Created
June 6, 2023 10:30
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/129101 (:white_check_mark:) running on GitHub PR neuronsimulator/nrn#2372.
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1686043389:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1686043389:resolve_secrets [0Ksection_start:1686043389:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3680061021, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nrn | |
Pipeline ID 129101, build ref 6a99d78108c74ebbc28ebc88ac0e264b53401fbd, job ID 746114 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J746114_PROD_P2160_CP0_C0 | |
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 1549485 | |
job state: PD | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J746114_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101 --time=2:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101 --ntasks=2 --jobid=1549485 --cpus-per-task=8 --mem=76G | |
section_end:1686043391:prepare_executor [0Ksection_start:1686043391:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r4i6n35 via bbpv1.epfl.ch... | |
section_end:1686043397:prepare_script [0Ksection_start:1686043397:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1686043398:get_sources [0Ksection_start:1686043398:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
Using git from spack modules | |
[32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=54097 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected[0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1686043405:restore_cache [0Ksection_start:1686043405:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for build:nmodl (746113)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=55012 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=746113 responseStatus[0;m=200 OK token[0;m=64_JczuR | |
section_end:1686043407:download_artifacts [0Ksection_start:1686043407:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
--- config: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746114/spack-config/config.yaml:2 build_stage: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746114/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746114/spack-build | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746114/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746114/spack-source-cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/config.yaml:2 ccache: True | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:18 extensions: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:146 locks: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:211 bind: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
_builtin debug: False | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
--- concretizer: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746114/spack-config/concretizer.yaml:2 reuse: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101/J746114_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/56d5ty5vsaueysdkxgptaa5f2vvjqjwx | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ module load unstable ccache[0;m | |
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101 | |
[32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ ccache --zero-stats[0;m | |
Statistics zeroed | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549485/ccache | |
Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549485/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Tue Jun 6 11:23:58 2023 | |
Hits: 0 / 0 | |
Direct: 0 / 0 | |
Preprocessed: 0 / 0 | |
Misses: 0 | |
Direct: 0 | |
Preprocessed: 0 | |
Primary storage: | |
Hits: 0 / 0 | |
Misses: 0 | |
Cache size (GB): 0.46 / 0.51 (89.46 %) | |
Files: 25676 | |
[32;1m$ fi[0;m | |
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
Input spec | |
-------------------------------- | |
- neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[+] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
Concretized | |
-------------------------------- | |
- ftmn32b neuron@develop%oneapi@2022.2.1~caliper~codegenopt+coreneuron~gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] 7pokw4h ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
- dvav7kc ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] einzmbz ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake | |
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[+] 56d5ty5 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[+] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] hexz5ps ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
[^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[32;1m$ set -o pipefail[0;m | |
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101, but it is owned by 0 | |
==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
==> python@3.10.8 : has external module in ['python/3.10.8'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/nmodl-develop-56d5ty | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml | |
==> Installing neuron-develop-ftmn32b5masv4q7gq6xgczuoqw6k6jlp | |
==> No binary for neuron-develop-ftmn32b5masv4q7gq6xgczuoqw6k6jlp found: installing from source | |
==> No patches needed for neuron | |
==> neuron: Executing phase: 'cmake' | |
==> neuron: Executing phase: 'build' | |
==> neuron: Executing phase: 'install' | |
==> neuron: Successfully installed neuron-develop-ftmn32b5masv4q7gq6xgczuoqw6k6jlp | |
Fetch: 44.92s. Build: 27m 17.11s. Total: 28m 2.03s. | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_oneapi-2022.2.1-skylake/neuron-develop-ftmn32 | |
[32;1m$ set +o pipefail[0;m | |
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
Determined the installed hash to be ftmn32b5masv4q7gq6xgczuoqw6k6jlp | |
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ ccache --cleanup[0;m | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549485/ccache | |
Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549485/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Tue Jun 6 11:54:19 2023 | |
Hits: 849 / 950 (89.37 %) | |
Direct: 320 / 959 (33.37 %) | |
Preprocessed: 529 / 633 (83.57 %) | |
Misses: 101 | |
Direct: 639 | |
Preprocessed: 104 | |
Uncacheable: 1031 | |
Primary storage: | |
Hits: 1516 / 1912 (79.29 %) | |
Misses: 396 | |
Cache size (GB): 0.46 / 0.51 (90.04 %) | |
Files: 26060 | |
Uncacheable: | |
Autoconf compile/link: 7 | |
Called for linking: 1006 | |
Called for preprocessing: 1 | |
Compilation failed: 3 | |
No input file: 8 | |
Preprocessing failed: 6 | |
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
Autoloading python/3.10.8 | |
Autoloading intel-oneapi-mkl/2021.4.0 | |
Autoloading hpe-mpi/2.25.hmpt | |
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
section_end:1686045273:step_script [0Ksection_start:1686045273:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mCreating cache build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=97293 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ccache.tar: found 1 matching files and directories[0;m | |
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected[0;m | |
[32;1mCreated cache[0;m | |
section_end:1686045291:archive_cache [0Ksection_start:1686045291:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=97461 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
initial_environment.env: found 1 matching files and directories[0;m | |
spack-build-env.txt: found 1 matching files and directories[0;m | |
spack-build-out.txt: found 1 matching files and directories[0;m | |
spack-configure-args.txt: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=746114 responseStatus[0;m=201 Created token[0;m=64_JczuR | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=97501 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=746114 responseStatus[0;m=201 Created token[0;m=64_JczuR | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=97544 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=746114 responseStatus[0;m=201 Created token[0;m=64_JczuR | |
section_end:1686045293:upload_artifacts_on_success [0Ksection_start:1686045293:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1686045294:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1686043390:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1686043390:resolve_secrets [0Ksection_start:1686043390:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3921961373, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nrn | |
Pipeline ID 129101, build ref 6a99d78108c74ebbc28ebc88ac0e264b53401fbd, job ID 746116 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J746116_PROD_P2160_CP2_C4 | |
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 1549487 | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J746116_PROD_P2160_CP2_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101 --time=2:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101 --ntasks=2 --jobid=1549487 --cpus-per-task=8 --mem=76G | |
section_end:1686043392:prepare_executor [0Ksection_start:1686043392:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r4i6n35 via bbpv1.epfl.ch... | |
section_end:1686043399:prepare_script [0Ksection_start:1686043399:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1686043400:get_sources [0Ksection_start:1686043400:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
Using git from spack modules | |
[32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=54355 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
cache.zip is up to date [0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1686043406:restore_cache [0Ksection_start:1686043406:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for build:nmodl (746113)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=55154 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=746113 responseStatus[0;m=200 OK token[0;m=64_-Nmgu | |
section_end:1686043407:download_artifacts [0Ksection_start:1686043407:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
--- config: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746116/spack-config/config.yaml:2 build_stage: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746116/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746116/spack-build | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746116/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746116/spack-source-cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/config.yaml:2 ccache: True | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:18 extensions: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:146 locks: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:211 bind: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
_builtin debug: False | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
--- concretizer: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746116/spack-config/concretizer.yaml:2 reuse: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101/J746116_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/56d5ty5vsaueysdkxgptaa5f2vvjqjwx | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ module load unstable ccache[0;m | |
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101 | |
[32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ ccache --zero-stats[0;m | |
Statistics zeroed | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549487/ccache | |
Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549487/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Tue Jun 6 11:23:59 2023 | |
Hits: 0 / 0 | |
Direct: 0 / 0 | |
Preprocessed: 0 / 0 | |
Misses: 0 | |
Direct: 0 | |
Preprocessed: 0 | |
Primary storage: | |
Hits: 0 / 0 | |
Misses: 0 | |
Cache size (GB): 0.47 / 0.51 (92.41 %) | |
Files: 26571 | |
[32;1m$ fi[0;m | |
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
Input spec | |
-------------------------------- | |
- neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[+] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
Concretized | |
-------------------------------- | |
- mf4h2yt neuron@develop%nvhpc@23.1~caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
[^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] 7pokw4h ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
- dvav7kc ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] einzmbz ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake | |
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[+] 56d5ty5 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[+] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] hexz5ps ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
[^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[32;1m$ set -o pipefail[0;m | |
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t) | |
==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
==> python@3.10.8 : has external module in ['python/3.10.8'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101, but it is owned by 0 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/nmodl-develop-56d5ty | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml | |
==> Installing neuron-develop-mf4h2ytll62bfds5x5la5wlbaxp4xemk | |
==> No binary for neuron-develop-mf4h2ytll62bfds5x5la5wlbaxp4xemk found: installing from source | |
==> No patches needed for neuron | |
==> neuron: Executing phase: 'cmake' | |
==> neuron: Executing phase: 'build' | |
==> neuron: Executing phase: 'install' | |
==> neuron: Successfully installed neuron-develop-mf4h2ytll62bfds5x5la5wlbaxp4xemk | |
Fetch: 32.37s. Build: 40m 59.11s. Total: 41m 31.48s. | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_nvhpc-23.1-skylake/neuron-develop-mf4h2y | |
[32;1m$ set +o pipefail[0;m | |
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
Determined the installed hash to be mf4h2ytll62bfds5x5la5wlbaxp4xemk | |
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ ccache --cleanup[0;m | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549487/ccache | |
Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549487/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Tue Jun 6 12:07:34 2023 | |
Hits: 849 / 987 (86.02 %) | |
Direct: 320 / 958 (33.40 %) | |
Preprocessed: 529 / 632 (83.70 %) | |
Misses: 138 | |
Direct: 638 | |
Preprocessed: 103 | |
Uncacheable: 142 | |
Primary storage: | |
Hits: 1516 / 1910 (79.37 %) | |
Misses: 394 | |
Cache size (GB): 0.47 / 0.51 (92.01 %) | |
Files: 26665 | |
Cleanups: 4 | |
Uncacheable: | |
Autoconf compile/link: 7 | |
Called for linking: 116 | |
Called for preprocessing: 2 | |
Compilation failed: 3 | |
No input file: 8 | |
Preprocessing failed: 6 | |
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
Autoloading python/3.10.8 | |
Autoloading intel-oneapi-mkl/2021.4.0 | |
Autoloading hpe-mpi/2.25.hmpt | |
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
section_end:1686046067:step_script [0Ksection_start:1686046067:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mCreating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=118976 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ccache.tar: found 1 matching files and directories[0;m | |
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected[0;m | |
[32;1mCreated cache[0;m | |
section_end:1686046084:archive_cache [0Ksection_start:1686046084:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=119082 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
initial_environment.env: found 1 matching files and directories[0;m | |
spack-build-env.txt: found 1 matching files and directories[0;m | |
spack-build-out.txt: found 1 matching files and directories[0;m | |
spack-configure-args.txt: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=746116 responseStatus[0;m=201 Created token[0;m=64_-Nmgu | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=119125 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=746116 responseStatus[0;m=201 Created token[0;m=64_-Nmgu | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=119168 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=746116 responseStatus[0;m=201 Created token[0;m=64_-Nmgu | |
section_end:1686046086:upload_artifacts_on_success [0Ksection_start:1686046086:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1686046087:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1686043391:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1686043391:resolve_secrets [0Ksection_start:1686043391:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3461130221, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nrn | |
Pipeline ID 129101, build ref 6a99d78108c74ebbc28ebc88ac0e264b53401fbd, job ID 746118 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J746118_PROD_P2160_CP4_C6 | |
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 1549489 | |
job state: PD | |
job state: PD | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J746118_PROD_P2160_CP4_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101 --time=2:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101 --ntasks=2 --jobid=1549489 --cpus-per-task=8 --mem=76G | |
section_end:1686043395:prepare_executor [0Ksection_start:1686043395:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r4i6n12 via bbpv1.epfl.ch... | |
section_end:1686043400:prepare_script [0Ksection_start:1686043400:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1686043401:get_sources [0Ksection_start:1686043401:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
Using git from spack modules | |
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=190311 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
cache.zip is up to date [0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1686043407:restore_cache [0Ksection_start:1686043407:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for build:nmodl (746113)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=190428 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=746113 responseStatus[0;m=200 OK token[0;m=64_L6xqx | |
section_end:1686043408:download_artifacts [0Ksection_start:1686043408:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
--- config: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746118/spack-config/config.yaml:2 build_stage: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746118/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746118/spack-build | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746118/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746118/spack-source-cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/config.yaml:2 ccache: True | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:18 extensions: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:146 locks: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:211 bind: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
_builtin debug: False | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
--- concretizer: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746118/spack-config/concretizer.yaml:2 reuse: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101/J746118_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/56d5ty5vsaueysdkxgptaa5f2vvjqjwx | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ module load unstable ccache[0;m | |
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101 | |
[32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ ccache --zero-stats[0;m | |
Statistics zeroed | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549489/ccache | |
Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549489/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Tue Jun 6 11:23:57 2023 | |
Hits: 0 / 0 | |
Direct: 0 / 0 | |
Preprocessed: 0 / 0 | |
Misses: 0 | |
Direct: 0 | |
Preprocessed: 0 | |
Primary storage: | |
Hits: 0 / 0 | |
Misses: 0 | |
Cache size (GB): 0.47 / 0.51 (91.52 %) | |
Files: 26769 | |
[32;1m$ fi[0;m | |
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
Input spec | |
-------------------------------- | |
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
- ^caliper+cuda cuda_arch=70 | |
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[+] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
Concretized | |
-------------------------------- | |
- nfvf62i neuron@develop%nvhpc@23.1+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
[^] c3723hn ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
[^] pcfmpqe ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 7yt5klx ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake | |
[^] zttduab ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake | |
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
[^] ja6blio ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
[^] 3gsobub ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
[^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] 7pokw4h ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
- dvav7kc ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] einzmbz ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake | |
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[+] 56d5ty5 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[+] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] hexz5ps ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
[^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[32;1m$ set -o pipefail[0;m | |
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc) | |
==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
[+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu | |
==> python@3.10.8 : has external module in ['python/3.10.8'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-pcfmpq | |
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101, but it is owned by 0 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-c3723h | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/nmodl-develop-56d5ty | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k | |
==> Installing neuron-develop-nfvf62i7ncvv5mmhnir3i3fohilvalgr | |
==> No binary for neuron-develop-nfvf62i7ncvv5mmhnir3i3fohilvalgr found: installing from source | |
==> No patches needed for neuron | |
==> neuron: Executing phase: 'cmake' | |
==> neuron: Executing phase: 'build' | |
==> neuron: Executing phase: 'install' | |
==> neuron: Successfully installed neuron-develop-nfvf62i7ncvv5mmhnir3i3fohilvalgr | |
Fetch: 22.93s. Build: 31m 15.00s. Total: 31m 37.93s. | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_nvhpc-23.1-skylake/neuron-develop-nfvf62 | |
[32;1m$ set +o pipefail[0;m | |
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
Determined the installed hash to be nfvf62i7ncvv5mmhnir3i3fohilvalgr | |
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ ccache --cleanup[0;m | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549489/ccache | |
Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549489/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Tue Jun 6 11:57:40 2023 | |
Hits: 849 / 997 (85.16 %) | |
Direct: 320 / 960 (33.33 %) | |
Preprocessed: 529 / 634 (83.44 %) | |
Misses: 148 | |
Direct: 640 | |
Preprocessed: 105 | |
Uncacheable: 144 | |
Primary storage: | |
Hits: 1516 / 1914 (79.21 %) | |
Misses: 398 | |
Cache size (GB): 0.47 / 0.51 (92.01 %) | |
Files: 27190 | |
Cleanups: 1 | |
Uncacheable: | |
Autoconf compile/link: 7 | |
Called for linking: 118 | |
Called for preprocessing: 2 | |
Compilation failed: 3 | |
No input file: 8 | |
Preprocessing failed: 6 | |
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
Autoloading python/3.10.8 | |
Autoloading intel-oneapi-mkl/2021.4.0 | |
Autoloading hpe-mpi/2.25.hmpt | |
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
section_end:1686045473:step_script [0Ksection_start:1686045473:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=241231 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ccache.tar: found 1 matching files and directories[0;m | |
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected[0;m | |
[32;1mCreated cache[0;m | |
section_end:1686045491:archive_cache [0Ksection_start:1686045491:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=242105 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
initial_environment.env: found 1 matching files and directories[0;m | |
spack-build-env.txt: found 1 matching files and directories[0;m | |
spack-build-out.txt: found 1 matching files and directories[0;m | |
spack-configure-args.txt: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=746118 responseStatus[0;m=201 Created token[0;m=64_L6xqx | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=242143 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=746118 responseStatus[0;m=201 Created token[0;m=64_L6xqx | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=242185 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=746118 responseStatus[0;m=201 Created token[0;m=64_L6xqx | |
section_end:1686045493:upload_artifacts_on_success [0Ksection_start:1686045493:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1686045494:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1686043392:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1686043392:resolve_secrets [0Ksection_start:1686043392:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1246970943, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nrn | |
Pipeline ID 129101, build ref 6a99d78108c74ebbc28ebc88ac0e264b53401fbd, job ID 746119 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J746119_PROD_P2160_CP5_C7 | |
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 1549490 | |
job state: PD | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J746119_PROD_P2160_CP5_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101 --time=2:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101 --ntasks=2 --jobid=1549490 --cpus-per-task=8 --mem=76G | |
section_end:1686043394:prepare_executor [0Ksection_start:1686043394:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r4i6n12 via bbpv1.epfl.ch... | |
section_end:1686043400:prepare_script [0Ksection_start:1686043400:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1686043401:get_sources [0Ksection_start:1686043401:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
Using git from spack modules | |
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=190253 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
cache.zip is up to date [0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1686043407:restore_cache [0Ksection_start:1686043407:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for build:nmodl (746113)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=190498 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=746113 responseStatus[0;m=200 OK token[0;m=64_7KP6W | |
section_end:1686043408:download_artifacts [0Ksection_start:1686043408:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
--- config: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746119/spack-config/config.yaml:2 build_stage: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746119/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746119/spack-build | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746119/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746119/spack-source-cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/config.yaml:2 ccache: True | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:18 extensions: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:146 locks: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:211 bind: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
_builtin debug: False | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
--- concretizer: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746119/spack-config/concretizer.yaml:2 reuse: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101/J746119_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/56d5ty5vsaueysdkxgptaa5f2vvjqjwx | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ module load unstable ccache[0;m | |
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101 | |
[32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ ccache --zero-stats[0;m | |
Statistics zeroed | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549490/ccache | |
Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549490/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Tue Jun 6 11:23:57 2023 | |
Hits: 0 / 0 | |
Direct: 0 / 0 | |
Preprocessed: 0 / 0 | |
Misses: 0 | |
Direct: 0 | |
Preprocessed: 0 | |
Primary storage: | |
Hits: 0 / 0 | |
Misses: 0 | |
Cache size (GB): 0.47 / 0.51 (91.31 %) | |
Files: 25870 | |
[32;1m$ fi[0;m | |
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
Input spec | |
-------------------------------- | |
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
- ^caliper+cuda cuda_arch=70 | |
[+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[+] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
Concretized | |
-------------------------------- | |
- qucf6gb neuron@develop%nvhpc@23.1+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
[^] c3723hn ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
[^] pcfmpqe ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 7yt5klx ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake | |
[^] zttduab ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake | |
[^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
[^] ja6blio ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
[^] 3gsobub ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
[^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
[^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
[^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
[^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
[^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
[^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
[^] 7pokw4h ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
- dvav7kc ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] einzmbz ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake | |
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[+] 56d5ty5 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[+] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] hexz5ps ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
[^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
[^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[32;1m$ set -o pipefail[0;m | |
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc) | |
==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
[+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu | |
==> python@3.10.8 : has external module in ['python/3.10.8'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-pcfmpq | |
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101, but it is owned by 0 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-c3723h | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/nmodl-develop-56d5ty | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k | |
==> Installing neuron-develop-qucf6gb3sfourm6mbxaxfe6xup4xwqwb | |
==> No binary for neuron-develop-qucf6gb3sfourm6mbxaxfe6xup4xwqwb found: installing from source | |
==> No patches needed for neuron | |
==> neuron: Executing phase: 'cmake' | |
==> neuron: Executing phase: 'build' | |
==> neuron: Executing phase: 'install' | |
==> neuron: Successfully installed neuron-develop-qucf6gb3sfourm6mbxaxfe6xup4xwqwb | |
Fetch: 22.24s. Build: 31m 24.11s. Total: 31m 46.36s. | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_nvhpc-23.1-skylake/neuron-develop-qucf6g | |
[32;1m$ set +o pipefail[0;m | |
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
Determined the installed hash to be qucf6gb3sfourm6mbxaxfe6xup4xwqwb | |
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ ccache --cleanup[0;m | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549490/ccache | |
Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549490/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Tue Jun 6 11:57:48 2023 | |
Hits: 849 / 997 (85.16 %) | |
Direct: 320 / 960 (33.33 %) | |
Preprocessed: 529 / 634 (83.44 %) | |
Misses: 148 | |
Direct: 640 | |
Preprocessed: 105 | |
Uncacheable: 144 | |
Primary storage: | |
Hits: 1515 / 1914 (79.15 %) | |
Misses: 399 | |
Cache size (GB): 0.47 / 0.51 (91.96 %) | |
Files: 26313 | |
Uncacheable: | |
Autoconf compile/link: 7 | |
Called for linking: 118 | |
Called for preprocessing: 2 | |
Compilation failed: 3 | |
No input file: 8 | |
Preprocessing failed: 6 | |
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
Autoloading python/3.10.8 | |
Autoloading intel-oneapi-mkl/2021.4.0 | |
Autoloading hpe-mpi/2.25.hmpt | |
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
section_end:1686045480:step_script [0Ksection_start:1686045480:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=241593 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ccache.tar: found 1 matching files and directories[0;m | |
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected[0;m | |
[32;1mCreated cache[0;m | |
section_end:1686045499:archive_cache [0Ksection_start:1686045499:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=243141 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
initial_environment.env: found 1 matching files and directories[0;m | |
spack-build-env.txt: found 1 matching files and directories[0;m | |
spack-build-out.txt: found 1 matching files and directories[0;m | |
spack-configure-args.txt: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=746119 responseStatus[0;m=201 Created token[0;m=64_7KP6W | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=243183 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=746119 responseStatus[0;m=201 Created token[0;m=64_7KP6W | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=243224 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=746119 responseStatus[0;m=201 Created token[0;m=64_7KP6W | |
section_end:1686045501:upload_artifacts_on_success [0Ksection_start:1686045501:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1686045502:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1686043069:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1686043069:resolve_secrets [0Ksection_start:1686043069:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1241478683, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nrn | |
Pipeline ID 129101, build ref 6a99d78108c74ebbc28ebc88ac0e264b53401fbd, job ID 746113 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J746113_PROD_P2160_CP0_C0 | |
Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 1549480 | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J746113_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101 --time=1:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101 --ntasks=2 --jobid=1549480 --cpus-per-task=8 --mem=76G | |
section_end:1686043070:prepare_executor [0Ksection_start:1686043070:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r4i6n35 via bbpv1.epfl.ch... | |
section_end:1686043074:prepare_script [0Ksection_start:1686043074:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1686043075:get_sources [0Ksection_start:1686043075:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
Using git from spack modules | |
[32;1mChecking cache for build:nmodl-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=46484 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
cache.zip is up to date [0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1686043081:restore_cache [0Ksection_start:1686043081:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for spack_setup (746111)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=47130 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=746111 responseStatus[0;m=200 OK token[0;m=64_VJu8X | |
section_end:1686043083:download_artifacts [0Ksection_start:1686043083:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
--- config: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746113/spack-config/config.yaml:2 build_stage: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746113/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746113/spack-build | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746113/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746113/spack-source-cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/config.yaml:2 ccache: True | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:18 extensions: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:146 locks: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:211 bind: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
_builtin debug: False | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
--- concretizer: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746113/spack-config/concretizer.yaml:2 reuse: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/J746111/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101/J746113_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
Preparing to install nmodl%gcc ~legacy-unit | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ module load unstable ccache[0;m | |
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101 | |
[32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ ccache --zero-stats[0;m | |
Statistics zeroed | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549480/ccache | |
Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549480/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Tue Jun 6 11:18:08 2023 | |
Hits: 0 / 0 | |
Direct: 0 / 0 | |
Preprocessed: 0 / 0 | |
Misses: 0 | |
Direct: 0 | |
Preprocessed: 0 | |
Primary storage: | |
Hits: 0 / 0 | |
Misses: 0 | |
Cache size (GB): 0.44 / 0.51 (86.60 %) | |
Files: 1159 | |
[32;1m$ fi[0;m | |
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
Input spec | |
-------------------------------- | |
- nmodl%gcc~legacy-unit | |
Concretized | |
-------------------------------- | |
- 56d5ty5 nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
- 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
[^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
[^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
[^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
[^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] d7dkmvv ^py-flit-core@3.7.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] zbqiukk ^py-setuptools-scm@7.0.5%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
[^] ihcuyox ^py-typing-extensions@4.3.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
[^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
[32;1m$ set -o pipefail[0;m | |
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
==> python@3.10.8 : has external module in ['python/3.10.8'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
==> Installing catch2-3.0.1-7v6k26xsg7vuip4riuwzc7k4efieigu2 | |
==> No binary for catch2-3.0.1-7v6k26xsg7vuip4riuwzc7k4efieigu2 found: installing from source | |
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101, but it is owned by 0 | |
==> Fetching https://mirror.spack.io/_source-cache/archive/8c/8c4173c68ae7da1b5b505194a0c2d6f1b2aef4ec1e3e7463bde451f26bbaf4e7.tar.gz | |
==> No patches needed for catch2 | |
==> catch2: Executing phase: 'cmake' | |
==> catch2: Executing phase: 'build' | |
==> catch2: Executing phase: 'install' | |
==> catch2: Successfully installed catch2-3.0.1-7v6k26xsg7vuip4riuwzc7k4efieigu2 | |
Fetch: 2.11s. Build: 2.94s. Total: 5.05s. | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-flit-core-3.7.1-d7dkmv | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-typing-extensions-4.3.0-ihcuyo | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-scm-7.0.5-zbqiuk | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
==> Installing nmodl-develop-56d5ty5vsaueysdkxgptaa5f2vvjqjwx | |
==> No binary for nmodl-develop-56d5ty5vsaueysdkxgptaa5f2vvjqjwx found: installing from source | |
==> No patches needed for nmodl | |
==> nmodl: Executing phase: 'cmake' | |
==> nmodl: Executing phase: 'build' | |
==> nmodl: Executing phase: 'install' | |
==> nmodl: Successfully installed nmodl-develop-56d5ty5vsaueysdkxgptaa5f2vvjqjwx | |
Fetch: 1m 20.48s. Build: 1m 49.07s. Total: 3m 9.56s. | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P129101/software/install_gcc-12.2.0-skylake/nmodl-develop-56d5ty | |
[32;1m$ set +o pipefail[0;m | |
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
Determined the installed hash to be 56d5ty5vsaueysdkxgptaa5f2vvjqjwx | |
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ ccache --cleanup[0;m | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Summary: | |
Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549480/ccache | |
Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/1549480/ccache/ccache.conf | |
Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
Stats updated: Tue Jun 6 11:22:43 2023 | |
Hits: 206 / 208 (99.04 %) | |
Direct: 104 / 208 (50.00 %) | |
Preprocessed: 102 / 104 (98.08 %) | |
Misses: 2 | |
Direct: 104 | |
Preprocessed: 2 | |
Uncacheable: 27 | |
Primary storage: | |
Hits: 310 / 416 (74.52 %) | |
Misses: 106 | |
Cache size (GB): 0.45 / 0.51 (87.05 %) | |
Files: 1163 | |
Uncacheable: | |
Called for linking: 25 | |
No input file: 2 | |
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
Autoloading python/3.10.8 | |
Autoloading intel-oneapi-mkl/2021.4.0 | |
Autoloading hpe-mpi/2.25.hmpt | |
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
section_end:1686043365:step_script [0Ksection_start:1686043365:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mCreating cache build:nmodl-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52294 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ccache.tar: found 1 matching files and directories[0;m | |
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m | |
[32;1mCreated cache[0;m | |
section_end:1686043384:archive_cache [0Ksection_start:1686043384:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52418 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
initial_environment.env: found 1 matching files and directories[0;m | |
spack-build-env.txt: found 1 matching files and directories[0;m | |
spack-build-out.txt: found 1 matching files and directories[0;m | |
spack-configure-args.txt: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=746113 responseStatus[0;m=201 Created token[0;m=64_VJu8X | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52459 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=746113 responseStatus[0;m=201 Created token[0;m=64_VJu8X | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52502 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=746113 responseStatus[0;m=201 Created token[0;m=64_VJu8X | |
section_end:1686043386:upload_artifacts_on_success [0Ksection_start:1686043386:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1686043387:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m | |
[0K on macos-arm64 vGzz-bdp[0;m | |
section_start:1686041854:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1686041854:resolve_secrets [0Ksection_start:1686041854:prepare_executor [0K[0K[36;1mPreparing the "shell" executor[0;m[0;m | |
[0KUsing Shell executor...[0;m | |
section_end:1686041854:prepare_executor [0Ksection_start:1686041854:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Running on bbpmacglr01.bbp.epfl.ch... | |
section_end:1686041854:prepare_script [0Ksection_start:1686041854:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
[32;1mFetching changes with git depth set to 20...[0;m | |
Initialized empty Git repository in /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/.git/ | |
[32;1mCreated fresh repository.[0;m | |
[32;1mChecking out 6a99d781 as olupton/debian...[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1686041856:get_sources [0Ksection_start:1686041856:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
[32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-olupton/debian-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=6517 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1686041856:restore_cache [0Ksection_start:1686041856:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ real_python=$(python3 resolve_shim.py)[0;m | |
[32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m | |
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.8/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python | |
[32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m | |
[32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m | |
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (22.2.2) | |
Collecting pip | |
Using cached pip-23.1.2-py3-none-any.whl (2.1 MB) | |
Collecting wheel | |
Using cached wheel-0.40.0-py3-none-any.whl (64 kB) | |
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (65.4.1) | |
Collecting setuptools | |
Using cached setuptools-67.8.0-py3-none-any.whl (1.1 MB) | |
Collecting setuptools_scm | |
Using cached setuptools_scm-7.1.0-py3-none-any.whl (43 kB) | |
Collecting scikit-build | |
Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB) | |
Collecting matplotlib | |
Using cached matplotlib-3.7.1-cp310-cp310-macosx_11_0_arm64.whl (7.3 MB) | |
Collecting bokeh<3 | |
Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB) | |
Collecting ipython | |
Using cached ipython-8.14.0-py3-none-any.whl (798 kB) | |
Collecting cython | |
Using cached Cython-0.29.35-py2.py3-none-any.whl (988 kB) | |
Collecting packaging | |
Using cached packaging-23.1-py3-none-any.whl (48 kB) | |
Collecting pytest | |
Using cached pytest-7.3.1-py3-none-any.whl (320 kB) | |
Collecting pytest-cov | |
Using cached pytest_cov-4.1.0-py3-none-any.whl (21 kB) | |
Collecting mpi4py | |
Using cached mpi4py-3.1.4-cp310-cp310-macosx_12_0_arm64.whl | |
Collecting numpy | |
Using cached numpy-1.24.3-cp310-cp310-macosx_11_0_arm64.whl (13.9 MB) | |
Collecting find_libpython | |
Using cached find_libpython-0.3.0-py3-none-any.whl (8.5 kB) | |
Collecting tomli>=1.0.0 | |
Using cached tomli-2.0.1-py3-none-any.whl (12 kB) | |
Collecting typing-extensions | |
Using cached typing_extensions-4.6.3-py3-none-any.whl (31 kB) | |
Collecting distro | |
Using cached distro-1.8.0-py3-none-any.whl (20 kB) | |
Collecting fonttools>=4.22.0 | |
Using cached fonttools-4.39.4-py3-none-any.whl (1.0 MB) | |
Collecting pyparsing>=2.3.1 | |
Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB) | |
Collecting python-dateutil>=2.7 | |
Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) | |
Collecting contourpy>=1.0.1 | |
Using cached contourpy-1.0.7-cp310-cp310-macosx_11_0_arm64.whl (229 kB) | |
Collecting pillow>=6.2.0 | |
Using cached Pillow-9.5.0-cp310-cp310-macosx_11_0_arm64.whl (3.1 MB) | |
Collecting kiwisolver>=1.0.1 | |
Using cached kiwisolver-1.4.4-cp310-cp310-macosx_11_0_arm64.whl (63 kB) | |
Collecting cycler>=0.10 | |
Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB) | |
Collecting Jinja2>=2.9 | |
Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB) | |
Collecting PyYAML>=3.10 | |
Using cached PyYAML-6.0-cp310-cp310-macosx_11_0_arm64.whl (173 kB) | |
Collecting tornado>=5.1 | |
Using cached tornado-6.3.2-cp38-abi3-macosx_10_9_universal2.whl (424 kB) | |
Collecting jedi>=0.16 | |
Using cached jedi-0.18.2-py2.py3-none-any.whl (1.6 MB) | |
Collecting matplotlib-inline | |
Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB) | |
Collecting stack-data | |
Using cached stack_data-0.6.2-py3-none-any.whl (24 kB) | |
Collecting pygments>=2.4.0 | |
Using cached Pygments-2.15.1-py3-none-any.whl (1.1 MB) | |
Collecting decorator | |
Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB) | |
Collecting traitlets>=5 | |
Using cached traitlets-5.9.0-py3-none-any.whl (117 kB) | |
Collecting backcall | |
Using cached backcall-0.2.0-py2.py3-none-any.whl (11 kB) | |
Collecting pexpect>4.3 | |
Using cached pexpect-4.8.0-py2.py3-none-any.whl (59 kB) | |
Collecting pickleshare | |
Using cached pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB) | |
Collecting prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30 | |
Using cached prompt_toolkit-3.0.38-py3-none-any.whl (385 kB) | |
Collecting appnope | |
Using cached appnope-0.1.3-py2.py3-none-any.whl (4.4 kB) | |
Collecting iniconfig | |
Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB) | |
Collecting exceptiongroup>=1.0.0rc8 | |
Using cached exceptiongroup-1.1.1-py3-none-any.whl (14 kB) | |
Collecting pluggy<2.0,>=0.12 | |
Using cached pluggy-1.0.0-py2.py3-none-any.whl (13 kB) | |
Collecting coverage[toml]>=5.2.1 | |
Using cached coverage-7.2.7-cp310-cp310-macosx_11_0_arm64.whl (201 kB) | |
Collecting parso<0.9.0,>=0.8.0 | |
Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB) | |
Collecting MarkupSafe>=2.0 | |
Using cached MarkupSafe-2.1.3-cp310-cp310-macosx_10_9_universal2.whl (17 kB) | |
Collecting ptyprocess>=0.5 | |
Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) | |
Collecting wcwidth | |
Using cached wcwidth-0.2.6-py2.py3-none-any.whl (29 kB) | |
Collecting six>=1.5 | |
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) | |
Collecting executing>=1.2.0 | |
Using cached executing-1.2.0-py2.py3-none-any.whl (24 kB) | |
Collecting asttokens>=2.1.0 | |
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Collecting pure-eval | |
Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB) | |
Installing collected packages: wcwidth, pure-eval, ptyprocess, pickleshare, find_libpython, executing, backcall, appnope, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython | |
Attempting uninstall: setuptools | |
Found existing installation: setuptools 65.4.1 | |
Uninstalling setuptools-65.4.1: | |
Successfully uninstalled setuptools-65.4.1 | |
Attempting uninstall: pip | |
Found existing installation: pip 22.2.2 | |
Uninstalling pip-22.2.2: | |
Successfully uninstalled pip-22.2.2 | |
Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.3 PyYAML-6.0 appnope-0.1.3 asttokens-2.2.1 backcall-0.2.0 bokeh-2.4.3 contourpy-1.0.7 coverage-7.2.7 cycler-0.11.0 cython-0.29.35 decorator-5.1.1 distro-1.8.0 exceptiongroup-1.1.1 executing-1.2.0 find_libpython-0.3.0 fonttools-4.39.4 iniconfig-2.0.0 ipython-8.14.0 jedi-0.18.2 kiwisolver-1.4.4 matplotlib-3.7.1 matplotlib-inline-0.1.6 mpi4py-3.1.4 numpy-1.24.3 packaging-23.1 parso-0.8.3 pexpect-4.8.0 pickleshare-0.7.5 pillow-9.5.0 pip-23.1.2 pluggy-1.0.0 prompt-toolkit-3.0.38 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.15.1 pyparsing-3.0.9 pytest-7.3.1 pytest-cov-4.1.0 python-dateutil-2.8.2 scikit-build-0.17.6 setuptools-67.8.0 setuptools_scm-7.1.0 six-1.16.0 stack-data-0.6.2 tomli-2.0.1 tornado-6.3.2 traitlets-5.9.0 typing-extensions-4.6.3 wcwidth-0.2.6 wheel-0.40.0 | |
[32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m | |
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl' | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/nmodl'... | |
Submodule path 'external/nmodl': checked out '2ce4a2b91dfcfe6356b6a5003c4e99b8711564ee' | |
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions' | |
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2' | |
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11' | |
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen' | |
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt' | |
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json' | |
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11' | |
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog' | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'... | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/nmodl/ext/catch2'... | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/nmodl/ext/cli11'... | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/nmodl/ext/eigen'... | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/nmodl/ext/fmt'... | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/nmodl/ext/json'... | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/nmodl/ext/pybind11'... | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/nmodl/ext/spdlog'... | |
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d' | |
From https://github.com/catchorg/Catch2 | |
* branch 3f0283de7a9c43200033da996ff9093be3ac84dc -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/catch2': checked out '3f0283de7a9c43200033da996ff9093be3ac84dc' | |
From https://github.com/CLIUtils/CLI11 | |
* branch b9be5b9444772324459989177108a6a65b8b2769 -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/cli11': checked out 'b9be5b9444772324459989177108a6a65b8b2769' | |
From https://gitlab.com/libeigen/eigen | |
* branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
From https://github.com/fmtlib/fmt | |
* branch a33701196adfad74917046096bf5a2aa0ab0bb50 -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/fmt': checked out 'a33701196adfad74917046096bf5a2aa0ab0bb50' | |
From https://github.com/nlohmann/json | |
* branch 4f8fba14066156b73f1189a2b8bd568bde5284c5 -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/json': checked out '4f8fba14066156b73f1189a2b8bd568bde5284c5' | |
From https://github.com/pybind/pybind11 | |
* branch 914c06fb252b6cc3727d0eedab6736e88a3fcb01 -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/pybind11': checked out '914c06fb252b6cc3727d0eedab6736e88a3fcb01' | |
From https://github.com/gabime/spdlog | |
* branch 76fb40d95455f249bd70824ecfcae7a8f0930fa3 -> FETCH_HEAD | |
Submodule path 'external/nmodl/ext/spdlog': checked out '76fb40d95455f249bd70824ecfcae7a8f0930fa3' | |
[32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m | |
Requirement already satisfied: Jinja2>=2.9.3 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 1)) (3.1.2) | |
Requirement already satisfied: PyYAML>=3.13 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 2)) (6.0) | |
Requirement already satisfied: pytest in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 3)) (7.3.1) | |
Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 4)) (4.1.0) | |
Collecting sympy (from -r external/nmodl/requirements.txt (line 5)) | |
Using cached sympy-1.12-py3-none-any.whl (5.7 MB) | |
Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 6)) (1.24.3) | |
Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 7)) (0.3.0) | |
Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 1)) (2.1.3) | |
Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.0) | |
Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (23.1) | |
Requirement already satisfied: pluggy<2.0,>=0.12 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.0.0) | |
Requirement already satisfied: exceptiongroup>=1.0.0rc8 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.1.1) | |
Requirement already satisfied: tomli>=1.0.0 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.1) | |
Requirement already satisfied: coverage[toml]>=5.2.1 in ./venv/lib/python3.10/site-packages (from pytest-cov->-r external/nmodl/requirements.txt (line 4)) (7.2.7) | |
Collecting mpmath>=0.19 (from sympy->-r external/nmodl/requirements.txt (line 5)) | |
Using cached mpmath-1.3.0-py3-none-any.whl (536 kB) | |
Installing collected packages: mpmath, sympy | |
Successfully installed mpmath-1.3.0 sympy-1.12 | |
[32;1m$ source ./venv/bin/activate[0;m | |
[32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m | |
[32;1m$ ${PYTHON} --version[0;m | |
Python 3.10.8 | |
[32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m | |
[32;1m$ export CXX=${CXX:-g++}[0;m | |
[32;1m$ export CC=${CC:-gcc}[0;m | |
[32;1m$ brew install flex bison[0;m | |
Warning: flex 2.6.4_2 is already installed and up-to-date. | |
To reinstall 2.6.4_2, run: | |
brew reinstall flex | |
Warning: bison 3.8.2 is already installed and up-to-date. | |
To reinstall 3.8.2, run: | |
brew reinstall bison | |
[32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m | |
[32;1m$ export INSTALL_DIR=$(pwd)/install[0;m | |
[32;1m$ echo $LANG[0;m | |
[32;1m$ echo $LC_ALL[0;m | |
[32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m | |
[32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m | |
[32;1m$ cmake_args=(-G Ninja)[0;m | |
[32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m | |
[32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m | |
[32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m | |
[32;1m$ mkdir build && cd build[0;m | |
[32;1m$ echo "Building with ${cmake_args[@]}"[0;m | |
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/venv/bin/python | |
[32;1m$ cmake .. "${cmake_args[@]}"[0;m | |
-- The C compiler identification is AppleClang 14.0.0.14000029 | |
-- The CXX compiler identification is AppleClang 14.0.0.14000029 | |
-- Detecting C compiler ABI info | |
-- Detecting C compiler ABI info - done | |
-- Check for working C compiler: /usr/bin/gcc - skipped | |
-- Detecting C compile features | |
-- Detecting C compile features - done | |
-- Detecting CXX compiler ABI info | |
-- Detecting CXX compiler ABI info - done | |
-- Check for working CXX compiler: /usr/bin/g++ - skipped | |
-- Detecting CXX compile features | |
-- Detecting CXX compile features - done | |
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check | |
-- Sub-module : missing external/coding-conventions : running git submodule update --init | |
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions' | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/coding-conventions'... | |
Submodule path 'external/coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d' | |
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123 | |
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123' | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/Random123'... | |
From https://github.com/BlueBrain/Random123 | |
* branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD | |
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1' | |
-- 3rd party project: using Random123 from "external/Random123" | |
-- Enabling sanitizers: address | |
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
-- Checking if /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/venv/bin/python is a working python | |
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") | |
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6") | |
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include | |
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1") | |
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1") | |
-- Found MPI: TRUE (found version "3.1") | |
-- Detected OpenMPI 4.1.4 | |
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
-- Found Threads: TRUE | |
-- Building CoreNEURON | |
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11 | |
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11' | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/CLI11'... | |
From https://github.com/CLIUtils/CLI11 | |
* branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD | |
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2' | |
-- 3rd party project: using CLI11 from "external/CLI11" | |
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") | |
-- Found Perl: /usr/bin/perl (found version "5.30.3") | |
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH) | |
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/nmodl | |
-- CHECKING FOR FLEX/BISON | |
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") | |
-- Adding Flex include path as : /opt/homebrew/opt/flex/include/ | |
-- NMODL_TEST_FORMATTING: OFF | |
-- NMODL_GIT_HOOKS: OFF | |
-- NMODL_GIT_COMMIT_HOOKS: | |
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg | |
-- NMODL_STATIC_ANALYSIS: OFF | |
-- NMODL_TEST_STATIC_ANALYSIS: OFF | |
-- 3rd party project: using eigen from "ext/eigen" | |
-- 3rd party project: using fmt from "ext/fmt" | |
-- Module support is disabled. | |
-- Version: 9.1.0 | |
-- Build type: Custom | |
-- CXX_STANDARD: 17 | |
-- Required features: cxx_variadic_templates | |
-- 3rd party project: using json from "ext/json" | |
-- Using the single-header code from /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/nmodl/ext/json/single_include/ | |
-- 3rd party project: using pybind11 from "ext/pybind11" | |
-- pybind11 v2.9.2 | |
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/venv/bin/python (found version "3.10.8") | |
-- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
-- 3rd party project: using spdlog from "ext/spdlog" | |
-- Build spdlog: 1.10.0 | |
-- Build type: Custom | |
-- CHECKING FOR PYTHON | |
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.8", minimum required is "3.8") | |
-- | |
-- Configured NMODL 0.0 (2ce4a2b 2023-06-05 16:57:21 +0200) | |
-- | |
-- You can now build NMODL using: | |
-- cmake --build . --parallel 8 [--target TARGET] | |
-- You might want to adjust the number of parallel build jobs for your system. | |
-- Some non-default targets you might want to build: | |
-- --------------------+-------------------------------------------------------- | |
-- Target | Description | |
-- --------------------+-------------------------------------------------------- | |
-- test | Run unit tests | |
-- install | Will install NMODL to: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install | |
-- --------------------+-------------------------------------------------------- | |
-- Build option | Status | |
-- --------------------+-------------------------------------------------------- | |
-- CXX COMPILER | /usr/bin/g++ | |
-- COMPILE FLAGS | -O1 -g | |
-- Build Type | Custom | |
-- Legacy Units | OFF | |
-- Python Bindings | ON | |
-- Flex | /opt/homebrew/opt/flex/bin/flex | |
-- Bison | /opt/homebrew/opt/bison/bin/bison | |
-- Python | /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/venv/bin/python | |
-- Linked against | TRUE | |
-- --------------+-------------------------------------------------------------- | |
-- See documentation : https://github.com/BlueBrain/nmodl/ | |
-- --------------+-------------------------------------------------------------- | |
-- | |
-- Boost found, unit tests enabled | |
-- | |
-- CoreNEURON is enabled with following build configuration: | |
-- --------------------+-------------------------------------------------------- | |
-- Build option | Status | |
-- --------------------+-------------------------------------------------------- | |
-- CXX COMPILER | /usr/bin/g++ | |
-- COMPILE FLAGS | -O1 -g -std=c++17 -DCORENEURON_BUILD -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -DCORENEURON_USE_LEGACY_UNITS=0 -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
-- Build Type | SHARED | |
-- MPI | ON | |
-- DYNAMIC | OFF | |
-- INC | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include | |
-- OpenMP | ON | |
-- Use legacy units | OFF | |
-- NMODL PATH | /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/bin/nmodl | |
-- NMODL FLAGS | | |
-- GPU Support | OFF | |
-- Auto Timeout | ON | |
-- Wrap exp() | OFF | |
-- SplayTree Queue | ON | |
-- NetReceive Buffer | ON | |
-- Caliper | OFF | |
-- Likwid | OFF | |
-- Unit Tests | ON | |
-- Reporting | OFF | |
-- --------------+-------------------------------------------------------------- | |
-- | |
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: | |
Generating link flags from path /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib | |
Generating link flags from path /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
-- Sub-module : missing /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/catch2 : running git submodule update --init | |
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2' | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/external/catch2'... | |
Submodule path 'external/catch2': checked out 'c4e3767e265808590986d5db6ca1b5532a7f3d13' | |
-- Found Python module 'pytest' with version(s): 7.3.1 | |
-- Found Python module 'pytest_cov' with version(s): 4.1.0 | |
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata | |
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata' | |
Cloning into '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/test/rxd/testdata'... | |
From https://github.com/neuronsimulator/rxdtestdata | |
* branch be297655abf0f98be95a051576d43aad23cebbf0 -> FETCH_HEAD | |
Submodule path 'test/rxd/testdata': checked out 'be297655abf0f98be95a051576d43aad23cebbf0' | |
-- 3rd party project: using rxd/testdata from "test/rxd/testdata" | |
-- Found Python module 'mpi4py' with version(s): 3.1.4 | |
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled | |
-- Found Python module 'mpi4py' with version(s): 3.1.4 | |
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::inputpresyn_py_gpu: gpu not enabled | |
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled | |
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled | |
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled | |
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled | |
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled | |
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled | |
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled | |
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled | |
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled | |
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled | |
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled | |
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled | |
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled | |
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled | |
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled | |
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled | |
-- Could NOT find OpenSSL, try to set the path to OpenSSL root folder in the system variable OPENSSL_ROOT_DIR (missing: OPENSSL_CRYPTO_LIBRARY OPENSSL_INCLUDE_DIR) | |
-- Skipping tqperf test as OpenSSL package not found | |
-- | |
-- Configured NEURON 9.0.0 | |
-- | |
-- You can now build NEURON using: | |
-- cmake --build . --parallel 8 [--target TARGET] | |
-- You might want to adjust the number of parallel build jobs for your system. | |
-- Some non-default targets you might want to build: | |
-- --------------+-------------------------------------------------------------- | |
-- Target | Description | |
-- --------------+-------------------------------------------------------------- | |
-- install | Will install NEURON to: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install | |
-- | Change the install location of NEURON using: | |
-- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path> | |
-- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean | |
-- uninstall | Removes files installed by make install (todo) | |
-- --------------+-------------------------------------------------------------- | |
-- Build option | Status | |
-- --------------+-------------------------------------------------------------- | |
-- C COMPILER | /usr/bin/gcc | |
-- CXX COMPILER | /usr/bin/g++ | |
-- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast) | |
-- COMPILE FLAGS | -O1 -g -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
-- Shared | ON | |
-- Default units | modern units (2019 nist constants) | |
-- MPI | ON | |
-- DYNAMIC | OFF | |
-- INC | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include | |
-- LIB | /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib | |
-- Python | ON | |
-- DYNAMIC | OFF | |
-- MODULE | ON | |
-- python3.10 (default) | |
-- EXE | /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/venv/bin/python | |
-- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 | |
-- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
-- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd | |
-- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd | |
-- RX3D | OFF | |
-- Interviews | OFF | |
-- CoreNEURON | ON | |
-- PATH | /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/coreneuron | |
-- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib | |
-- Legacy Units| OFF | |
-- Tests | ON | |
-- --------------+-------------------------------------------------------------- | |
-- See documentation : https://www.neuron.yale.edu/neuron/ | |
-- --------------+-------------------------------------------------------------- | |
-- | |
-- Configuring done | |
-- Generating done | |
-- Build files have been written to: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build | |
[32;1m$ ccache -z[0;m | |
Statistics zeroed | |
[32;1m$ ccache -vs 2>/dev/null[0;m | |
Cache directory: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/ccache | |
Config file: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/ccache/ccache.conf | |
System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf | |
Stats updated: Tue Jun 6 10:58:44 2023 | |
Local storage: | |
Cache size (GB): 0.00 / 5.00 ( 0.00%) | |
Files: 0 | |
Hits: 0 | |
Misses: 0 | |
Reads: 0 | |
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[468/1726] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/utils/vrecord.cpp.o | |
[469/1726] Building CXX object external/nmodl/ext/fmt/CMakeFiles/fmt.dir/src/os.cc.o | |
[470/1726] -- NMODL : GENERATING AST CLASSES WITH PYTHON GENERATOR! -- | |
[471/1726] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/file_sinks.cpp.o | |
[472/1726] -- NMODL : GENERATING VERBATIM PARSER WITH BISON! -- | |
../../../../../external/nmodl/src/parser/verbatim.yy:29.1-24: warning: deprecated directive: '%name-prefix "Verbatim_"', use '%define api.prefix {Verbatim_}' [-Wdeprecated] | |
29 | %name-prefix "Verbatim_" | |
| ^~~~~~~~~~~~~~~~~~~~~~~~ | |
| %define api.prefix {Verbatim_} | |
../../../../../external/nmodl/src/parser/verbatim.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
[473/1726] -- NMODL : GENERATING DIFFERENTIAL EQUATION PARSER WITH BISON! -- | |
../../../../../external/nmodl/src/parser/diffeq.yy:57.1-40: warning: deprecated directive: '%define parser_class_name {DiffeqParser}', use '%define api.parser.class {DiffeqParser}' [-Wdeprecated] | |
57 | %define parser_class_name {DiffeqParser} | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| %define api.parser.class {DiffeqParser} | |
../../../../../external/nmodl/src/parser/diffeq.yy: warning: 2 shift/reduce conflicts [-Wconflicts-sr] | |
../../../../../external/nmodl/src/parser/diffeq.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
../../../../../external/nmodl/src/parser/diffeq.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
[474/1726] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/code_printer.cpp.o | |
[475/1726] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/stdout_sinks.cpp.o | |
[476/1726] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/cfg.cpp.o | |
[477/1726] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/color_sinks.cpp.o | |
[478/1726] -- NMODL : GENERATING UNIT PARSER WITH BISON! -- | |
../../../../../external/nmodl/src/parser/unit.yy:49.1-38: warning: deprecated directive: '%define parser_class_name {UnitParser}', use '%define api.parser.class {UnitParser}' [-Wdeprecated] | |
49 | %define parser_class_name {UnitParser} | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| %define api.parser.class {UnitParser} | |
../../../../../external/nmodl/src/parser/unit.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
[479/1726] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/async.cpp.o | |
[480/1726] -- NMODL : GENERATING C (11) PARSER WITH BISON! -- | |
../../../../../external/nmodl/src/parser/c11.yy:52.1-35: warning: deprecated directive: '%define parser_class_name {CParser}', use '%define api.parser.class {CParser}' [-Wdeprecated] | |
52 | %define parser_class_name {CParser} | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| %define api.parser.class {CParser} | |
../../../../../external/nmodl/src/parser/c11.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
[481/1726] Building CXX object external/nmodl/ext/fmt/CMakeFiles/fmt.dir/src/format.cc.o | |
[482/1726] Linking CXX static library lib/libfmt.a | |
[483/1726] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/nmodl_printer.cpp.o | |
[484/1726] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/common_utils.cpp.o | |
[485/1726] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/file_library.cpp.o | |
[486/1726] -- NMODL : GENERATING NMODL_CORE PARSER WITH BISON! -- | |
../../../../../external/nmodl/src/parser/nmodl.yy:65.1-39: warning: deprecated directive: '%define parser_class_name {NmodlParser}', use '%define api.parser.class {NmodlParser}' [-Wdeprecated] | |
65 | %define parser_class_name {NmodlParser} | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| %define api.parser.class {NmodlParser} | |
../../../../../external/nmodl/src/parser/nmodl.yy: warning: 3 shift/reduce conflicts [-Wconflicts-sr] | |
../../../../../external/nmodl/src/parser/nmodl.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
../../../../../external/nmodl/src/parser/nmodl.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
[487/1726] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/string_utils.cpp.o | |
[488/1726] -- COPYING NMODL PYTHON FILES -- | |
[489/1726] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/perf_stat.cpp.o | |
[490/1726] [FLEX][modlunitlexer] Building scanner with flex 2.6.4 | |
[491/1726] [BISON][nocmodlparser] Building parser with bison 3.8.2 | |
../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr] | |
../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
[492/1726] [FLEX][nocmodllexer] Building scanner with flex 2.6.4 | |
[493/1726] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/__/config/config.cpp.o | |
[494/1726] [BISON][modlunitparser] Building parser with bison 3.8.2 | |
[495/1726] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/table_data.cpp.o | |
[496/1726] [BISON][nocmodlparser] Building parser with bison 3.8.2 | |
../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr] | |
../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
[497/1726] [BISON][ocparser] Building parser with bison 3.8.2 | |
../src/oc/parse.ypp: warning: 96 shift/reduce conflicts [-Wconflicts-sr] | |
../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
[498/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/consist.cpp.o | |
[499/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/declare.cpp.o | |
[500/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/init.cpp.o | |
[501/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/io.cpp.o | |
[502/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/kinunit.cpp.o | |
[503/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/list.cpp.o | |
[504/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/model.cpp.o | |
[505/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/nrnunit.cpp.o | |
[506/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/symbol.cpp.o | |
[507/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/passn.cpp.o | |
[508/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units.cpp.o | |
[509/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units1.cpp.o | |
[510/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/version.cpp.o | |
[511/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/lex.cpp.o | |
[512/1726] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/json_printer.cpp.o | |
[513/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/consist.cpp.o | |
[514/1726] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/parse1.cpp.o | |
[515/1726] Linking CXX executable bin/modlunit | |
[516/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/deriv.cpp.o | |
[517/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/discrete.cpp.o | |
[518/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/init.cpp.o | |
[519/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/io.cpp.o | |
[520/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/kinetic.cpp.o | |
[521/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/modl.cpp.o | |
[522/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/list.cpp.o | |
[523/1726] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/spdlog.cpp.o | |
[524/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/noccout.cpp.o | |
[525/1726] Linking CXX static library lib/libspdlog.a | |
[526/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/netrec_discon.cpp.o | |
[527/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/simultan.cpp.o | |
[528/1726] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/corenrn_parameters.cpp.o | |
[529/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/parsact.cpp.o | |
[530/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/solve.cpp.o | |
[531/1726] Linking CXX static library lib/libcoreneuron-core.a | |
[532/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/version.cpp.o | |
[533/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/symbol.cpp.o | |
[534/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/units.cpp.o | |
[535/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/nocpout.cpp.o | |
[536/1726] Generating ../oc/hocusr.h | |
[537/1726] Generating coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py | |
[538/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o | |
[539/1726] Generating nrniv_script.py/do_nothing.py | |
[540/1726] Generating nrniv_script.py_error/assert_false.py | |
[541/1726] Generating nrniv_two_scripts.py/do_nothing.py | |
[542/1726] Generating nrniv_two_scripts.py_error_check_code/do_nothing.py | |
[543/1726] Generating nrniv_two_scripts.py_error_check_code/assert_false.py | |
[544/1726] Generating nrniv_two_scripts.py_error_check_output/do_nothing.py | |
[545/1726] Generating nrniv_two_scripts.py_error_check_output/assert_false.py | |
[546/1726] Generating nrniv_python_script.py/do_nothing.py | |
[547/1726] Generating nrniv_python_script.py_twice/assert_false.py | |
[548/1726] Generating nrniv_python_script.py_error/assert_false.py | |
[549/1726] Generating nrniv_python_script.py_args/assert_last_args_are_foo_and_bar.py | |
[550/1726] Generating nrniv_python_script.py_twice/do_nothing.py | |
[551/1726] Generating nrniv_py3.10_python_check_sys_path/check_sys_attr.py | |
[552/1726] Generating nrniv_py3.10_nrnpython_check_sys_path/check_sys_attr.hoc | |
[553/1726] Generating nrniv_py3.10_python_check_sys_path/dump_sys_attr.py | |
[554/1726] Generating nrniv_py3.10_nrnpython_check_sys_path/dump_sys_attr.py | |
[555/1726] Generating nrniv_py3.10_python_check_sys_prefix/check_sys_attr.py | |
[556/1726] Generating nrniv_py3.10_python_check_sys_prefix/dump_sys_attr.py | |
[557/1726] Generating nrniv_py3.10_nrnpython_check_sys_prefix/check_sys_attr.hoc | |
[558/1726] Generating nrniv_py3.10_nrnpython_check_sys_prefix/dump_sys_attr.py | |
[559/1726] Generating nrniv_py3.10_python_check_sys_exec_prefix/check_sys_attr.py | |
[560/1726] Generating nrniv_py3.10_python_check_sys_exec_prefix/dump_sys_attr.py | |
[561/1726] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o | |
[562/1726] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc | |
[563/1726] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/dump_sys_attr.py | |
[564/1726] Generating nrniv_py3.10_python_check_sys_base_prefix/check_sys_attr.py | |
[565/1726] Generating nrniv_py3.10_python_check_sys_base_prefix/dump_sys_attr.py | |
[566/1726] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/check_sys_attr.hoc | |
[567/1726] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/dump_sys_attr.py | |
[568/1726] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/check_sys_attr.py | |
[569/1726] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/dump_sys_attr.py | |
[570/1726] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc | |
[571/1726] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py | |
[572/1726] Generating nrniv_py3.10_python_check_sys_stderr.encoding/check_sys_attr.py | |
[573/1726] Generating nrniv_py3.10_python_check_sys_stderr.encoding/dump_sys_attr.py | |
[574/1726] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc | |
[575/1726] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py | |
[576/1726] Linking CXX shared library lib/librxdmath.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
[577/1726] Generating nrniv_py3.10_python_check_sys_stdin.encoding/check_sys_attr.py | |
[578/1726] Generating nrniv_py3.10_python_check_sys_stdin.encoding/dump_sys_attr.py | |
[579/1726] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc | |
[580/1726] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py | |
[581/1726] Generating nrniv_py3.10_python_check_sys_stdout.encoding/check_sys_attr.py | |
[582/1726] Generating nrniv_py3.10_python_check_sys_stdout.encoding/dump_sys_attr.py | |
[583/1726] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc | |
[584/1726] Generating nrniv_pydef_python_check_sys_path/check_sys_attr.py | |
[585/1726] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py | |
[586/1726] Generating nrniv_pydef_python_check_sys_path/dump_sys_attr.py | |
[587/1726] Generating nrniv_pydef_nrnpython_check_sys_path/check_sys_attr.hoc | |
[588/1726] Generating nrniv_pydef_nrnpython_check_sys_path/dump_sys_attr.py | |
[589/1726] Generating nrniv_pydef_python_check_sys_prefix/check_sys_attr.py | |
[590/1726] Building CXX object external/nmodl/src/pybind/CMakeFiles/pyembed.dir/pyembed.cpp.o | |
[591/1726] Generating nrniv_pydef_python_check_sys_prefix/dump_sys_attr.py | |
[592/1726] Generating nrniv_pydef_nrnpython_check_sys_prefix/check_sys_attr.hoc | |
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[595/1726] Generating nrniv_pydef_python_check_sys_exec_prefix/dump_sys_attr.py | |
[596/1726] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc | |
[597/1726] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/dump_sys_attr.py | |
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[599/1726] Generating nrniv_pydef_python_check_sys_base_prefix/dump_sys_attr.py | |
[600/1726] Generating nrniv_pydef_python_check_sys_base_exec_prefix/check_sys_attr.py | |
[601/1726] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/check_sys_attr.hoc | |
[602/1726] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/dump_sys_attr.py | |
[603/1726] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py | |
[604/1726] Generating nrniv_pydef_python_check_sys_stderr.encoding/check_sys_attr.py | |
[605/1726] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc | |
[606/1726] Generating nrniv_pydef_python_check_sys_base_exec_prefix/dump_sys_attr.py | |
[607/1726] Generating nrniv_pydef_python_check_sys_stdin.encoding/check_sys_attr.py | |
[608/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o | |
[609/1726] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc | |
[610/1726] Generating nrniv_pydef_python_check_sys_stderr.encoding/dump_sys_attr.py | |
[611/1726] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py | |
[612/1726] Generating nrniv_pydef_python_check_sys_stdin.encoding/dump_sys_attr.py | |
[613/1726] Generating nrniv_pydef_python_check_sys_stdout.encoding/check_sys_attr.py | |
[614/1726] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc | |
[615/1726] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py | |
[616/1726] Generating nrniv_pydef_python_check_sys_stdout.encoding/dump_sys_attr.py | |
[617/1726] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc | |
[618/1726] Generating ../tests/ringtest/reference_data/spk1.100ms.std.ref | |
[619/1726] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py | |
[620/1726] Generating ../../compare_test_results.py | |
[621/1726] Generating ../tests/testcorenrn/reference/out_bbcore.spk | |
[622/1726] Generating ../tests/testcorenrn/reference/out_conc.spk | |
[623/1726] Generating ../tests/testcorenrn/reference/out_deriv.spk | |
[624/1726] Generating ../tests/testcorenrn/reference/out_gf.spk | |
[625/1726] Generating ../tests/testcorenrn/reference/out_kin.spk | |
[626/1726] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o | |
[627/1726] Generating ../tests/testcorenrn/reference/out_vecplay.spk | |
[628/1726] Generating ../tests/testcorenrn/reference/out_vecevent.spk | |
[629/1726] Generating ../tests/testcorenrn/reference/out_patstim.spk | |
[630/1726] Generating ../tests/testcorenrn/reference/out_netstimdirect.spk | |
[631/1726] Generating ../tests/testcorenrn/reference/out_watch.spk | |
[632/1726] Linking CXX executable bin/nocmodl | |
[633/1726] cd /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h | |
fatal: No names found, cannot describe anything. | |
[634/1726] Building CXX object external/nmodl/src/pybind/CMakeFiles/pywrapper.dir/wrapper.cpp.o | |
[635/1726] Linking CXX static library lib/libpywrapper.a | |
[636/1726] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/logger.cpp.o | |
[637/1726] Linking CXX static library lib/libutil.a | |
[638/1726] Generating ../nrnoc/intfire4.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/intfire4.cpp | |
Thread Safe | |
[639/1726] Generating ../nrnoc/feature.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/feature.cpp | |
Notice: VERBATIM blocks are not thread safe | |
[640/1726] Generating ../nrnoc/exp2syn.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp | |
Thread Safe | |
[641/1726] Generating ../nrnoc/apcount.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/apcount.cpp | |
Thread Safe | |
[642/1726] Generating ../nrnoc/intfire1.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/intfire1.cpp | |
Thread Safe | |
[643/1726] Generating ../nrnoc/hh.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/hh.cpp | |
Thread Safe | |
[644/1726] Generating ../nrnoc/intfire2.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/intfire2.cpp | |
Thread Safe | |
[645/1726] Generating ../nrnoc/expsyn.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/expsyn.cpp | |
Thread Safe | |
[646/1726] -- NMODL : GENERATING NMODL LEXER WITH FLEX! -- | |
../../../../../external/nmodl/src/lexer/nmodl.ll:506: warning, -s option given but default rule can be matched | |
[647/1726] Generating ../nrnoc/netstim.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/netstim.cpp | |
Thread Safe | |
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
only affects and is affected by discrete events. As such it is not | |
located in a section and is not associated with an integrator | |
[648/1726] -- NMODL : GENERATING UNIT LEXER WITH FLEX! -- | |
../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched | |
[649/1726] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! -- | |
[650/1726] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! -- | |
../../../../../external/nmodl/src/lexer/diffeq.ll:103: warning, -s option given but default rule can be matched | |
[651/1726] -- NMODL : GENERATING C(11) LEXER WITH FLEX! -- | |
[652/1726] Linking CXX static library lib/libpyembed.a | |
[653/1726] Generating ../nrnoc/pattern.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/pattern.cpp | |
Thread Safe | |
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
only affects and is affected by discrete events. As such it is not | |
located in a section and is not associated with an integrator | |
[654/1726] Generating ../nrnoc/ppmark.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/ppmark.cpp | |
Thread Safe | |
[655/1726] Generating ../nrnoc/passive.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/passive.cpp | |
Thread Safe | |
[656/1726] Generating ../nrnoc/stim.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/stim.cpp | |
Thread Safe | |
[657/1726] Generating ../nrnoc/oclmp.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/oclmp.cpp | |
Thread Safe | |
[658/1726] Generating ../nrnoc/svclmp.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/svclmp.cpp | |
Thread Safe | |
[659/1726] Generating ../nrnoc/syn.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/syn.cpp | |
Thread Safe | |
[660/1726] Generating ../nrnoc/vclmp.cpp | |
Translating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/src/nrnoc/vclmp.cpp | |
Notice: VERBATIM blocks are not thread safe | |
Notice: LINEAR is not thread safe. | |
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INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS | |
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INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'}) | |
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!! | |
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Requirements should be satisfied by a PEP 517 installer. | |
If you are using pip, you can try `pip install --use-pep517`. | |
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!! | |
dist.fetch_build_eggs(dist.setup_requires) | |
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INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
INFO:root:creating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
INFO:root:creating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
INFO:root:creating /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
INFO:root:running build_ext | |
INFO:root:==> Building Python extensions | |
INFO:root:building 'neuron.hoc' extension | |
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17 | |
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../ | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
INFO:root:running build_scripts | |
INFO:root:creating build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10 | |
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10 | |
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755 | |
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755 | |
[1115/1726] Generating nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/ppxsrc.mod | |
[1116/1726] Running nrnivmodl-core with internal mod files | |
WARNING: No mod files found in '/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/bin', compiling default ones only! | |
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
Default NMODL flags: | |
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> Binary creating arm64/special-core | |
[INFO] MOD files built successfully for CoreNEURON | |
[1117/1726] Building special[-core] for test group datahandle | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/0d1c074f6d3132c5eb8130f03f94c42b729f4de7813b97d7ff4ee3e83dcc4106 | |
cfiles = | |
Mod files: "./ptr.mod" | |
MODOBJS= ./ptr.o | |
-> Compiling mod_func.cpp | |
-> NMODL .././ptr.mod | |
Translating ptr.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/0d1c074f6d3132c5eb8130f03f94c42b729f4de7813b97d7ff4ee3e83dcc4106/arm64/ptr.cpp | |
Notice: Use of POINTER is not thread safe. | |
-> Compiling ptr.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
[1118/1726] Building special[-core] for test group coverage_tests | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51 | |
cfiles = | |
Mod files: "./ppxsrc.mod" | |
MODOBJS= ./ppxsrc.o | |
-> Compiling mod_func.cpp | |
-> NMODL .././ppxsrc.mod | |
Translating ppxsrc.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp | |
Thread Safe | |
-> Compiling ppxsrc.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
[1119/1726] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/mechanism.cpp.o | |
[1120/1726] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/benchmarks/threads/test_multicore.cpp.o | |
[1121/1726] Building special[-core] for test group pynrn | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/d625e9e489d98d3dd35f8589f9bf50f428f7f90d24be979068bb87813edcfebe | |
cfiles = | |
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o | |
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
Default NMODL flags: | |
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/follower.mod | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gap.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/name_clashes.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> Binary creating arm64/special-core | |
[INFO] MOD files built successfully for CoreNEURON | |
-> Compiling mod_func.cpp | |
-> NMODL .././follower.mod | |
-> NMODL .././gap.mod | |
-> NMODL .././name_clashes.mod | |
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/d625e9e489d98d3dd35f8589f9bf50f428f7f90d24be979068bb87813edcfebe/arm64/name_clashes.cpp | |
Thread Safe | |
Translating follower.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/d625e9e489d98d3dd35f8589f9bf50f428f7f90d24be979068bb87813edcfebe/arm64/follower.cpp | |
Thread Safe | |
Translating gap.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/d625e9e489d98d3dd35f8589f9bf50f428f7f90d24be979068bb87813edcfebe/arm64/gap.cpp | |
Thread Safe | |
-> NMODL .././unitstest.mod | |
-> NMODL .././version_macros.mod | |
-> Compiling follower.cpp | |
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/d625e9e489d98d3dd35f8589f9bf50f428f7f90d24be979068bb87813edcfebe/arm64/unitstest.cpp | |
Thread Safe | |
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/d625e9e489d98d3dd35f8589f9bf50f428f7f90d24be979068bb87813edcfebe/arm64/version_macros.cpp | |
Thread Safe | |
-> Compiling gap.cpp | |
-> Compiling name_clashes.cpp | |
-> Compiling unitstest.cpp | |
-> Compiling version_macros.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
[1122/1726] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/nrn/demo/release | |
cfiles = | |
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./mcna.o ./nacaex.o ./nachan.o ./release.o | |
-> NMODL ../cabpump.mod | |
-> Compiling mod_func.cpp | |
-> NMODL ../camchan.mod | |
-> NMODL ../cachan1.mod | |
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp | |
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp | |
Translating camchan.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp | |
Thread Safe | |
Thread Safe | |
-> NMODL ../capump.mod | |
-> NMODL ../invlfire.mod | |
-> NMODL ../khhchan.mod | |
Translating capump.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp | |
Thread Safe | |
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp | |
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp | |
Thread Safe | |
Thread Safe | |
-> NMODL ../mcna.mod | |
-> NMODL ../nacaex.mod | |
-> NMODL ../nachan.mod | |
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp | |
Thread Safe | |
Translating nachan.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp | |
Thread Safe | |
-> NMODL ../release.mod | |
Translating mcna.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/mcna.cpp | |
Thread Safe | |
-> Compiling cabpump.cpp | |
-> Compiling cachan1.cpp | |
Translating release.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp | |
Thread Safe | |
-> Compiling camchan.cpp | |
-> Compiling capump.cpp | |
-> Compiling invlfire.cpp | |
-> Compiling khhchan.cpp | |
-> Compiling mcna.cpp | |
-> Compiling nacaex.cpp | |
-> Compiling nachan.cpp | |
-> Compiling release.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
[1123/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/gui_pycallobject.py | |
[1124/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/run_pytest.py | |
[1125/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_a_neuronoptions.py | |
[1126/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_basic.py | |
[1127/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_bbss.py | |
[1128/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_fast_imem.py | |
[1129/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_hoc_po.py | |
[1130/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_loadbal.py | |
[1131/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_multigid.py | |
[1132/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_netpar.py | |
[1133/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_nlayer.py | |
[1134/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_nrnste.py | |
[1135/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_nrntest_fast.json | |
[1136/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_nrntest_fast.py | |
[1137/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_partrans.py | |
[1138/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_py2nrnstring.py | |
[1139/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_pycallobject.py | |
[1140/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_pyobj.py | |
[1141/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_swc.py | |
[1142/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_template_err.py | |
[1143/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_units.py | |
[1144/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_vector_api.py | |
[1145/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_version_macros.py | |
[1146/1726] Generating pynrn/basic_tests_py3.10/test/pynrn/test_zptrlist.py | |
[1147/1726] Generating datahandle/datahandle_tests/test/datahandle/test_1.py | |
[1148/1726] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json | |
[1149/1726] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py | |
[1150/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/argpass.mod | |
[1151/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cabpump.mod | |
[1152/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cachan.mod | |
[1153/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacum.mod | |
[1154/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacur.mod | |
[1155/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadif.mod | |
[1156/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadifusl.mod | |
[1157/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagk.mod | |
[1158/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagkftab.mod | |
[1159/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/capmp.mod | |
[1160/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/expsynspine.mod | |
[1161/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fh.mod | |
[1162/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fit1.mod | |
[1163/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/gap.mod | |
[1164/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hh1.mod | |
[1165/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hhvect.mod | |
[1166/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/inatest.mod | |
[1167/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod | |
[1168/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod | |
[1169/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod | |
[1170/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod | |
[1171/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod | |
[1172/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod | |
[1173/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod | |
[1174/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod | |
[1175/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod | |
[1176/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc | |
[1177/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod | |
[1178/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod | |
[1179/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod | |
[1180/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod | |
[1181/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod | |
[1182/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod | |
[1183/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod | |
[1184/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod | |
[1185/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod | |
[1186/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod | |
[1187/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod | |
[1188/1726] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod | |
[1189/1726] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/node.cpp.o | |
[1190/1726] Generating nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f/atest.mod | |
[1191/1726] Building special[-core] for test group hoctests | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f | |
cfiles = | |
Mod files: "./atest.mod" | |
MODOBJS= ./atest.o | |
-> Compiling mod_func.cpp | |
-> NMODL .././atest.mod | |
Translating atest.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f/arm64/atest.cpp | |
Thread Safe | |
-> Compiling atest.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
[1192/1726] Generating hoctests/test_loadbal_hoc/expect_err.hoc | |
[1193/1726] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc | |
[1194/1726] Generating hoctests/perf1_hoc/expect_err.hoc | |
[1195/1726] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc | |
[1196/1726] Generating hoctests/test1_hoc/expect_err.hoc | |
[1197/1726] Generating hoctests/test1_hoc/vardimtests/test1.hoc | |
[1198/1726] Generating hoctests/test2_hoc/expect_err.hoc | |
[1199/1726] Generating hoctests/test2_hoc/vardimtests/test2.hoc | |
[1200/1726] Generating hoctests/test3_hoc/expect_err.hoc | |
[1201/1726] Generating hoctests/test3_hoc/vardimtests/test3.hoc | |
[1202/1726] Generating hoctests/test4_hoc/expect_err.hoc | |
[1203/1726] Generating hoctests/test4_hoc/vardimtests/test4.hoc | |
[1204/1726] Generating hoctests/test5_hoc/expect_err.hoc | |
[1205/1726] Generating hoctests/test5_hoc/vardimtests/test5.hoc | |
[1206/1726] Generating hoctests/test6_hoc/expect_err.hoc | |
[1207/1726] Generating hoctests/test6_hoc/vardimtests/test6.hoc | |
[1208/1726] Generating hoctests/test7_hoc/expect_err.hoc | |
[1209/1726] Generating hoctests/test7_hoc/vardimtests/test7.hoc | |
[1210/1726] Generating hoctests/test8_hoc/expect_err.hoc | |
[1211/1726] Generating hoctests/test8_hoc/vardimtests/test8.hoc | |
[1212/1726] Generating hoctests/test9_hoc/expect_err.hoc | |
[1213/1726] Generating hoctests/test9_hoc/vardimtests/test9.hoc | |
[1214/1726] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py | |
[1215/1726] Generating hoctests/test_kschan_py/tests/test_kschan.json | |
[1216/1726] Generating hoctests/test_kschan_py/tests/test_kschan.py | |
[1217/1726] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json | |
[1218/1726] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py | |
[1219/1726] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py | |
[1220/1726] Generating hoctests/test_shape_py/tests/test_shape.py | |
[1221/1726] Generating hoctests/test1_py/vardimtests/test1.py | |
[1222/1726] Generating hoctests/test2_py/vardimtests/test2.py | |
[1223/1726] Generating hoctests/test9_py/vardimtests/test9.py | |
[1224/1726] Generating nrnivmodl/2a0c36b731e977c40ec4ff97395d1b29104bb7fc70b4d54097cfd25cdaa23515/follower.mod | |
[1225/1726] Generating nrnivmodl/2a0c36b731e977c40ec4ff97395d1b29104bb7fc70b4d54097cfd25cdaa23515/gap.mod | |
[1226/1726] Generating nrnivmodl/2a0c36b731e977c40ec4ff97395d1b29104bb7fc70b4d54097cfd25cdaa23515/name_clashes.mod | |
[1227/1726] Generating nrnivmodl/2a0c36b731e977c40ec4ff97395d1b29104bb7fc70b4d54097cfd25cdaa23515/unitstest.mod | |
[1228/1726] Generating nrnivmodl/2a0c36b731e977c40ec4ff97395d1b29104bb7fc70b4d54097cfd25cdaa23515/version_macros.mod | |
[1229/1726] Building special[-core] for test group parallel | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/2a0c36b731e977c40ec4ff97395d1b29104bb7fc70b4d54097cfd25cdaa23515 | |
cfiles = | |
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o | |
-> NMODL .././gap.mod | |
-> NMODL .././follower.mod | |
-> Compiling mod_func.cpp | |
-> NMODL .././name_clashes.mod | |
Translating gap.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/2a0c36b731e977c40ec4ff97395d1b29104bb7fc70b4d54097cfd25cdaa23515/arm64/gap.cpp | |
Translating follower.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/2a0c36b731e977c40ec4ff97395d1b29104bb7fc70b4d54097cfd25cdaa23515/arm64/follower.cpp | |
Thread Safe | |
Thread Safe | |
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/2a0c36b731e977c40ec4ff97395d1b29104bb7fc70b4d54097cfd25cdaa23515/arm64/name_clashes.cpp | |
Thread Safe | |
-> NMODL .././unitstest.mod | |
-> NMODL .././version_macros.mod | |
-> Compiling follower.cpp | |
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/2a0c36b731e977c40ec4ff97395d1b29104bb7fc70b4d54097cfd25cdaa23515/arm64/unitstest.cpp | |
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/2a0c36b731e977c40ec4ff97395d1b29104bb7fc70b4d54097cfd25cdaa23515/arm64/version_macros.cpp | |
Thread Safe | |
Thread Safe | |
-> Compiling gap.cpp | |
-> Compiling name_clashes.cpp | |
-> Compiling unitstest.cpp | |
-> Compiling version_macros.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
[1230/1726] Generating parallel/subworld/test/parallel_tests/test_subworld.py | |
[1231/1726] Generating parallel/partrans/test/pynrn/test_partrans.py | |
[1232/1726] Generating parallel/netpar/test/pynrn/test_hoc_po.py | |
[1233/1726] Generating parallel/netpar/test/pynrn/test_netpar.py | |
[1234/1726] Generating parallel/bas/test/parallel_tests/test_bas.py | |
[1235/1726] Generating parallel/nrntest_fast/test/pynrn/run_pytest.py | |
[1236/1726] Generating parallel/nrntest_fast/test/pynrn/test_nrntest_fast.json | |
[1237/1726] Generating parallel/nrntest_fast/test/pynrn/test_nrntest_fast.py | |
[1238/1726] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod | |
[1239/1726] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod | |
[1240/1726] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod | |
[1241/1726] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod | |
[1242/1726] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod | |
[1243/1726] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod | |
[1244/1726] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod | |
[1245/1726] Building special[-core] for test group nmodl_tests | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5 | |
cfiles = | |
Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod" | |
MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o | |
-> Compiling mod_func.cpp | |
-> NMODL .././cadif.mod | |
-> NMODL .././disc.mod | |
-> NMODL .././fornetcon.mod | |
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp | |
Thread Safe | |
Translating disc.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp | |
Notice: DISCRETE is not thread safe. | |
Notice: This mechanism cannot be used with CVODE | |
-> NMODL .././hhwatch.mod | |
Translating cadif.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp | |
Thread Safe | |
-> NMODL .././k3st.mod | |
-> NMODL .././table.mod | |
Translating k3st.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp | |
NEURON's CVode method ignores conservation | |
Thread Safe | |
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp | |
Translating table.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp | |
Thread Safe | |
Thread Safe | |
-> NMODL .././variabletypes.mod | |
-> Compiling cadif.cpp | |
-> Compiling disc.cpp | |
Translating variabletypes.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp | |
Thread Safe | |
-> Compiling fornetcon.cpp | |
-> Compiling hhwatch.cpp | |
-> Compiling k3st.cpp | |
-> Compiling table.cpp | |
-> Compiling variabletypes.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
[1246/1726] Generating nmodl_tests/test_table/test/nmodl/test_table.py | |
[1247/1726] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py | |
[1248/1726] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py | |
[1249/1726] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py | |
[1250/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/axial.inc | |
[1251/1726] Building CXX object test/CMakeFiles/testneuron.dir/common/catch2_main.cpp.o | |
[1252/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/axial.mod | |
[1253/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/axial_pp.mod | |
[1254/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/bacur.mod | |
[1255/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/banocur.mod | |
[1256/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/fornetcon.mod | |
[1257/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/invlfire.mod | |
[1258/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/natrans.mod | |
[1259/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/netmove.mod | |
[1260/1726] Linking CXX executable bin/test/testneuron | |
[1261/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/sample.mod | |
[1262/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/unitstest.mod | |
[1263/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/version_macros.mod | |
[1264/1726] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/watchrange.mod | |
[1265/1726] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py | |
[1266/1726] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py | |
[1267/1726] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py | |
[1268/1726] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py | |
[1269/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod | |
[1270/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod | |
[1271/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod | |
[1272/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod | |
[1273/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod | |
[1274/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod | |
[1275/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod | |
[1276/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod | |
[1277/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod | |
[1278/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod | |
[1279/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod | |
[1280/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod | |
[1281/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod | |
[1282/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod | |
[1283/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod | |
[1284/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod | |
[1285/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod | |
[1286/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod | |
[1287/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod | |
[1288/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod | |
[1289/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod | |
[1290/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod | |
[1291/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod | |
[1292/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod | |
[1293/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod | |
[1294/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod | |
[1295/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod | |
[1296/1726] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod | |
[1297/1726] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/common/catch2_main.cpp.o | |
[1298/1726] Linking CXX executable bin/test/nrn-benchmarks | |
[1299/1726] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod | |
[1300/1726] Building special[-core] for test group example_nmodl | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2 | |
cfiles = | |
Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod" | |
MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o | |
-> Compiling mod_func.cpp | |
-> NMODL .././argpass.mod | |
-> NMODL .././cabpump.mod | |
-> NMODL .././cachan.mod | |
Translating argpass.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp | |
Notice: VERBATIM blocks are not thread safe | |
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp | |
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
Translating cachan.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp | |
-> NMODL .././cacum.mod | |
Thread Safe | |
-> NMODL .././cacur.mod | |
-> NMODL .././cadif.mod | |
Translating cacum.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp | |
Thread Safe | |
Translating cacur.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp | |
Thread Safe | |
-> NMODL .././cadifusl.mod | |
Translating cadif.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp | |
-> NMODL .././cagk.mod | |
Thread Safe | |
-> NMODL .././cagkftab.mod | |
Translating cagk.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp | |
Translating cadifusl.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp | |
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
Thread Safe | |
-> NMODL .././capmp.mod | |
-> NMODL .././expsynspine.mod | |
Translating cagkftab.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp | |
Thread Safe | |
-> NMODL .././fh.mod | |
Translating expsynspine.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp | |
Notice: LINEAR is not thread safe. | |
Translating capmp.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp | |
NEURON's CVode method ignores conservation | |
Thread Safe | |
-> NMODL .././fit1.mod | |
-> NMODL .././gap.mod | |
Translating fh.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp | |
INCLUDEing standard.inc | |
Notice: Assignment to the GLOBAL variable, "inf", is not thread safe | |
Notice: Assignment to the GLOBAL variable, "tau", is not thread safe | |
-> NMODL .././hh1.mod | |
Translating fit1.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp | |
Notice: VERBATIM blocks are not thread safe | |
-> NMODL .././hhvect.mod | |
Translating gap.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp | |
Notice: Use of POINTER is not thread safe. | |
Translating hh1.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp | |
Notice: This mechanism cannot be used with CVODE | |
Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe | |
Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe | |
Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe | |
Notice: Assignment to the GLOBAL variable, "minf", is not thread safe | |
Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe | |
Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe | |
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON. | |
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON. | |
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON. | |
-> NMODL .././inatest.mod | |
-> NMODL .././ionleak.mod | |
-> NMODL .././nacum.mod | |
Translating hhvect.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp | |
Notice: This mechanism cannot be used with CVODE | |
Thread Safe | |
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON. | |
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON. | |
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON. | |
-> NMODL .././nacur.mod | |
Translating ionleak.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp | |
Thread Safe | |
Translating inatest.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp | |
Thread Safe | |
Translating nacum.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp | |
Thread Safe | |
-> NMODL .././nadifl.mod | |
-> NMODL .././nonlin.mod | |
-> NMODL .././obj_ex.mod | |
Translating nacur.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp | |
Thread Safe | |
Translating nadifl.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp | |
-> NMODL .././order.mod | |
Thread Safe | |
Translating nonlin.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp | |
Notice: NONLINEAR is not thread safe. | |
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
only affects and is affected by discrete events. As such it is not | |
located in a section and is not associated with an integrator | |
Translating obj_ex.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp | |
Thread Safe | |
-> NMODL .././passiv.mod | |
-> NMODL .././rchan.mod | |
-> NMODL .././stim1.mod | |
Translating order.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp | |
Thread Safe | |
-> NMODL .././str.mod | |
Translating passiv.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp | |
Thread Safe | |
Translating rchan.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp | |
Notice: normrand is not thread safe | |
Notice: This mechanism cannot be used with CVODE | |
Translating stim1.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp | |
-> NMODL .././syn1.mod | |
Thread Safe | |
-> NMODL .././synpre.mod | |
-> NMODL .././trivial.mod | |
Translating str.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp | |
Notice: VERBATIM blocks are not thread safe | |
Translating syn1.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp | |
Thread Safe | |
-> NMODL .././tstdarray.mod | |
Translating synpre.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp | |
Notice: Use of POINTER is not thread safe. | |
Notice: VERBATIM blocks are not thread safe | |
Notice: This mechanism cannot be used with CVODE | |
-> NMODL .././tstextrn.mod | |
Translating trivial.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp | |
-> NMODL .././tstpnt1.mod | |
-> NMODL .././tstpnt2.mod | |
Translating tstdarray.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp | |
Thread Safe | |
Translating tstextrn.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp | |
Notice: Use of EXTERNAL is not thread safe. | |
-> NMODL .././tstvec.mod | |
Translating tstpnt1.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp | |
Notice: Use of POINTER is not thread safe. | |
-> NMODL .././vclmp1.mod | |
-> NMODL .././vlag.mod | |
Translating tstpnt2.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp | |
Notice: Use of POINTER is not thread safe. | |
-> Compiling argpass.cpp | |
Translating tstvec.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp | |
Notice: VERBATIM blocks are not thread safe | |
Translating vclmp1.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp | |
Notice: VERBATIM blocks are not thread safe | |
Notice: This mechanism cannot be used with CVODE | |
Notice: LINEAR is not thread safe. | |
-> Compiling cabpump.cpp | |
-> Compiling cachan.cpp | |
Translating vlag.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp | |
Thread Safe | |
-> Compiling cacum.cpp | |
-> Compiling cacur.cpp | |
-> Compiling cadif.cpp | |
-> Compiling cadifusl.cpp | |
-> Compiling cagk.cpp | |
-> Compiling cagkftab.cpp | |
-> Compiling capmp.cpp | |
-> Compiling expsynspine.cpp | |
-> Compiling fh.cpp | |
-> Compiling fit1.cpp | |
-> Compiling gap.cpp | |
-> Compiling hh1.cpp | |
-> Compiling hhvect.cpp | |
-> Compiling inatest.cpp | |
-> Compiling ionleak.cpp | |
-> Compiling nacum.cpp | |
-> Compiling nacur.cpp | |
-> Compiling nadifl.cpp | |
-> Compiling nonlin.cpp | |
-> Compiling obj_ex.cpp | |
-> Compiling order.cpp | |
-> Compiling passiv.cpp | |
-> Compiling rchan.cpp | |
-> Compiling stim1.cpp | |
-> Compiling str.cpp | |
-> Compiling syn1.cpp | |
-> Compiling synpre.cpp | |
-> Compiling trivial.cpp | |
-> Compiling tstdarray.cpp | |
-> Compiling tstextrn.cpp | |
-> Compiling tstpnt1.cpp | |
-> Compiling tstpnt2.cpp | |
-> Compiling tstvec.cpp | |
-> Compiling vclmp1.cpp | |
-> Compiling vlag.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
[1301/1726] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc | |
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[1317/1726] Generating example_nmodl/nacum_hoc/nacum.hoc | |
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[1328/1726] Generating example_nmodl/passiv_hoc/passiv.hoc | |
[1329/1726] Generating example_nmodl/stim1_hoc/stim1.hoc | |
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[1335/1726] Generating example_nmodl/tstvec_hoc/tstvec.hoc | |
[1336/1726] Generating example_nmodl/cagkftab_py/cagkftab.py | |
[1337/1726] Generating example_nmodl/expsynspine_py/expsynspine.py | |
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[1339/1726] Generating example_nmodl/nonlin_py/nonlin.py | |
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[1343/1726] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod | |
[1344/1726] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod | |
[1345/1726] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod | |
[1346/1726] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod | |
[1347/1726] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod | |
[1348/1726] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod | |
[1349/1726] Building special[-core] for test group external_ringtest | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff | |
cfiles = | |
Mod files: "./halfgap.mod" | |
MODOBJS= ./halfgap.o | |
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
Default NMODL flags: | |
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
[NMODL] [info] :: Running symtab visitor | |
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[NMODL] [info] :: Running semantic analysis visitor | |
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[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/halfgap.mod | |
[NMODL] [info] :: Running symtab visitor | |
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[NMODL] [info] :: Parsing Units | |
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
[NMODL] [info] :: Running symtab visitor | |
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[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
[NMODL] [info] :: Running symtab visitor | |
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[NMODL] [info] :: Running CVode to cnexp visitor | |
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[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
[NMODL] [info] :: Running verbatim rename visitor | |
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[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
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[NMODL] [info] :: Parsing Units | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
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[NMODL] [info] :: Running C backend code generator | |
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[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
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[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> Binary creating arm64/special-core | |
[INFO] MOD files built successfully for CoreNEURON | |
-> Compiling mod_func.cpp | |
-> NMODL .././halfgap.mod | |
Translating halfgap.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp | |
Thread Safe | |
-> Compiling halfgap.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
[1350/1726] Generating ../../external_ringtest/neuron/args.py | |
[1351/1726] Generating ../../external_ringtest/neuron/cell.hoc | |
[1352/1726] Generating ../../external_ringtest/neuron/celluniform.hoc | |
[1353/1726] Generating ../../external_ringtest/neuron/commonutils.py | |
[1354/1726] Generating ../../external_ringtest/neuron/ranparm.py | |
[1355/1726] Generating ../../external_ringtest/neuron/ring.py | |
[1356/1726] Generating ../../external_ringtest/neuron/ringtest.py | |
[1357/1726] Generating ../../external_ringtest/neuron/ringuniform.py | |
[1358/1726] Generating ../../external_ringtest/neuron/settings.py | |
[1359/1726] Generating ../../external_ringtest/neuron_mpi/args.py | |
[1360/1726] Generating ../../external_ringtest/neuron_mpi/cell.hoc | |
[1361/1726] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc | |
[1362/1726] Generating ../../external_ringtest/neuron_mpi/commonutils.py | |
[1363/1726] Generating ../../external_ringtest/neuron_mpi/ranparm.py | |
[1364/1726] Generating ../../external_ringtest/neuron_mpi/ring.py | |
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[1367/1726] Generating ../../external_ringtest/neuron_mpi/settings.py | |
[1368/1726] Generating ../../external_ringtest/neuron_mpi_python/args.py | |
[1369/1726] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc | |
[1370/1726] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc | |
[1371/1726] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py | |
[1372/1726] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py | |
[1373/1726] Generating ../../external_ringtest/neuron_mpi_python/ring.py | |
[1374/1726] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py | |
[1375/1726] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py | |
[1376/1726] Generating ../../external_ringtest/neuron_mpi_python/settings.py | |
[1377/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py | |
[1378/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc | |
[1379/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc | |
[1380/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py | |
[1381/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py | |
[1382/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py | |
[1383/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py | |
[1384/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py | |
[1385/1726] Building CXX object test/coreneuron/unit/cmdline_interface/CMakeFiles/cmd_interface_test_bin.dir/test_cmdline_interface.cpp.o | |
[1386/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py | |
[1387/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py | |
[1388/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc | |
[1389/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc | |
[1390/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py | |
[1391/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py | |
[1392/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py | |
[1393/1726] Linking CXX executable bin/cmd_interface_test_bin | |
[1394/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py | |
[1395/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py | |
[1396/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py | |
[1397/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py | |
[1398/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc | |
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[1400/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py | |
[1401/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py | |
[1402/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py | |
[1403/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py | |
[1404/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py | |
[1405/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py | |
[1406/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py | |
[1407/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc | |
[1408/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc | |
[1409/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py | |
[1410/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py | |
[1411/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py | |
[1412/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py | |
[1413/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py | |
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[1415/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py | |
[1416/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc | |
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[1418/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py | |
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[1420/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py | |
[1421/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py | |
[1422/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py | |
[1423/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py | |
[1424/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py | |
[1425/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc | |
[1426/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc | |
[1427/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py | |
[1428/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py | |
[1429/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py | |
[1430/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py | |
[1431/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py | |
[1432/1726] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py | |
[1433/1726] Building CXX object test/coreneuron/unit/interleave_info/CMakeFiles/interleave_info_bin.dir/check_constructors.cpp.o | |
[1434/1726] Linking CXX executable bin/interleave_info_bin | |
[1435/1726] Building CXX object test/coreneuron/unit/queueing/CMakeFiles/queuing_test_bin.dir/test_queueing.cpp.o | |
[1436/1726] Linking CXX executable bin/queuing_test_bin | |
[1437/1726] Building CXX object test/coreneuron/unit/alignment/CMakeFiles/alignment_test_bin.dir/alignment.cpp.o | |
[1438/1726] Linking CXX executable bin/alignment_test_bin | |
[1439/1726] Building CXX object test/coreneuron/unit/solver/CMakeFiles/test-solver.dir/test_solver.cpp.o | |
[1440/1726] Building special[-core] for test group coreneuron_modtests | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056 | |
cfiles = | |
Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod" | |
MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./invlfire.o ./natrans.o ./netmove.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o | |
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
Default NMODL flags: | |
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial_pp.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bacur.mod | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/banocur.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/fornetcon.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfire.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/natrans.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netmove.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/sample.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/watchrange.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> Binary creating arm64/special-core | |
[INFO] MOD files built successfully for CoreNEURON | |
-> Compiling mod_func.cpp | |
-> NMODL .././axial.mod | |
-> NMODL .././bacur.mod | |
-> NMODL .././axial_pp.mod | |
Translating axial.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/axial.cpp | |
INCLUDEing axial.inc | |
Translating axial_pp.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/axial_pp.cpp | |
INCLUDEing axial.inc | |
Translating bacur.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/bacur.cpp | |
Thread Safe | |
Thread Safe | |
Thread Safe | |
-> NMODL .././banocur.mod | |
-> NMODL .././fornetcon.mod | |
-> NMODL .././invlfire.mod | |
Translating banocur.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/banocur.cpp | |
Notice: This mechanism cannot be used with CVODE | |
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/fornetcon.cpp | |
Thread Safe | |
Thread Safe | |
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/invlfire.cpp | |
Thread Safe | |
-> NMODL .././natrans.mod | |
-> NMODL .././netmove.mod | |
-> NMODL .././sample.mod | |
Translating natrans.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/natrans.cpp | |
Thread Safe | |
Translating netmove.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/netmove.cpp | |
Thread Safe | |
Translating sample.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/sample.cpp | |
Thread Safe | |
-> NMODL .././unitstest.mod | |
-> NMODL .././version_macros.mod | |
-> NMODL .././watchrange.mod | |
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/unitstest.cpp | |
Thread Safe | |
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/version_macros.cpp | |
Thread Safe | |
Translating watchrange.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/watchrange.cpp | |
-> Compiling axial.cpp | |
-> Compiling axial_pp.cpp | |
Thread Safe | |
-> Compiling bacur.cpp | |
-> Compiling banocur.cpp | |
-> Compiling fornetcon.cpp | |
-> Compiling invlfire.cpp | |
-> Compiling natrans.cpp | |
-> Compiling netmove.cpp | |
-> Compiling sample.cpp | |
-> Compiling unitstest.cpp | |
-> Compiling version_macros.cpp | |
-> Compiling watchrange.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
[1441/1726] Generating coreneuron_modtests/version_macros/test/pynrn/test_version_macros.py | |
[1442/1726] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py | |
[1443/1726] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py | |
[1444/1726] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc | |
[1445/1726] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py | |
[1446/1726] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py | |
[1447/1726] Generating coreneuron_modtests/fast_imem_py_cpu/test/pynrn/test_fast_imem.py | |
[1448/1726] Linking CXX executable bin/test-solver | |
[1449/1726] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py | |
[1450/1726] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py | |
[1451/1726] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py | |
[1452/1726] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py | |
[1453/1726] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py | |
[1454/1726] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py | |
[1455/1726] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py | |
[1456/1726] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py | |
[1457/1726] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py | |
[1458/1726] Generating coreneuron_modtests/inputpresyn_py_cpu/test/coreneuron/test_spikes.py | |
[1459/1726] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py | |
[1460/1726] Building CXX object test/coreneuron/unit/lfp/CMakeFiles/lfp_test_bin.dir/lfp.cpp.o | |
[1461/1726] Linking CXX executable bin/lfp_test_bin | |
[1462/1726] Building special[-core] for test group testcorenrn_bbcore | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876 | |
cfiles = | |
Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod" | |
MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o | |
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
Default NMODL flags: | |
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhkin.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhderiv.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse | |
[NMODL] [info] :: Running sympy solve visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhwatch.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nacum.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> Binary creating arm64/special-core | |
[INFO] MOD files built successfully for CoreNEURON | |
-> NMODL .././Gfluct3.mod | |
-> Compiling mod_func.cpp | |
-> NMODL .././hhderiv.mod | |
-> NMODL .././hhkin.mod | |
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp | |
Translating hhderiv.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp | |
Thread Safe | |
Thread Safe | |
Translating hhkin.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp | |
Thread Safe | |
-> NMODL .././hhwatch.mod | |
-> NMODL .././nacum.mod | |
-> NMODL .././vecevent.mod | |
Translating nacum.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp | |
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp | |
Thread Safe | |
Thread Safe | |
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp | |
Thread Safe | |
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
only affects and is affected by discrete events. As such it is not | |
located in a section and is not associated with an integrator | |
-> Compiling Gfluct3.cpp | |
-> Compiling hhderiv.cpp | |
-> Compiling hhkin.cpp | |
-> Compiling hhwatch.cpp | |
-> Compiling nacum.cpp | |
-> Compiling vecevent.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
[1463/1726] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc | |
[1464/1726] Generating ../../testcorenrn_bbcore/neuron/common.hoc | |
[1465/1726] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc | |
[1466/1726] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1467/1726] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc | |
[1468/1726] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc | |
[1469/1726] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc | |
[1470/1726] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1471/1726] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc | |
[1472/1726] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc | |
[1473/1726] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc | |
[1474/1726] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc | |
[1475/1726] Generating ../../testcorenrn_conc/neuron/common.hoc | |
[1476/1726] Generating ../../testcorenrn_conc/neuron/defvar.hoc | |
[1477/1726] Generating ../../testcorenrn_conc/neuron/testconc.hoc | |
[1478/1726] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc | |
[1479/1726] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc | |
[1480/1726] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc | |
[1481/1726] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1482/1726] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1483/1726] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc | |
[1484/1726] Generating ../../testcorenrn_deriv/neuron/common.hoc | |
[1485/1726] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc | |
[1486/1726] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc | |
[1487/1726] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc | |
[1488/1726] Generating ../../testcorenrn_deriv/neuron/defvar.hoc | |
[1489/1726] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc | |
[1490/1726] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc | |
[1491/1726] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc | |
[1492/1726] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc | |
[1493/1726] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1494/1726] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1495/1726] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc | |
[1496/1726] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc | |
[1497/1726] Generating ../../testcorenrn_gf/neuron/common.hoc | |
[1498/1726] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc | |
[1499/1726] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc | |
[1500/1726] Generating ../../testcorenrn_gf/neuron/defvar.hoc | |
[1501/1726] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1502/1726] Generating ../../testcorenrn_gf/neuron/testgf.hoc | |
[1503/1726] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc | |
[1504/1726] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc | |
[1505/1726] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc | |
[1506/1726] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc | |
[1507/1726] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1508/1726] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc | |
[1509/1726] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc | |
[1510/1726] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc | |
[1511/1726] Generating ../../testcorenrn_kin/neuron/common.hoc | |
[1512/1726] Generating ../../testcorenrn_kin/neuron/testkin.hoc | |
[1513/1726] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc | |
[1514/1726] Generating ../../testcorenrn_kin/neuron/defvar.hoc | |
[1515/1726] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc | |
[1516/1726] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc | |
[1517/1726] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1518/1726] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1519/1726] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc | |
[1520/1726] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc | |
[1521/1726] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc | |
[1522/1726] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc | |
[1523/1726] Generating ../../testcorenrn_patstim/neuron/common.hoc | |
[1524/1726] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc | |
[1525/1726] Generating ../../testcorenrn_patstim/neuron/defvar.hoc | |
[1526/1726] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc | |
[1527/1726] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc | |
[1528/1726] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc | |
[1529/1726] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc | |
[1530/1726] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc | |
[1531/1726] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc | |
[1532/1726] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc | |
[1533/1726] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc | |
[1534/1726] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc | |
[1535/1726] Generating ../../testcorenrn_vecplay/neuron/common.hoc | |
[1536/1726] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc | |
[1537/1726] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc | |
[1538/1726] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1539/1726] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc | |
[1540/1726] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1541/1726] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc | |
[1542/1726] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc | |
[1543/1726] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc | |
[1544/1726] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc | |
[1545/1726] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc | |
[1546/1726] Generating ../../testcorenrn_vecevent/neuron/common.hoc | |
[1547/1726] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc | |
[1548/1726] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc | |
[1549/1726] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc | |
[1550/1726] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1551/1726] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1552/1726] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc | |
[1553/1726] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc | |
[1554/1726] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc | |
[1555/1726] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc | |
[1556/1726] Generating ../../testcorenrn_watch/neuron/common.hoc | |
[1557/1726] Generating ../../testcorenrn_watch/neuron/defvar.hoc | |
[1558/1726] Generating ../../testcorenrn_watch/neuron/testwatch.hoc | |
[1559/1726] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc | |
[1560/1726] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc | |
[1561/1726] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc | |
[1562/1726] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc | |
[1563/1726] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc | |
[1564/1726] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
[1565/1726] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc | |
[1566/1726] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc | |
[1567/1726] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc | |
[1568/1726] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc | |
[1569/1726] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc | |
[1570/1726] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc | |
[1571/1726] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc | |
[1572/1726] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc | |
[1573/1726] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc | |
[1574/1726] Building special[-core] for test group reduced_dentate | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead | |
cfiles = | |
Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod" | |
MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o | |
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
Default NMODL flags: | |
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_CadepK.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Ca.mod | |
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KA.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRf.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRs.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Na.mod | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/CaBK.mod | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_sAHP.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_M.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_UK.mod | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [warning] :: Can not inline function call to mynormrand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/LcaMig.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_KIn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_na8st.mod | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse | |
[NMODL] [info] :: Running sympy solve visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bgka.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ccanl.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ggap.mod | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gskch.mod | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/holdingi.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hyperde3.mod | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ichan2.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/iconc_Ca.mod | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/kcaPR.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/na3n.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nca.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [warning] :: Can not inline function call to erand | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/spines.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/tca.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod | |
[NMODL] [info] :: Running symtab visitor | |
[NMODL] [info] :: Running semantic analysis visitor | |
[NMODL] [info] :: Running CVode to cnexp visitor | |
[NMODL] [info] :: Running code compatibility checker | |
[NMODL] [info] :: Running verbatim rename visitor | |
[NMODL] [info] :: Running KINETIC block visitor | |
[NMODL] [info] :: Running STEADYSTATE visitor | |
[NMODL] [info] :: Parsing Units | |
[NMODL] [info] :: Running nmodl inline visitor | |
[NMODL] [info] :: Running local variable rename visitor | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
[NMODL] [info] :: Running cnexp visitor | |
[NMODL] [info] :: Running C backend code generator | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> Binary creating arm64/special-core | |
[INFO] MOD files built successfully for CoreNEURON | |
-> Compiling mod_func.cpp | |
-> NMODL .././Aradi_Ca.mod | |
-> NMODL .././Aradi_KA.mod | |
-> NMODL .././Aradi_CadepK.mod | |
Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp | |
Translating Aradi_KA.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp | |
Thread Safe | |
Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp | |
Thread Safe | |
Thread Safe | |
-> NMODL .././Aradi_KDRs.mod | |
-> NMODL .././Aradi_KDRf.mod | |
-> NMODL .././Aradi_Na.mod | |
Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp | |
Thread Safe | |
Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp | |
Thread Safe | |
Translating Aradi_Na.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp | |
Thread Safe | |
-> NMODL .././CaBK.mod | |
-> NMODL .././DGC_M.mod | |
-> NMODL .././DGC_UK.mod | |
Translating CaBK.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp | |
Thread Safe | |
Translating DGC_UK.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp | |
Translating DGC_M.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp | |
Thread Safe | |
-> NMODL .././DGC_sAHP.mod | |
Thread Safe | |
-> NMODL .././LcaMig.mod | |
-> NMODL .././Gfluct3.mod | |
Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp | |
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp | |
Translating LcaMig.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp | |
Thread Safe | |
Thread Safe | |
Thread Safe | |
-> NMODL .././SH_KIn.mod | |
-> NMODL .././SH_na8st.mod | |
-> NMODL .././bgka.mod | |
-> NMODL .././ccanl.mod | |
Translating SH_KIn.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp | |
Thread Safe | |
Translating bgka.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp | |
Translating SH_na8st.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp | |
Thread Safe | |
NEURON's CVode method ignores conservation | |
Thread Safe | |
-> NMODL .././ggap.mod | |
-> NMODL .././gskch.mod | |
Translating ccanl.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp | |
Thread Safe | |
-> NMODL .././holdingi.mod | |
-> NMODL .././hyperde3.mod | |
Translating ggap.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp | |
Thread Safe | |
Translating gskch.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp | |
Thread Safe | |
-> NMODL .././ichan2.mod | |
Translating holdingi.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp | |
Thread Safe | |
-> NMODL .././iconc_Ca.mod | |
-> NMODL .././kcaPR.mod | |
Translating hyperde3.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp | |
Thread Safe | |
-> NMODL .././na3n.mod | |
Translating ichan2.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp | |
Thread Safe | |
Translating iconc_Ca.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp | |
-> NMODL .././nca.mod | |
Thread Safe | |
Translating kcaPR.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp | |
Thread Safe | |
-> NMODL .././spines.mod | |
Translating na3n.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp | |
Thread Safe | |
-> NMODL .././tca.mod | |
-> NMODL .././vecevent.mod | |
Translating nca.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp | |
Thread Safe | |
-> Compiling Aradi_Ca.cpp | |
Translating spines.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp | |
Thread Safe | |
Translating tca.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp | |
Thread Safe | |
-> Compiling Aradi_CadepK.cpp | |
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp | |
Thread Safe | |
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
only affects and is affected by discrete events. As such it is not | |
located in a section and is not associated with an integrator | |
-> Compiling Aradi_KA.cpp | |
-> Compiling Aradi_KDRf.cpp | |
-> Compiling Aradi_KDRs.cpp | |
-> Compiling Aradi_Na.cpp | |
-> Compiling CaBK.cpp | |
-> Compiling DGC_M.cpp | |
-> Compiling DGC_UK.cpp | |
-> Compiling DGC_sAHP.cpp | |
-> Compiling Gfluct3.cpp | |
-> Compiling LcaMig.cpp | |
-> Compiling SH_KIn.cpp | |
-> Compiling SH_na8st.cpp | |
-> Compiling bgka.cpp | |
-> Compiling ccanl.cpp | |
-> Compiling ggap.cpp | |
-> Compiling gskch.cpp | |
-> Compiling holdingi.cpp | |
-> Compiling hyperde3.cpp | |
-> Compiling ichan2.cpp | |
-> Compiling iconc_Ca.cpp | |
-> Compiling kcaPR.cpp | |
-> Compiling na3n.cpp | |
-> Compiling nca.cpp | |
-> Compiling spines.cpp | |
-> Compiling tca.cpp | |
-> Compiling vecevent.cpp | |
=> LINKING shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
[1575/1726] Generating ../../reduced_dentate/neuron/commonutils.py | |
[1576/1726] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat | |
[1577/1726] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat | |
[1578/1726] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat | |
[1579/1726] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat | |
[1580/1726] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat | |
[1581/1726] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat | |
[1582/1726] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat | |
[1583/1726] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat | |
[1584/1726] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat | |
[1585/1726] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat | |
[1586/1726] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat | |
[1587/1726] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat | |
[1588/1726] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat | |
[1589/1726] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat | |
[1590/1726] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat | |
[1591/1726] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat | |
[1592/1726] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat | |
[1593/1726] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat | |
[1594/1726] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat | |
[1595/1726] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat | |
[1596/1726] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat | |
[1597/1726] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat | |
[1598/1726] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat | |
[1599/1726] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat | |
[1600/1726] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat | |
[1601/1726] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat | |
[1602/1726] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat | |
[1603/1726] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat | |
[1604/1726] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat | |
[1605/1726] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat | |
[1606/1726] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat | |
[1607/1726] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat | |
[1608/1726] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat | |
[1609/1726] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat | |
[1610/1726] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat | |
[1611/1726] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat | |
[1612/1726] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat | |
[1613/1726] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat | |
[1614/1726] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat | |
[1615/1726] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat | |
[1616/1726] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat | |
[1617/1726] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat | |
[1618/1726] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat | |
[1619/1726] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat | |
[1620/1726] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat | |
[1621/1726] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat | |
[1622/1726] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat | |
[1623/1726] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat | |
[1624/1726] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat | |
[1625/1726] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat | |
[1626/1726] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat | |
[1627/1726] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat | |
[1628/1726] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat | |
[1629/1726] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat | |
[1630/1726] Generating ../../reduced_dentate/neuron/lib.hoc | |
[1631/1726] Generating ../../reduced_dentate/neuron/main.hoc | |
[1632/1726] Generating ../../reduced_dentate/neuron/parameters/Control.hoc | |
[1633/1726] Generating ../../reduced_dentate/neuron/templates/DGC.hoc | |
[1634/1726] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc | |
[1635/1726] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc | |
[1636/1726] Generating ../../reduced_dentate/neuron/run.hoc | |
[1637/1726] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc | |
[1638/1726] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc | |
[1639/1726] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc | |
[1640/1726] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc | |
[1641/1726] Generating ../../reduced_dentate/neuron/templates/Dict.hoc | |
[1642/1726] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc | |
[1643/1726] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc | |
[1644/1726] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc | |
[1645/1726] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc | |
[1646/1726] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc | |
[1647/1726] Generating ../../reduced_dentate/neuron/templates/Value.hoc | |
[1648/1726] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc | |
[1649/1726] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc | |
[1650/1726] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py | |
[1651/1726] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat | |
[1652/1726] Generating ../../reduced_dentate/neuron/templates/defvar.hoc | |
[1653/1726] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat | |
[1654/1726] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat | |
[1655/1726] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat | |
[1656/1726] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat | |
[1657/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat | |
[1658/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat | |
[1659/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat | |
[1660/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat | |
[1661/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat | |
[1662/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat | |
[1663/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat | |
[1664/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat | |
[1665/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat | |
[1666/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat | |
[1667/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat | |
[1668/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat | |
[1669/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat | |
[1670/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat | |
[1671/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat | |
[1672/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat | |
[1673/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat | |
[1674/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat | |
[1675/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat | |
[1676/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat | |
[1677/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat | |
[1678/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat | |
[1679/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat | |
[1680/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat | |
[1681/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat | |
[1682/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat | |
[1683/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat | |
[1684/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat | |
[1685/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat | |
[1686/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat | |
[1687/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat | |
[1688/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat | |
[1689/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat | |
[1690/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat | |
[1691/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat | |
[1692/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat | |
[1693/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat | |
[1694/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat | |
[1695/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat | |
[1696/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat | |
[1697/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat | |
[1698/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat | |
[1699/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat | |
[1700/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat | |
[1701/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat | |
[1702/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat | |
[1703/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat | |
[1704/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat | |
[1705/1726] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc | |
[1706/1726] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat | |
[1707/1726] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc | |
[1708/1726] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc | |
[1709/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc | |
[1710/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc | |
[1711/1726] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc | |
[1712/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc | |
[1713/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc | |
[1714/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc | |
[1715/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc | |
[1716/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc | |
[1717/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc | |
[1718/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc | |
[1719/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc | |
[1720/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc | |
[1721/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc | |
[1722/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc | |
[1723/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc | |
[1724/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc | |
[1725/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc | |
[1726/1726] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc | |
[32;1m$ ccache -vs 2>/dev/null[0;m | |
Cache directory: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/ccache | |
Config file: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/ccache/ccache.conf | |
System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf | |
Stats updated: Tue Jun 6 11:00:48 2023 | |
Cacheable calls: 574 / 574 (100.0%) | |
Hits: 0 / 574 ( 0.00%) | |
Direct: 0 | |
Preprocessed: 0 | |
Misses: 574 / 574 (100.0%) | |
Successful lookups: | |
Direct: 0 / 574 ( 0.00%) | |
Preprocessed: 0 / 574 ( 0.00%) | |
Local storage: | |
Cache size (GB): 0.13 / 5.00 ( 2.57%) | |
Files: 1079 | |
Hits: 0 / 574 ( 0.00%) | |
Misses: 574 / 574 (100.0%) | |
Reads: 1148 | |
Writes: 1081 | |
[32;1m$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg[0;m | |
[32;1m$ cat src/nrnpython/setup.cfg[0;m | |
[install] | |
prefix= | |
[32;1m$ ctest --output-on-failure[0;m | |
Test project /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build | |
Start 212: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
Start 220: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
1/271 Test #220: testcorenrn_bbcore::coreneuron_cpu_offline::preparation .................. Passed 1.05 sec | |
Start 226: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
2/271 Test #226: testcorenrn_conc::coreneuron_cpu_offline::preparation .................... Passed 0.30 sec | |
Start 232: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
3/271 Test #212: external_ringtest::coreneuron_cpu_mpi_offline::preparation ............... Passed 1.43 sec | |
Start 238: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
4/271 Test #232: testcorenrn_deriv::coreneuron_cpu_offline::preparation ................... Passed 0.29 sec | |
Start 244: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
5/271 Test #238: testcorenrn_gf::coreneuron_cpu_offline::preparation ...................... Passed 0.31 sec | |
Start 249: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
6/271 Test #244: testcorenrn_kin::coreneuron_cpu_offline::preparation ..................... Passed 0.29 sec | |
Start 131: pyinit::nrniv_py3.10_python_check_sys_path::preparation | |
7/271 Test #131: pyinit::nrniv_py3.10_python_check_sys_path::preparation .................. Passed 0.02 sec | |
Start 133: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation | |
8/271 Test #133: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ............... Passed 0.02 sec | |
Start 135: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation | |
9/271 Test #135: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................ Passed 0.02 sec | |
Start 137: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation | |
10/271 Test #137: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation ............. Passed 0.02 sec | |
Start 139: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation | |
11/271 Test #139: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ........... Passed 0.02 sec | |
Start 141: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation | |
12/271 Test #141: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........ Passed 0.02 sec | |
Start 143: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation | |
13/271 Test #249: testcorenrn_patstim::coreneuron_cpu_offline::preparation ................. Passed 0.32 sec | |
Start 255: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
14/271 Test #143: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ........... Passed 0.02 sec | |
Start 145: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation | |
15/271 Test #145: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........ Passed 0.02 sec | |
Start 147: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation | |
16/271 Test #147: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ...... Passed 0.02 sec | |
Start 149: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation | |
17/271 Test #149: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ... Passed 0.02 sec | |
Start 151: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation | |
18/271 Test #151: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation ....... Passed 0.02 sec | |
Start 153: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation | |
19/271 Test #153: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation .... Passed 0.02 sec | |
Start 155: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation | |
20/271 Test #155: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........ Passed 0.02 sec | |
Start 157: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation | |
21/271 Test #157: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation ..... Passed 0.02 sec | |
Start 159: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation | |
22/271 Test #159: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation ....... Passed 0.02 sec | |
Start 161: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation | |
23/271 Test #161: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation .... Passed 0.02 sec | |
Start 167: pyinit::nrniv_pydef_python_check_sys_path::preparation | |
24/271 Test #167: pyinit::nrniv_pydef_python_check_sys_path::preparation ................... Passed 0.02 sec | |
Start 169: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation | |
25/271 Test #169: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................ Passed 0.02 sec | |
Start 171: pyinit::nrniv_pydef_python_check_sys_prefix::preparation | |
26/271 Test #171: pyinit::nrniv_pydef_python_check_sys_prefix::preparation ................. Passed 0.02 sec | |
Start 173: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation | |
27/271 Test #173: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation .............. Passed 0.02 sec | |
Start 175: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation | |
28/271 Test #175: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............ Passed 0.02 sec | |
Start 177: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation | |
29/271 Test #255: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ................. Passed 0.30 sec | |
Start 267: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
30/271 Test #177: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation ......... Passed 0.02 sec | |
Start 179: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation | |
31/271 Test #179: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............ Passed 0.02 sec | |
Start 181: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation | |
32/271 Test #181: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation ......... Passed 0.02 sec | |
Start 183: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation | |
33/271 Test #183: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation ....... Passed 0.02 sec | |
Start 185: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation | |
34/271 Test #185: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation .... Passed 0.02 sec | |
Start 187: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation | |
35/271 Test #187: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........ Passed 0.02 sec | |
Start 189: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation | |
36/271 Test #189: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation ..... Passed 0.02 sec | |
Start 191: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation | |
37/271 Test #191: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation ......... Passed 0.02 sec | |
Start 193: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation | |
38/271 Test #193: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ...... Passed 0.02 sec | |
Start 195: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation | |
39/271 Test #195: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........ Passed 0.02 sec | |
Start 197: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation | |
40/271 Test #197: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation ..... Passed 0.02 sec | |
Start 205: external_ringtest::neuron | |
41/271 Test #267: testcorenrn_watch::coreneuron_cpu_offline::preparation ................... Passed 0.30 sec | |
Start 206: external_ringtest::neuron_mpi | |
42/271 Test #206: external_ringtest::neuron_mpi ............................................ Passed 2.33 sec | |
Start 207: external_ringtest::neuron_mpi_python | |
43/271 Test #205: external_ringtest::neuron ................................................ Passed 4.13 sec | |
Start 216: testcorenrn_bbcore::neuron | |
44/271 Test #216: testcorenrn_bbcore::neuron ............................................... Passed 0.30 sec | |
Start 217: testcorenrn_bbcore::coreneuron_cpu_online | |
45/271 Test #217: testcorenrn_bbcore::coreneuron_cpu_online ................................ Passed 0.55 sec | |
Start 218: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
46/271 Test #207: external_ringtest::neuron_mpi_python ..................................... Passed 2.84 sec | |
Start 208: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
47/271 Test #218: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ............... Passed 0.63 sec | |
Start 219: testcorenrn_bbcore::coreneuron_cpu_offline | |
48/271 Test #219: testcorenrn_bbcore::coreneuron_cpu_offline ............................... Passed 0.41 sec | |
Start 222: testcorenrn_conc::neuron | |
49/271 Test #222: testcorenrn_conc::neuron ................................................. Passed 0.32 sec | |
Start 223: testcorenrn_conc::coreneuron_cpu_online | |
50/271 Test #223: testcorenrn_conc::coreneuron_cpu_online .................................. Passed 0.56 sec | |
Start 224: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
51/271 Test #208: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................ Passed 1.81 sec | |
Start 209: external_ringtest::coreneuron_cpu_mpi | |
52/271 Test #224: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ................. Passed 0.62 sec | |
Start 225: testcorenrn_conc::coreneuron_cpu_offline | |
53/271 Test #225: testcorenrn_conc::coreneuron_cpu_offline ................................. Passed 0.26 sec | |
Start 228: testcorenrn_deriv::neuron | |
54/271 Test #209: external_ringtest::coreneuron_cpu_mpi .................................... Passed 0.94 sec | |
Start 210: external_ringtest::coreneuron_cpu_mpi_python | |
55/271 Test #228: testcorenrn_deriv::neuron ................................................ Passed 0.32 sec | |
Start 229: testcorenrn_deriv::coreneuron_cpu_online | |
56/271 Test #229: testcorenrn_deriv::coreneuron_cpu_online ................................. Passed 0.78 sec | |
Start 230: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
57/271 Test #210: external_ringtest::coreneuron_cpu_mpi_python ............................. Passed 1.33 sec | |
Start 211: external_ringtest::coreneuron_cpu_mpi_offline | |
58/271 Test #230: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................ Passed 0.63 sec | |
Start 231: testcorenrn_deriv::coreneuron_cpu_offline | |
59/271 Test #231: testcorenrn_deriv::coreneuron_cpu_offline ................................ Passed 0.26 sec | |
Start 240: testcorenrn_kin::neuron | |
60/271 Test #211: external_ringtest::coreneuron_cpu_mpi_offline ............................ Passed 0.55 sec | |
Start 234: testcorenrn_gf::neuron | |
61/271 Test #240: testcorenrn_kin::neuron .................................................. Passed 0.31 sec | |
Start 241: testcorenrn_kin::coreneuron_cpu_online | |
62/271 Test #241: testcorenrn_kin::coreneuron_cpu_online ................................... Passed 0.57 sec | |
Start 242: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
63/271 Test #242: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate .................. Passed 0.60 sec | |
Start 243: testcorenrn_kin::coreneuron_cpu_offline | |
64/271 Test #243: testcorenrn_kin::coreneuron_cpu_offline .................................. Passed 0.27 sec | |
Start 1: cmd_interface_test | |
65/271 Test #234: testcorenrn_gf::neuron ................................................... Passed 2.00 sec | |
Start 235: testcorenrn_gf::coreneuron_cpu_online | |
66/271 Test #1: cmd_interface_test ....................................................... Passed 0.36 sec | |
Start 2: interleave_info_constructor_test | |
67/271 Test #2: interleave_info_constructor_test ......................................... Passed 0.21 sec | |
Start 3: alignment_test | |
68/271 Test #3: alignment_test ........................................................... Passed 0.25 sec | |
Start 4: queuing_test | |
69/271 Test #235: testcorenrn_gf::coreneuron_cpu_online .................................... Passed 0.70 sec | |
Start 236: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
70/271 Test #4: queuing_test ............................................................. Passed 0.27 sec | |
Start 5: test-solver | |
71/271 Test #5: test-solver .............................................................. Passed 0.63 sec | |
Start 6: lfp_test | |
72/271 Test #6: lfp_test ................................................................. Passed 0.43 sec | |
Start 7: unit_tests::testneuron | |
73/271 Test #7: unit_tests::testneuron ................................................... Passed 0.27 sec | |
Start 8: unit_tests::testneuron_soa_erase_calls_terminate | |
74/271 Test #8: unit_tests::testneuron_soa_erase_calls_terminate ......................... Passed 0.10 sec | |
Start 9: ringtest | |
75/271 Test #236: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ................... Passed 1.74 sec | |
Start 237: testcorenrn_gf::coreneuron_cpu_offline | |
76/271 Test #9: ringtest ................................................................. Passed 0.49 sec | |
Start 10: connect_dend | |
77/271 Test #10: connect_dend ............................................................. Passed 0.15 sec | |
Start 11: mpi_init::nrniv_mpiopt | |
78/271 Test #237: testcorenrn_gf::coreneuron_cpu_offline ................................... Passed 0.39 sec | |
Start 246: testcorenrn_patstim::neuron | |
79/271 Test #11: mpi_init::nrniv_mpiopt ................................................... Passed 0.31 sec | |
Start 12: mpi_init::nrniv_nrnmpi_init | |
80/271 Test #246: testcorenrn_patstim::neuron .............................................. Passed 0.37 sec | |
Start 247: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
81/271 Test #12: mpi_init::nrniv_nrnmpi_init .............................................. Passed 0.32 sec | |
Start 13: mpi_init::python_nrnmpi_init | |
82/271 Test #247: testcorenrn_patstim::coreneuron_cpu_offline_saverestore .................. Passed 0.98 sec | |
Start 248: testcorenrn_patstim::coreneuron_cpu_offline | |
83/271 Test #13: mpi_init::python_nrnmpi_init ............................................. Passed 0.73 sec | |
Start 14: mpi_init::python_mpienv | |
84/271 Test #248: testcorenrn_patstim::coreneuron_cpu_offline .............................. Passed 0.27 sec | |
Start 251: testcorenrn_vecplay::neuron | |
85/271 Test #14: mpi_init::python_mpienv .................................................. Passed 0.67 sec | |
Start 15: mpi_init::nrniv_mpiexec_mpiopt | |
86/271 Test #251: testcorenrn_vecplay::neuron .............................................. Passed 0.48 sec | |
Start 252: testcorenrn_vecplay::coreneuron_cpu_online | |
87/271 Test #15: mpi_init::nrniv_mpiexec_mpiopt ........................................... Passed 0.25 sec | |
Start 16: mpi_init::nrniv_mpiexec_nrnmpi_init | |
88/271 Test #16: mpi_init::nrniv_mpiexec_nrnmpi_init ...................................... Passed 0.26 sec | |
Start 17: mpi_init::python_mpiexec_nrnmpi_init | |
89/271 Test #252: testcorenrn_vecplay::coreneuron_cpu_online ............................... Passed 0.59 sec | |
Start 253: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
90/271 Test #17: mpi_init::python_mpiexec_nrnmpi_init ..................................... Passed 0.80 sec | |
Start 18: mpi_init::python_mpiexec_mpienv | |
91/271 Test #253: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate .............. Passed 0.79 sec | |
Start 254: testcorenrn_vecplay::coreneuron_cpu_offline | |
92/271 Test #254: testcorenrn_vecplay::coreneuron_cpu_offline .............................. Passed 0.33 sec | |
Start 263: testcorenrn_watch::neuron | |
93/271 Test #18: mpi_init::python_mpiexec_mpienv .......................................... Passed 0.76 sec | |
Start 19: pynrn::basic_tests_py3.10 | |
94/271 Test #263: testcorenrn_watch::neuron ................................................ Passed 0.51 sec | |
Start 264: testcorenrn_watch::coreneuron_cpu_online | |
95/271 Test #264: testcorenrn_watch::coreneuron_cpu_online ................................. Passed 0.70 sec | |
Start 265: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
96/271 Test #265: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................ Passed 0.89 sec | |
Start 266: testcorenrn_watch::coreneuron_cpu_offline | |
97/271 Test #266: testcorenrn_watch::coreneuron_cpu_offline ................................ Passed 0.33 sec | |
Start 269: testcorenrn_netstimdirect::direct_netstimdirect | |
98/271 Test #269: testcorenrn_netstimdirect::direct_netstimdirect .......................... Passed 0.82 sec | |
Start 270: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
99/271 Test #270: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ......... Passed 0.86 sec | |
Start 20: datahandle::datahandle_tests | |
Start 21: coverage_tests::cover_tests | |
100/271 Test #20: datahandle::datahandle_tests ............................................. Passed 0.91 sec | |
Start 22: example_nmodl::ca_ap_hoc | |
101/271 Test #21: coverage_tests::cover_tests .............................................. Passed 1.02 sec | |
Start 23: example_nmodl::cabpump_hoc | |
102/271 Test #22: example_nmodl::ca_ap_hoc ................................................. Passed 0.41 sec | |
Start 24: example_nmodl::cachan_hoc | |
103/271 Test #23: example_nmodl::cabpump_hoc ............................................... Passed 0.34 sec | |
Start 25: example_nmodl::cadif_hoc | |
104/271 Test #24: example_nmodl::cachan_hoc ................................................ Passed 0.14 sec | |
Start 26: example_nmodl::cadifusl_hoc | |
105/271 Test #25: example_nmodl::cadif_hoc ................................................. Passed 0.17 sec | |
Start 27: example_nmodl::cadifusl1_hoc | |
106/271 Test #26: example_nmodl::cadifusl_hoc .............................................. Passed 0.18 sec | |
Start 28: example_nmodl::cadifusl2_hoc | |
107/271 Test #27: example_nmodl::cadifusl1_hoc ............................................. Passed 0.24 sec | |
Start 29: example_nmodl::cagk_hoc | |
108/271 Test #28: example_nmodl::cadifusl2_hoc ............................................. Passed 0.16 sec | |
Start 30: example_nmodl::capmp_hoc | |
109/271 Test #29: example_nmodl::cagk_hoc .................................................. Passed 0.14 sec | |
Start 31: example_nmodl::cv_hoc | |
110/271 Test #30: example_nmodl::capmp_hoc ................................................. Passed 0.21 sec | |
Start 32: example_nmodl::fh_hoc | |
111/271 Test #31: example_nmodl::cv_hoc .................................................... Passed 0.14 sec | |
Start 33: example_nmodl::fit1_hoc | |
112/271 Test #32: example_nmodl::fh_hoc .................................................... Passed 0.14 sec | |
Start 34: example_nmodl::gap_hoc | |
113/271 Test #33: example_nmodl::fit1_hoc .................................................. Passed 0.14 sec | |
Start 35: example_nmodl::hh1_hoc | |
114/271 Test #34: example_nmodl::gap_hoc ................................................... Passed 0.15 sec | |
Start 36: example_nmodl::hhvect_hoc | |
115/271 Test #35: example_nmodl::hh1_hoc ................................................... Passed 0.14 sec | |
Start 37: example_nmodl::nacum_hoc | |
116/271 Test #36: example_nmodl::hhvect_hoc ................................................ Passed 0.15 sec | |
Start 38: example_nmodl::nadifl1_hoc | |
117/271 Test #37: example_nmodl::nacum_hoc ................................................. Passed 0.14 sec | |
Start 39: example_nmodl::nadifl2_hoc | |
118/271 Test #38: example_nmodl::nadifl1_hoc ............................................... Passed 0.16 sec | |
Start 40: example_nmodl::nadifl3_hoc | |
119/271 Test #39: example_nmodl::nadifl2_hoc ............................................... Passed 0.17 sec | |
Start 41: example_nmodl::nadifl4_hoc | |
120/271 Test #40: example_nmodl::nadifl3_hoc ............................................... Passed 0.16 sec | |
Start 42: example_nmodl::obj_ex_hoc | |
121/271 Test #41: example_nmodl::nadifl4_hoc ............................................... Passed 0.24 sec | |
Start 43: example_nmodl::order_hoc | |
122/271 Test #42: example_nmodl::obj_ex_hoc ................................................ Passed 0.23 sec | |
Start 44: example_nmodl::passiv_hoc | |
123/271 Test #43: example_nmodl::order_hoc ................................................. Passed 0.24 sec | |
Start 45: example_nmodl::stim1_hoc | |
124/271 Test #44: example_nmodl::passiv_hoc ................................................ Passed 0.17 sec | |
Start 46: example_nmodl::syn1_hoc | |
125/271 Test #45: example_nmodl::stim1_hoc ................................................. Passed 0.14 sec | |
Start 47: example_nmodl::synpre_hoc | |
126/271 Test #46: example_nmodl::syn1_hoc .................................................. Passed 0.14 sec | |
Start 48: example_nmodl::tstextrn_hoc | |
127/271 Test #48: example_nmodl::tstextrn_hoc .............................................. Passed 0.23 sec | |
Start 49: example_nmodl::tstpnt1_hoc | |
128/271 Test #47: example_nmodl::synpre_hoc ................................................ Passed 0.30 sec | |
Start 50: example_nmodl::tstpnt2_hoc | |
129/271 Test #49: example_nmodl::tstpnt1_hoc ............................................... Passed 0.16 sec | |
Start 51: example_nmodl::tstvec_hoc | |
130/271 Test #50: example_nmodl::tstpnt2_hoc ............................................... Passed 0.16 sec | |
Start 52: example_nmodl::cagkftab_py | |
131/271 Test #51: example_nmodl::tstvec_hoc ................................................ Passed 0.15 sec | |
Start 53: example_nmodl::expsynspine_py | |
132/271 Test #19: pynrn::basic_tests_py3.10 ................................................ Passed 7.71 sec | |
Start 54: example_nmodl::nonlin_py | |
133/271 Test #53: example_nmodl::expsynspine_py ............................................ Passed 0.72 sec | |
Start 55: example_nmodl::tstpnt1_py | |
134/271 Test #55: example_nmodl::tstpnt1_py ................................................ Passed 0.51 sec | |
Start 56: example_nmodl::tstpnt2_py | |
135/271 Test #56: example_nmodl::tstpnt2_py ................................................ Passed 0.54 sec | |
Start 57: example_nmodl::vlag_py | |
136/271 Test #57: example_nmodl::vlag_py ................................................... Passed 0.51 sec | |
Start 58: hoctests::test_loadbal_hoc | |
137/271 Test #54: example_nmodl::nonlin_py ................................................. Passed 2.30 sec | |
Start 59: hoctests::perf1_hoc | |
138/271 Test #58: hoctests::test_loadbal_hoc ............................................... Passed 0.39 sec | |
Start 60: hoctests::test1_hoc | |
139/271 Test #60: hoctests::test1_hoc ...................................................... Passed 0.27 sec | |
Start 61: hoctests::test2_hoc | |
140/271 Test #61: hoctests::test2_hoc ...................................................... Passed 0.17 sec | |
Start 62: hoctests::test3_hoc | |
141/271 Test #62: hoctests::test3_hoc ...................................................... Passed 0.14 sec | |
Start 63: hoctests::test4_hoc | |
142/271 Test #63: hoctests::test4_hoc ...................................................... Passed 0.13 sec | |
Start 64: hoctests::test5_hoc | |
143/271 Test #64: hoctests::test5_hoc ...................................................... Passed 0.13 sec | |
Start 65: hoctests::test6_hoc | |
144/271 Test #59: hoctests::perf1_hoc ...................................................... Passed 1.20 sec | |
Start 66: hoctests::test7_hoc | |
145/271 Test #65: hoctests::test6_hoc ...................................................... Passed 0.14 sec | |
Start 67: hoctests::test8_hoc | |
146/271 Test #52: example_nmodl::cagkftab_py ............................................... Passed 3.76 sec | |
Start 68: hoctests::test9_hoc | |
147/271 Test #66: hoctests::test7_hoc ...................................................... Passed 0.14 sec | |
Start 69: hoctests::test_hocGUI2_py | |
148/271 Test #67: hoctests::test8_hoc ...................................................... Passed 0.13 sec | |
Start 70: hoctests::test_kschan_py | |
149/271 Test #68: hoctests::test9_hoc ...................................................... Passed 0.13 sec | |
Start 71: hoctests::test_neurondemo_py | |
150/271 Test #69: hoctests::test_hocGUI2_py ................................................ Passed 0.83 sec | |
Start 72: hoctests::test_nrniv-launch_py | |
151/271 Test #71: hoctests::test_neurondemo_py ............................................. Passed 0.77 sec | |
Start 73: hoctests::test_shape_py | |
152/271 Test #70: hoctests::test_kschan_py ................................................. Passed 0.83 sec | |
Start 74: hoctests::test1_py | |
153/271 Test #72: hoctests::test_nrniv-launch_py ........................................... Passed 0.38 sec | |
Start 75: hoctests::test2_py | |
154/271 Test #73: hoctests::test_shape_py .................................................. Passed 0.83 sec | |
Start 76: hoctests::test9_py | |
155/271 Test #74: hoctests::test1_py ....................................................... Passed 0.78 sec | |
Start 82: coreneuron_standalone::test_nrn_corenrn_standalone | |
156/271 Test #75: hoctests::test2_py ....................................................... Passed 0.65 sec | |
Start 83: nmodl_tests::test_table | |
157/271 Test #76: hoctests::test9_py ....................................................... Passed 0.66 sec | |
Start 84: nmodl_tests::test_disc | |
158/271 Test #82: coreneuron_standalone::test_nrn_corenrn_standalone ....................... Passed 0.77 sec | |
Start 85: nmodl_tests::test_function_table | |
159/271 Test #83: nmodl_tests::test_table .................................................. Passed 1.37 sec | |
Start 86: nmodl_tests::test_kinetic | |
160/271 Test #84: nmodl_tests::test_disc ................................................... Passed 0.97 sec | |
Start 87: coreneuron_modtests::version_macros | |
161/271 Test #85: nmodl_tests::test_function_table ......................................... Passed 0.97 sec | |
Start 88: coreneuron_modtests::fornetcon_py_cpu | |
162/271 Test #86: nmodl_tests::test_kinetic ................................................ Passed 0.98 sec | |
Start 89: coreneuron_modtests::direct_py_cpu | |
163/271 Test #87: coreneuron_modtests::version_macros ...................................... Passed 1.20 sec | |
Start 90: coreneuron_modtests::direct_hoc_cpu | |
164/271 Test #88: coreneuron_modtests::fornetcon_py_cpu .................................... Passed 1.12 sec | |
Start 91: coreneuron_modtests::spikes_py_cpu | |
165/271 Test #89: coreneuron_modtests::direct_py_cpu ....................................... Passed 0.87 sec | |
Start 92: coreneuron_modtests::spikes_file_mode_py_cpu | |
166/271 Test #90: coreneuron_modtests::direct_hoc_cpu ...................................... Passed 0.89 sec | |
Start 93: coreneuron_modtests::fast_imem_py_cpu | |
167/271 Test #92: coreneuron_modtests::spikes_file_mode_py_cpu ............................. Passed 0.89 sec | |
Start 94: coreneuron_modtests::datareturn_py_cpu | |
168/271 Test #91: coreneuron_modtests::spikes_py_cpu ....................................... Passed 1.48 sec | |
Start 95: coreneuron_modtests::test_units_py_cpu | |
169/271 Test #93: coreneuron_modtests::fast_imem_py_cpu .................................... Passed 1.24 sec | |
Start 96: coreneuron_modtests::test_netmove_py_cpu | |
170/271 Test #95: coreneuron_modtests::test_units_py_cpu ................................... Passed 0.78 sec | |
Start 97: coreneuron_modtests::test_pointer_py_cpu | |
171/271 Test #94: coreneuron_modtests::datareturn_py_cpu ................................... Passed 1.49 sec | |
Start 98: coreneuron_modtests::test_watchrange_py_cpu | |
172/271 Test #96: coreneuron_modtests::test_netmove_py_cpu ................................. Passed 1.40 sec | |
Start 99: coreneuron_modtests::test_psolve_py_cpu | |
173/271 Test #98: coreneuron_modtests::test_watchrange_py_cpu .............................. Passed 0.68 sec | |
Start 100: coreneuron_modtests::test_ba_py_cpu | |
174/271 Test #100: coreneuron_modtests::test_ba_py_cpu ...................................... Passed 0.74 sec | |
Start 101: coreneuron_modtests::test_natrans_py_cpu | |
175/271 Test #99: coreneuron_modtests::test_psolve_py_cpu .................................. Passed 0.85 sec | |
Start 105: nmodl_tests_coreneuron::test_table_coreneuron_cpu | |
176/271 Test #101: coreneuron_modtests::test_natrans_py_cpu ................................. Passed 0.75 sec | |
Start 106: nmodl_tests_coreneuron::test_disc_coreneuron_cpu | |
177/271 Test #105: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................ Passed 0.73 sec | |
Start 107: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu | |
178/271 Test #97: coreneuron_modtests::test_pointer_py_cpu ................................. Passed 3.49 sec | |
Start 108: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu | |
179/271 Test #106: nmodl_tests_coreneuron::test_disc_coreneuron_cpu ......................... Passed 0.74 sec | |
Start 109: modlunit_unitstest | |
180/271 Test #107: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ............... Passed 0.73 sec | |
Start 110: modlunit_hh | |
181/271 Test #110: modlunit_hh .............................................................. Passed 0.21 sec | |
Start 111: modlunit_stim | |
182/271 Test #109: modlunit_unitstest ....................................................... Passed 0.24 sec | |
Start 112: modlunit_pattern | |
183/271 Test #112: modlunit_pattern ......................................................... Passed 0.15 sec | |
Start 113: pyinit::nrniv_script.py | |
184/271 Test #111: modlunit_stim ............................................................ Passed 0.18 sec | |
Start 114: pyinit::nrniv_script.py_error | |
185/271 Test #114: pyinit::nrniv_script.py_error ............................................ Passed 0.15 sec | |
Start 115: pyinit::nrniv_two_scripts.py | |
186/271 Test #113: pyinit::nrniv_script.py .................................................. Passed 0.16 sec | |
Start 116: pyinit::nrniv_two_scripts.py_error_check_code | |
187/271 Test #108: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ...................... Passed 0.64 sec | |
Start 117: pyinit::nrniv_two_scripts.py_error_check_output | |
188/271 Test #116: pyinit::nrniv_two_scripts.py_error_check_code ............................ Passed 0.12 sec | |
Start 118: pyinit::nrniv_python_command | |
189/271 Test #115: pyinit::nrniv_two_scripts.py ............................................. Passed 0.13 sec | |
Start 119: pyinit::nrniv_python_command_error | |
190/271 Test #117: pyinit::nrniv_two_scripts.py_error_check_output .......................... Passed 0.12 sec | |
Start 120: pyinit::nrniv_python_script.py | |
191/271 Test #118: pyinit::nrniv_python_command ............................................. Passed 0.13 sec | |
Start 121: pyinit::nrniv_python_script.py_error | |
192/271 Test #119: pyinit::nrniv_python_command_error ....................................... Passed 0.12 sec | |
Start 122: pyinit::nrniv_python_command_twice | |
193/271 Test #120: pyinit::nrniv_python_script.py ........................................... Passed 0.13 sec | |
Start 123: pyinit::nrniv_python_script.py_twice | |
194/271 Test #121: pyinit::nrniv_python_script.py_error ..................................... Passed 0.13 sec | |
Start 124: pyinit::nrniv_python_command_args | |
195/271 Test #122: pyinit::nrniv_python_command_twice ....................................... Passed 0.13 sec | |
Start 125: pyinit::nrniv_python_script.py_args | |
196/271 Test #123: pyinit::nrniv_python_script.py_twice ..................................... Passed 0.12 sec | |
Start 126: pyinit::nrniv_nopython_PythonObject | |
197/271 Test #124: pyinit::nrniv_python_command_args ........................................ Passed 0.13 sec | |
Start 127: pyinit::nrniv_nopython_PythonObject_pyexe | |
198/271 Test #125: pyinit::nrniv_python_script.py_args ...................................... Passed 0.13 sec | |
Start 128: pyinit::nrniv_nopython_PythonObject_pyenv | |
199/271 Test #126: pyinit::nrniv_nopython_PythonObject ...................................... Passed 0.11 sec | |
Start 129: pyinit::nrniv_py3.10_python_command_version_check | |
200/271 Test #127: pyinit::nrniv_nopython_PythonObject_pyexe ................................ Passed 0.11 sec | |
Start 130: pyinit::nrniv_py3.10_python_check_sys_path | |
201/271 Test #128: pyinit::nrniv_nopython_PythonObject_pyenv ................................ Passed 0.11 sec | |
Start 132: pyinit::nrniv_py3.10_nrnpython_check_sys_path | |
202/271 Test #129: pyinit::nrniv_py3.10_python_command_version_check ........................ Passed 0.12 sec | |
Start 134: pyinit::nrniv_py3.10_python_check_sys_prefix | |
203/271 Test #130: pyinit::nrniv_py3.10_python_check_sys_path ............................... Passed 0.13 sec | |
Start 136: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix | |
204/271 Test #132: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................ Passed 0.13 sec | |
Start 138: pyinit::nrniv_py3.10_python_check_sys_exec_prefix | |
205/271 Test #134: pyinit::nrniv_py3.10_python_check_sys_prefix ............................. Passed 0.13 sec | |
Start 140: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix | |
206/271 Test #136: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix .......................... Passed 0.13 sec | |
Start 142: pyinit::nrniv_py3.10_python_check_sys_base_prefix | |
207/271 Test #138: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................ Passed 0.13 sec | |
Start 144: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix | |
208/271 Test #140: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix ..................... Passed 0.13 sec | |
Start 146: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix | |
209/271 Test #144: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix ..................... Passed 0.13 sec | |
Start 148: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix | |
210/271 Test #142: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................ Passed 0.13 sec | |
Start 150: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding | |
211/271 Test #146: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ................... Passed 0.13 sec | |
Start 152: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding | |
212/271 Test #150: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding .................... Passed 0.13 sec | |
Start 154: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding | |
213/271 Test #148: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................ Passed 0.13 sec | |
Start 156: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding | |
214/271 Test #152: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding ................. Passed 0.12 sec | |
Start 158: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding | |
215/271 Test #158: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding .................... Passed 0.13 sec | |
Start 160: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding | |
216/271 Test #154: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding ..................... Passed 0.13 sec | |
Start 162: pyinit::nrniv_py3.10_python_command_import_neuron | |
217/271 Test #156: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding .................. Passed 0.13 sec | |
Start 163: pyinit::py3.10_command_import_neuron | |
218/271 Test #160: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding ................. Passed 0.14 sec | |
Start 164: pyinit::nrniv_py3.10_hoc_command_nrnpython | |
219/271 Test #164: pyinit::nrniv_py3.10_hoc_command_nrnpython ............................... Passed 0.34 sec | |
Start 165: pyinit::nrniv_pydef_python_command_version_check | |
220/271 Test #163: pyinit::py3.10_command_import_neuron ..................................... Passed 0.60 sec | |
Start 166: pyinit::nrniv_pydef_python_check_sys_path | |
221/271 Test #162: pyinit::nrniv_py3.10_python_command_import_neuron ........................ Passed 0.61 sec | |
Start 168: pyinit::nrniv_pydef_nrnpython_check_sys_path | |
222/271 Test #165: pyinit::nrniv_pydef_python_command_version_check ......................... Passed 0.14 sec | |
Start 170: pyinit::nrniv_pydef_python_check_sys_prefix | |
223/271 Test #166: pyinit::nrniv_pydef_python_check_sys_path ................................ Passed 0.13 sec | |
Start 172: pyinit::nrniv_pydef_nrnpython_check_sys_prefix | |
224/271 Test #168: pyinit::nrniv_pydef_nrnpython_check_sys_path ............................. Passed 0.13 sec | |
Start 174: pyinit::nrniv_pydef_python_check_sys_exec_prefix | |
225/271 Test #170: pyinit::nrniv_pydef_python_check_sys_prefix .............................. Passed 0.13 sec | |
Start 176: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix | |
226/271 Test #172: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ........................... Passed 0.13 sec | |
Start 178: pyinit::nrniv_pydef_python_check_sys_base_prefix | |
227/271 Test #174: pyinit::nrniv_pydef_python_check_sys_exec_prefix ......................... Passed 0.13 sec | |
Start 180: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix | |
228/271 Test #176: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ...................... Passed 0.13 sec | |
Start 182: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix | |
229/271 Test #180: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ...................... Passed 0.13 sec | |
Start 184: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix | |
230/271 Test #178: pyinit::nrniv_pydef_python_check_sys_base_prefix ......................... Passed 0.13 sec | |
Start 186: pyinit::nrniv_pydef_python_check_sys_stderr.encoding | |
231/271 Test #182: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix .................... Passed 0.13 sec | |
Start 188: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding | |
232/271 Test #184: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix ................. Passed 0.13 sec | |
Start 190: pyinit::nrniv_pydef_python_check_sys_stdin.encoding | |
233/271 Test #186: pyinit::nrniv_pydef_python_check_sys_stderr.encoding ..................... Passed 0.13 sec | |
Start 192: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding | |
234/271 Test #188: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding .................. Passed 0.13 sec | |
Start 194: pyinit::nrniv_pydef_python_check_sys_stdout.encoding | |
235/271 Test #190: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ...................... Passed 0.13 sec | |
Start 196: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding | |
236/271 Test #192: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ................... Passed 0.13 sec | |
Start 198: pyinit::nrniv_pydef_python_command_import_neuron | |
237/271 Test #194: pyinit::nrniv_pydef_python_check_sys_stdout.encoding ..................... Passed 0.13 sec | |
Start 199: pyinit::pydef_command_import_neuron | |
238/271 Test #196: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding .................. Passed 0.13 sec | |
Start 200: pyinit::nrniv_pydef_hoc_command_nrnpython | |
239/271 Test #200: pyinit::nrniv_pydef_hoc_command_nrnpython ................................ Passed 0.35 sec | |
Start 201: external_nrntest | |
240/271 Test #198: pyinit::nrniv_pydef_python_command_import_neuron ......................... Passed 0.57 sec | |
Start 221: testcorenrn_bbcore::compare_results | |
241/271 Test #199: pyinit::pydef_command_import_neuron ...................................... Passed 0.58 sec | |
Start 227: testcorenrn_conc::compare_results | |
242/271 Test #227: testcorenrn_conc::compare_results ........................................ Passed 0.17 sec | |
Start 233: testcorenrn_deriv::compare_results | |
243/271 Test #221: testcorenrn_bbcore::compare_results ...................................... Passed 0.18 sec | |
Start 239: testcorenrn_gf::compare_results | |
244/271 Test #233: testcorenrn_deriv::compare_results ....................................... Passed 0.02 sec | |
Start 245: testcorenrn_kin::compare_results | |
245/271 Test #239: testcorenrn_gf::compare_results .......................................... Passed 0.02 sec | |
Start 250: testcorenrn_patstim::compare_results | |
246/271 Test #245: testcorenrn_kin::compare_results ......................................... Passed 0.02 sec | |
Start 256: testcorenrn_vecplay::compare_results | |
247/271 Test #250: testcorenrn_patstim::compare_results ..................................... Passed 0.02 sec | |
Start 268: testcorenrn_watch::compare_results | |
248/271 Test #256: testcorenrn_vecplay::compare_results ..................................... Passed 0.02 sec | |
Start 271: testcorenrn_netstimdirect::compare_results | |
249/271 Test #268: testcorenrn_watch::compare_results ....................................... Passed 0.02 sec | |
250/271 Test #271: testcorenrn_netstimdirect::compare_results ............................... Passed 0.02 sec | |
Start 78: parallel::partrans | |
251/271 Test #78: parallel::partrans ....................................................... Passed 0.89 sec | |
Start 79: parallel::netpar | |
252/271 Test #79: parallel::netpar ......................................................... Passed 0.77 sec | |
Start 80: parallel::bas | |
253/271 Test #80: parallel::bas ............................................................ Passed 3.52 sec | |
Start 81: parallel::nrntest_fast | |
254/271 Test #81: parallel::nrntest_fast ................................................... Passed 1.21 sec | |
Start 102: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
255/271 Test #102: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ......................... Passed 0.96 sec | |
Start 103: coreneuron_modtests::inputpresyn_py_cpu | |
256/271 Test #103: coreneuron_modtests::inputpresyn_py_cpu .................................. Passed 1.06 sec | |
257/271 Test #201: external_nrntest ......................................................... Passed 37.33 sec | |
Start 261: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
258/271 Test #261: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................ Passed 0.30 sec | |
Start 202: reduced_dentate::neuron | |
259/271 Test #202: reduced_dentate::neuron .................................................. Passed 24.65 sec | |
Start 203: reduced_dentate::coreneuron_cpu | |
260/271 Test #203: reduced_dentate::coreneuron_cpu .......................................... Passed 17.55 sec | |
Start 213: external_ringtest::coreneuron_cpu_mpi_threads | |
261/271 Test #213: external_ringtest::coreneuron_cpu_mpi_threads ............................ Passed 0.95 sec | |
Start 214: external_ringtest::coreneuron_cpu_mpi_threads_python | |
262/271 Test #214: external_ringtest::coreneuron_cpu_mpi_threads_python ..................... Passed 1.14 sec | |
Start 257: testcorenrn_vecevent::neuron | |
263/271 Test #257: testcorenrn_vecevent::neuron ............................................. Passed 0.31 sec | |
Start 258: testcorenrn_vecevent::coreneuron_cpu_online | |
264/271 Test #258: testcorenrn_vecevent::coreneuron_cpu_online .............................. Passed 0.62 sec | |
Start 259: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
265/271 Test #259: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ............. Passed 0.67 sec | |
Start 260: testcorenrn_vecevent::coreneuron_cpu_offline | |
266/271 Test #260: testcorenrn_vecevent::coreneuron_cpu_offline ............................. Passed 0.27 sec | |
Start 77: parallel::subworld | |
267/271 Test #77: parallel::subworld ....................................................... Passed 1.13 sec | |
Start 104: coreneuron_modtests::test_subworlds_py_cpu | |
268/271 Test #104: coreneuron_modtests::test_subworlds_py_cpu ............................... Passed 1.80 sec | |
Start 204: reduced_dentate::compare_results | |
Start 215: external_ringtest::compare_results | |
Start 262: testcorenrn_vecevent::compare_results | |
269/271 Test #204: reduced_dentate::compare_results ......................................... Passed 0.02 sec | |
270/271 Test #262: testcorenrn_vecevent::compare_results .................................... Passed 0.02 sec | |
271/271 Test #215: external_ringtest::compare_results ....................................... Passed 0.02 sec | |
100% tests passed, 0 tests failed out of 271 | |
Total Test time (real) = 133.45 sec | |
[32;1m$ cmake --build . --target install[0;m | |
[0/2] Re-checking globbed directories... | |
[1/5] Update hh.mod for CoreNEURON compatibility | |
[2/5] Generating help_data.dat | |
[3/5] cd /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h | |
fatal: No names found, cannot describe anything. | |
[4/5] Running utility command for hoc_module | |
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS | |
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk | |
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org | |
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0 | |
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'}) | |
INFO:root:RX3D is DISABLED | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. | |
!! | |
******************************************************************************** | |
Requirements should be satisfied by a PEP 517 installer. | |
If you are using pip, you can try `pip install --use-pep517`. | |
******************************************************************************** | |
!! | |
dist.fetch_build_eggs(dist.setup_requires) | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:135: UserWarning: "/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn" is shallow and may cause errors | |
warnings.warn(f'"{wd.path}" is shallow and may cause errors') | |
INFO:root:running build | |
INFO:root:running build_py | |
INFO:root:running build_ext | |
INFO:root:==> Building Python extensions | |
INFO:root:running build_scripts | |
[4/5] Install the project... | |
-- Install configuration: "Custom" | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/libsymtab.a | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/librxdmath.dylib | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/libnrniv.dylib | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/libvisitor.a | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/hclass3.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/hoc.cpython-310-darwin.so | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/expect_hocerr.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/psection.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/neuroml | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/neuroml/metadata.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/neuroml/morphml.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/neuroml/xml2nrn.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/neuroml/__init__.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/neuroml/neuroml.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/neuroml/rdxml.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/neuroml/biophysics.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/config.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/units.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/sections.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdException.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/options.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/plugins.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdsection.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/species.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdmath.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/rate.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/region.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/multiCompartmentReaction.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/constants.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/dimension3.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/__init__.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/section1d.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/export.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/initializer.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/rangevar.py | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/python/neuron/rxd/geometry.py | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/io/nrnsection_mapping.hpp | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/io/reports | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_handler.hpp | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/string_utils.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_assert.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/nrnoc_aux.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar/progressbar.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/memory_utils.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/profile | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/profile/profiler_interface.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/lpt.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/offload.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/memory.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/units.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/utils.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/randoms | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/randoms/nrnran123.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_stats.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/utils/ivocvect.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/nrnoc | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md2redef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md1redef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/membrane_definitions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/sim | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/sim/multicore.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/sim/fast_imem.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/crout_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/errcodes.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_struct.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/ssimplic_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/sparse_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/apps | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/apps/corenrn_parameters.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/permute | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/permute/node_permute.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/permute/cellorder.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include//coreneuron/permute/data_layout.hpp | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/coreneuron/mod_func.c.pl | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/coreneuron/enginemech.cpp | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/bin/nmodl | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/bin/nrniv-core | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/coreneuron/coreneuron.cpp | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/lib/libcorenrnmech_internal.dylib | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/crout_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/cache | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/cache/mechanism_range.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/container | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/container/non_owning_soa_identifier.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/container/data_handle.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/container/generic_data_handle.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/model_data_fwd.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnrandom.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/hocassrt.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/multicore.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnconf.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/wrap_sprintf.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/simeq.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/ocmisc.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/multisplit.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/oc_ansi.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/membfunc.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnmpidec.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnversionmacros.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/scoplib.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/sparse.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/membdef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/newton_struct.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/newton | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/newton/newton.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrncvode | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrncvode/nrnneosm.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/bbsavestate.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nmodlmutex.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/euler_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/hocdec.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/md2redef.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/QtAlignedMalloc | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/SparseCore | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/Jacobi | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/SparseQR | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/UmfPackSupport | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/Sparse | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/SuperLUSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/StdList | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/MetisSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/SparseCholesky | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/Eigenvalues | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/PaStiXSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport/CholmodSupport.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/misc | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/misc/blas.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/misc/Kernel.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/misc/RealSvd2x2.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/misc/Image.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/misc/lapack.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke_mangling.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/PermutationMatrix.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryOp.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/StlIterators.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/Solve.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointRank2Update.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointProduct.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverVector.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/Product.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/util/XprHelper.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/Map.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/ForceAlignedAccess.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/MathFunctions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/functors | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/UnaryFunctors.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/TernaryFunctors.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/AssignmentFunctors.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/BinaryFunctors.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfCwiseBinaryOp.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/Inverse.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign_MKL.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/Swap.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/ProductEvaluators.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/MapBase.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/Matrix.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/EigenBase.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/StableNorm.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/GenericPacketMath.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseBinaryOp.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/Visitor.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseStorage.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/DiagonalProduct.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryView.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/NoAlias.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseCoeffsBase.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/PartialReduxEvaluator.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/IndexedView.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/Fuzzy.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/TriangularMatrix.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/IO.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/PacketMath.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/MathFunctions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/TypeCasting.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/PacketMath.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/MathFunctions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/TypeCasting.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/PacketMath.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/MathFunctions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/Complex.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/PacketMath.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/Complex.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/Half.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/Settings.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/TypeCasting.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/BFloat16.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/ConjHelper.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512 | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/PacketMath.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/MathFunctions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/TypeCasting.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/Complex.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/PacketMath.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/MathFunctions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/TypeCasting.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc/math_constants.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/PacketMath.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/MathFunctions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/TypeCasting.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/Complex.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/PacketMath.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/MathFunctions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/InteropHeaders.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/TypeCasting.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/PacketMath.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/MathFunctions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/TypeCasting.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/Complex.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/PacketMath.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MathFunctions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProduct.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/arch | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/StlSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/KLUSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnapi.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrncvode.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnsemanticversion.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/spmatrix.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/ocfunc.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/section_fwd.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/row_view.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/hoc_membf.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/backtrace_utils.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnisaac.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/parse_with_deps.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/newton_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnredef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/cspredef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/dimplic.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/hoc.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/newton.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/crout.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnmpiuse.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/md1redef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrniv_mf.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrn_ansi.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/deflate.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/errcodes.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/nrniv | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/engine.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/gpu | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/core | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/lib | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/config | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/config/config.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/file_utils.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/reports | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp | |
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-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/treeview.hoc | |
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-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/lib/nrnunits.lib.in | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/lib/prologue.id | |
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-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/lib/auditscripts/gettarname | |
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-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo | |
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-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/singhh.ses | |
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-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/pyramid.nrn | |
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-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release/nachan.mod | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release/release.mod | |
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-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/dend3/syn3.hoc | |
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-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/sync | |
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-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/sync/spkplot.hoc | |
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-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/dynclamp.hoc | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/singhh.hoc | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/hh.ses | |
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-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/lib/nrnunits.lib | |
-- Installing: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/lib/nrn.defaults | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/lib/cleanup | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/crout_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/cache | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/container | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/container/non_owning_soa_identifier.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/container/data_handle.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/container/generic_data_handle.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/neuron/model_data_fwd.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnrandom.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/hocassrt.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/misc | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/misc/lapack.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke_mangling.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_dfs.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/plugins | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/plugins/IndexedViewMethods.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Householder | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseCore | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Jacobi | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/QR | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseQR | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SVD | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Cholesky | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/arch | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport | |
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-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/StlSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Eigen/KLUSupport | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnapi.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrncvode.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnsemanticversion.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/spmatrix.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/ocfunc.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/section_fwd.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/row_view.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/hoc_membf.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/backtrace_utils.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnisaac.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/parse_with_deps.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/newton_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnredef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/cspredef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/dimplic.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/hoc.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/newton.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/crout.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnmpiuse.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/md1redef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrniv_mf.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrn_ansi.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/deflate.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/errcodes.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/nrniv | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/engine.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/gpu | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/core | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/lib | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/config | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/config/config.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/file_utils.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/reports | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/profile | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/randoms | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/nrnoc | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/sim | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/apps | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/permute | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnassrt.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/spconfig.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/runge.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/nrnoc_ml.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/mech_api.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/mcran4.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/ssimplic_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/hocparse.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/ssimplic.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123 | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/open64features.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/sse.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/threefry.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/conventional | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/philox.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/gsl_microrng.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/aes.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/array.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/u01fixedpt.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/boxmuller.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/uniform.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/Random123/ars.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/crout | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/crout/crout.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/sparse_thread.hpp | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/treeset.h | |
-- Up-to-date: /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/include/cspmatrix.h | |
.: replacing existing signature | |
.: replacing existing signature | |
.: replacing existing signature | |
.: replacing existing signature | |
.: replacing existing signature | |
"install" of folder "nrn" of folder "cellular" of folder "hpc" of folder "J746110" of folder "P129101" of folder "0" of folder "builds" of folder "gitlab-runner" of folder "Users" | |
35:57: execution error: Finder got an error: AppleEvent timed out. (-1712) | |
/usr/bin/xcrun | |
/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release | |
cfiles = | |
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
Creating 'arm64' directory for .o files. | |
MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./mcna.o ./nacaex.o ./nachan.o ./release.o | |
-> [32mCompiling[0m mod_func.cpp | |
-> [32mNMODL[0m ../cabpump.mod | |
-> [32mNMODL[0m ../cachan1.mod | |
-> [32mNMODL[0m ../camchan.mod | |
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cachan1.cpp | |
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cabpump.cpp | |
Translating camchan.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/camchan.cpp | |
Thread Safe | |
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
Thread Safe | |
-> [32mNMODL[0m ../invlfire.mod | |
-> [32mNMODL[0m ../capump.mod | |
-> [32mNMODL[0m ../khhchan.mod | |
-> [32mNMODL[0m ../mcna.mod | |
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/invlfire.cpp | |
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/khhchan.cpp | |
Translating capump.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/capump.cpp | |
Thread Safe | |
Thread Safe | |
Thread Safe | |
-> [32mNMODL[0m ../nachan.mod | |
-> [32mNMODL[0m ../nacaex.mod | |
-> [32mNMODL[0m ../release.mod | |
Translating mcna.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/mcna.cpp | |
Thread Safe | |
-> [32mCompiling[0m cabpump.cpp | |
Translating release.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/release.cpp | |
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nacaex.cpp | |
Translating nachan.mod into /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nachan.cpp | |
Thread Safe | |
Thread Safe | |
Thread Safe | |
-> [32mCompiling[0m cachan1.cpp | |
-> [32mCompiling[0m camchan.cpp | |
-> [32mCompiling[0m capump.cpp | |
-> [32mCompiling[0m invlfire.cpp | |
-> [32mCompiling[0m khhchan.cpp | |
-> [32mCompiling[0m mcna.cpp | |
-> [32mCompiling[0m nacaex.cpp | |
-> [32mCompiling[0m nachan.cpp | |
-> [32mCompiling[0m release.cpp | |
=> [32mLINKING[0m shared library ./libnrnmech.dylib | |
ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
=> [32mLINKING[0m executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
Successfully created arm64/special | |
NEURON -- VERSION + HEAD (6a99d78+) 2023-06-06 | |
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2022 | |
See http://neuron.yale.edu/neuron/credits | |
Additional mechanisms from files | |
"cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
[32;1m$ export PATH=${INSTALL_DIR}/bin:${PATH}[0;m | |
[32;1m$ export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python/[0;m | |
[32;1m$ if [[ -f "${INSTALL_DIR}/bin/nrn-enable-sanitizer" ]]; then[0;m | |
[32;1m$ echo --- bin/nrn-enable-sanitizer ---[0;m | |
--- bin/nrn-enable-sanitizer --- | |
[32;1m$ cat bin/nrn-enable-sanitizer[0;m | |
#!/usr/bin/env bash | |
prefix="${NRNHOME:-/Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/install}" | |
export NRN_SANITIZER_PRELOAD_VAR=DYLD_INSERT_LIBRARIES | |
export NRN_SANITIZER_PRELOAD_VAL=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
if [[ "$1" == "--preload" ]]; then | |
shift | |
if [[ "$1" == "python" ]]; then | |
# nrn-enable-sanitizer --preload python is used in the CI, but for it to | |
# work on macOS we need to substitute the real Python binary in place of any | |
# shims. This is done from CMake, and PYTHON_EXECUTABLE contains the real | |
# binary. | |
shift | |
DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 /Users/gitlab-runner/builds/0/P129101/J746110/hpc/cellular/nrn/venv/bin/python "$@" | |
else | |
DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@" | |
fi | |
else | |
MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@" | |
fi | |
[32;1m$ echo ---[0;m | |
--- | |
[32;1m$ nrn_enable_sanitizer=${INSTALL_DIR}/bin/nrn-enable-sanitizer[0;m | |
[32;1m$ nrn_enable_sanitizer_preload="${nrn_enable_sanitizer} --preload"[0;m | |
[32;1m$ else[0;m | |
[32;1m$ $PYTHON --version && ${nrn_enable_sanitizer_preload} python -c 'import neuron; neuron.test()'[0;m | |
Python 3.10.8 | |
testBytesize (neuron.tests.test_vector.VectorTestCase) | |
Test that Vector.__array_interface__ returns the proper bytesize (of a double) ... ok | |
testEndian (neuron.tests.test_vector.VectorTestCase) | |
Test that Vector.__array_interface__ returns the proper byteorder (endian) ... ok | |
testNumpyInteraction (neuron.tests.test_vector.VectorTestCase) | |
Testing numpy.array <=> hoc.Vector interaction ... ok | |
testPerformance (neuron.tests.test_vector.VectorTestCase) | |
Test performance of Vector<->list,array ... ok | |
testABI (neuron.tests.test_neuron.NeuronTestCase) | |
Test use of some Py_LIMITED_API for python3. ... ok | |
testExtendedSection (neuron.tests.test_neuron.NeuronTestCase) ... | |
Executed "l = range(1000000)". Elapsed = 0.000009 s | |
Executed "v = h.Vector(l)". Elapsed = 0.046610 s | |
inplace: | |
Executed "v.from_python(l)". Elapsed = 0.042808 s | |
Executed "a = numpy.array(v)". Elapsed = 0.003418 s | |
inplace: | |
Executed "v.to_python(a)". Elapsed = 0.000818 s | |
Executed "v2 = h.Vector(a)". Elapsed = 0.003119 s | |
inplace: | |
Executed "v2.from_python(a)". Elapsed = 0.000781 s | |
Executed "l2 = list(v2)". Elapsed = 0.039301 s | |
inplace: | |
Executed "v.to_python(l2)". Elapsed = 0.006796 s | |
Executed "v2 = h.Vector(a[::-1])". Elapsed = 0.003121 s | |
Executed "a2 = numpy.array(v2)". Elapsed = 0.003256 s | |
test: ok | |
testHClass (neuron.tests.test_neuron.NeuronTestCase) | |
Test subclass of hoc class. ... ok | |
testHelp (neuron.tests.test_neuron.NeuronTestCase) ... ok | |
testIterators (neuron.tests.test_neuron.NeuronTestCase) | |
Test section, segment, mechanism, rangevar iterators. ... ok | |
testRxDexistence (neuron.tests.test_neuron.NeuronTestCase) ... ok | |
testSectionArgOrder (neuron.tests.test_neuron.NeuronTestCase) | |
First optional arg for Section is name (but name="name" is recommended) ... ok | |
testSectionCell (neuron.tests.test_neuron.NeuronTestCase) | |
Section.cell() internally referenced as weakref. ... ok | |
testSectionListIterator (neuron.tests.test_neuron.NeuronTestCase) | |
As of v8.0, iteration over a SectionList does not change the cas ... ok | |
test_newobj_err (neuron.tests.test_neuron.NeuronTestCase) | |
Test deletion of incompletely constructed objects ... NEURON: generate an error | |
near line 1 | |
ob = new NewObj(1, 2) | |
^ | |
NewObj[4].execerror("generate a...") | |
NewObj[4].init(0, 2) | |
NewObj[3].init(1, 2) | |
NewObj[2].execute1("ob = new N...", NewObj[2]) | |
and others | |
ok | |
testpsection (neuron.tests.test_neuron.NeuronTestCase) ... Syntax: | |
.. code-block:: | |
python | |
h.xpanel('name') | |
h.xpanel('name', [0-1]) | |
h.xpanel() | |
h.xpanel(x, y) | |
h.xpanel(scroll) | |
h.xpanel(scroll, x, y) | |
Description: | |
``h.xpanel("name")`` | |
``h.xpanel("name", [0-1])`` | |
Title of a new panel. Every | |
button, menu, and value between this and a closing ``xpanel()`` command | |
with no arguments (or placement args) belongs to this panel. | |
If the form is used with a second argument equal to 1, then | |
the panel is laid out horizontally. Otherwise the default is vertically. | |
``h.xpanel()`` | |
``h.xpanel(x, y)`` | |
done constructing the panel. so map it to the screen with position | |
optionally specified. | |
``h.xpanel(scroll)`` | |
``h.xpanel(scroll, x, y)`` | |
as above but if the first arg is a number, then the value determines | |
whether the panel will be inside a scrollbox. Scroll = 0 means a scrollbox | |
will NOT be used. Scroll = 1 means the panel will be inside a scrollbox. | |
Scroll = -1 is the default value and whether or not a scrollbox is used | |
is determined by the number of panel items in comparison with the | |
value of the panel_scroll property in the nrn.defaults file. | |
Skipping because NRN_ENABLE_RX3D=False | |
#NewObj and #Foo in existence 3 6 | |
after del a #NewObj and #Foo in existence 0 0 | |
ok | |
---------------------------------------------------------------------- | |
Ran 15 tests in 1.679s | |
OK | |
[32;1m$ if [[ ! "${cmake_args[*]}" =~ "NRN_ENABLE_RX3D=OFF" && ! "${cmake_args[*]}" =~ "NRN_ENABLE_CORENEURON=ON" ]]; then[0;m | |
section_end:1686042317:step_script [0Ksection_start:1686042317:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
[32;1mCreating cache mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-olupton/debian-1-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=22235 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
./ccache: found 1643 matching files and directories[0;m | |
No URL provided, cache will not be uploaded to shared cache server. Cache will be stored only locally.[0;m | |
[32;1mCreated cache[0;m | |
section_end:1686042319:archive_cache [0Ksection_start:1686042319:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
section_end:1686042319:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1686041853:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1686041853:resolve_secrets [0Ksection_start:1686041853:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor406003204, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nrn | |
Pipeline ID 129101, build ref 6a99d78108c74ebbc28ebc88ac0e264b53401fbd, job ID 746111 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P129101, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J746111_PROD_P2160_CP0_C0 | |
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 1549426 | |
job state: PD | |
job state: PD | |
job state: PD | |
job state: PD | |
job state: PD | |
job state: PD | |
job state: PD | |
job state: PD | |
job state: PD | |
job state: PD | |
job state: PD | |
job state: PD | |
job state: PD | |
job state |
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