3.10 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (6.0.1) | |
| Requirement already satisfied: tornado>=5.1 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (6.4.1) | |
| Requirement already satisfied: typing-extensions>=3.10.0 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (4.12.2) | |
| Requirement already satisfied: decorator in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (5.1.1) | |
| Requirement already satisfied: jedi>=0.16 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.19.1) | |
| Requirement already satisfied: matplotlib-inline in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.1.7) | |
| Requirement already satisfied: prompt-toolkit<3.1.0,>=3.0.41 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (3.0.47) | |
| Requirement already satisfied: pygments>=2.4.0 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (2.18.0) | |
| Requirement already satisfied: stack-data in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.6.3) | |
| Requirement already satisfied: traitlets>=5.13.0 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (5.14.3) | |
| Requirement already satisfied: exceptiongroup in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (1.2.1) | |
| Requirement already satisfied: pexpect>4.3 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (4.9.0) | |
| Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r nrn_requirements.txt (line 11)) (2.0.0) | |
| Requirement already satisfied: pluggy<2.0,>=1.4 in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r nrn_requirements.txt (line 11)) (1.5.0) | |
| Requirement already satisfied: coverage>=5.2.1 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=5.2.1->pytest-cov->-r nrn_requirements.txt (line 12)) (7.5.3) | |
| Requirement already satisfied: parso<0.9.0,>=0.8.3 in ./venv/lib/python3.10/site-packages (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 8)) (0.8.4) | |
| Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9->bokeh<3->-r nrn_requirements.txt (line 7)) (2.1.5) | |
| Requirement already satisfied: ptyprocess>=0.5 in ./venv/lib/python3.10/site-packages (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 8)) (0.7.0) | |
| Requirement already satisfied: wcwidth in ./venv/lib/python3.10/site-packages (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 8)) (0.2.13) | |
| Requirement already satisfied: six>=1.5 in ./venv/lib/python3.10/site-packages (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5)) (1.16.0) | |
| Requirement already satisfied: executing>=1.2.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (2.0.1) | |
| Requirement already satisfied: asttokens>=2.1.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (2.4.1) | |
| Requirement already satisfied: pure-eval in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (0.2.2) | |
| Using cached pip-24.0-py3-none-any.whl (2.1 MB) | |
| Using cached wheel-0.43.0-py3-none-any.whl (65 kB) | |
| Using cached setuptools-70.0.0-py3-none-any.whl (863 kB) | |
| Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB) | |
| Using cached matplotlib-3.9.0-cp310-cp310-macosx_11_0_arm64.whl (7.8 MB) | |
| Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB) | |
| Using cached Cython-0.29.37-py2.py3-none-any.whl (989 kB) | |
| Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB) | |
| Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl (244 kB) | |
| Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB) | |
| Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl (2.2 MB) | |
| Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB) | |
| Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl (3.4 MB) | |
| Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB) | |
| Using cached distro-1.9.0-py3-none-any.whl (20 kB) | |
| Installing collected packages: wheel, setuptools, pyparsing, pip, pillow, numpy, mpi4py, kiwisolver, fonttools, distro, cython, cycler, scikit-build, contourpy, bokeh, matplotlib | |
| Attempting uninstall: setuptools | |
| Found existing installation: setuptools 68.2.2 | |
| Uninstalling setuptools-68.2.2: | |
| Successfully uninstalled setuptools-68.2.2 | |
| Attempting uninstall: pip | |
| Found existing installation: pip 23.3.1 | |
| Uninstalling pip-23.3.1: | |
| Successfully uninstalled pip-23.3.1 | |
| Attempting uninstall: numpy | |
| Found existing installation: numpy 2.0.0 | |
| Uninstalling numpy-2.0.0: | |
| Successfully uninstalled numpy-2.0.0 | |
| Successfully installed bokeh-2.4.3 contourpy-1.2.1 cycler-0.12.1 cython-0.29.37 distro-1.9.0 fonttools-4.53.0 kiwisolver-1.4.5 matplotlib-3.9.0 mpi4py-3.1.6 numpy-1.26.4 pillow-10.3.0 pip-24.0 pyparsing-3.1.2 scikit-build-0.17.6 setuptools-70.0.0 wheel-0.43.0 | |
| [32;1m$ source ./venv/bin/activate[0;m | |
| [32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m | |
| [32;1m$ ${PYTHON} --version[0;m | |
| Python 3.10.13 | |
| [32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m | |
| [32;1m$ export CXX=${CXX:-g++}[0;m | |
| [32;1m$ export CC=${CC:-gcc}[0;m | |
| [32;1m$ brew install flex bison[0;m | |
| Warning: flex 2.6.4_2 is already installed and up-to-date. | |
| To reinstall 2.6.4_2, run: | |
| brew reinstall flex | |
| Warning: bison 3.8.2 is already installed and up-to-date. | |
| To reinstall 3.8.2, run: | |
| brew reinstall bison | |
| [32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m | |
| [32;1m$ export INSTALL_DIR=$(pwd)/install[0;m | |
| [32;1m$ echo $LANG[0;m | |
| [32;1m$ echo $LC_ALL[0;m | |
| [32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m | |
| [32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m | |
| [32;1m$ cmake_args=(-G Ninja)[0;m | |
| [32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m | |
| [32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m | |
| [32;1m$ mkdir build && cd build[0;m | |
| [32;1m$ echo "Building with ${cmake_args[@]}"[0;m | |
| Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/venv/bin/python | |
| [32;1m$ cmake .. "${cmake_args[@]}"[0;m | |
| -- The C compiler identification is AppleClang 14.0.0.14000029 | |
| -- The CXX compiler identification is AppleClang 14.0.0.14000029 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /usr/bin/gcc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /usr/bin/g++ - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check | |
| -- Sub-module : missing external/coding-conventions : running git submodule update --init | |
| Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions' | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/coding-conventions'... | |
| Submodule path 'external/coding-conventions': checked out '3d157f9c8ea94d196a825aaa7f523265e360dc4b' | |
| -- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123 | |
| Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123' | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/Random123'... | |
| From https://github.com/BlueBrain/Random123 | |
| * branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD | |
| Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1' | |
| -- 3rd party project: using Random123 from "external/Random123" | |
| -- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen | |
| Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen' | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/eigen'... | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
| Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
| -- 3rd party project: using eigen from "external/eigen" | |
| -- Enabling sanitizers: address | |
| -- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| -- Checking if /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/venv/bin/python is a working python | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") | |
| -- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6") | |
| -- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include | |
| -- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
| -- Found Threads: TRUE | |
| -- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11 | |
| Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11' | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/CLI11'... | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD | |
| Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2' | |
| -- 3rd party project: using CLI11 from "external/CLI11" | |
| CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required): | |
| Compatibility with CMake < 3.5 will be removed from a future version of | |
| CMake. | |
| Update the VERSION argument <min> value or use a ...<max> suffix to tell | |
| CMake that the project does not need compatibility with older versions. | |
| -- Building CoreNEURON | |
| -- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") | |
| -- Found Perl: /usr/bin/perl (found version "5.30.3") | |
| -- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH) | |
| -- Sub-project : using nmodl from from /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl | |
| -- CHECKING FOR FLEX/BISON | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") | |
| -- Adding Flex include path as : /opt/homebrew/opt/flex/include/ | |
| -- NMODL_TEST_FORMATTING: OFF | |
| -- NMODL_GIT_HOOKS: OFF | |
| -- NMODL_GIT_COMMIT_HOOKS: | |
| -- NMODL_GIT_PUSH_HOOKS: courtesy-msg | |
| -- NMODL_STATIC_ANALYSIS: OFF | |
| -- NMODL_TEST_STATIC_ANALYSIS: OFF | |
| -- 3rd party project: using eigen from "ext/eigen" | |
| -- 3rd party project: using fmt from "ext/fmt" | |
| -- Version: 10.2.1 | |
| -- Build type: Custom | |
| -- 3rd party project: using json from "ext/json" | |
| -- Using the multi-header code from /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/ext/json/include/ | |
| -- 3rd party project: using pybind11 from "ext/pybind11" | |
| -- pybind11 v2.12.0 | |
| -- Found PythonInterp: /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.6") | |
| -- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- 3rd party project: using spdlog from "ext/spdlog" | |
| -- Build spdlog: 1.13.0 | |
| -- Build type: Custom | |
| -- CHECKING FOR PYTHON | |
| -- Found Python: /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/venv/bin/python3.10 (found suitable version "3.10.13", minimum required is "3.8") found components: Interpreter | |
| CMake Warning (dev) at external/nmodl/src/pybind/CMakeLists.txt:27 (configure_file): | |
| configure_file called with unknown argument(s): | |
| @ONLY@ | |
| This warning is for project developers. Use -Wno-dev to suppress it. | |
| -- | |
| -- Configured NMODL 0.0 (c5ecfea 2024-06-10 16:25:23 +0200) | |
| -- | |
| -- You can now build NMODL using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------------+-------------------------------------------------------- | |
| -- test | Run unit tests | |
| -- install | Will install NMODL to: /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/install | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd | |
| -- Build Type | Custom | |
| -- Python Bindings | OFF | |
| -- Flex | /opt/homebrew/opt/flex/bin/flex | |
| -- Bison | /opt/homebrew/opt/bison/bin/bison | |
| -- Python | /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/venv/bin/python | |
| -- Linked against | ON | |
| -- --------------------+-------------------------------------------------------- | |
| -- See documentation : https://github.com/BlueBrain/nmodl/ | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| -- | |
| -- CoreNEURON is enabled with following build configuration: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
| -- Build Type | SHARED | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
| -- OpenMP | ON | |
| -- NMODL PATH | /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/bin/nmodl | |
| -- NMODL FLAGS | | |
| -- GPU Support | OFF | |
| -- Auto Timeout | ON | |
| -- Wrap exp() | OFF | |
| -- SplayTree Queue | ON | |
| -- NetReceive Buffer | ON | |
| -- Caliper | OFF | |
| -- Likwid | OFF | |
| -- Unit Tests | ON | |
| -- Reporting | OFF | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| Extracting link flags from target 'nrngnu', beware that this can be fragile. Got: | |
| Extracting link flags from target 'sparse13', beware that this can be fragile. Got: | |
| Generating link flags from name 'nrnpython', beware that this can be fragile. Got: -lnrnpython | |
| Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: -lnrnpython | |
| Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
| -- Sub-module : missing /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/catch2 : running git submodule update --init | |
| Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2' | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/catch2'... | |
| Submodule path 'external/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b' | |
| -- Found Python module 'pytest' with version(s): 8.1.1 | |
| -- Found Python module 'pytest_cov' with version(s): 5.0.0 | |
| -- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata | |
| Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata' | |
| Cloning into '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/test/rxd/testdata'... | |
| From https://github.com/neuronsimulator/rxdtestdata | |
| * branch 30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD | |
| Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58' | |
| -- 3rd party project: using rxd/testdata from "test/rxd/testdata" | |
| -- Found Python module 'mpi4py' with version(s): 3.1.6 | |
| -- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled | |
| -- Found Python module 'mpi4py' with version(s): 3.1.6 | |
| -- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled | |
| -- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled | |
| -- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0") | |
| -- | |
| -- Configured NEURON 9.0.0 | |
| -- | |
| -- You can now build NEURON using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------+-------------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------+-------------------------------------------------------------- | |
| -- install | Will install NEURON to: /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/install | |
| -- | Change the install location of NEURON using: | |
| -- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path> | |
| -- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean | |
| -- uninstall | Removes files installed by make install (todo) | |
| -- --------------+-------------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------+-------------------------------------------------------------- | |
| -- C COMPILER | /usr/bin/gcc | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug) | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd | |
| -- Shared | ON | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
| -- LIB | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
| -- Python | ON | |
| -- DYNAMIC | OFF | |
| -- MODULE | ON | |
| -- python3.10 (default) | |
| -- EXE | /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/venv/bin/python | |
| -- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 | |
| -- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd | |
| -- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd | |
| -- RX3D | OFF | |
| -- Interviews | OFF | |
| -- CoreNEURON | ON | |
| -- PATH | /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/coreneuron | |
| -- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
| -- Tests | ON | |
| -- --------------+-------------------------------------------------------------- | |
| -- See documentation : https://www.neuron.yale.edu/neuron/ | |
| -- --------------+-------------------------------------------------------------- | |
| -- | |
| -- Configuring done (23.6s) | |
| -- Generating done (0.2s) | |
| -- Build files have been written to: /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build | |
| [32;1m$ ccache -z[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache -vs 2>/dev/null[0;m | |
| Cache directory: /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/ccache | |
| Config file: /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/ccache/ccache.conf | |
| System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf | |
| Stats updated: Mon Jun 17 20:57:41 2024 | |
| Local storage: | |
| Cache size (GiB): 0.0 / 5.0 ( 0.00%) | |
| Files: 0 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ cmake --build . --parallel[0;m | |
| [0/2] Re-checking globbed directories... | |
| [1/1930] Generating share/nrn/demo/d3init.hoc | |
| [2/1930] Generating share/nrn/demo/demo.hoc | |
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| [7/1930] Generating share/nrn/demo/dend3/dend3.nrn | |
| [8/1930] Generating share/nrn/demo/dend3/syn3.hoc | |
| [9/1930] Generating share/nrn/demo/dynchan.ses | |
| [10/1930] Generating share/nrn/demo/dynclamp.hoc | |
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| [12/1930] Generating share/nrn/demo/hh.hoc | |
| [13/1930] Generating share/nrn/demo/pyramid.nrn | |
| [14/1930] Generating share/nrn/demo/hh.ses | |
| [15/1930] Generating share/nrn/demo/nomodel.hoc | |
| [16/1930] Generating share/nrn/demo/pyramid.ses | |
| [17/1930] Generating share/nrn/demo/reconst.hoc | |
| [18/1930] Update hh.mod for CoreNEURON compatibility | |
| [19/1930] Generating share/nrn/demo/release.hoc | |
| [20/1930] Generating share/nrn/demo/release/cabpump.mod | |
| [21/1930] Generating share/nrn/demo/release/cachan1.mod | |
| [22/1930] Generating share/nrn/demo/release/camchan.mod | |
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| [24/1930] Generating share/nrn/demo/release/capump.mod | |
| [25/1930] Generating share/nrn/demo/release/invlfire.mod | |
| [26/1930] Generating share/nrn/demo/release/khhchan.mod | |
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| [28/1930] Generating share/nrn/demo/release/nacaex.mod | |
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| [30/1930] Generating share/nrn/demo/singhh.hoc | |
| [31/1930] Generating share/nrn/demo/singhh.ses | |
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| [37/1930] Generating share/nrn/demo/sync/start.ses | |
| [38/1930] Generating share/nrn/demo/sync/spkplot.hoc | |
| [39/1930] Generating share/nrn/lib/auditscripts/gettarname | |
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| [41/1930] Generating share/nrn/lib/auditscripts/hocaudit.sh | |
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| [468/1930] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/memory_utils.cpp.o | |
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| [470/1930] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrn_stats.cpp.o | |
| [471/1930] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/__/__/coreneuron/config/config.cpp.o | |
| [472/1930] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/nrnoc_aux.cpp.o | |
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| [474/1930] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/randoms/nrnran123.cpp.o | |
| [475/1930] -- NMODL : GENERATING AST CLASSES WITH PYTHON GENERATOR! -- | |
| [476/1930] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/mpi/core/resolve.cpp.o | |
| [477/1930] -- NMODL : GENERATING VERBATIM PARSER WITH BISON! -- | |
| ../../../../../external/nmodl/src/parser/verbatim.yy:29.1-24: warning: deprecated directive: '%name-prefix "Verbatim_"', use '%define api.prefix {Verbatim_}' [-Wdeprecated] | |
| 29 | %name-prefix "Verbatim_" | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.prefix {Verbatim_} | |
| ../../../../../external/nmodl/src/parser/verbatim.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
| [478/1930] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/vrecord.cpp.o | |
| [479/1930] -- NMODL : GENERATING DIFFERENTIAL EQUATION PARSER WITH BISON! -- | |
| ../../../../../external/nmodl/src/parser/diffeq.yy:56.1-40: warning: deprecated directive: '%define parser_class_name {DiffeqParser}', use '%define api.parser.class {DiffeqParser}' [-Wdeprecated] | |
| 56 | %define parser_class_name {DiffeqParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {DiffeqParser} | |
| ../../../../../external/nmodl/src/parser/diffeq.yy: warning: 2 shift/reduce conflicts [-Wconflicts-sr] | |
| ../../../../../external/nmodl/src/parser/diffeq.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| ../../../../../external/nmodl/src/parser/diffeq.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
| [480/1930] -- NMODL : GENERATING UNIT PARSER WITH BISON! -- | |
| ../../../../../external/nmodl/src/parser/unit.yy:49.1-38: warning: deprecated directive: '%define parser_class_name {UnitParser}', use '%define api.parser.class {UnitParser}' [-Wdeprecated] | |
| 49 | %define parser_class_name {UnitParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {UnitParser} | |
| ../../../../../external/nmodl/src/parser/unit.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
| [481/1930] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/blame.cpp.o | |
| [482/1930] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/nmodl_printer.cpp.o | |
| [483/1930] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/code_printer.cpp.o | |
| In file included from /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.cpp:8: | |
| In file included from /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.hpp:17: | |
| In file included from /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/ext/fmt/include/fmt/format.h:41: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/memory:682: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/shared_ptr.h:25: | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:57:5: warning: delete called on 'nmodl::utils::Blame' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor] | |
| delete __ptr; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:318:7: note: in instantiation of member function 'std::default_delete<nmodl::utils::Blame>::operator()' requested here | |
| __ptr_.second()(__tmp); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:272:19: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::reset' requested here | |
| ~unique_ptr() { reset(); } | |
| ^ | |
| /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.cpp:115:26: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::~unique_ptr' requested here | |
| auto blame_printer = utils::make_blame(blame_line); | |
| ^ | |
| 1 warning generated. | |
| [484/1930] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/common_utils.cpp.o | |
| [485/1930] -- NMODL : GENERATING C (11) PARSER WITH BISON! -- | |
| ../../../../../external/nmodl/src/parser/c11.yy:52.1-35: warning: deprecated directive: '%define parser_class_name {CParser}', use '%define api.parser.class {CParser}' [-Wdeprecated] | |
| 52 | %define parser_class_name {CParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {CParser} | |
| ../../../../../external/nmodl/src/parser/c11.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
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| [489/1930] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/file_library.cpp.o | |
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| [491/1930] Generating ../../../../lib/nmodl/__init__.py | |
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| [498/1930] Generating ../../../../include/newton/newton.hpp | |
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| [500/1930] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/__/config/config.cpp.o | |
| [501/1930] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/table_data.cpp.o | |
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| [504/1930] -- NMODL : GENERATING NMODL_CORE PARSER WITH BISON! -- | |
| ../../../../../external/nmodl/src/parser/nmodl.yy:64.1-39: warning: deprecated directive: '%define parser_class_name {NmodlParser}', use '%define api.parser.class {NmodlParser}' [-Wdeprecated] | |
| 64 | %define parser_class_name {NmodlParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {NmodlParser} | |
| ../../../../../external/nmodl/src/parser/nmodl.yy: warning: 3 shift/reduce conflicts [-Wconflicts-sr] | |
| ../../../../../external/nmodl/src/parser/nmodl.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| ../../../../../external/nmodl/src/parser/nmodl.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
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| [530/1930] [FLEX][modlunitlexer] Building scanner with flex 2.6.4 | |
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| [534/1930] [BISON][nocmodlparser] Building parser with bison 3.8.2 | |
| ../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| [535/1930] [BISON][modlunitparser] Building parser with bison 3.8.2 | |
| [536/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnran123.cpp.o | |
| [537/1930] [BISON][ocparser] Building parser with bison 3.8.2 | |
| ../src/oc/parse.ypp: warning: 108 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| [538/1930] Linking CXX static library lib/libnrngnu.a | |
| [539/1930] [BISON][nocmodlparser] Building parser with bison 3.8.2 | |
| ../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| [540/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/consist.cpp.o | |
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| [546/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/model.cpp.o | |
| [547/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/list.cpp.o | |
| [548/1930] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/json_printer.cpp.o | |
| [549/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/passn.cpp.o | |
| [550/1930] cd /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h | |
| fatal: No names found, cannot describe anything. | |
| [551/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/symbol.cpp.o | |
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| [556/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/parse1.cpp.o | |
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| [565/1930] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/corenrn_parameters.cpp.o | |
| [566/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/io.cpp.o | |
| [567/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/noccout.cpp.o | |
| [568/1930] Linking CXX static library lib/libcoreneuron-core.a | |
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| [574/1930] Linking CXX static library lib/libutil.a | |
| [575/1930] -- NMODL : GENERATING NMODL LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/nmodl.ll:503: warning, -s option given but default rule can be matched | |
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| [577/1930] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! -- | |
| [578/1930] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/diffeq.ll:100: warning, -s option given but default rule can be matched | |
| [579/1930] -- NMODL : GENERATING C(11) LEXER WITH FLEX! -- | |
| [580/1930] -- NMODL : GENERATING UNIT LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched | |
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| [652/1930] Generating ../oc/hocusr.h | |
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| [654/1930] Generating ../../share/nrn/nrnmain.cpp | |
| [655/1930] Generating ../../include/nrnmpiuse.h | |
| [656/1930] Generating ../../include/nrncvode/nrnneosm.h | |
| [657/1930] Generating ../../include/nrnconf.h | |
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| [659/1930] Linking CXX shared library lib/librxdmath.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
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| [703/1930] Generating ../nrnoc/exp2syn.cpp | |
| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp | |
| Thread Safe | |
| [704/1930] Generating ../nrnoc/apcount.cpp | |
| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/apcount.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/expsyn.cpp | |
| Thread Safe | |
| [706/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_json.cpp.o | |
| [707/1930] Generating ../nrnoc/feature.cpp | |
| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/feature.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| [708/1930] Generating ../nrnoc/hh.cpp | |
| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/hh.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/intfire1.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/intfire2.cpp | |
| Thread Safe | |
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| [712/1930] Generating ../nrnoc/intfire4.cpp | |
| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/intfire4.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/oclmp.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/pattern.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| [715/1930] Generating ../nrnoc/netstim.cpp | |
| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/netstim.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/passive.cpp | |
| Thread Safe | |
| [717/1930] Generating ../nrnoc/svclmp.cpp | |
| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/svclmp.cpp | |
| Thread Safe | |
| [718/1930] Generating ../nrnoc/ppmark.cpp | |
| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/ppmark.cpp | |
| Thread Safe | |
| [719/1930] Generating ../nrnoc/syn.cpp | |
| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/syn.cpp | |
| Thread Safe | |
| [720/1930] Generating ../nrnoc/stim.cpp | |
| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/stim.cpp | |
| Thread Safe | |
| [721/1930] Generating ../nrnoc/vclmp.cpp | |
| Translating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/src/nrnoc/vclmp.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| Notice: LINEAR is not thread safe. | |
| [722/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_tap.cpp.o | |
| [723/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_teamcity.cpp.o | |
| [724/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_xml.cpp.o | |
| [725/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/axis.cpp.o | |
| [726/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/bndedval.cpp.o | |
| [727/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/apwindow.cpp.o | |
| [728/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_registry_hub.cpp.o | |
| [729/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_config.cpp.o | |
| [730/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_exception.cpp.o | |
| [731/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/interfaces/catch_interfaces_generatortracker.cpp.o | |
| [732/1930] Running nrnivmodl-core with internal mod files | |
| WARNING: No mod files found in '/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/bin', compiling default ones only! | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
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| [1093/1930] Generating coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py | |
| [1094/1930] Linking CXX executable bin/lfp_test_bin | |
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| [1138/1930] Generating nrniv_py3.10_python_check_sys_stdout.encoding/check_sys_attr.py | |
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| [1175/1930] Generating ../../compare_test_results.py | |
| [1176/1930] Generating ../tests/ringtest/reference_data/spk1.100ms.std.ref | |
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| [1180/1930] Building CXX object test/api/CMakeFiles/hh_sim_cpp.dir/hh_sim.cpp.o | |
| [1181/1930] Generating ../tests/testcorenrn/reference/out_gf.spk | |
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| [1190/1930] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/mechanism.cpp.o | |
| [1191/1930] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/container.cpp.o | |
| [1192/1930] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/node.cpp.o | |
| [1193/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocmatrix.cpp.o | |
| [1194/1930] Linking CXX shared library lib/libnrniv.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| [1195/1930] Generating inithoc.cpp | |
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| [1210/1930] Linking CXX executable bin/nrniv | |
| [1211/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadif.mod | |
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| [1219/1930] Linking CXX executable bin/test/nrn-benchmarks | |
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| [1265/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod | |
| [1266/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod | |
| [1267/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod | |
| [1268/1930] Running utility command for hoc_module | |
| INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_BUILD=0 | |
| INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk | |
| WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org | |
| WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0 | |
| INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'}) | |
| INFO:root:RX3D is DISABLED | |
| /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. | |
| !! | |
| ******************************************************************************** | |
| Requirements should be satisfied by a PEP 517 installer. | |
| If you are using pip, you can try `pip install --use-pep517`. | |
| ******************************************************************************** | |
| !! | |
| dist.fetch_build_eggs(dist.setup_requires) | |
| WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' | |
| Traceback (most recent call last): | |
| File "/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject | |
| section = defn.get("tool", {})[tool_name] | |
| KeyError: 'setuptools_scm' | |
| /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:167: UserWarning: "/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn" is shallow and may cause errors | |
| warnings.warn(f'"{wd.path}" is shallow and may cause errors') | |
| INFO:root:running build | |
| INFO:root:running build_py | |
| INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:creating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:creating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:creating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/coreneuron_available.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:creating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:creating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
| INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
| INFO:root:creating /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:running build_ext | |
| INFO:root:==> Building Python extensions | |
| INFO:root:building 'neuron.hoc' extension | |
| INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -DCORENRN_BUILD=0=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17 | |
| INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../ | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| INFO:root:running build_scripts | |
| INFO:root:creating build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10 | |
| INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755 | |
| [1269/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.inc | |
| [1270/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.mod | |
| [1271/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial_pp.mod | |
| [1272/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/bacur.mod | |
| [1273/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/banocur.mod | |
| [1274/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/fornetcon.mod | |
| [1275/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/green.mod | |
| [1276/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/invlfire.mod | |
| [1277/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/natrans.mod | |
| [1278/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/netmove.mod | |
| [1279/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/noisychan.mod | |
| [1280/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/red.mod | |
| [1281/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/sample.mod | |
| [1282/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/unitstest.mod | |
| [1283/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/version_macros.mod | |
| [1284/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange.mod | |
| [1285/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange2.mod | |
| [1286/1930] Building special[-core] for test group datahandle | |
| /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453 | |
| cfiles = | |
| Mod files: "./opaque_token.mod" "./ptr.mod" | |
| MODOBJS= ./opaque_token.o ./ptr.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././opaque_token.mod | |
| -> NMODL .././ptr.mod | |
| Translating opaque_token.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp | |
| Translating ptr.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| -> Compiling /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1287/1930] Generating datahandle/datahandle_tests/test/datahandle/test_1.py | |
| [1288/1930] Generating datahandle/datahandle_tests/test/datahandle/test_token.py | |
| [1289/1930] Linking CXX executable bin/test/hh_sim_cpp | |
| [1290/1930] Linking CXX executable bin/test/netcon_cpp | |
| [1291/1930] Linking CXX executable bin/test/sections_c | |
| [1292/1930] Linking CXX executable bin/test/vclamp_cpp | |
| [1293/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod | |
| [1294/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod | |
| [1295/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod | |
| [1296/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod | |
| [1297/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod | |
| [1298/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod | |
| [1299/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod | |
| [1300/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod | |
| [1301/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod | |
| [1302/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod | |
| [1303/1930] Building special[-core] for test group coverage_tests | |
| /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51 | |
| cfiles = | |
| Mod files: "./ppxsrc.mod" | |
| MODOBJS= ./ppxsrc.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././ppxsrc.mod | |
| Translating ppxsrc.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1304/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod | |
| [1305/1930] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json | |
| [1306/1930] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py | |
| [1307/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod | |
| [1308/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod | |
| [1309/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod | |
| [1310/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod | |
| [1311/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod | |
| [1312/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod | |
| [1313/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod | |
| [1314/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod | |
| [1315/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod | |
| [1316/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod | |
| [1317/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod | |
| [1318/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod | |
| [1319/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| [1320/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod | |
| [1321/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod | |
| [1322/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod | |
| [1323/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod | |
| [1324/1930] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod | |
| [1325/1930] Building special[-core] for test group pytest | |
| /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c | |
| cfiles = | |
| Mod files: "./mcna.mod" | |
| MODOBJS= ./mcna.o | |
| -> NMODL .././mcna.mod | |
| -> Compiling mod_func.cpp | |
| Translating mcna.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1326/1930] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json | |
| [1327/1930] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py | |
| [1328/1930] Generating ../../nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/halfgap.mod | |
| [1329/1930] Building special[-core] for test group parallel | |
| /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100 | |
| cfiles = | |
| Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
| MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././name_clashes.mod | |
| -> NMODL .././follower.mod | |
| -> NMODL .././gap.mod | |
| Translating name_clashes.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp | |
| Thread Safe | |
| -> NMODL .././unitstest.mod | |
| Translating follower.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp | |
| Thread Safe | |
| -> NMODL .././version_macros.mod | |
| Translating gap.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp | |
| Translating unitstest.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp | |
| Translating version_macros.mod into /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P217459/J1322178/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1330/1930] Generating parallel/subworld/test/parallel_tests/test_subworld.py | |
| [1331/1930] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py | |
| [1332/1930] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py | |
| [1333/1930] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py | |
| [1334/1930] Generating parallel/bas/test/parallel_tests/test_bas.py | |
| [1335/1930] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py | |
| [1336/1930] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json | |
| [1337/1930] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py | |
| [1338/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod | |
| [1339/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod | |
| [1340/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod | |
| [1341/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod | |
| [1342/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod | |
| [1343/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64 |
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